Query         gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 263
No_of_seqs    131 out of 616
Neff          7.7 
Searched_HMMs 13730
Date          Wed Jun  1 09:05:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780728.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1opsa_ b.85.1.1 (A:) Type III  98.0 4.1E-06   3E-10   51.6   4.9   59   48-115     3-61  (64)
  2 d2zdra1 b.85.1.1 (A:282-349) C  97.6   4E-05 2.9E-09   45.8   4.6   56   48-113    11-67  (68)
  3 d1vlia1 b.85.1.1 (A:297-368) S  97.1 0.00021 1.6E-08   41.5   4.1   58   48-115     9-70  (72)
  4 d1ucsa_ b.85.1.1 (A:) Type III  97.0 0.00029 2.1E-08   40.8   4.2   58   48-114     4-61  (64)
  5 d1ltla_ b.40.4.11 (A:) DNA rep  56.7       4 0.00029   16.4   2.9   34  125-158   183-216 (239)
  6 d2g46a1 b.85.7.2 (A:1-119) Vir  39.9     5.9 0.00043   15.4   1.6   15   49-63     18-32  (119)
  7 d1ml9a_ b.85.7.1 (A:) Dim-5 {F  36.4     8.3  0.0006   14.5   1.9   14   49-62    139-152 (284)
  8 d2f69a2 b.85.7.1 (A:194-364) H  25.0      14   0.001   13.1   1.9   15   49-63     37-51  (171)
  9 d2h2ja2 b.85.7.3 (A:50-310) Ru  24.8      14   0.001   13.1   1.5   16   46-61     32-47  (261)
 10 d2hj1a1 d.15.3.4 (A:11-87) Hyp  19.7      18  0.0013   12.6   1.1   10  146-155    64-73  (77)

No 1  
>d1opsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199]}
Probab=97.97  E-value=4.1e-06  Score=51.63  Aligned_cols=59  Identities=15%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf             99972636889662753413155251337920000211245400003504420227887125555001
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD  115 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~  115 (263)
                      =+||++||++|+.||.+|+..+.-...-+|+..+         +.+.|+.++.+|.+|++|..+++-.
T Consensus         3 SiVA~~dI~~G~~lt~~~l~~Krp~p~GI~p~~~---------~~iIGKk~kkdi~~d~~L~~d~ik~   61 (64)
T d1opsa_           3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPFAEM---------SQLVGKQVNTPVAKGQTLMPNMVKT   61 (64)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGG---------GGTTTCBBSSCBCTTCBCCGGGBTT
T ss_pred             CEEECCCCCCCCCCCHHHEEEEECCCCCCCHHHH---------HHHCCHHHHCCCCCCCCCCHHHHHC
T ss_conf             6786773289889257885787167887098899---------9974857523306988518999412


No 2  
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=97.56  E-value=4e-05  Score=45.83  Aligned_cols=56  Identities=18%  Similarity=0.217  Sum_probs=46.8

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHH-CCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHC
Q ss_conf             9997263688966275341315525133-79200002112454000035044202278871255550
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL  113 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~-~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l  113 (263)
                      =++|++||++|+.|+.+|+.+.. |... +++..         .+++.|+.+..++.+|++|..++|
T Consensus        11 Siva~~~I~kG~~i~~~dl~~~R-P~~ggi~p~~---------~~~viGk~~~~~i~~~~~I~~~dl   67 (68)
T d2zdra1          11 SVVADKDIKKGELLSGDNLWVKR-PGNGDFSVNE---------YETLFGKVAACNIRKGAQIKKTDI   67 (68)
T ss_dssp             EEEESSCBCTTCBCCTTTEEEES-CSCSSSBGGG---------GGGGTTCBBSSCBCTTCBCCGGGB
T ss_pred             EEEECCCCCCCCEECHHHEEEEC-CCCCCCCHHH---------HHHHCCCEECCCCCCCCCCCHHHC
T ss_conf             48990434899995279967988-8799489859---------988659226444589492897987


No 3  
>d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=97.11  E-value=0.00021  Score=41.53  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCH---HHCCCHHCCCCCCCCCCHHCC-CCEEECCCCCCCCCCHHHCCC
Q ss_conf             99972636889662753413155251---337920000211245400003-504420227887125555001
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPE---ENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVD  115 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~---~~~p~~a~~~~~~~~~~~~~~-G~~~~~~i~~G~~i~~~~l~~  115 (263)
                      -++|++||.+|+.|+.+|+...+ |.   .-+++..         .+.+. |+.+..++.+|++|+.++|..
T Consensus         9 Si~a~kdi~kG~~it~~di~~~R-Pg~~~~Gi~p~~---------~~~ii~Gkk~~~~i~~g~~i~~~di~~   70 (72)
T d1vlia1           9 GIFTTAPIQKGEAFSEDNIAVLR-PGQKPQGLHPRF---------FELLTSGVRAVRDIPADTGIVWDDILL   70 (72)
T ss_dssp             EEEESSCBCTTCBCCTTTEEEEC-CTTSCCCBCGGG---------HHHHHTTCBCSSCBCTTCBCCGGGTSC
T ss_pred             EEEEECCCCCCCCCCHHHEEEEC-CCCCCCCCCHHH---------HHHHHCCCEECCCCCCCCCCCHHHCCC
T ss_conf             38891422888991678867877-888888859899---------999767948846338969369999020


No 4  
>d1ucsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId: 8201]}
Probab=97.04  E-value=0.00029  Score=40.78  Aligned_cols=58  Identities=10%  Similarity=0.117  Sum_probs=47.4

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCC
Q ss_conf             9997263688966275341315525133792000021124540000350442022788712555500
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV  114 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~  114 (263)
                      =+||++.||.|+.||..|++.+-.-..-+|...+         .+++|+.++..+..|+.|.++++-
T Consensus         4 SVVA~q~ip~gt~LT~~mm~~KV~eP~Gipae~~---------~~iVGkqvn~~V~edetim~~mvk   61 (64)
T d1ucsa_           4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAEEI---------PKLVGMQVNRAVPLGTTLMPDMVK   61 (64)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGH---------HHHTTCBBSSCBCTTCBCCGGGBT
T ss_pred             CEEEEEEECCCCCCCHHHHHEEECCCCCCCHHHH---------HHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             1577412078754347674123127888898999---------998748871051689853366563


No 5  
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=56.73  E-value=4  Score=16.39  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             2798279999716010345621789889999950
Q gi|254780728|r  125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR  158 (263)
Q Consensus       125 l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~  158 (263)
                      ++.|..+-++.+....-.-+.++|||+|.|.-..
T Consensus       183 ~~~G~~Pr~i~v~l~~dlvd~~~pGd~V~i~GI~  216 (239)
T d1ltla_         183 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTL  216 (239)
T ss_dssp             CCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEE
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEE
T ss_conf             7889999679999960302865899999999999


No 6  
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}
Probab=39.87  E-value=5.9  Score=15.38  Aligned_cols=15  Identities=13%  Similarity=0.346  Sum_probs=11.6

Q ss_pred             EEECCCCCCCCEECH
Q ss_conf             997263688966275
Q gi|254780728|r   49 LISKGDLAVGMVVTP   63 (263)
Q Consensus        49 ~va~~di~~G~~It~   63 (263)
                      +.|+++|++|+.|..
T Consensus        18 vfA~~~i~~g~~i~~   32 (119)
T d2g46a1          18 VFARKSFEKGELVEE   32 (119)
T ss_dssp             EEECSCBCTTCCCEE
T ss_pred             EEECCHHHCCCEEEC
T ss_conf             998952437977724


No 7  
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}
Probab=36.39  E-value=8.3  Score=14.54  Aligned_cols=14  Identities=14%  Similarity=0.183  Sum_probs=9.2

Q ss_pred             EEECCCCCCCCEEC
Q ss_conf             99726368896627
Q gi|254780728|r   49 LISKGDLAVGMVVT   62 (263)
Q Consensus        49 ~va~~di~~G~~It   62 (263)
                      +.|.++|++|+.|-
T Consensus       139 v~a~~~I~kGt~I~  152 (284)
T d1ml9a_         139 VKCPVNIKRGQFVD  152 (284)
T ss_dssp             EECSSCBCTTCEEE
T ss_pred             EEECCCCCCCCEEE
T ss_conf             85587718999999


No 8  
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.03  E-value=14  Score=13.12  Aligned_cols=15  Identities=27%  Similarity=0.220  Sum_probs=10.6

Q ss_pred             EEECCCCCCCCEECH
Q ss_conf             997263688966275
Q gi|254780728|r   49 LISKGDLAVGMVVTP   63 (263)
Q Consensus        49 ~va~~di~~G~~It~   63 (263)
                      +.|+++|++|+.|.+
T Consensus        37 lFA~~~I~kG~~I~~   51 (171)
T d2f69a2          37 LFSKVAVGPNTVMSF   51 (171)
T ss_dssp             EEESSCBCTTCEEEE
T ss_pred             HCCCCCCCCCCEEEE
T ss_conf             100864479999998


No 9  
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=24.79  E-value=14  Score=13.12  Aligned_cols=16  Identities=19%  Similarity=0.100  Sum_probs=13.7

Q ss_pred             EEEEEECCCCCCCCEE
Q ss_conf             4899972636889662
Q gi|254780728|r   46 INVLISKGDLAVGMVV   61 (263)
Q Consensus        46 v~V~va~~di~~G~~I   61 (263)
                      =.=++|++||++|+.|
T Consensus        32 GrGl~AtrdI~~Ge~i   47 (261)
T d2h2ja2          32 GLGLVALKDISRNDVI   47 (261)
T ss_dssp             EEEEECSSCCCTTCEE
T ss_pred             EEEEEECCCCCCCCEE
T ss_conf             4589988757999999


No 10 
>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}
Probab=19.66  E-value=18  Score=12.58  Aligned_cols=10  Identities=20%  Similarity=0.634  Sum_probs=0.0

Q ss_pred             CCCCCEEEEE
Q ss_conf             1789889999
Q gi|254780728|r  146 IKPNDHVDVV  155 (263)
Q Consensus       146 i~pGd~VDV~  155 (263)
                      ++.||||-||
T Consensus        64 L~~gDRVEIY   73 (77)
T d2hj1a1          64 LKEGDRIEIY   73 (77)
T ss_dssp             CCTTCEEEEC
T ss_pred             CCCCCEEEEE
T ss_conf             7899999995


Done!