Query gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 263 No_of_seqs 131 out of 616 Neff 7.7 Searched_HMMs 13730 Date Wed Jun 1 09:05:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780728.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1opsa_ b.85.1.1 (A:) Type III 98.0 4.1E-06 3E-10 51.6 4.9 59 48-115 3-61 (64) 2 d2zdra1 b.85.1.1 (A:282-349) C 97.6 4E-05 2.9E-09 45.8 4.6 56 48-113 11-67 (68) 3 d1vlia1 b.85.1.1 (A:297-368) S 97.1 0.00021 1.6E-08 41.5 4.1 58 48-115 9-70 (72) 4 d1ucsa_ b.85.1.1 (A:) Type III 97.0 0.00029 2.1E-08 40.8 4.2 58 48-114 4-61 (64) 5 d1ltla_ b.40.4.11 (A:) DNA rep 56.7 4 0.00029 16.4 2.9 34 125-158 183-216 (239) 6 d2g46a1 b.85.7.2 (A:1-119) Vir 39.9 5.9 0.00043 15.4 1.6 15 49-63 18-32 (119) 7 d1ml9a_ b.85.7.1 (A:) Dim-5 {F 36.4 8.3 0.0006 14.5 1.9 14 49-62 139-152 (284) 8 d2f69a2 b.85.7.1 (A:194-364) H 25.0 14 0.001 13.1 1.9 15 49-63 37-51 (171) 9 d2h2ja2 b.85.7.3 (A:50-310) Ru 24.8 14 0.001 13.1 1.5 16 46-61 32-47 (261) 10 d2hj1a1 d.15.3.4 (A:11-87) Hyp 19.7 18 0.0013 12.6 1.1 10 146-155 64-73 (77) No 1 >d1opsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199]} Probab=97.97 E-value=4.1e-06 Score=51.63 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=48.7 Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC Q ss_conf 99972636889662753413155251337920000211245400003504420227887125555001 Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 (263) Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~ 115 (263) =+||++||++|+.||.+|+..+.-...-+|+..+ +.+.|+.++.+|.+|++|..+++-. T Consensus 3 SiVA~~dI~~G~~lt~~~l~~Krp~p~GI~p~~~---------~~iIGKk~kkdi~~d~~L~~d~ik~ 61 (64) T d1opsa_ 3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPFAEM---------SQLVGKQVNTPVAKGQTLMPNMVKT 61 (64) T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGG---------GGTTTCBBSSCBCTTCBCCGGGBTT T ss_pred CEEECCCCCCCCCCCHHHEEEEECCCCCCCHHHH---------HHHCCHHHHCCCCCCCCCCHHHHHC T ss_conf 6786773289889257885787167887098899---------9974857523306988518999412 No 2 >d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC, C-terminal domain {Neisseria meningitidis [TaxId: 487]} Probab=97.56 E-value=4e-05 Score=45.83 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=46.8 Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHH-CCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHC Q ss_conf 9997263688966275341315525133-79200002112454000035044202278871255550 Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 (263) Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~-~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l 113 (263) =++|++||++|+.|+.+|+.+.. |... +++.. .+++.|+.+..++.+|++|..++| T Consensus 11 Siva~~~I~kG~~i~~~dl~~~R-P~~ggi~p~~---------~~~viGk~~~~~i~~~~~I~~~dl 67 (68) T d2zdra1 11 SVVADKDIKKGELLSGDNLWVKR-PGNGDFSVNE---------YETLFGKVAACNIRKGAQIKKTDI 67 (68) T ss_dssp EEEESSCBCTTCBCCTTTEEEES-CSCSSSBGGG---------GGGGTTCBBSSCBCTTCBCCGGGB T ss_pred EEEECCCCCCCCEECHHHEEEEC-CCCCCCCHHH---------HHHHCCCEECCCCCCCCCCCHHHC T ss_conf 48990434899995279967988-8799489859---------988659226444589492897987 No 3 >d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain {Bacillus subtilis [TaxId: 1423]} Probab=97.11 E-value=0.00021 Score=41.53 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=46.3 Q ss_pred EEEECCCCCCCCEECHHHEEEEECCH---HHCCCHHCCCCCCCCCCHHCC-CCEEECCCCCCCCCCHHHCCC Q ss_conf 99972636889662753413155251---337920000211245400003-504420227887125555001 Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPE---ENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVD 115 (263) Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~---~~~p~~a~~~~~~~~~~~~~~-G~~~~~~i~~G~~i~~~~l~~ 115 (263) -++|++||.+|+.|+.+|+...+ |. .-+++.. .+.+. |+.+..++.+|++|+.++|.. T Consensus 9 Si~a~kdi~kG~~it~~di~~~R-Pg~~~~Gi~p~~---------~~~ii~Gkk~~~~i~~g~~i~~~di~~ 70 (72) T d1vlia1 9 GIFTTAPIQKGEAFSEDNIAVLR-PGQKPQGLHPRF---------FELLTSGVRAVRDIPADTGIVWDDILL 70 (72) T ss_dssp EEEESSCBCTTCBCCTTTEEEEC-CTTSCCCBCGGG---------HHHHHTTCBCSSCBCTTCBCCGGGTSC T ss_pred EEEEECCCCCCCCCCHHHEEEEC-CCCCCCCCCHHH---------HHHHHCCCEECCCCCCCCCCCHHHCCC T ss_conf 38891422888991678867877-888888859899---------999767948846338969369999020 No 4 >d1ucsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId: 8201]} Probab=97.04 E-value=0.00029 Score=40.78 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=47.4 Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCC Q ss_conf 9997263688966275341315525133792000021124540000350442022788712555500 Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 (263) Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~ 114 (263) =+||++.||.|+.||..|++.+-.-..-+|...+ .+++|+.++..+..|+.|.++++- T Consensus 4 SVVA~q~ip~gt~LT~~mm~~KV~eP~Gipae~~---------~~iVGkqvn~~V~edetim~~mvk 61 (64) T d1ucsa_ 4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAEEI---------PKLVGMQVNRAVPLGTTLMPDMVK 61 (64) T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGH---------HHHTTCBBSSCBCTTCBCCGGGBT T ss_pred CEEEEEEECCCCCCCHHHHHEEECCCCCCCHHHH---------HHHHHHHHHCCCCCCCCCCHHHHH T ss_conf 1577412078754347674123127888898999---------998748871051689853366563 No 5 >d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=56.73 E-value=4 Score=16.39 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=21.4 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE Q ss_conf 2798279999716010345621789889999950 Q gi|254780728|r 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 (263) Q Consensus 125 l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~ 158 (263) ++.|..+-++.+....-.-+.++|||+|.|.-.. T Consensus 183 ~~~G~~Pr~i~v~l~~dlvd~~~pGd~V~i~GI~ 216 (239) T d1ltla_ 183 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTL 216 (239) T ss_dssp CCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEE T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEE T ss_conf 7889999679999960302865899999999999 No 6 >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Probab=39.87 E-value=5.9 Score=15.38 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=11.6 Q ss_pred EEECCCCCCCCEECH Q ss_conf 997263688966275 Q gi|254780728|r 49 LISKGDLAVGMVVTP 63 (263) Q Consensus 49 ~va~~di~~G~~It~ 63 (263) +.|+++|++|+.|.. T Consensus 18 vfA~~~i~~g~~i~~ 32 (119) T d2g46a1 18 VFARKSFEKGELVEE 32 (119) T ss_dssp EEECSCBCTTCCCEE T ss_pred EEECCHHHCCCEEEC T ss_conf 998952437977724 No 7 >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Probab=36.39 E-value=8.3 Score=14.54 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=9.2 Q ss_pred EEECCCCCCCCEEC Q ss_conf 99726368896627 Q gi|254780728|r 49 LISKGDLAVGMVVT 62 (263) Q Consensus 49 ~va~~di~~G~~It 62 (263) +.|.++|++|+.|- T Consensus 139 v~a~~~I~kGt~I~ 152 (284) T d1ml9a_ 139 VKCPVNIKRGQFVD 152 (284) T ss_dssp EECSSCBCTTCEEE T ss_pred EEECCCCCCCCEEE T ss_conf 85587718999999 No 8 >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Probab=25.03 E-value=14 Score=13.12 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=10.6 Q ss_pred EEECCCCCCCCEECH Q ss_conf 997263688966275 Q gi|254780728|r 49 LISKGDLAVGMVVTP 63 (263) Q Consensus 49 ~va~~di~~G~~It~ 63 (263) +.|+++|++|+.|.+ T Consensus 37 lFA~~~I~kG~~I~~ 51 (171) T d2f69a2 37 LFSKVAVGPNTVMSF 51 (171) T ss_dssp EEESSCBCTTCEEEE T ss_pred HCCCCCCCCCCEEEE T ss_conf 100864479999998 No 9 >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Probab=24.79 E-value=14 Score=13.12 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=13.7 Q ss_pred EEEEEECCCCCCCCEE Q ss_conf 4899972636889662 Q gi|254780728|r 46 INVLISKGDLAVGMVV 61 (263) Q Consensus 46 v~V~va~~di~~G~~I 61 (263) =.=++|++||++|+.| T Consensus 32 GrGl~AtrdI~~Ge~i 47 (261) T d2h2ja2 32 GLGLVALKDISRNDVI 47 (261) T ss_dssp EEEEECSSCCCTTCEE T ss_pred EEEEEECCCCCCCCEE T ss_conf 4589988757999999 No 10 >d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} Probab=19.66 E-value=18 Score=12.58 Aligned_cols=10 Identities=20% Similarity=0.634 Sum_probs=0.0 Q ss_pred CCCCCEEEEE Q ss_conf 1789889999 Q gi|254780728|r 146 IKPNDHVDVV 155 (263) Q Consensus 146 i~pGd~VDV~ 155 (263) ++.||||-|| T Consensus 64 L~~gDRVEIY 73 (77) T d2hj1a1 64 LKEGDRIEIY 73 (77) T ss_dssp CCTTCEEEEC T ss_pred CCCCCEEEEE T ss_conf 7899999995 Done!