HHSEARCH alignment of GI: 254780728 and SCOP domain: d2zdra1

Alignment

Probab=97.56  E-value=4e-05  Score=45.83  Aligned_cols=56  Identities=18%  Similarity=0.217  Sum_probs=46.8

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHH-CCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHC
Q ss_conf             9997263688966275341315525133-79200002112454000035044202278871255550
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL  113 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~-~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l  113 (263)
                      =++|++||++|+.|+.+|+.+.. |... +++..         .+++.|+.+..++.+|++|..++|
T Consensus        11 Siva~~~I~kG~~i~~~dl~~~R-P~~ggi~p~~---------~~~viGk~~~~~i~~~~~I~~~dl   67 (68)
T d2zdra1          11 SVVADKDIKKGELLSGDNLWVKR-PGNGDFSVNE---------YETLFGKVAACNIRKGAQIKKTDI   67 (68)
T ss_dssp             EEEESSCBCTTCBCCTTTEEEES-CSCSSSBGGG---------GGGGTTCBBSSCBCTTCBCCGGGB
T ss_pred             EEEECCCCCCCCEECHHHEEEEC-CCCCCCCHHH---------HHHHCCCEECCCCCCCCCCCHHHC
T ss_conf             48990434899995279967988-8799489859---------988659226444589492897987

SCOP domain information

class: All beta proteins
fold: beta-clip
superfamily: AFP III-like domain
family: AFP III-like domain
domain: Capsule biosynthesis protein SiaC, C-terminal domain
species: Neisseria meningitidis [TaxId: 487]