BLAST/PSIBLAST alignment of GI: 254780728 and GI: 15887574 at iteration 1
>gi|15887574|ref|NP_353255.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 268
>gi|15155111|gb|AAK86040.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 268
 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/270 (42%), Positives = 166/270 (61%), Gaps = 10/270 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           MK +R++ + V+ V A +AG++AM++     V  + E +I + P   +NVLIS  +L VG
Sbjct: 1   MKPSRIVILSVALVAAGLAGLVAMQISGAKQVIEKAETIIQKEPT--VNVLISSVNLPVG 58

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  + + W  +P+ NV D FI    +P+A+ EL G +VR+P+ +G+PIR EK+VD   
Sbjct: 59  SRLNDSSMRWTPWPQGNVVDSFITQAKRPDAITELAGTVVRLPLFEGEPIRPEKVVDSST 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             +SSLLP GKRA   +IS+S+  GG + PND VDV+MVR           VL+N+RV+A
Sbjct: 119 RIMSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGENGNFLTENVLNNVRVLA 178

Query: 179 IDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDS 234
           ID  I   E     +VG+TATLELTP QAK +  AQ +A +L+L LRS+AD   + +  +
Sbjct: 179 IDQQIKEGEDGIAAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSA 238

Query: 235 DVWDVQEEGK-EIQIIKAGVIVNKDGEGIS 263
                   G+ EIQ+IK+G IV K G+G S
Sbjct: 239 GHLLSGSSGQPEIQVIKSGSIV-KSGQGAS 267