BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
         (263 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040405|gb|ACT57201.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 263

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV
Sbjct: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG
Sbjct: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID
Sbjct: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
           HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ
Sbjct: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240

Query: 241 EEGKEIQIIKAGVIVNKDGEGIS 263
           EEGKEIQIIKAGVIVNKDGEGIS
Sbjct: 241 EEGKEIQIIKAGVIVNKDGEGIS 263


>gi|315121892|ref|YP_004062381.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495294|gb|ADR51893.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 267

 Score =  328 bits (840), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 164/266 (61%), Positives = 213/266 (80%), Gaps = 3/266 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK TRLMG+VVSG+FAL+AGIIAMRLVS HH+Q EE++ +   +  NVL++K +L VGMV
Sbjct: 1   MKFTRLMGLVVSGLFALLAGIIAMRLVSHHHLQKEEIVAQPSIRLSNVLMAKSNLKVGMV 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +TP++LEWVAFP ENV  GF+DDV +PNA++EL G +VR+PILKGDPIR EKLVD G  G
Sbjct: 61  ITPDVLEWVAFPAENVVVGFVDDVSRPNAIEELKGSIVRIPILKGDPIRFEKLVDHGQHG 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLL KGKRA  +DIS+S+AVGG++KPNDHVDV+MVR + ERK    VVLSN+RV+AID
Sbjct: 121 VSSLLSKGKRAVALDISVSNAVGGLVKPNDHVDVLMVRLIGERKTKTDVVLSNVRVLAID 180

Query: 181 HNIDS--DERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVW 237
             +D+  +   L+G+TATLELTPMQAK L+AAQ +A KL+LVLRSI+D + +  E +D  
Sbjct: 181 QTLDAEGEPNGLIGNTATLELTPMQAKTLLAAQQIASKLTLVLRSISDFHSTDLEIADFN 240

Query: 238 DVQEEGKEIQIIKAGVIVNKDGEGIS 263
             ++ G+ IQ+IK+G+I NKDGE +S
Sbjct: 241 LGEDGGRGIQVIKSGIISNKDGEEMS 266


>gi|222084468|ref|YP_002542997.1| pilus assembly protein [Agrobacterium radiobacter K84]
 gi|221721916|gb|ACM25072.1| pilus assembly protein [Agrobacterium radiobacter K84]
          Length = 270

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 162/261 (62%), Gaps = 7/261 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH-VQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R+M + V+ V A +AG++AM L    + VQ  E + E  A  +NVL++  +L VG 
Sbjct: 1   MKPARIMILAVAVVTAGLAGLLAMHLAGSRNIVQQVETVVEKEAT-VNVLVADANLPVGS 59

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +    + W+A+P+  V  G I    +P+A+++L+G +VR+PI +G+PIR EK+ D  + 
Sbjct: 60  RLNEKSIHWMAWPQSGVVKGLITQAERPDALKDLNGAVVRLPIFEGEPIREEKVADASSR 119

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            LSSLLP GKRA   +IS+++  GG I PND VDV+MVR    +K     VLSN+R++A+
Sbjct: 120 ILSSLLPSGKRAVATEISVATGAGGFILPNDRVDVIMVRKGDTQKFVTETVLSNVRILAV 179

Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADL-NPSSSEDS 234
           D  I+  +   + +VG+TATLELTP Q K L  AQ +A +L+L LRS+AD   P ++   
Sbjct: 180 DQQIEEKQDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLTLALRSVADAQQPDTTAAD 239

Query: 235 DVWDVQEEGKEIQIIKAGVIV 255
            +      G  +Q+IK+G I+
Sbjct: 240 YLLSGDNGGAVVQVIKSGAII 260


>gi|325291660|ref|YP_004277524.1| components of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059513|gb|ADY63204.1| components of type IV pilus [Agrobacterium sp. H13-3]
          Length = 268

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/270 (42%), Positives = 165/270 (61%), Gaps = 10/270 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           MK +R++ + V+ V A +AGI+AM++     V  + E +I + P   +NVL+S  +L VG
Sbjct: 1   MKPSRIVILSVALVAAGLAGIVAMQISGAKQVIEKAETIIEKEPT--VNVLVSSVNLPVG 58

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  + + W  +P  NV D FI +   PNA+ EL G +VR+P+ +G+P+R EK+VD   
Sbjct: 59  SRLNDSSVHWTPWPTGNVIDSFITEAKNPNAITELSGAVVRLPLFQGEPVRPEKVVDSST 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             +SSLLP GKRA   +IS+S+  GG + PND VDV+MVR           VL+N+RV+A
Sbjct: 119 RIMSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGDSGHFLTENVLNNVRVLA 178

Query: 179 IDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDS 234
           ID  I   E     +VG+TATLELTP QAK +  AQ +A +L+L LRS+AD   + +  +
Sbjct: 179 IDQQIKEGEDGTSAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSA 238

Query: 235 DVWDVQEEGK-EIQIIKAGVIVNKDGEGIS 263
                   G+ EIQ+IK+G IV K G+G S
Sbjct: 239 GYLLNGGSGQPEIQVIKSGSIV-KAGQGAS 267


>gi|227823970|ref|YP_002827943.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234]
 gi|227342972|gb|ACP27190.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234]
          Length = 271

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/264 (39%), Positives = 164/264 (62%), Gaps = 7/264 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++ + V+   A +AG++AM+L  SP     E ++ + P+  INVL++   L VG 
Sbjct: 1   MKPVRIIILAVAVGSAAMAGLLAMKLTRSPAQRMAEPLVEQAPS--INVLVASKSLPVGS 58

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +  + + W+A+P++ V +G I + ++P A+ +L G +VR+P+  G+P+R EK+ D  N 
Sbjct: 59  RLGADSIHWLAWPKDGVAEGMITEENRPAAIDDLAGAVVRLPLFDGEPVRQEKIADPSNR 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            +SSLLP GKRA   +I++++  GG I PND VDV+MVR           VLSN+RV+AI
Sbjct: 119 IMSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDVYLTETVLSNVRVLAI 178

Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  +   D   + ++G+TATLELTP Q+K +  AQ +A ++SL LRS+AD   + +E +D
Sbjct: 179 DQQVEEKDDGSKSVIGTTATLELTPDQSKVMTVAQQMAERISLALRSVADAQEADTEAAD 238

Query: 236 VWDVQEEGKEIQIIKAGVIVNKDG 259
                +    IQ+IK+G IV  DG
Sbjct: 239 YLLSGDGQPSIQVIKSGSIVKNDG 262


>gi|15887574|ref|NP_353255.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155111|gb|AAK86040.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 268

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/270 (42%), Positives = 166/270 (61%), Gaps = 10/270 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           MK +R++ + V+ V A +AG++AM++     V  + E +I + P   +NVLIS  +L VG
Sbjct: 1   MKPSRIVILSVALVAAGLAGLVAMQISGAKQVIEKAETIIQKEPT--VNVLISSVNLPVG 58

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  + + W  +P+ NV D FI    +P+A+ EL G +VR+P+ +G+PIR EK+VD   
Sbjct: 59  SRLNDSSMRWTPWPQGNVVDSFITQAKRPDAITELAGTVVRLPLFEGEPIRPEKVVDSST 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             +SSLLP GKRA   +IS+S+  GG + PND VDV+MVR           VL+N+RV+A
Sbjct: 119 RIMSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGENGNFLTENVLNNVRVLA 178

Query: 179 IDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDS 234
           ID  I   E     +VG+TATLELTP QAK +  AQ +A +L+L LRS+AD   + +  +
Sbjct: 179 IDQQIKEGEDGIAAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSA 238

Query: 235 DVWDVQEEGK-EIQIIKAGVIVNKDGEGIS 263
                   G+ EIQ+IK+G IV K G+G S
Sbjct: 239 GHLLSGSSGQPEIQVIKSGSIV-KSGQGAS 267


>gi|15963893|ref|NP_384246.1| putative pilus assembly signal peptide protein [Sinorhizobium
           meliloti 1021]
 gi|307315790|ref|ZP_07595304.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
 gi|307320425|ref|ZP_07599842.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|15073068|emb|CAC41527.1| Putative pilus assembly signal peptide protein [Sinorhizobium
           meliloti 1021]
 gi|306893991|gb|EFN24760.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|306898558|gb|EFN29231.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
          Length = 269

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 5/263 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+  R++ + V+   A +AG++AM+L      QT E + E  A  INVL++   L VG  
Sbjct: 1   MRPVRIIILAVAIGSAAMAGLLAMKLTRAPAPQTAEPVIEQ-APTINVLVAGKSLPVGSR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W A+P++ V +G I + ++P A+++L G +VR+PI  G+P+R EK+ D  N  
Sbjct: 60  LGADSIHWKAWPKDGVAEGMITEENRPAAVEDLAGAVVRLPIFTGEPVRQEKIADASNRI 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +I++++  GG I PND VDV+MVR           VLSN+RV+AID
Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I+  E   + +VG+TATLELTP Q+K +  AQ +A ++SL LRS+AD     +  +D 
Sbjct: 180 QQIEEKEDGSKAVVGTTATLELTPDQSKVMTVAQQMADRISLALRSVADAQEPDTTAADY 239

Query: 237 WDVQEEGKEIQIIKAGVIVNKDG 259
               +    IQ+IK+G IV  DG
Sbjct: 240 LLNGDGRPSIQVIKSGSIVKGDG 262


>gi|222147183|ref|YP_002548140.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734173|gb|ACM35136.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 269

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/232 (42%), Positives = 146/232 (62%), Gaps = 7/232 (3%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
           Q+E V+T+ P     VLI+   L VG  +T   + W+ +P+ ++ DGF+ + ++P A+ +
Sbjct: 36  QSEPVVTKEPT--TKVLIAAASLPVGARLTDKAMRWMDWPKTDLVDGFVTEENRPQALSD 93

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           L G++VR+PI +G+PIR+EK+ D  +  LS+LLP GKRA + +IS+++  GG I PND V
Sbjct: 94  LAGLVVRLPIFEGEPIRIEKIADASSRTLSALLPAGKRAISTEISVATGAGGFILPNDRV 153

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVA 209
           DV+MVR           VLSN+RV+AID  I+      R ++G+TATLELTP Q K L  
Sbjct: 154 DVIMVRKGDNDNHLTETVLSNVRVLAIDQQIEEKNDGTRSVIGTTATLELTPEQTKVLTV 213

Query: 210 AQSVA-KLSLVLRSIADLNPS-SSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259
           AQ +A +LSL LRS+AD     +S  S +      G ++Q+IK+G IV   G
Sbjct: 214 AQQMAERLSLALRSVADAQEQDNSSASYLLSGDSGGPQVQVIKSGQIVKSAG 265


>gi|150398540|ref|YP_001329007.1| SAF domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150030055|gb|ABR62172.1| SAF domain protein [Sinorhizobium medicae WSM419]
          Length = 269

 Score =  178 bits (451), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 160/264 (60%), Gaps = 7/264 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++ + V+   A +AG++AM+L  +P     E VI + P   INVL++   L VG 
Sbjct: 1   MKPVRIIILAVAVGSAAMAGLLAMKLTRAPAARMAEPVIEQAPT--INVLVAGKSLPVGS 58

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +  + + W A+P++ + +G I +  +P+A+ +L G +VR+PI  G+P+R EK+ D  N 
Sbjct: 59  RLGADSIHWKAWPKDGIAEGMITEETRPSAVDDLAGAVVRLPIFTGEPVRQEKIADASNR 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            +SSLLP GKRA   +I++++  GG I PND VDV+MVR           VLSN+RV+AI
Sbjct: 119 IMSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAI 178

Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I+  E   + +VG+TATLELTP Q+K +   Q +A ++SL LRS+AD     +  +D
Sbjct: 179 DQQIEEKEDGTKAVVGTTATLELTPDQSKVMTVTQQMADRISLALRSVADAQEPDTTAAD 238

Query: 236 VWDVQEEGKEIQIIKAGVIVNKDG 259
                +    IQ+IK+G IV  DG
Sbjct: 239 HLLNGDGQPSIQVIKSGSIVKGDG 262


>gi|209551758|ref|YP_002283675.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537514|gb|ACI57449.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 271

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 104/244 (42%), Positives = 150/244 (61%), Gaps = 10/244 (4%)

Query: 21  IIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
            +AM++     V  Q + VI + P   +N+L+S  +LAVG  +    + W+ +P+  V  
Sbjct: 21  FLAMQMAGNGGVVTQVQSVIEKEPT--VNILVSSANLAVGERLDDKSVHWMPWPQGGVVP 78

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
           G I +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  LSSLLP GKRA   +IS+
Sbjct: 79  GLITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSNSRILSSLLPAGKRAVATEISV 138

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGST 194
           ++  GG I PND VDV+MVR  +E    +T  VLSN+RV+AID  I   D   + +VG+T
Sbjct: 139 ATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKAVVGTT 198

Query: 195 ATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAG 252
           ATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D     + G   IQ+IK+G
Sbjct: 199 ATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSG 258

Query: 253 VIVN 256
            IV 
Sbjct: 259 AIVT 262


>gi|190889880|ref|YP_001976422.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|218509313|ref|ZP_03507191.1| pilus assembly protein [Rhizobium etli Brasil 5]
 gi|190695159|gb|ACE89244.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|327194695|gb|EGE61541.1| pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 271

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/244 (44%), Positives = 152/244 (62%), Gaps = 10/244 (4%)

Query: 24  MRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           MR+     V  Q + VI + P   +NVL+S G+LAVG  +    + W+A+P+  V  G I
Sbjct: 24  MRMAGSGGVVTQVQSVIEKEPT--VNVLVSSGNLAVGQRLEEGSVHWMAWPQGGVVPGLI 81

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141
            ++ +P+A+++L G +VR+PI +G+PIR EK+ D  +  LSSLLP GKRA   +IS+++ 
Sbjct: 82  TEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSSLLPAGKRAVATEISVATG 141

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATL 197
            GG I PND VDV+MVR  +E    +T  VLSN+RV+AID  I   D   + +VG+TATL
Sbjct: 142 AGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKAVVGTTATL 201

Query: 198 ELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAGVIV 255
           ELTP Q K L  AQ +A +LSL LRS+AD     +  +D     + G   IQ+IK+G IV
Sbjct: 202 ELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSGSIV 261

Query: 256 NKDG 259
              G
Sbjct: 262 TDAG 265


>gi|163757626|ref|ZP_02164715.1| pilus assembly protein [Hoeflea phototrophica DFL-43]
 gi|162285128|gb|EDQ35410.1| pilus assembly protein [Hoeflea phototrophica DFL-43]
          Length = 269

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/245 (41%), Positives = 154/245 (62%), Gaps = 12/245 (4%)

Query: 22  IAMRLVSP----HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           +AM L +P    + +    VI + P   ++VL+    L VG  +    +EW  +PE+ V 
Sbjct: 22  LAMNLTAPTVQVNEISATPVIEKMPT--LDVLVVSASLPVGARLNEETMEWKGWPEDAVT 79

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
           +G I    +P+A+ EL G +VR+P+  G+P+R EK+VD  +  +SSLLP GKRA   +IS
Sbjct: 80  EGLIRRESRPDAITELTGSIVRLPLFTGEPLRPEKIVDSSSRIMSSLLPAGKRAIATEIS 139

Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNIDSD---ERVLVGS 193
           ++++ GG I PND VDV+MVR  +E++  +T V+LSNIRV+AID  I+ D    R  VG+
Sbjct: 140 VATSAGGFILPNDRVDVIMVRRKTEQEGFLTEVILSNIRVLAIDQRIEEDAQGNRTAVGT 199

Query: 194 TATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKA 251
           TATLELTP Q+K +  AQ +A +L+L LRS+AD+    ++ +      E+G   IQ+I++
Sbjct: 200 TATLELTPDQSKIITVAQQMADRLTLALRSVADVQEPDTDGAKHLLSGEDGTSAIQLIRS 259

Query: 252 GVIVN 256
           G I N
Sbjct: 260 GAITN 264


>gi|86355863|ref|YP_467755.1| pilus assembly protein [Rhizobium etli CFN 42]
 gi|86279965|gb|ABC89028.1| pilus assembly protein [Rhizobium etli CFN 42]
          Length = 271

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/244 (43%), Positives = 152/244 (62%), Gaps = 10/244 (4%)

Query: 24  MRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           MR+     V  Q + VI + P   +N+L+S  +L VG  +  + + W+A+P+E V  GFI
Sbjct: 24  MRMAGSGGVVTQVQSVIKKEPT--VNILVSNKNLPVGARLGDDSVHWMAWPKEGVVQGFI 81

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141
            +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  LSSLLP GKRA   +IS+++ 
Sbjct: 82  TEADRPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSSLLPAGKRAVATEISVATG 141

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATL 197
            GG I PND VDV+MVR  +E    +T  VLSN+RV+AID  I   D   + +VG+TATL
Sbjct: 142 AGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKTVVGTTATL 201

Query: 198 ELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAGVIV 255
           ELTP Q K L  AQ +A +LSL LRS+AD     +  +D     + G   IQ+IK+G IV
Sbjct: 202 ELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSGAIV 261

Query: 256 NKDG 259
              G
Sbjct: 262 TDAG 265


>gi|241207156|ref|YP_002978252.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861046|gb|ACS58713.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 271

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 146/233 (62%), Gaps = 8/233 (3%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
           Q   V+ + P   +N+L+S G+L+VG  +    + W+A+P+  V  G I +  +P+A+++
Sbjct: 35  QVRSVVEKEPT--VNILVSSGNLSVGARLDDQAVHWMAWPQGGVVPGLITETDKPDAIKD 92

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           L G +VR+PI +G+PIR EK+ D  +  LSSLLP GKRA   +IS+++  GG I PND V
Sbjct: 93  LQGAVVRLPIFEGEPIRPEKIADSSSRILSSLLPAGKRAVATEISVATGAGGFILPNDRV 152

Query: 153 DVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALV 208
           DV+MVR  +E    +T  VLSN+RV+AID  I   D   + +VG+TATLELTP Q K L 
Sbjct: 153 DVIMVRKGAEADKLITETVLSNVRVLAIDQQIQEKDDGSKSVVGTTATLELTPDQTKVLA 212

Query: 209 AAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAGVIVNKDG 259
            AQ +A +LSL LRS+AD     +  +D     + G   IQ+IK+G IV   G
Sbjct: 213 VAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSGAIVTDAG 265


>gi|116249980|ref|YP_765818.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254628|emb|CAK05702.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 271

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 100/230 (43%), Positives = 144/230 (62%), Gaps = 8/230 (3%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
           Q   V+ + P   +N+L+S  +L+VG  +    + W+A+P+  V  G I +  +P+A+++
Sbjct: 35  QVRSVVEKEPT--VNILVSSANLSVGARLDDQSVHWMAWPQGGVVPGLITEADKPDAVKD 92

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           L G +VR+PI +G+PIR EK+ D  +  LSSLLP GKRA   +IS+++  GG I PND V
Sbjct: 93  LQGAVVRLPIFEGEPIRPEKIADSSSRILSSLLPAGKRAVATEISVATGAGGFILPNDRV 152

Query: 153 DVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALV 208
           DV+MVR  +E    +T  VLSN+RV+AID  I   D   + +VG+TATLELTP Q K L 
Sbjct: 153 DVIMVRKGAEADKLITETVLSNVRVLAIDQQIQEKDDGSKSVVGTTATLELTPDQTKVLA 212

Query: 209 AAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAGVIVN 256
            AQ +A +LSL LRS+AD     +  +D     + G   IQ+IK+G IV 
Sbjct: 213 VAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSGAIVT 262


>gi|218671060|ref|ZP_03520731.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56]
          Length = 214

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 132/203 (65%), Gaps = 6/203 (2%)

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           + + W+A+P++ V  GFI +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  LSS
Sbjct: 7   DTVHWMAWPKDGVVQGFITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSS 66

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHN 182
           LLP GKRA   +IS+++  GG I PND VDV+MVR  +E    +T  VLSN+RV+AID  
Sbjct: 67  LLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQ 126

Query: 183 I---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWD 238
           I   D   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D   
Sbjct: 127 IQEQDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAADYLL 186

Query: 239 VQEEGKE-IQIIKAGVIVNKDGE 260
             + G   IQ+IK+G IV   GE
Sbjct: 187 SGDNGSAIIQVIKSGSIVTDAGE 209


>gi|153008058|ref|YP_001369273.1| SAF domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559946|gb|ABS13444.1| SAF domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 271

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/250 (39%), Positives = 136/250 (54%), Gaps = 24/250 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ + A  AG IAM L +P              K  +VL++  +L VG  
Sbjct: 1   MKSARLLILGVAVLAAGGAGYIAMNLAAPPPAPVVVAPETPQMKLEDVLVATENLGVGAE 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   + W  +P E V DG+I    +P+A+ +L G  VR+    G+PIR  KL+  G   
Sbjct: 61  LTSQ-MRWQPWPAEAVSDGYITRASEPDAINQLSGATVRLQFFTGEPIRKTKLIGPGQSF 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----------TVTVV 170
           +SS+LP G RA    I+  S+ GG I PND VDV+M R    RKP          T   V
Sbjct: 120 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTR----RKPDNGDKSLTPFTTETV 175

Query: 171 LSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADL 226
           L N+RV+AID  I  DE   +V+VG TATLE+TP QA+ +  AQ +A +L+L LRS  D+
Sbjct: 176 LQNVRVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDV 235

Query: 227 NPSSSEDSDV 236
                ED D+
Sbjct: 236 -----EDKDI 240


>gi|239833238|ref|ZP_04681567.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301]
 gi|239825505|gb|EEQ97073.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301]
          Length = 279

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 136/250 (54%), Gaps = 24/250 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ + A  AG IAM L +P              K  +VL++  +L VG  
Sbjct: 9   MKSARLLILGVAVLAAGGAGYIAMNLATPPPAPVVAAPEAPQIKLEDVLVATENLGVGAE 68

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   + W  +P E + +G+I    +P+A+ +L G  VR+    G+PIR  KL+  G   
Sbjct: 69  LTSQ-MRWQPWPAEAISEGYITRASEPDAINQLSGATVRLQFFTGEPIRKAKLIGPGQSF 127

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----------TVTVV 170
           +SS+LP G RA    I+  S+ GG I PND VDV+M R    RKP          T   V
Sbjct: 128 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTR----RKPDNGDKSLTPFTTETV 183

Query: 171 LSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADL 226
           L N+RV+AID  I  DE   +V+VG TATLE+TP QA+ +  AQ +A +L+L LRS  D+
Sbjct: 184 LQNVRVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDV 243

Query: 227 NPSSSEDSDV 236
                ED D+
Sbjct: 244 -----EDRDI 248


>gi|92116014|ref|YP_575743.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14]
 gi|91798908|gb|ABE61283.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14]
          Length = 260

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 143/257 (55%), Gaps = 31/257 (12%)

Query: 14  VFALVAGIIAMRLVS-----PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
             A+ AG +A  L S     P   QT ++ T      ++VL++K D+ +G  VT N + W
Sbjct: 10  TIAVGAGGLAAYLASGSDKKPQPAQTAQLQT------VDVLVAKSDIPLGQAVTANDVAW 63

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPK 127
            A+P  +    FI    +P+A  +L G + R P + G+PIR  KLV  +G+G ++++LP 
Sbjct: 64  QAWPANSASSSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSGFMAAILPT 123

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVLSNIRVIAI 179
           G RA + +IS  +  GG I PND VDV++  S  ++ P            +LSN+RV+A+
Sbjct: 124 GMRAISTEISPETGAGGFILPNDRVDVIL--SQRDKNPDHPNANSVNSETILSNVRVLAV 181

Query: 180 DHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-PSSSEDSDV 236
           D  I+  + ++V+VG TATLEL P QA+ L  ++ +  LSL LRS+AD N P SS D   
Sbjct: 182 DQTIEEKNGQKVVVGKTATLELKPEQAEMLARSRQMGTLSLALRSLADANAPESSTDDQR 241

Query: 237 WDVQEEGKEIQIIKAGV 253
            D       I I++ GV
Sbjct: 242 RD------SINIVRYGV 252


>gi|90419763|ref|ZP_01227672.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335804|gb|EAS49552.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 293

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 11/223 (4%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           E P K   VL++  DL++G  V    L+W ++PE+ +    I    +P+A++ L G L R
Sbjct: 63  EPPIKLAEVLVTSRDLSMGEAVD-EALDWQSWPEDGIGPTLIRKSDRPDALETLKGSLAR 121

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
                G+P+R  KL+    G +S++LP GKRA  + I+  ++ GG + PNDHVDV+M R 
Sbjct: 122 QSFFAGEPVRESKLIRSDQGFMSAVLPAGKRAVAVQIAAETSAGGFVLPNDHVDVIMTRR 181

Query: 160 LSERKPT-----VTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQS 212
           +S  +          VL N+RV+AID  I     E+V+VGSTATLE+ P QA+AL AAQ 
Sbjct: 182 VSSSENRGDQVLTETVLRNLRVLAIDQTIQEKDGEKVVVGSTATLEVDPEQAEALTAAQQ 241

Query: 213 VA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGK--EIQIIKAG 252
           +A +L L LRS+AD  P S   +     QE  +  +I++++ G
Sbjct: 242 IADRLVLSLRSLADSVPGSPGYAAFLLAQENARNGKIRVVRYG 284


>gi|110636320|ref|YP_676528.1| pilus assembly protein cpaB [Mesorhizobium sp. BNC1]
 gi|110287304|gb|ABG65363.1| pilus assembly protein cpaB [Chelativorans sp. BNC1]
          Length = 270

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 136/242 (56%), Gaps = 13/242 (5%)

Query: 22  IAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           +A  L SP  V       E P     +VL+   D+ VG  +    + W A+P E+V D F
Sbjct: 22  LAKNLASPQKVAAVAPTPEKPPVSLTDVLVLTQDVPVGEPINGAAM-WQAWPAESVMDAF 80

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           I    +P+A++ +   + R+P+  G+P+R  KLV  G+  L+++LP GKRA    I+  +
Sbjct: 81  ITREREPDALETIRNAVARLPLFAGEPVRRSKLVGEGDSFLAAILPPGKRAVATRIAADT 140

Query: 141 AVGGMIKPNDHVDVVMVRSLSE-RKPT---VTVVLSNIRVIAIDHNIDSDE---RVLVGS 193
           + GG I PND VDV+M R   E   P       VL NIRV+AID  I  DE   RV +G 
Sbjct: 141 SAGGFILPNDRVDVIMTRRADEGSSPNGFITETVLENIRVLAIDQTIHEDEEGRRVKLGE 200

Query: 194 TATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGK--EIQIIK 250
           TATLELTP +A+ +  AQ +A +L+L LRS+AD N  ++ D  +  V   G+   +++IK
Sbjct: 201 TATLELTPEEAEVITVAQQLADRLTLSLRSVADSNEEAT-DRGLHLVTGTGRGDSVRLIK 259

Query: 251 AG 252
           +G
Sbjct: 260 SG 261


>gi|75674500|ref|YP_316921.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255]
 gi|74419370|gb|ABA03569.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255]
          Length = 275

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/253 (36%), Positives = 145/253 (57%), Gaps = 23/253 (9%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
             A+ AG +A  L S    +T+ V TE   + ++VL++K D+ +G  VT N + W  +P 
Sbjct: 25  TIAVGAGGLAAYLASGSDKETQPVQTEQ-LRTVDVLVAKSDIPLGQAVTANDVAWQTWPA 83

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAA 132
           ++    FI    +P+A  +L G + R P + G+PIR  KLV  +G+G ++++LP G RA 
Sbjct: 84  DSASHSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSGFMAAILPTGMRAI 143

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV----------TVVLSNIRVIAIDHN 182
           + +IS  +  GG I PND VDV+    LS+R+               VL N+RV+AID  
Sbjct: 144 STEISPETGAGGFILPNDRVDVI----LSKREKNADHASGDSVNSETVLGNVRVLAIDQT 199

Query: 183 ID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
           I+  + ++V+VG TATLEL P QA+ L  ++ +  LSL LRS+AD N   + + D+ D +
Sbjct: 200 IEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADAN---APEGDINDRR 256

Query: 241 EEGKEIQIIKAGV 253
            +   I +++ GV
Sbjct: 257 RD--SINVVRYGV 267


>gi|316933040|ref|YP_004108022.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1]
 gi|315600754|gb|ADU43289.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1]
          Length = 266

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 129/223 (57%), Gaps = 16/223 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           + + VL++K D+ +G  V P  L+W  +P       FI    QPNA  +L G + R P +
Sbjct: 47  QTVEVLVAKNDIPLGQAVAPGDLQWQTWPSATASSHFIRRNDQPNATTDLAGSIARSPFI 106

Query: 104 KGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLS 161
            G+PIR +KLV   G+G ++++LP G RA + +IS  +  GG I PND VDV++  R  +
Sbjct: 107 AGEPIREQKLVKANGSGFMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKREKN 166

Query: 162 ERKPT-----VTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVA 214
             +P+       ++LSN+RV+A+D  I+  + ++V+VG TATLEL P QA+ L  A+   
Sbjct: 167 SDRPSGEQIVSEIILSNVRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEYLARARQSG 226

Query: 215 KLSLVLRSIADL-NPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
            L+L LRS+AD   PS++E+    D       + I++ GV   
Sbjct: 227 TLALALRSLADAGQPSTTENDAKRD------SVNIVRYGVTTQ 263


>gi|13474659|ref|NP_106228.1| pilus assembly protein cpaB [Mesorhizobium loti MAFF303099]
 gi|14025414|dbj|BAB52014.1| pilus assembly protein; CpaB [Mesorhizobium loti MAFF303099]
          Length = 271

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 128/216 (59%), Gaps = 12/216 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL+  GD+A+G  +  NI  W ++P + V   FI   + P+A+++L G + RVP+  G+
Sbjct: 49  DVLVLSGDVAMGNALQNNI-SWQSWPADGVNANFITKANAPDALEKLKGSIARVPMYAGE 107

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           P+R  KL+  G   +SS+LP G RA    IS  ++ GG I PND VDV+M R       +
Sbjct: 108 PVRRSKLIGEGQSFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGS 167

Query: 167 ----VTVVLSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSL 218
                  +L NIRV+AID  I  DE   +  VG TATLELTP QA+ +  AQ +A +L+L
Sbjct: 168 TGFNTETILKNIRVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTL 227

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKE--IQIIKAG 252
            LR++AD    +  ++D + V   G++  +++IK+G
Sbjct: 228 ALRAVADTQEKNVGEAD-YLVSGNGRKGTVRLIKSG 262


>gi|218661134|ref|ZP_03517064.1| pilus assembly protein [Rhizobium etli IE4771]
          Length = 205

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 8/184 (4%)

Query: 24  MRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           MR+     V  Q + VI + P   +NVL+S G+LAVG  +    + W+A+P+  V  G I
Sbjct: 24  MRMAGSGGVVTQVQSVIEKEPT--VNVLVSSGNLAVGQRLEEGSVHWMAWPQGGVVPGLI 81

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141
            +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  LSSLLP GKRA   +IS+++ 
Sbjct: 82  TEAEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSSLLPAGKRAVATEISVATG 141

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATL 197
            GG I PND VDV+MVR  +E    +T  VLSN+RV+AID  I   D   + +VG+TATL
Sbjct: 142 AGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKAVVGTTATL 201

Query: 198 ELTP 201
           ELTP
Sbjct: 202 ELTP 205


>gi|170740622|ref|YP_001769277.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46]
 gi|168194896|gb|ACA16843.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46]
          Length = 268

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/202 (41%), Positives = 116/202 (57%), Gaps = 12/202 (5%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           ++VL++  DL +G  + P  L W A+P+ +V DGFI     P A+++  G  VR P L G
Sbjct: 46  VDVLVAAADLPMGQTLKPADLRWQAWPKGSVNDGFIQRGQNPRALEDTVGSFVRGPFLGG 105

Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
           +PIR EKL+   G+G LS++LP G RA   ++D   S+  GG I PND VDV+      E
Sbjct: 106 EPIRREKLIRANGSGFLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTYRDDE 165

Query: 163 RKPTVT-------VVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSV 213
                T        +L N+RV+A+   +   + ERV+ G TATLELTP Q + +  AQ V
Sbjct: 166 ASRATTSDVQVSETILQNVRVLAVGQTVQERNGERVVTGDTATLELTPAQTEQITLAQKV 225

Query: 214 AKLSLVLRSIADLNPSSSEDSD 235
            +LSL LRSIAD   S  E+ +
Sbjct: 226 GQLSLALRSIADAGISQPENPE 247


>gi|146338124|ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278]
 gi|146190930|emb|CAL74935.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. ORS278]
          Length = 248

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 125/220 (56%), Gaps = 17/220 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           ++VL++K D+ +G  + P +L+W ++P       FI    +P    E+ G + R P + G
Sbjct: 26  VDVLVAKADIGLGQSIKPELLQWQSWPASTASSSFIRRNERPEGQNEVTGTIARAPFIAG 85

Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           +PIR +KLV   G+G ++++LP G RA + +IS  +  GG I PND VDV++  S  ER 
Sbjct: 86  EPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPETGAGGFILPNDRVDVIL--SKRERN 143

Query: 165 P---------TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSV 213
           P         +  ++L+NIRV+AID        +  +VG T TLEL P QA+ L  A+  
Sbjct: 144 PDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTTVVGKTVTLELKPEQAETLARARQT 203

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253
             LSL LRSIAD+N  + + SD  D +  G  + +++ G+
Sbjct: 204 GTLSLALRSIADVN-MAEQRSD--DNRRRGDSVAVVRFGI 240


>gi|85713504|ref|ZP_01044494.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A]
 gi|85699408|gb|EAQ37275.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A]
          Length = 260

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/254 (35%), Positives = 147/254 (57%), Gaps = 25/254 (9%)

Query: 14  VFALVAGIIAMRLVS-----PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
             A+ AG +A  L S     P   QT ++ T      ++VL++K D+ +G  VT N + W
Sbjct: 10  TIAVGAGGLAAYLASGSDKKPQIAQTVQLPT------VDVLVAKSDIQLGQTVTANDVAW 63

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPK 127
             +P ++  + FI    +P+A  +L G + R P + G+PIR  KLV  +G+G ++++LP 
Sbjct: 64  QTWPADSASNSFIRRDRRPDATTQLAGSIARSPFIAGEPIREPKLVSAKGSGFMAAILPT 123

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPT-----VTVVLSNIRVIAIDH 181
           G RA + +IS  +  GG I PND VDV++ R   +   P+        +LSN+RV+A+D 
Sbjct: 124 GMRAISTEISPETGAGGFILPNDRVDVILSRRDRNADHPSGDSVNSETILSNVRVLAVDQ 183

Query: 182 NID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
            I+  + ++V+VG TATLEL P QA+ L  ++ +  LSL LRS+AD N   + +S++ D 
Sbjct: 184 TIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADAN---APESNIDDR 240

Query: 240 QEEGKEIQIIKAGV 253
           + +   I +++ GV
Sbjct: 241 RRD--SISVVRYGV 252


>gi|299132282|ref|ZP_07025477.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2]
 gi|298592419|gb|EFI52619.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2]
          Length = 273

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 122/197 (61%), Gaps = 9/197 (4%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL++K D+ +G  +T + ++W ++P       F+    + +A++++ G +VR P L G+
Sbjct: 45  DVLVAKSDIPLGQTITADDMKWQSWPAATASSSFVKKSERADAIKDMTGSIVRSPFLAGE 104

Query: 107 PIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           PIR  KLV   G+G ++++LP G RA + +IS  +  GG I PNDHVDV++ R    R+ 
Sbjct: 105 PIRETKLVKANGSGFMAAILPSGMRAISTEISPETGAGGFILPNDHVDVLLSRRQKSREG 164

Query: 166 -----TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
                +  ++LS++RV+AID  ++  + ++V+VG TATLEL P QA+ L  ++    LSL
Sbjct: 165 NGESVSSEIILSDVRVLAIDQTVEEKNGQKVVVGKTATLELKPAQAETLARSRQSGTLSL 224

Query: 219 VLRSIADLN-PSSSEDS 234
            LRS+ D N P   ED+
Sbjct: 225 ALRSLVDANKPGKVEDA 241


>gi|220922778|ref|YP_002498080.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
 gi|219947385|gb|ACL57777.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
          Length = 267

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 119/205 (58%), Gaps = 15/205 (7%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           A  ++VL++  DL +G ++ P  L W A+P+ ++ DGF+      NA+++  G  VR P 
Sbjct: 42  ADTVDVLVAAADLPMGQILKPGDLRWQAWPKTSLNDGFLQREQNANALEDTLGSFVRSPF 101

Query: 103 LKGDPIRLEKLVD-RGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMV-- 157
           L G+PIR EKL+   G+G LS++LP G RA   ++D   S+  GG I PND VDV+    
Sbjct: 102 LGGEPIRREKLIKANGSGFLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTHR 161

Query: 158 -----RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAA 210
                R+          +L N+RV+A+   +   + ERV+ G TATLELTP QA+ +  A
Sbjct: 162 DEEAARATKSDVQVTETILKNVRVLAVGQTVQERNGERVVTGDTATLELTPAQAEQITLA 221

Query: 211 QSVAKLSLVLRSIAD---LNPSSSE 232
           Q V +LSL LRS++D   + P S E
Sbjct: 222 QKVGQLSLALRSLSDAGQVQPESPE 246


>gi|218513094|ref|ZP_03509934.1| pilus assembly protein [Rhizobium etli 8C-3]
          Length = 202

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 117/181 (64%), Gaps = 8/181 (4%)

Query: 24  MRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           MR+     V  Q + VI + P   +NVL+S G+LAVG  +    + W+A+P+  V  G I
Sbjct: 24  MRMAGSGGVVTQVQSVIEKEPT--VNVLVSSGNLAVGQRLEEGSVHWMAWPQGGVVPGLI 81

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141
            ++ +P+A+++L G +VR+PI +G+PIR EK+ D  +  LSSLLP GKRA   +IS+++ 
Sbjct: 82  TEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSSLLPAGKRAVATEISVATG 141

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATL 197
            GG I PND VDV+MVR  +E    +T  VLSN+RV+AID  I   D   + +VG+TATL
Sbjct: 142 AGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKAVVGTTATL 201

Query: 198 E 198
           E
Sbjct: 202 E 202


>gi|260461950|ref|ZP_05810195.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
 gi|259032197|gb|EEW33463.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
          Length = 271

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 125/216 (57%), Gaps = 12/216 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL+  GD+A+G  +  NI  W  +P + +   FI     P+A+++L G + RV +  G+
Sbjct: 49  DVLVLSGDVAMGNQLENNI-AWQPWPADGINPNFITKATAPDALEKLKGSIARVGMYAGE 107

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           P+R  KL+  G   +SS+LP G RA    IS  ++ GG I PND VDV+M R       +
Sbjct: 108 PVRRSKLIGEGQSFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGS 167

Query: 167 ----VTVVLSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSL 218
                  +L NIRV+AID  I  DE   +  VG TATLELTP QA+ +  AQ +A +L+L
Sbjct: 168 TGFNTETILKNIRVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTL 227

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKE--IQIIKAG 252
            LR+I D    + +++D + V   G++  +++IK+G
Sbjct: 228 ALRAITDTQEKNVDEAD-YLVSGNGRKGTVRLIKSG 262


>gi|27375778|ref|NP_767307.1| CtpC protein [Bradyrhizobium japonicum USDA 110]
 gi|27348916|dbj|BAC45932.1| CtpC protein [Bradyrhizobium japonicum USDA 110]
          Length = 270

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 135/258 (52%), Gaps = 16/258 (6%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVI-TENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
           V AL AG +A  L S +  +    +        + VL++K D+ +G  V P  L+W ++P
Sbjct: 10  VIALGAGGVAAYLASGYDNKPAPALPVAEKLPTVEVLVAKNDIQLGQAVKPEDLQWQSWP 69

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRA 131
                  FI    +P A  ++ G + RVP+++G+PIR +KLV   G+G ++++LP G RA
Sbjct: 70  AATASGAFIRRDSRPEAQTQIAGSIARVPLMQGEPIREQKLVRAEGSGFMAAILPSGMRA 129

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTV-------TVVLSNIRVIAIDH 181
            + D++  ++ GG I PND VD+V+ R L       PT         V+L+NIRV+AID 
Sbjct: 130 VSTDVTAETSAGGFILPNDRVDIVLTRRLKNPDVNGPTAGNDLILSEVILTNIRVLAIDQ 189

Query: 182 NIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
                  +  +VG T TLEL P Q   L AA+    L L LRSI D N +     D+   
Sbjct: 190 APKEKDGQNAVVGKTVTLELKPDQVATLTAARQGGTLQLALRSIVDANATELTAEDLAIK 249

Query: 240 QEEGKEIQIIKAGVIVNK 257
           +  G  + +I+ GV V +
Sbjct: 250 RSGG--VNVIRYGVQVRQ 265


>gi|114705457|ref|ZP_01438365.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506]
 gi|114540242|gb|EAU43362.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506]
          Length = 282

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 136/237 (57%), Gaps = 16/237 (6%)

Query: 33  QTEEVI-----TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           Q E VI      + P K  +VLIS GD+ +GM    N L W  +P + + +GFI    +P
Sbjct: 40  QQEPVIITAAPAQPPVKLEDVLISSGDVPMGMRFD-NGLSWQKWPVDGIGEGFILKNDRP 98

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
            A+ EL+G + R     G+P+R  KL+   +G +S+LLP GKRA  + I+ ++A GG I 
Sbjct: 99  EAIDELNGSIARQAFFAGEPVRSSKLIQSDSGFMSALLPAGKRAVAVQIAAATAAGGFIL 158

Query: 148 PNDHVDVVMVRSL-----SERKPTVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELT 200
           PNDHVDV+M R +     +  K     VL N+RV+AID  I+  E  R +VGS ATLE+ 
Sbjct: 159 PNDHVDVIMTRRVEGDGGANAKILTETVLRNLRVLAIDQTIEDAEGQRNVVGSVATLEVD 218

Query: 201 PMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE--IQIIKAGVI 254
             QA+AL AAQ +A +  L LRS+AD  P S   +     +E+ +   ++I++ G +
Sbjct: 219 GEQAEALTAAQQIADRFVLSLRSLADSIPGSPGYAAFLLAEEKARRGPVRIVRYGKV 275


>gi|148256956|ref|YP_001241541.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1]
 gi|146409129|gb|ABQ37635.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. BTAi1]
          Length = 266

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 15/252 (5%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKF--INVLISKGDLAVGMVVTPNILEWVAF 71
             AL AG +A  LVS    Q + V     A+   + VL++K D+ +G  + P  L W  +
Sbjct: 10  TIALGAGGVAAYLVSTSESQ-QPVAVAPVAQLPTVEVLVAKNDIGLGQAIKPGDLVWQTW 68

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKR 130
           PE    + FI    +P A  +L G + R P + G+PIR +KLV   G+G ++++LP G R
Sbjct: 69  PEA-ASNIFIRRGDRPEAANQLVGTIARAPFVIGEPIREQKLVKSDGSGFMAAILPAGMR 127

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKP------TVTVVLSNIRVIAIDHNI 183
           A + +IS  +  GG I PND VDV++  R  +  KP      +  ++LSN+RV+AID   
Sbjct: 128 AISTEISPETGAGGFILPNDRVDVILSKRDKNPDKPGGPDYVSSEIILSNVRVLAIDQAP 187

Query: 184 DSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
              E    +VG T TLEL P QA+ L  A+    L+L LRSIAD+N +    ++   +  
Sbjct: 188 KEKEGQNTVVGKTVTLELKPEQAETLARARQSGSLALALRSIADVNAADGNKNET-QMAR 246

Query: 242 EGKEIQIIKAGV 253
            G  I+II+ G+
Sbjct: 247 RGNAIEIIRYGI 258


>gi|146342077|ref|YP_001207125.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278]
 gi|146194883|emb|CAL78908.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. ORS278]
          Length = 269

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/253 (36%), Positives = 133/253 (52%), Gaps = 14/253 (5%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
             AL AG +A  LVS    Q    +        + VL++K D+ +G  + P  L W  +P
Sbjct: 10  TIALGAGGVAAYLVSSSESQQPAPVAPVAQLPTVEVLVAKADIGLGQAIKPGDLIWQTWP 69

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRA 131
           E    + FI    +P A  +L G + R P + G+PIR +KLV   G+G ++++LP G RA
Sbjct: 70  EA-ASNIFIRRGDRPEAATQLVGSIARAPFVIGEPIREQKLVKSDGSGFMAAILPAGMRA 128

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVT------VVLSNIRVIAIDHNID 184
            + +IS  +  GG I PND VDV++  R  +  KP         ++LSN+RV+AID    
Sbjct: 129 ISTEISPETGAGGFILPNDRVDVILSRREKNPDKPAAADSIVSEIILSNVRVLAIDQAPK 188

Query: 185 SDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ-- 240
             E    +VG T TLEL P QA+ L  A+    L+L LRSIAD+N   +  ++    Q  
Sbjct: 189 EKEGQNTVVGKTVTLELKPEQAETLSRARQAGTLALALRSIADINAPDTGKTETEQQQMA 248

Query: 241 EEGKEIQIIKAGV 253
             G  I+II+ GV
Sbjct: 249 RRGNAIEIIRYGV 261


>gi|86748908|ref|YP_485404.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2]
 gi|86571936|gb|ABD06493.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2]
          Length = 265

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 121/201 (60%), Gaps = 15/201 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           + VL++K D+ +G  V P+ ++W  +P       FI    +P+A  +L G + R P + G
Sbjct: 44  VEVLVAKSDIPLGQPVGPSDVQWQTWPAATASSNFILRSERPDASVQLAGSIARSPFIAG 103

Query: 106 DPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           +PIR +KLV   G+G ++++LP G RA + +IS  +  GG I PND VDV++  S  ++ 
Sbjct: 104 EPIREQKLVKSNGSGFMAAILPTGMRAISTEISPETGAGGFILPNDRVDVIL--SKRDQN 161

Query: 165 P---------TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSV 213
           P            ++LSNIR++AID  ++  + ++V+VG TATLEL P QA+ L  A+  
Sbjct: 162 PDRVKGGDVVNSEIILSNIRILAIDQTVEEKNGQKVVVGKTATLELKPDQAEFLARARQS 221

Query: 214 AKLSLVLRSIADLN-PSSSED 233
             LSL LRS+AD N P+ +E+
Sbjct: 222 GTLSLALRSLADANAPARTEE 242


>gi|319785609|ref|YP_004145085.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171497|gb|ADV15035.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 270

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 122/216 (56%), Gaps = 12/216 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL+  GD+ +G  +  NI  W ++P + V   FI    +P A+ +L G + RV +  G+
Sbjct: 48  DVLVLSGDVPMGSPIQNNI-AWQSWPADGVNANFITRTAEPEALDKLKGSIARVAMYAGE 106

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           P+R  KL+  G   +SS+LP G RA    IS  ++ GG I PND VDV+M R        
Sbjct: 107 PLRRSKLIGEGQSFMSSILPSGMRAVATAISADTSAGGFILPNDFVDVIMTRRADAASGA 166

Query: 167 ----VTVVLSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSL 218
                  +L NIRV+AID  I  DE   +  VG TATLELTP QA+ +  AQ +A +L+L
Sbjct: 167 AGFNTETILKNIRVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTL 226

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKE--IQIIKAG 252
            LR++AD    +  ++D + V   G+   +++IK+G
Sbjct: 227 ALRAVADTQEKNVGEAD-YLVSGNGRRGTVRLIKSG 261


>gi|90425196|ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18]
 gi|90107210|gb|ABD89247.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18]
          Length = 265

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 137/252 (54%), Gaps = 16/252 (6%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
             A+ AG +A  L S    Q            ++VL++K D+ +G  +TP  ++W  +P 
Sbjct: 10  TIAVGAGGVAAYLASGADQQPPPAAPVAQLPTVDVLVAKSDIPLGQALTPGDVQWQVWPA 69

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAA 132
               + FI    +P+A  ++ G + R   + G+PIR  KLV   G+G ++++LP G RA 
Sbjct: 70  ATASEMFIRRNVRPDATTQIVGSIARSAFIAGEPIRDLKLVKANGSGFMAAILPSGMRAV 129

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------VVLSNIRVIAIDHNI 183
           + +IS  +  GG I PND VDV++  S  E+ P            ++LSNIRV+AID  I
Sbjct: 130 STEISPETGAGGFILPNDRVDVIL--SKREKNPDARASGDGVNSEIILSNIRVLAIDQTI 187

Query: 184 D--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
           +  + ++V+VG TATLEL P Q++ L  A+    LSL LRS+AD N + ++  D  D   
Sbjct: 188 EEKNGQKVVVGKTATLELKPEQSEGLARARQSGTLSLALRSLADANSAVADTPD--DRSA 245

Query: 242 EGKEIQIIKAGV 253
           +   I +++ GV
Sbjct: 246 KRDSINVVRFGV 257


>gi|148258234|ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1]
 gi|146410407|gb|ABQ38913.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. BTAi1]
          Length = 249

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 16/220 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           + VL++K D+ +G  + P  L+W ++P       FI    +     E+ G++ R P + G
Sbjct: 26  VEVLVAKSDINLGQSLKPEHLQWQSWPAATTSSSFIQRKDRSKGDAEVTGMIARAPFIAG 85

Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           +PIR +KLV   G+G ++++LP G RA + +IS  +  GG I PND VDV++  S  ER 
Sbjct: 86  EPIREQKLVKADGSGFMAAILPAGMRAVSTEISPETGAGGFILPNDRVDVLL--SKRERN 143

Query: 165 P---------TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSV 213
           P         +  ++LSNIRV+AID        +  +VG T TLEL P QA+ L  A+  
Sbjct: 144 PEQPNAGDVISSEIILSNIRVLAIDQAPKEKDGQTTVVGKTVTLELKPEQAETLARARQS 203

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253
             LSL LRSIAD+N   +E+    + +  G  + +I+ G+
Sbjct: 204 GTLSLALRSIADIN--VAENRSDENSRRRGDSVAVIRFGI 241


>gi|304392385|ref|ZP_07374326.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130]
 gi|303295489|gb|EFL89848.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130]
          Length = 286

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 133/236 (56%), Gaps = 13/236 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH---VQTEE--VITENPAKFINVLISKGDL 55
           MK  +L+ I V+ V +L AG + M +  P     VQT+    I   P +   VL++  D+
Sbjct: 14  MKPVQLVLIAVALVASLGAGYLVMNMSEPPAQVVVQTDNGPAIPTIPTRL--VLVAVADV 71

Query: 56  AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
             G  ++ N + +  +PE  V   F+     P A+++  G + R     G+PIR  K+V 
Sbjct: 72  PQGTTLSENNMRFEEWPETGVRPSFVTQKDAPEAIKDFSGAIARSSFFAGEPIRDAKIVR 131

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVT-VVLSN 173
             +G LS++LP GKRA  ++I+ SS+ GG I PNDHVDV+M R    E+   +T  +L N
Sbjct: 132 SDSGYLSAILPAGKRAVAIEITASSSAGGFILPNDHVDVIMARQQDGEQNVIITDTILQN 191

Query: 174 IRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK--LSLVLRSIAD 225
           IRV+A+D  I+ +E  +  VG T TLELT  Q + + AAQ + +  L+L LRS+ D
Sbjct: 192 IRVLALDQLIEEEEGKKSTVGETVTLELTAEQVEIVAAAQQINRRGLTLALRSVED 247


>gi|91977984|ref|YP_570643.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5]
 gi|91684440|gb|ABE40742.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5]
          Length = 266

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 117/202 (57%), Gaps = 16/202 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           + VL++K D+ +G  V P  ++W  +P       FI    +P A  +L G + R   + G
Sbjct: 44  VEVLVAKSDIPLGQPVGPGDMQWQTWPAATASANFIRRNERPEATTQLAGSIARSQFIAG 103

Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           +PIR +KLV   G+G ++++LP G RA + +IS  +  GG I PND VDV++  S  ++ 
Sbjct: 104 EPIREQKLVKANGSGFMAAILPTGMRAVSTEISPETGAGGFILPNDRVDVIL--SKRDKN 161

Query: 165 P----------TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQS 212
           P              +LSN+RV+AID  I+  + ++V+VG TATLEL P QA+ L  A+ 
Sbjct: 162 PDRAGSGGDVVNSETILSNVRVLAIDQAIEEKNGQKVVVGKTATLELKPEQAEFLARARQ 221

Query: 213 VAKLSLVLRSIADLN-PSSSED 233
              LSL LRS+ D N P+++E+
Sbjct: 222 SGTLSLALRSLVDANAPTATEE 243


>gi|27376551|ref|NP_768080.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349692|dbj|BAC46705.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 269

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/192 (37%), Positives = 108/192 (56%), Gaps = 11/192 (5%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           ++VL++K D+ +G  V P  ++W  +P       FI    +P  + ++ G + R P ++G
Sbjct: 46  VDVLVAKNDIGLGQTVKPEDVQWQTWPAATASATFIRRNERPEGVTQVTGSIARAPFIQG 105

Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           +PIR +KLV   G+G ++++LP G RA + +IS  +  GG I PND VDV++ R L    
Sbjct: 106 EPIRDQKLVKAEGSGFMAAILPTGMRAISTEISPETGAGGFILPNDRVDVLLTRRLKNPD 165

Query: 165 P--------TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVA 214
           P        T  ++L+NIRV+AID        +  +VG T TLEL P Q   L AA+   
Sbjct: 166 PSNGAPDIVTSEIILANIRVLAIDQAPKEKDGQNTVVGKTVTLELNPTQTATLSAARQSG 225

Query: 215 KLSLVLRSIADL 226
            LSL LRSI D+
Sbjct: 226 TLSLALRSIVDV 237


>gi|192292976|ref|YP_001993581.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
 gi|192286725|gb|ACF03106.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
          Length = 270

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 121/205 (59%), Gaps = 11/205 (5%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           ++VL++K ++A+G +VTP+ + W ++P ++  + F+     PN    L G + R P + G
Sbjct: 46  VDVLVAKSNIALGQLVTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAG 105

Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSER 163
           +PIR  KLV   G+G ++++LP G RA + +IS  ++ GG I PND VDV++  R  S  
Sbjct: 106 EPIREVKLVKPNGSGFMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSD 165

Query: 164 KP------TVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK 215
            P      T T +L+N+RV+AID      E   V+VG TATLELT  QA+ L  A+    
Sbjct: 166 IPGAKDTVTSTTILTNVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGT 225

Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQ 240
           LSL LRSIAD     +E SD  D Q
Sbjct: 226 LSLALRSIADAR-VVAEASDQGDKQ 249


>gi|39937141|ref|NP_949417.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris CGA009]
 gi|39650999|emb|CAE29522.1| possible pilus assembly protein cpaB [Rhodopseudomonas palustris
           CGA009]
          Length = 270

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 115/190 (60%), Gaps = 10/190 (5%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           ++VL++K ++A+G +VTP+ + W ++P ++  + F+     PN    L G + R P + G
Sbjct: 46  VDVLVAKSNIALGQLVTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAG 105

Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSER 163
           +PIR  KLV   G+G ++++LP G RA + +IS  ++ GG I PND VDV++  R  S  
Sbjct: 106 EPIREVKLVKPNGSGFMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSD 165

Query: 164 KP------TVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK 215
            P      T T +L+N+RV+AID      E   V+VG TATLELT  QA+ L  A+    
Sbjct: 166 IPGAKDTVTSTTILTNVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGT 225

Query: 216 LSLVLRSIAD 225
           LSL LRSIAD
Sbjct: 226 LSLALRSIAD 235


>gi|209886527|ref|YP_002290384.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
 gi|209874723|gb|ACI94519.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
          Length = 272

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 112/192 (58%), Gaps = 13/192 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL++K D+ +G  +    + W  +P       FI    + +A+ +L G + R P L G+
Sbjct: 44  DVLVAKADIPLGQTIKAEDMTWQTWPAATASSSFIRKSERASAVADLTGSIARSPFLAGE 103

Query: 107 PIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           PIR  KLV   G+G ++++LP G RA + +IS  +  GG I PND VDV++ R   +R P
Sbjct: 104 PIRETKLVKSNGSGFMAAILPSGMRAVSTEISPETGAGGFILPNDRVDVMLSR--RQRNP 161

Query: 166 --------TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAK 215
                   +  ++LS++RV+AID  I+  + ++V+VG TATLEL P QA+ L  ++    
Sbjct: 162 DSNGGEMVSSEIILSDVRVLAIDQTIEEKNGQKVVVGKTATLELKPAQAEMLTRSRQSGT 221

Query: 216 LSLVLRSIADLN 227
           L+L LRS+ D N
Sbjct: 222 LTLALRSLVDAN 233


>gi|218530653|ref|YP_002421469.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum
           CM4]
 gi|218522956|gb|ACK83541.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum
           CM4]
          Length = 261

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 14/234 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-----SPHHVQTEEVITENPAKFINVLISKGDL 55
           MK  RL    V G+ ALVAG  A  L+     +P  V   +     P     VL++  +L
Sbjct: 1   MKPARL---AVLGI-ALVAGCGAALLMQGEEKAPEAVPVAKAEPVAPVPMSEVLVAAAEL 56

Query: 56  AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
            +G  + P  L W+A+PE+ +  G I+    P  +++  G ++R      +PIR E+LV 
Sbjct: 57  PMGQTLKPEDLRWLAWPEQAISPGLIERRAAPKGLEDAVGAIIRTGFSANEPIRPERLVK 116

Query: 116 RGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
            G+G +S++LP G RA   T D   SS+ GG + PNDHVDV+   +    +   T +L++
Sbjct: 117 AGSGFMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKTSNEGTEQFAET-LLTD 175

Query: 174 IRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +RV+A+   +       V+   TATL LTP QA+ +  AQ V +LSLVLRSI D
Sbjct: 176 VRVLAVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD 229


>gi|163851902|ref|YP_001639945.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1]
 gi|254561620|ref|YP_003068715.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4]
 gi|163663507|gb|ABY30874.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1]
 gi|254268898|emb|CAX24859.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4]
          Length = 261

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 140/264 (53%), Gaps = 20/264 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS-------PHHVQTEEVITENPAKFINVLISKG 53
           MK  RL    V G+ ALVAG  A  L+        P  V   E +   P     VL++  
Sbjct: 1   MKPARL---AVLGI-ALVAGCGAALLMQGEEKAPEPAPVAKAEPVA--PVPMSEVLVAAA 54

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           +L +G  + P  L W+A+PE+ +  G I+    P  +++  G ++R      +PIR E+L
Sbjct: 55  ELPMGQTLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERL 114

Query: 114 VDRGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171
           V  G+G +S++LP G RA   T D   SS+ GG + PNDHVDV+   +    +     +L
Sbjct: 115 VKAGSGFMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKTSNEGTEQ-FAETLL 173

Query: 172 SNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           +++RV+A+   +       V+   TATL LTP QA+ +  AQ V +LSLVLRSI D +  
Sbjct: 174 TDVRVLAVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD-SAR 232

Query: 230 SSEDSDVWDVQEEGKEIQIIKAGV 253
           ++  S+  D+  EG  + +++ GV
Sbjct: 233 TAALSEEADMPPEGP-MTVVRFGV 255


>gi|240139025|ref|YP_002963500.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1]
 gi|240008997|gb|ACS40223.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1]
          Length = 261

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 140/264 (53%), Gaps = 20/264 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS-------PHHVQTEEVITENPAKFINVLISKG 53
           MK  RL    V G+ ALVAG  A  L+        P  V   E +   P     VL++  
Sbjct: 1   MKPARL---AVLGI-ALVAGCGAALLMQGEEKAPEPAPVAKAEPVV--PVPMSEVLVAAA 54

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           +L +G  + P  L W+A+PE+ +  G I+    P  +++  G ++R      +PIR E+L
Sbjct: 55  ELPMGQTLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERL 114

Query: 114 VDRGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171
           V  G+G +S++LP G RA   T D   SS+ GG + PNDHVDV+   +    +     +L
Sbjct: 115 VKAGSGFMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKTSNEGTEQ-FAETLL 173

Query: 172 SNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           +++RV+A+   +       V+   TATL LTP QA+ +  AQ V +LSLVLRSI D +  
Sbjct: 174 TDVRVLAVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD-SAR 232

Query: 230 SSEDSDVWDVQEEGKEIQIIKAGV 253
           ++  S+  D+  EG  + +++ GV
Sbjct: 233 TAALSEEADMPPEGP-MTVVRFGV 255


>gi|115526291|ref|YP_783202.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisA53]
 gi|115520238|gb|ABJ08222.1| putative pilus assembly protein cpaB [Rhodopseudomonas palustris
           BisA53]
          Length = 268

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 10/194 (5%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K ++VL++K +LA+G +V P+ ++W  +P ++    FI     PN    + G + R P +
Sbjct: 44  KTVDVLVAKTNLALGQLVGPSDVQWQNWPADSANSNFIRRDQHPNFDTTVAGSIARSPFV 103

Query: 104 KGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---- 158
            G+PIR  KLV   G+G ++++LP G RA + +IS  +  GG I PND VDV++ +    
Sbjct: 104 AGEPIREVKLVRPNGSGFMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKRERN 163

Query: 159 ---SLSERKPTVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSV 213
                S+   T   +L+N+RV+AID      E   V VG TATLEL P QA+ L  A+  
Sbjct: 164 SDSESSKENVTSVTILTNVRVLAIDQLPKEREGQNVAVGKTATLELLPEQAEQLARARQS 223

Query: 214 AKLSLVLRSIADLN 227
             LSL LRS+ D N
Sbjct: 224 GTLSLALRSMVDSN 237


>gi|254293213|ref|YP_003059236.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814]
 gi|254041744|gb|ACT58539.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814]
          Length = 321

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 112/194 (57%), Gaps = 12/194 (6%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           + VL++  DL VG  V    L W ++PEE+    F  +   P+A++ + G +VR  ++ G
Sbjct: 54  LKVLVATTDLKVGQFVKEGQLSWQSWPEESNTSSFFTEEMSPDAIEAMQGAVVRTNMMAG 113

Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           +P+  EK+V  G  G ++++L  G RA  ++IS  +A GG I PNDHVDV++   +   +
Sbjct: 114 EPLTSEKVVHPGEAGFMAAVLTPGMRAVAVEISAETAAGGFIFPNDHVDVLLTFEVDVER 173

Query: 165 PT-------VTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQSV 213
           PT       +  +L+N+RV+AID      E      +VG  ATLEL+   A  L+AAQ  
Sbjct: 174 PTGITEETAIDTILNNVRVLAIDGYYRPVEEEAGDAVVGHRATLELSKQDAMVLMAAQER 233

Query: 214 AKLSLVLRSIADLN 227
             LSLVLRSI++L+
Sbjct: 234 GDLSLVLRSISELS 247


>gi|300021853|ref|YP_003754464.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523674|gb|ADJ22143.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 267

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 143/263 (54%), Gaps = 16/263 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +L+G  V+   A +A  IA   ++P     + V  E       VL++  D++VG +
Sbjct: 1   MKRAQLVGFSVAFAAAALAYYIASAFMTP----PKTVTVEKQVDSTEVLVAATDISVGQI 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQ-PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           V      W  +P+  V   ++   +  P    E  G + R  IL G+P+  +KL+  G G
Sbjct: 57  VNEGNFHWATWPKSAVTADYVTKANSGPGKAHEFTGAVARSAILSGEPVTTQKLIKAGQG 116

Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVT-VVLSNI 174
           G L+++LP+G RA +  I   +A G +I PNDHVDV++   VRS S ++ TV   +  N+
Sbjct: 117 GVLAAILPQGMRAISTKIKAETAAGSLILPNDHVDVILIRHVRSRSGQEETVADTLFRNV 176

Query: 175 RVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           RV+AI   I++ +      +  STATLEL P QA+ +  A S+ +++L LRS+ADL+ S 
Sbjct: 177 RVMAIGQQIETKDGKKSADISASTATLELMPKQAEMMALANSMGEITLSLRSVADLS-SD 235

Query: 231 SEDSDVWDVQE-EGKEIQIIKAG 252
            E +   D+ + +   ++I++ G
Sbjct: 236 PERAGNLDLNKPQNNSVRIVRYG 258


>gi|254473714|ref|ZP_05087109.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062]
 gi|211957100|gb|EEA92305.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062]
          Length = 259

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +RL+ ++++     +A  + +   S    QT  V+ E     + +L++  DL VG  
Sbjct: 1   MKASRLLVLIIALSAGGLAAWLNLSSGSREPAQTI-VVQEQEIPSLEILVAAQDLKVGTA 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   L W  +PEE+V DG I     P A +E  G +++  +  G+PIR E+L++   G 
Sbjct: 60  LTEGDLSWAKWPEESVSDGVILRSSSPQADEEFLGQIIKAAMFSGEPIRAERLINTDKGF 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV--TVVLSNIRVIA 178
           L+++LPKGKRA  + +   S  GG I P D VDV++     +R        +L NI+V+A
Sbjct: 120 LAAILPKGKRAVAVPVDAVSTAGGFILPGDKVDVLISMQAKKRDEGFISETLLENIKVLA 179

Query: 179 IDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           ID      +S++ +    TATLEL P +A+ +  A  +  LSL LRS AD
Sbjct: 180 IDTTTASENSEKAMSPDQTATLELFPHEAETIARATQMGTLSLSLRSAAD 229


>gi|188581659|ref|YP_001925104.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001]
 gi|179345157|gb|ACB80569.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001]
          Length = 260

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 139/261 (53%), Gaps = 15/261 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV----SPHHVQTEEVITENPAKFINVLISKGDLA 56
           MK  RL    V G+ ALVAG  A  L+    +P      +     P     VL++  +L 
Sbjct: 1   MKPARL---AVLGI-ALVAGCGAALLMGGEKAPEPAPVVKAEPPPPIPMSEVLVAAAELP 56

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           +G  + P  L W+ +PE+ +  G ID    P  +++  G ++R      +PIR E+L+  
Sbjct: 57  MGQTLKPEDLRWIPWPEQAIAPGLIDRRAAPKGLEDAVGAIIRTGFSANEPIRPERLIKA 116

Query: 117 GNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174
           G+G +S++LP G RA   T D   SS+ GG I PNDHVD++   +    +     +L+++
Sbjct: 117 GSGFMSAILPPGMRAVAITTDTRGSSSAGGFILPNDHVDIIKTSNEGSDQ-FAETLLTDV 175

Query: 175 RVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           RV+A+   +   +   V+   TAT+ LTP QA+ +  AQ V +LSLVLRSI D +  ++ 
Sbjct: 176 RVLAVGQIVQDKNGANVVTAETATVALTPAQAETVTLAQKVGQLSLVLRSIQD-SARTAA 234

Query: 233 DSDVWDVQEEGKEIQIIKAGV 253
            S+  D+  EG  + +++ GV
Sbjct: 235 LSEEADLPPEGP-MTVVRFGV 254


>gi|227818614|ref|YP_002822585.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii
           NGR234]
 gi|36958870|gb|AAQ87295.1| Pilus assembly protein, CpaB [Sinorhizobium fredii NGR234]
 gi|227337613|gb|ACP21832.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii
           NGR234]
          Length = 263

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 15/223 (6%)

Query: 14  VFALVAG----IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +FAL +G     +A+       V+  EV  ++P++   VL++  +LA G  +    L W 
Sbjct: 8   LFALASGGAASWLALGFADQPTVEAAEV-QQSPSQ--EVLVAAQELARGTTLEEPHLRWQ 64

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
           A+ E  +   FI    +P+A + L G+L +   + G+PIR +KL  RG G LSS+LP GK
Sbjct: 65  AW-EGEIPPVFISRSARPDAKESLKGLLAQSSFVAGEPIREDKLAQRGAGFLSSMLPSGK 123

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVIAIDHNID 184
           RA  + ++  S  GG I PNDHVDV+        S  + K     VLSNIRV+A+D  I 
Sbjct: 124 RAIAVRVTAESTAGGFILPNDHVDVIHTVARPDSSGKDGKVVSRAVLSNIRVLAVDQTIS 183

Query: 185 --SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             +D   +VG TATLE  P Q   + AA++   +SL LR++AD
Sbjct: 184 EGADGTSVVGKTATLEADPGQIDIIAAAEASGTVSLALRAVAD 226


>gi|328545280|ref|YP_004305389.1| Flp pilus assembly CpaB [polymorphum gilvum SL003B-26A1]
 gi|326415022|gb|ADZ72085.1| Flp pilus assembly CpaB [Polymorphum gilvum SL003B-26A1]
          Length = 258

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 14/234 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV----SPHHVQTEEVITENPAKFINVLISKGDLA 56
           MK  RLM   + GV A+ AG++A R+V    +P   QT E + E   + + VL++  D+ 
Sbjct: 1   MKYARLM---ILGV-AMGAGLLAARMVMTTKAPEVPQTVERV-EPEKQTVAVLVATRDIR 55

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           +G  +  + + W  +PE  V  G I   +QP+A + + G + + PI  G+PIR ++L+  
Sbjct: 56  LGDHLAASDISWAEWPENVVPQGAITRQNQPDAEELMVGQIAKAPIYSGEPIRGQRLIRT 115

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--VVLSNI 174
             G ++++LPKGKRA  + +   +  GG I P D VDV++ RS    +       +L N+
Sbjct: 116 DRGFMAAILPKGKRAIAVGVEAETTAGGFILPGDKVDVILTRSSDSNRSNARSETILENV 175

Query: 175 RVIAIDHNI--DSDERVLV-GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           RV+AID     + DE+ L    TATLEL+  QA+ +  AQ +  +SL LRS  D
Sbjct: 176 RVLAIDTTTAGEQDEKSLSPDRTATLELSLEQAEVVAQAQQIGTISLALRSAQD 229


>gi|254502627|ref|ZP_05114778.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11]
 gi|222438698|gb|EEE45377.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11]
          Length = 256

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 140/261 (53%), Gaps = 22/261 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-----SPHHVQTEEVITENPAKFINVLISKGDL 55
           MK  R++ + +    A+ AG++A R+V     S        V  E       VL +  D+
Sbjct: 3   MKFARILVLAI----AVAAGVLAFRMVMMSGGSSDQASNAPVPLEQAKG--QVLTAATDI 56

Query: 56  AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
            +G  +T   + W  +PEE V  G +     P+A +EL G + + PI KG+PIR E+L++
Sbjct: 57  LLGAKLTAEDMVWTDWPEEAVPIGAVTKQVNPSASEELMGQIAKTPIFKGEPIRPERLIN 116

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
              G +S++LPKGKRA  + +   +  GG I P D VDV++ R   +   + T +L NIR
Sbjct: 117 TDKGFMSAILPKGKRAIAVSVEAETTAGGFILPGDKVDVILTRRTDDTAISET-ILENIR 175

Query: 176 VIAIDHNI--DSDERVLV-GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+AID     + D++ L    TATLELT  Q++ +  +Q V  ++L LRS  D    S++
Sbjct: 176 VLAIDTTTAGEQDQKNLSPQRTATLELTLGQSEVVAQSQQVGAIALALRSAQD----SAD 231

Query: 233 DSDVWDVQEEGKEIQIIKAGV 253
           D++  + +   + + ++K G+
Sbjct: 232 DAEPTETR---RGVNLVKYGI 249


>gi|323137424|ref|ZP_08072502.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242]
 gi|322397411|gb|EFX99934.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242]
          Length = 267

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 110/203 (54%), Gaps = 10/203 (4%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
           Q   V+   P     VL++  DL  G  +    + WV +P+ +V  G +     PNA +E
Sbjct: 31  QAPVVVAPPPMNTEQVLVATRDLTYGTEIVDQDMAWVEWPKTSVPVGSLTKTESPNAQEE 90

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           +    VR+PI  G+PIR ++L+     GL S++L  GKRA  +D+++++  GG I PND 
Sbjct: 91  VKSSYVRIPIAGGEPIRKDRLIKGVTAGLMSTMLSPGKRAIAIDVTLNNTAGGFILPNDR 150

Query: 152 VDVV-------MVRSLSERKPTVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPM 202
           VDV+         + L        VVLSN+RV+A+   I+    E V+ GSTATLEL P 
Sbjct: 151 VDVLRTYRDTEATKDLGHEVYNSEVVLSNVRVLAMGQTIEKKGAEPVVTGSTATLELDPR 210

Query: 203 QAKALVAAQSVAKLSLVLRSIAD 225
           QA+ +V AQ   +L L LR I D
Sbjct: 211 QAELVVLAQRTGQLVLSLRPITD 233


>gi|307943144|ref|ZP_07658489.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4]
 gi|307773940|gb|EFO33156.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4]
          Length = 256

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 124/233 (53%), Gaps = 14/233 (6%)

Query: 1   MKLTRL--MGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLA 56
           MK  RL  +G+ V       AG++A RLVS    + E V  +T    +   VL++  D+ 
Sbjct: 1   MKYARLAILGVAVG------AGLLAARLVSTSAPEPEPVAEVTAPTIEKTEVLVASSDIT 54

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           +G  +  +   W ++P E +  G +     P AM+ L G + R PI  G+PIR E+L+  
Sbjct: 55  LGSKLGGSDFTWASWPTEALPAGVLTKDDDPEAMERLVGQVTRTPIFSGEPIREERLIRT 114

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIR 175
             G ++++LPKG RA  + +   +  GG I P D VDV++ ++  E    V+  +L N+R
Sbjct: 115 DKGFMAAILPKGMRAIAVSVEAETTAGGFILPGDKVDVILTKASGETGSAVSNTILENVR 174

Query: 176 VIAIDHNI--DSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V+AID     D DE+ V    TATLEL   Q++ +  AQ V  +SL LRS  D
Sbjct: 175 VLAIDAVTAGDQDEKNVSPDRTATLELNLPQSEIISQAQQVGTISLALRSAQD 227


>gi|307304372|ref|ZP_07584123.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
 gi|307318079|ref|ZP_07597515.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|306896120|gb|EFN26870.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|306902574|gb|EFN33168.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
          Length = 263

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           + E P++   VL++  +L  G VV  N L W  + E  +   FI    +P+A   L G L
Sbjct: 35  VQETPSQ--EVLVAAAELKRGAVVEENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSL 91

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
                + G+PIR +KL   G G LSSLLP GKRA  + ++  S  GG I PNDHVDV+  
Sbjct: 92  ALSGFVAGEPIRDDKLAQGGTGYLSSLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHT 151

Query: 158 -----RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAA 210
                 S    K     +LSNIRV+A+D  +   SD   ++G TATLE+ P Q  A+ AA
Sbjct: 152 VARPDASGDAGKVVSRAILSNIRVLAVDQTVSQASDGASVIGKTATLEVDPEQISAVAAA 211

Query: 211 QSVAKLSLVLRSIADLNPSS 230
           ++   +SL LR+I D + +S
Sbjct: 212 EASGTVSLALRAITDNHEAS 231


>gi|16263309|ref|NP_436102.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|14523988|gb|AAK65514.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021]
          Length = 263

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           + E P++   VL++  +L  G V+  N L W  + E  +   FI    +P+A   L G L
Sbjct: 35  VQETPSQ--EVLVAAAELKRGAVIEENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSL 91

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
                + G+PIR +KL   G G LSSLLP GKRA  + ++  S  GG I PNDHVDV+  
Sbjct: 92  ALSGFVAGEPIRDDKLAQGGTGYLSSLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHT 151

Query: 158 -----RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAA 210
                 S    K     +LSNIRV+A+D  +   SD   ++G TATLE+ P Q  A+ AA
Sbjct: 152 VARPDASGDAGKVVSRAILSNIRVLAVDQTVSQASDGASVIGKTATLEVDPEQISAVAAA 211

Query: 211 QSVAKLSLVLRSIADLNPSS 230
           ++   +SL LR+I D + +S
Sbjct: 212 EASGTVSLALRAITDNHEAS 231


>gi|83859356|ref|ZP_00952877.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633]
 gi|83852803|gb|EAP90656.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633]
          Length = 268

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 4/213 (1%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           + + VL++  D++    V+     W  +P E V   FI    +P+AM EL G + R   +
Sbjct: 45  EVVQVLVAARDMSPSSRVSGADFRWTNWPVEAVIPAFITREARPDAMDELSGAVTRAAFV 104

Query: 104 KGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
            G+PI   KLV  G  G +++++  G RA  + IS  S  GG I PND VDV++  S  +
Sbjct: 105 DGEPILPGKLVQPGEAGFMAAVIDPGMRAVAVPISAESGAGGFILPNDRVDVLVTTSARD 164

Query: 163 RKPTVTVVLSNIRVIAIDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
                 V++ N+RV+AID   +D  E V++GSTATLELTP Q  ++    +   + L LR
Sbjct: 165 MGYISEVLVENVRVLAIDQTYVDDGEGVVLGSTATLELTPQQTSSVALGVAEGDIVLALR 224

Query: 222 SIADL--NPSSSEDSDVWDVQEEGKEIQIIKAG 252
           S+AD    P     +D    +  G+E++II+ G
Sbjct: 225 SVADREGGPRLPNGADDEAGERRGREVRIIRYG 257


>gi|154250688|ref|YP_001411512.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1]
 gi|154154638|gb|ABS61855.1| SAF domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 250

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 16/225 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E+ + E P     VL++  +L +G  +    L W  +P+ ++   +I     P A++E  
Sbjct: 35  EQKVVEAPT--TEVLVASSNLQLGQRIGGGDLRWQRWPDTSLNGAYITRNQSPAALEEYT 92

Query: 95  GVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           G + R  +L G+P+  EKLV   G G +S+L+  G RA  + I+  ++ GG I PND VD
Sbjct: 93  GSVARASLLSGEPVTSEKLVTLTGAGFMSALIEPGMRATAISITPETSAGGFILPNDRVD 152

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQ 211
           +V    L++ +     +L NIRV+AID   D  + E+V VG TATLELTP Q + +  A+
Sbjct: 153 IV---DLAKGQ----TILRNIRVLAIDQRFDEKAGEQVAVGRTATLELTPAQVEVVSVAE 205

Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
           +  ++ L LRS+A+ + + SE +    V E G  +++++ G   N
Sbjct: 206 AEGRIGLSLRSMAEQDLAGSEKT----VAEGGSVVKVVRYGTAQN 246


>gi|110632966|ref|YP_673174.1| putative CpaB2 pilus assembly protein [Mesorhizobium sp. BNC1]
 gi|110283950|gb|ABG62009.1| putative CpaB2 pilus assembly protein [Chelativorans sp. BNC1]
          Length = 267

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 10/222 (4%)

Query: 14  VFAL----VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +FAL    +A  +AM    P   Q    + +       VL++  DL  G V+  + L W 
Sbjct: 8   LFALGSGGIAAWLAMGTAEPTASQPAAAVEQEADPAREVLVAGADLVHGSVLDESHLRWQ 67

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
            +    V   FI    +P+A Q L G LVR   + G+PIR ++L   G G LS  LP GK
Sbjct: 68  PWTAGTVPAVFISRAAKPDAPQALKGSLVRGGFVAGEPIREDRLALPGAGFLSGQLPSGK 127

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNI-- 183
           RA  + ++  SA GG I PND VD++    LS +    + +   +LSNIRV+A+D N   
Sbjct: 128 RAIAVRVTAESAAGGFILPNDRVDLIHTSVLSGQSGGEQVSSRTILSNIRVLAVDQNASG 187

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +SD   +V  TATLE+ P Q   + AA++   +SL LR+ +D
Sbjct: 188 ESDGEAVVAKTATLEVEPDQIPIVTAAEASGTISLALRAASD 229


>gi|114799072|ref|YP_761692.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444]
 gi|114739246|gb|ABI77371.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444]
          Length = 281

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 18/200 (9%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           I VL +  DL +G  +    L+W  +PE  V +G   +   P A++EL G +V++PI K 
Sbjct: 51  IKVLTASRDLTIGEQIKAEDLQWSIWPELGVAEGQYTETAAPGAVEELTGAVVKMPIYKL 110

Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           +PI  +++V RG  G L  L+ +  RA ++ IS  SA GG I PND VD+++     E+ 
Sbjct: 111 EPIMPQRVVKRGEAGLLPVLMGEDMRAVSIGISPESASGGFILPNDRVDLILTY---EQT 167

Query: 165 PTVT-----------VVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALVAA 210
           P+ T            VL N+RV+AID      + +E   +G TATLE+ P +A+ +  +
Sbjct: 168 PSATNGLTSARTVSMTVLQNVRVLAIDQTYAPGEPEESTRIGQTATLEVLPSEAELVALS 227

Query: 211 QSVAKLSLVLRSIADLNPSS 230
           QS  +LSL LR + DL  SS
Sbjct: 228 QSKGQLSLALRPLNDLAVSS 247


>gi|118589702|ref|ZP_01547107.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614]
 gi|118437788|gb|EAV44424.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614]
          Length = 256

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 107/190 (56%), Gaps = 4/190 (2%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL+++ D+ +G  ++P+ + W  +PE+ V  G +     P A +E  G + R PI  G+
Sbjct: 47  QVLVAQRDIPLGAKLSPDDMSWANWPEDAVPFGAVTKEAAPLANEEYAGRIARAPIFAGE 106

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           P+R E+L++   G ++++LPKGKRA  + +   ++ GG I P D VDV++ R  S+    
Sbjct: 107 PVRPERLINTDKGFMAAILPKGKRAIAVSVEEETSAGGFILPGDKVDVILTRK-SDTSAV 165

Query: 167 VTVVLSNIRVIAIDHNIDSDER---VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
              +L NIRV+AID     ++    +    TATLEL+  Q++ +  +Q +  ++L LRS 
Sbjct: 166 SETILENIRVLAIDSTTAGEQEQKNLSPKRTATLELSLPQSEIIAQSQQIGTIALALRSA 225

Query: 224 ADLNPSSSED 233
            D    + +D
Sbjct: 226 QDSADDAEDD 235


>gi|296444396|ref|ZP_06886361.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b]
 gi|296258043|gb|EFH05105.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b]
          Length = 264

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 13/229 (5%)

Query: 9   IVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFIN-VLISKGDLAVGMVVTPNI 65
           I V GV A+VAG  A  ++S  P   Q   ++   P +  + VL++  DL  G  +    
Sbjct: 6   IAVLGV-AIVAGGGAFMMLSTEPTPPQPMHLVAPPPPRTTDQVLVAARDLPFGAALAEAD 64

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSL 124
             W+ +P   V  G +     P   ++++G  VR P+  G+PIR E+L+     GL S++
Sbjct: 65  TSWIEWPISAVPPGVLRKSEAPEIKKDIEGAFVRTPLANGEPIRRERLIKGQTPGLMSTM 124

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV------TVVLSNIRVIA 178
           +  G+RA  +D+S ++  GG I PNDHVDV+ +    ++   +       V+L N+RV+A
Sbjct: 125 ISAGRRAVAIDVSPNTTAGGFILPNDHVDVIRLYRDPDQGGQIGSDMNSEVILRNVRVLA 184

Query: 179 ID--HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +       + E  + G+TATL+L P QA+ ++ AQ   +L+L+LR IAD
Sbjct: 185 MGPVFQTKNGESSVTGATATLDLEPRQAELVILAQRSGQLALMLRPIAD 233


>gi|150377241|ref|YP_001313836.1| SAF domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150031788|gb|ABR63903.1| SAF domain protein [Sinorhizobium medicae WSM419]
          Length = 263

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 112/200 (56%), Gaps = 10/200 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           + E PA+   VL++  +L  G  +  N L W  + E  +   FI    + +A  EL G L
Sbjct: 35  VEEAPAQ--EVLVAAAELKRGAAIEENHLRWQPW-EGEIPPVFISRSSRADATTELKGSL 91

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-- 155
                + G+PIR +KL  RG G LSSLLP GKRA  + ++  S  GG I PNDHVDVV  
Sbjct: 92  ALSDFVAGEPIREDKLAQRGTGYLSSLLPSGKRAIAVRVTAESTAGGFILPNDHVDVVHT 151

Query: 156 MVR---SLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAA 210
            VR   +    K     +LSNIRV+A+D  +   +D   ++G TATLE+ P Q  A+ AA
Sbjct: 152 AVRPDAAGDAGKVVSRAILSNIRVLAVDQTVSQAADGTSVIGKTATLEVNPEQIAAVAAA 211

Query: 211 QSVAKLSLVLRSIADLNPSS 230
           ++   +SL LR+I+D + +S
Sbjct: 212 EASGTVSLALRAISDNHEAS 231


>gi|114568969|ref|YP_755649.1| Flp pilus assembly CpaB [Maricaulis maris MCS10]
 gi|114339431|gb|ABI64711.1| Flp pilus assembly CpaB [Maricaulis maris MCS10]
          Length = 278

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 110/190 (57%), Gaps = 11/190 (5%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           + +L ++ D+ +G  ++     W A+P+E +  G+I + ++   + +  G +VR PI +G
Sbjct: 44  VRILAARRDVEIGERISAADFYWQAWPDEALAPGYIVE-NRGQTIADFAGSVVRAPISQG 102

Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------- 157
           +PI   +LV  G+ G ++++L  G RA  + IS  +  GG I PND VDV++        
Sbjct: 103 EPITGRRLVQPGDAGFMAAVLTPGMRAVAVPISAETGAGGFILPNDRVDVIVSFEEETEG 162

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAK 215
           R  + R      ++ N RV+AID +  S  D+ V VG TATLELTP QA+A+  A +  +
Sbjct: 163 RRGAGRAFVARTIVENARVLAIDQSFSSEADDEVAVGETATLELTPDQARAVSVAVARGE 222

Query: 216 LSLVLRSIAD 225
           ++LVLRS+ D
Sbjct: 223 IALVLRSLTD 232


>gi|170750188|ref|YP_001756448.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM
           2831]
 gi|170656710|gb|ACB25765.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM
           2831]
          Length = 271

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 13/220 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL++  D+ +G V+    L W  +P+  V +G++     P A++E  G  VR   L G+
Sbjct: 46  DVLVAAIDMPMGQVLRAADLRWQPWPDGAVANGYMTRKINPKALEETVGASVRSGFLTGE 105

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATM--DISISSAVGGMIKPNDHVDVV-MVRSLSER 163
           PIR +KLV   +G ++++LP G RA  +  D   +++ GG I PND VDV+   R  S  
Sbjct: 106 PIRAQKLVRPESGFMAAILPPGMRAVAIVTDSRGTNSAGGFILPNDRVDVIRTFRDESNS 165

Query: 164 KPTVT------VVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK 215
           +   +       +L++IRV+AI   +       V+ G TATL +TP QA+ L  AQ V  
Sbjct: 166 RANNSDVQLSQTILTDIRVLAIGQLVQEKNGTNVVTGETATLAVTPAQAETLALAQKVGA 225

Query: 216 LSLVLRSIADLN--PSSSEDSDVWDVQEEGKEIQIIKAGV 253
           L+L LRS+AD    P ++  ++    Q     + +++ GV
Sbjct: 226 LTLSLRSLADAGRPPEATPLAEASAAQMPEPALTVVRFGV 265


>gi|326388865|ref|ZP_08210447.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206465|gb|EGD57300.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370]
          Length = 347

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 22/240 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS----PHHVQTEEVITENPAKFINVLISKGDLA 56
           M   +L+ +V + +FA+   + A  L++    P  +   +V+ + P     VL+++  L 
Sbjct: 1   MDRKKLILLVGALIFAIATSLAARALLTGGSTPQAIAAAKVL-DGP----KVLVAQRALP 55

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           VG ++T + + + A+P++ V D +   +     MQ+L G +VR PI  G PI    LV  
Sbjct: 56  VGTIITADAVSYQAWPKDLVQDAYF--LQDKTDMQKLLGTVVRNPITAGQPITTGSLVAP 113

Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-----SERKPTVTVV 170
           G+ G L++ L  G RA T+ +S  + V G + P DHVD+++ +S+     S+       +
Sbjct: 114 GDRGFLAAALGPGMRAVTIPVSTRTGVAGFVFPGDHVDLLLTQSVKGDGESQALKATETI 173

Query: 171 LSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           L N+RV+A D +     +D   RV   S  T+E TP  A+ L  A+S+  +SL LRSIAD
Sbjct: 174 LKNLRVLATDQSTDQETVDGHTRVKGFSLVTVEATPKIAEELAVAESIGTISLSLRSIAD 233


>gi|167648153|ref|YP_001685816.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31]
 gi|167350583|gb|ABZ73318.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31]
          Length = 296

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 44/292 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58
           M   R+M ++++ V A+   ++  +++S             P       VL++K DLA+G
Sbjct: 1   MNPLRVMIVLIAAVSAIGLAVVMQKMMSGKAPSAPIAQASAPVGKPMTQVLVAKRDLAIG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFI--------------------DDVHQP-----NAMQEL 93
             +T   + W  +P + +   FI                     DV +         + +
Sbjct: 61  QRLTAADVTWQPWPSDTINAAFITNGAADPVPAKATAKAAKAVGDVAEGMIGGVTPEKAV 120

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           +G +VR PIL G+PI   K+V  G GG LS +L  GKRA  + ++  +AVGG + P D V
Sbjct: 121 EGAIVRDPILAGEPITSRKIVRGGEGGYLSVVLSPGKRAMAVPVTSETAVGGFVLPGDRV 180

Query: 153 DVVMVR---------SLSERKPTVTVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTP 201
           DV+  R           S +      ++ N+RV+A+D     + D + +V +TATLE+ P
Sbjct: 181 DVIQTREAQSVGEGEGASGKHTIAETIVQNVRVLALDQATAAEKDAKTIVATTATLEVGP 240

Query: 202 MQAKALVAAQSVAKLSLVLRSIADL-NPSS----SEDSDVWDVQEEGKEIQI 248
           ++A+AL  A++   ++L LR+  DL  PS     S+++ V  +   G+   I
Sbjct: 241 IEAEALTRAKAAGPVTLTLRAYTDLGGPSGLAVRSQEASVVRINRGGETSNI 292


>gi|87199102|ref|YP_496359.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
 gi|87134783|gb|ABD25525.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
          Length = 342

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 126/236 (53%), Gaps = 14/236 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +LM +V + + A+     A  L + +     E   + P     VL+++  L VG +
Sbjct: 1   MDKRKLMLLVGALIVAIGTAFAARSLFAGNSTPQAEAAAKVPTG-PKVLVAQRALPVGTI 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + + + A+P++ V D +   V     MQ+L G +VR PI  G+P+    LV  G+ G
Sbjct: 60  ITADSINFQAWPKDMVQDAYF--VEGEADMQKLLGTVVRNPITAGEPVTKGNLVAPGDRG 117

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNI 174
            L++ L  G RA T+ +S  + V G + P DH+D+V+ +++      + +     +L N+
Sbjct: 118 FLAAALGAGMRAVTIPVSARTGVAGFVFPGDHIDLVLTQTVKGTGEGMALKASETILKNL 177

Query: 175 RVIAIDHNIDSDE-----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           RV+A D + + ++     RV   ST TLE+TP  A+ +  AQ++  +SL LRS+AD
Sbjct: 178 RVLATDQSTEQEQVEGKTRVRTFSTVTLEVTPKIAEKIAVAQTIGTISLSLRSLAD 233


>gi|85707703|ref|ZP_01038769.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1]
 gi|85689237|gb|EAQ29240.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1]
          Length = 365

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 12/189 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL++   L  G ++T + + +  +PEE V D +   +   + M +L G +VR P+  G+
Sbjct: 45  KVLVANRALPAGTIITADAMGYQMWPEELVQDAYF--IEGESDMSQLLGTVVRFPVTAGE 102

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERK 164
           P+    LV  G+ G L++ L  G RA T+ +S  + V G + P D VDVV+ +++S E +
Sbjct: 103 PVTQGSLVSPGDRGFLAAALGPGMRAVTVPVSAKTGVAGFVFPGDRVDVVLTQTVSGEGR 162

Query: 165 P--TVTVVLSNIRVIAIDH---NIDSDER---VLVGSTATLELTPMQAKALVAAQSVAKL 216
           P      VL N+RV+A D     + +DE    V    T TLE+TP  A+ +  AQ++ +L
Sbjct: 163 PLNAAETVLRNLRVLATDQTTEQVTNDEGKTVVRAFRTVTLEVTPQIAEKVAVAQTIGQL 222

Query: 217 SLVLRSIAD 225
           +LVLRSIAD
Sbjct: 223 TLVLRSIAD 231


>gi|16127176|ref|NP_421740.1| pilus assembly protein CpaB [Caulobacter crescentus CB15]
 gi|221235977|ref|YP_002518414.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000]
 gi|7208424|gb|AAF40191.1|AF229646_3 CpaB [Caulobacter crescentus CB15]
 gi|13424572|gb|AAK24908.1| pilus assembly protein CpaB [Caulobacter crescentus CB15]
 gi|220965150|gb|ACL96506.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 133/266 (50%), Gaps = 39/266 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVI-----TENPAK-FINVLISKGD 54
           M   RL+ ++++ V A+   ++  R +     +   ++        P K    VL++K D
Sbjct: 1   MSPVRLLIVLIAAVSAIGLAVVLQRALGGAPAKPTGLVEAPGGPAAPGKPMTQVLVAKRD 60

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAM 90
           L VG  +    + W A+P +++   FI +   P                        +  
Sbjct: 61  LPVGTRLVATDVGWQAWPSDSINAAFITNGSAPVTPDGKVEAAKAVVAATADQMIGGDPA 120

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149
           + ++G +VR PIL G+PI   K+V  G GG LS +L  GKRA ++ ++  +AVGG I P 
Sbjct: 121 KIVEGAIVRDPILIGEPITPRKIVRGGEGGYLSVVLTPGKRAMSVPVTSDTAVGGFILPG 180

Query: 150 DHVDVVMVR---SLSERKPTVTV---VLSNIRVIAIDHNI--DSDERVLVGSTATLELTP 201
           D VDV+  R   +  ++   V +   VL NIRV+A+D     + D + +V +TATLE+ P
Sbjct: 181 DRVDVLSTRDAPAAGDQGGKVMIAETVLQNIRVLALDQATAAEKDAKSIVAATATLEVGP 240

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLN 227
           ++A+AL  A++   ++L LR+  D+ 
Sbjct: 241 VEAEALARAKAGGPITLALRAYTDMG 266


>gi|220923695|ref|YP_002498997.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
 gi|219948302|gb|ACL58694.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
          Length = 264

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 22/221 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL+   +LA G  +T   + W  +PE  +   ++    +P A+ E  G  +R  +  G+
Sbjct: 43  DVLVVSTELAQGERLTKENMRWQPWPESALNSAYVTRSARPAALDEFAGSTLRSRMAPGE 102

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-----MVRSLS 161
           P++  KL     G L+++LP GKRA  + IS  +  GG I P+D VDV+       +   
Sbjct: 103 PVQDGKLAGLNAGFLATVLPSGKRAVAVRISAENTAGGFILPSDRVDVIHTFAPQAQGEG 162

Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDER--------VLVGSTATLELTPMQAKALVAAQSV 213
            R+     +L N+ V+AID  +D  ++        V++G TATLEL   QA+ L AA++ 
Sbjct: 163 AREHRSRTILKNVPVLAIDQTVDEAQKADKGKGKSVVIGKTATLELDSRQAEILAAAEAA 222

Query: 214 AKLSLVLRSIADLN--PSSSEDSDVWDVQEEGKEIQIIKAG 252
             LSL LRS AD N  P+++        +E  + +++I+ G
Sbjct: 223 GTLSLSLRSAADSNEVPTAA-------TEERIQTVRVIRGG 256


>gi|329890997|ref|ZP_08269340.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568]
 gi|328846298|gb|EGF95862.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568]
          Length = 310

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 9/154 (5%)

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISIS 139
           + +++ P A  +  G +VR PIL G+P+   K+V  G+ G +++ L  G RA  + +++ 
Sbjct: 119 VAELNTPGAKSDYIGAVVREPILAGEPLVARKIVRAGDSGYMAAYLEPGMRAMAIRVTVE 178

Query: 140 SAVGGMIKPNDHVDVVMVRSLSER------KPTVTVVLSNIRVIAIDHNIDS--DERVLV 191
           +A GG I P D VDV++ R +         K +   V+ N++V+AID +  +  DE+ +V
Sbjct: 179 TAAGGFILPGDRVDVLLTREVKGSGDDGGTKYSAATVMRNVKVLAIDQSTRAAEDEQAVV 238

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           G+TATLELT   A+ L  A+S  +LSLVLRS AD
Sbjct: 239 GATATLELTGRDAEVLALAKSEGELSLVLRSYAD 272


>gi|302381757|ref|YP_003817580.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192385|gb|ADK99956.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC
           15264]
          Length = 310

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 128/302 (42%), Gaps = 50/302 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSP--HHVQTEEVITENPAKFINVLISKGDLAVG 58
           MK  R+  I ++ V A+    +   + SP                    VL++  DLA G
Sbjct: 1   MKPARIAVICIAAVSAIGLAFVVRAMGSPSGEPTAVATAAPAPTRPMAKVLVAARDLAPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------------- 87
             +    LEW  +P + V   FI D   P                               
Sbjct: 61  QRLVEADLEWKDWPVDEVNPAFITDGSVPVPAAAAPEGEAAPATTDTTAESAVARVTRAA 120

Query: 88  ------NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISS 140
                  A  +  G +VR PIL G+PI   K+V  G+ G +++ L  G RA  + +S+ S
Sbjct: 121 NDLTTGGAKADYFGSVVREPILAGEPIVGRKIVRAGDSGYMAAYLEPGMRAMAIGVSVES 180

Query: 141 AVGGMIKPNDHVDVVMV--------RSLSERKPTVTVVLSNIRVIAIDHNIDS--DERVL 190
           A GG I P D VDV++               K    +V+ N++V+AID +  +  D++ +
Sbjct: 181 AAGGFILPGDRVDVIVTVEQQAGNDDDAGRAKFASRIVMQNVKVLAIDQSTRAGDDQQAV 240

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           VG+TATLE+ P  A+ +  A++   LSLVLRS AD +  S   S      E    I++ +
Sbjct: 241 VGATATLEVAPQDAEVVALAKAAGTLSLVLRSYADTSGPSGRVSMPPRASERSTAIRVFR 300

Query: 251 AG 252
            G
Sbjct: 301 GG 302


>gi|197106458|ref|YP_002131835.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
 gi|196479878|gb|ACG79406.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
          Length = 287

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 103/180 (57%), Gaps = 4/180 (2%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL++   L  G ++ P+ + W A+P +    G++       A  ++ G +VR  +  G 
Sbjct: 51  QVLVAAQALPPGTILKPSHVRWQAWPADAPTAGYLTSAASGPA--QIAGAVVRGELQPGQ 108

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           P+    +V  G+   L+++L  G RA T+++S +S V G I P D VD+V+ R + + + 
Sbjct: 109 PLTTTGVVQPGDRSFLAAVLKPGHRAVTVNVSAASGVAGFIFPGDRVDLVLSRRIGDDRH 168

Query: 166 TVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
               VL+++RV+ ID  + ++++ V+V  TATLE+TP QA+ +     + KLSL LRS+A
Sbjct: 169 VSETVLTDVRVVGIDQRVANEKQEVVVPQTATLEVTPKQAEIVALMPELGKLSLSLRSLA 228


>gi|304320646|ref|YP_003854289.1| CtpC protein [Parvularcula bermudensis HTCC2503]
 gi|303299548|gb|ADM09147.1| CtpC protein [Parvularcula bermudensis HTCC2503]
          Length = 253

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 4/186 (2%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+ S  D+  G +++  +++WV +P  NV + FI    Q + +  L     R+ I    P
Sbjct: 49  VMFSAKDIPQGAILSEGMVKWVKWPSANVPEFFITKDDQ-DFIDNLGLRRARLRIDANQP 107

Query: 108 IRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           I     V  G+ G L+S+L  G RA T  + +    GG I P D VD+       + +  
Sbjct: 108 IYGVNTVAHGDRGMLASILTPGMRAVTARMGLEETSGGFILPGDRVDIFATGIGDDGQME 167

Query: 167 VTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            + +L NIRV+AID   N+  ++  L GST T EL+P Q  + + A+   +L+LVLRS+ 
Sbjct: 168 TSAILRNIRVLAIDQVTNVTDEQTALNGSTVTFELSPAQVPSFIGARDNKQLTLVLRSVY 227

Query: 225 DLNPSS 230
           DL+P +
Sbjct: 228 DLSPET 233


>gi|296284551|ref|ZP_06862549.1| Flp pilus assembly protein CpaB [Citromicrobium bathyomarinum
           JL354]
          Length = 353

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 9/185 (4%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL+++  L VG ++T + + + A+P+E V D +  D      + +L G +VR  I  G+
Sbjct: 48  RVLVAQRSLPVGTIITQDAISYQAWPQELVRDAYFIDGEA--DVSKLLGTVVRYQITAGE 105

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           P+    LV  G+ G L++ L  G RA T+ ++  ++V G + P D VD++M       K 
Sbjct: 106 PVTQGALVAPGDRGFLAAALGPGMRAITVPVNAQTSVAGFVFPGDRVDLMMTHETEGVKA 165

Query: 166 TVTVVLSNIRVIAIDHNIDSD----ERVLVG-STATLELTPMQAKALVAAQSVAKLSLVL 220
           T T+ L N+RV+A D +   +    + V+ G ST TLE+TP  A+ +  AQ+V  LSL L
Sbjct: 166 TETI-LRNLRVLATDQSTSQNTVDGQTVVNGFSTVTLEVTPKIAEKIAVAQTVGTLSLSL 224

Query: 221 RSIAD 225
           RSIAD
Sbjct: 225 RSIAD 229


>gi|85373132|ref|YP_457194.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594]
 gi|84786215|gb|ABC62397.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594]
          Length = 371

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 19/229 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL+++  L VG ++T + L +  +PEE V D +   +   + + +L G +VR P+  G+
Sbjct: 46  KVLVAQRGLPVGTIITADALGFQMWPEELVQDAYF--IEGESDITQLLGTVVRHPVTAGE 103

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----S 161
           P+    LV  G+ G L++ L  G RA T+ +S ++ V G + P D VD+++ +++    +
Sbjct: 104 PLTQGTLVSPGDRGFLAAALGPGMRAITVPVSANTGVAGFVFPGDRVDLMLTQAVKGEET 163

Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDER------VLVGSTATLELTPMQAKALVAAQSVAK 215
           + K T T+ L N+RV+A D   +          V    T TLE+TP  A+ +  AQ++  
Sbjct: 164 DLKATETI-LRNLRVLATDQTTEQTTNEAGKTVVRAFRTVTLEVTPKIAEKVAVAQTLGT 222

Query: 216 LSLVLRSIADLNPS-----SSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259
           LSL LRSIAD         +S D  + D     +E +II+A +    DG
Sbjct: 223 LSLALRSIADNQAELERAIASGDVKIPDGASPEEEERIIQAAMNRPNDG 271


>gi|149186254|ref|ZP_01864568.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21]
 gi|148830285|gb|EDL48722.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21]
          Length = 361

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 11/188 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL+++  L  G ++T + + +  +PEE V D +  D      + +L G +VR P+  G+
Sbjct: 47  KVLVAQRALPTGTIITADAIGYQLWPEELVQDAYFLDGE--ADVSKLIGTVVRHPVTAGE 104

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           P+    LV  G+ G L++ L  G RA T+ +   S V G + P D VD+V+ +++S    
Sbjct: 105 PVTQGSLVSPGDRGFLAAALTPGMRAITVPVDAKSGVAGFVFPGDRVDMVLTQAVSGEGQ 164

Query: 166 TVT---VVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
            +     +L N+RV+A D +     +D   +V    T TLE+TP  A+ +  AQ++  LS
Sbjct: 165 ALKASETILRNLRVLATDQSTTQTTVDGKTQVRAFRTVTLEVTPTIAEKVAVAQTLGTLS 224

Query: 218 LVLRSIAD 225
           L LR +AD
Sbjct: 225 LALRPLAD 232


>gi|254418623|ref|ZP_05032347.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3]
 gi|196184800|gb|EDX79776.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3]
          Length = 305

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 14/180 (7%)

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145
           P A  +  G +VR PIL G+PI   K+V  G+ G L++ L  G RA  + +++ SA GG 
Sbjct: 118 PGAKSDYIGSVVREPILAGEPIVGRKIVRAGDSGYLAAYLEPGMRAMAIAVTVESAAGGF 177

Query: 146 IKPNDHVDVVMV-----------RSLSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVG 192
           I P D VDVV+               +  K +   V+ N++V+AID +  +  D + +VG
Sbjct: 178 ILPGDRVDVVLTVQNEGGGSAVEGGGATAKYSSATVMQNVKVLAIDQSTRAGDDAQAVVG 237

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252
           +TATLE+ P  A  L  A+S  +LSL LRS AD    S        V    + +++ + G
Sbjct: 238 ATATLEVRPQDAVLLAQAKSEGELSLSLRSYADTAGPSGATRAPRAVASASRSVRVYRGG 297


>gi|83749639|ref|ZP_00946622.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum
           UW551]
 gi|207728107|ref|YP_002256501.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
 gi|207744157|ref|YP_002260549.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
 gi|83723700|gb|EAP70895.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum
           UW551]
 gi|206591352|emb|CAQ56964.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
 gi|206595561|emb|CAQ62488.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
          Length = 284

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 130/244 (53%), Gaps = 28/244 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ +++    A +AG+ A+   S    Q      ++ +    V+++  D+ +G  
Sbjct: 1   MKNLRILSMLL---IATIAGLAAVVFASRWLSQ------QSSSGITKVVVAAADIDLGQR 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           ++P+ ++ V +P  ++  G I D H       LDG +VR  +++G+P+   KL  +G  G
Sbjct: 52  LSPDFIKTVDWPSASLPPGAISDTH------ALDGRVVRTSLIRGEPVLESKLTPQGTAG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--VRSLSERKPT---------VT 168
           GLS+++  GKRA T+ ++    V G   P  +VD+++  ++   + K T           
Sbjct: 106 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSISK 165

Query: 169 VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           +VL  I V+A+   ++ D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D +
Sbjct: 166 IVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDPH 225

Query: 228 PSSS 231
           P+ +
Sbjct: 226 PADT 229


>gi|300704929|ref|YP_003746532.1| pilus assembly (cpab), transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072593|emb|CBJ43943.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum CFBP2957]
          Length = 284

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 132/245 (53%), Gaps = 30/245 (12%)

Query: 1   MKLTRLMG-IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++  ++++ +  L A + A R +S    Q+   IT+       V+++  D+ +G 
Sbjct: 1   MKNLRILSMLLIATIAGLAAVVFASRWLSQ---QSNSGITK-------VVVAAADIDLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            ++P+ ++ V +P  ++  G I D H       LDG +VR  +++G+P+   KL  +G  
Sbjct: 51  RLSPDFIKTVDWPSASLPPGAISDTH------ALDGRVVRTSLIRGEPVLESKLTPQGTA 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--VRSLSERKPT---------V 167
           GGLS+++  GKRA T+ ++    V G   P  +VD+++  ++   + K T          
Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164

Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+   ++ D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D 
Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224

Query: 227 NPSSS 231
           +P+ +
Sbjct: 225 HPADT 229


>gi|221067359|ref|ZP_03543464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
 gi|220712382|gb|EED67750.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
          Length = 281

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 14/192 (7%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+++  D+ +G  + PN+L  V +P  ++ DG   D      MQ+L   +V+V +L+G+ 
Sbjct: 39  VVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGEA 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSL 160
           +   KL   G  GGL++++  GKRA T+ ++    V G   P ++VDVV+         +
Sbjct: 93  VLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQAGKM 152

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            + +     VL N+ V+A+    D DE +  V S  TLEL+P  A+ L  A+SV  LSLV
Sbjct: 153 EDSRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPGDAEKLDLARSVGNLSLV 212

Query: 220 LRSIADLNPSSS 231
           LR+  D +P+S+
Sbjct: 213 LRNQIDKDPTST 224


>gi|299532591|ref|ZP_07045980.1| pilus assembly transmembrane protein [Comamonas testosteroni S44]
 gi|298719394|gb|EFI60362.1| pilus assembly transmembrane protein [Comamonas testosteroni S44]
          Length = 281

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 14/192 (7%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+++  D+ +G  + PN+L  V +P  ++ DG   D      MQ+L   +V+V +L+G+ 
Sbjct: 39  VVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGEA 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------L 160
           +   KL   G  GGL++++  GKRA T+ ++    V G   P ++VDVV+          
Sbjct: 93  VLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGKT 152

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            E +     VL N+ V+A+    D DE +  V S  TLEL+P  A+ L  A+SV  LSLV
Sbjct: 153 EESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSLV 212

Query: 220 LRSIADLNPSSS 231
           LR+  D +P+S+
Sbjct: 213 LRNQIDKDPTST 224


>gi|264678239|ref|YP_003278146.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2]
 gi|262208752|gb|ACY32850.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2]
          Length = 281

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 14/192 (7%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+++  D+ +G  + PN+L  V +P  ++ DG   D      MQ+L   +V+V +L+G+ 
Sbjct: 39  VVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGEA 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------L 160
           +   KL   G  GGL++++  GKRA T+ ++    V G   P ++VDVV+          
Sbjct: 93  VLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGKT 152

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            E +     VL N+ V+A+    D DE +  V S  TLEL+P  A+ L  A+SV  LSLV
Sbjct: 153 EESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSLV 212

Query: 220 LRSIADLNPSSS 231
           LR+  D +P+S+
Sbjct: 213 LRNQIDKDPTST 224


>gi|315497466|ref|YP_004086270.1| flp pilus assembly protein cpab [Asticcacaulis excentricus CB 48]
 gi|315415478|gb|ADU12119.1| Flp pilus assembly protein CpaB [Asticcacaulis excentricus CB 48]
          Length = 304

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 45/240 (18%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD---------- 83
           +++V  E P   + VL++   L VG  +    L W A+PE+ + + +  D          
Sbjct: 38  SQKVAVEAPT--VKVLVAARHLKVGERIAEADLAWKAWPEDGITESYFTDKPVTPVAPAE 95

Query: 84  --VHQPNAMQE----------------------LDGVL---VRVPILKGDPIRLEKLVDR 116
               +  A++E                      +D VL   VR  +L  +PI   K+V  
Sbjct: 96  AKSAEDKALEEKVKNGAAQVADVADKTLNPTRGMDAVLGGVVREEMLANEPIVARKVVRA 155

Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLS 172
             GG ++ +L  G RA  + +++ S  GG I P D VD+V+   L     T  V   VL 
Sbjct: 156 DAGGFMAVMLAPGMRAMAVPVTVESTAGGFILPGDRVDIVVSTELQSNGQTTHVAKPVLR 215

Query: 173 NIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N++V+A+D  ++  SD+  ++G+TATLE+ P + +AL  A++   LSL+LRS AD+   S
Sbjct: 216 NVKVLAVDQTVEAKSDQPSVIGATATLEVRPEEGEALAQAKAQGPLSLMLRSYADVGGPS 275


>gi|82703478|ref|YP_413044.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196]
 gi|82411543|gb|ABB75652.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196]
          Length = 261

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 18/225 (8%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           IV+S +  L A ++A R +          I         V+++  D+ VG  +TP++L+ 
Sbjct: 2   IVISLLLGLAAVVVAGRWI----------IDRASVDAATVIVASRDIDVGTRLTPDMLQP 51

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPK 127
             +P   V +G   D         LD  +V+V +++G+P+   KL  +G  GGLS ++ +
Sbjct: 52  SDWPRATVPEGSFQDAKL------LDTRVVKVNLVRGEPLLEAKLAPQGAAGGLSGVIAE 105

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187
           GKRA T+ ++    + G   P ++VD+++       KP   +VL  I V+A+  ++  DE
Sbjct: 106 GKRAITVKVNEIVGLAGFALPGNNVDILVNAKDENDKPISKIVLERILVLAVGQDLGRDE 165

Query: 188 RVLVGSTA-TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
                 TA TLE+TP +A+ L  A+S+  LSLVLR+  D +P ++
Sbjct: 166 TKPKAVTAVTLEVTPQEAEKLDLARSIGTLSLVLRNQIDKSPGTT 210


>gi|295690799|ref|YP_003594492.1| Flp pilus assembly protein Cpab [Caulobacter segnis ATCC 21756]
 gi|295432702|gb|ADG11874.1| Flp pilus assembly protein CpaB [Caulobacter segnis ATCC 21756]
          Length = 293

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 108/219 (49%), Gaps = 33/219 (15%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP----------------- 87
              VL++K DLA+G  +T   ++W A+P ++V   FI +   P                 
Sbjct: 48  MTQVLVAKRDLAIGARLTQADIDWQAWPSDSVNAAFITNGAAPAEGETTSGAVALAKAAV 107

Query: 88  -------NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISIS 139
                  +  + LDG +VR PIL G+PI   K+V  G GG LS +L  GKRA  + +S  
Sbjct: 108 TGQMIGGDPAKALDGAIVRDPILAGEPITARKIVRGGEGGYLSVVLTPGKRAVAVPVSAD 167

Query: 140 SAVGGMIKPNDHVDVVMVR------SLSERKPTVTVVLSNIRVIAIDHNI--DSDERVLV 191
           +  GG I P D VDV+  R       +  R      VL N+RV+A+D     D D +  +
Sbjct: 168 TTAGGFILPGDRVDVLSTRDAPLPGGVGGRVIIGETVLRNVRVLALDQKTVADKDAKSQI 227

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            ++ATLE+   +A+AL AA++   ++L LR+  D    S
Sbjct: 228 ATSATLEVGAAEAEALAAAKAGGPVTLALRAYTDAGAPS 266


>gi|116626780|ref|YP_828936.1| SAF domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229942|gb|ABJ88651.1| SAF domain [Candidatus Solibacter usitatus Ellin6076]
          Length = 309

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 11/195 (5%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K + V+++  D+A+G ++  + L+ V +PE+++  G +        +Q  +  +V VP+ 
Sbjct: 35  KTLRVVVASRDMAIGTLLKKSDLKVVNYPEKDIPKGAV------FTLQGAENRVVMVPMN 88

Query: 104 KGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             +P+   KL D     G++S + KG RA ++ ++  + V G+I+P  HVDV+  R  S 
Sbjct: 89  TNEPVLQGKLSDTTTVEGVASTIEKGYRAVSVQVTDVTGVAGLIQPGSHVDVLFTRPGSM 148

Query: 163 RKPTVTVVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
            + T + +L N+RVI+   +I +    D R     T TL LTP +A+ L  A++  ++ L
Sbjct: 149 AEATTSTILQNVRVISTGRSITAGQVVDPRAPKSPTVTLVLTPDEAQKLELAKNQGRIGL 208

Query: 219 VLRSIADLNPSSSED 233
            LR+  DLN  +S +
Sbjct: 209 SLRNPLDLNRDASTE 223


>gi|78186672|ref|YP_374715.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
 gi|78166574|gb|ABB23672.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
          Length = 266

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 17/206 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF---IDDVHQPNAMQELDGVLVRVPIL 103
            V+I+   +  G  +  N L+ V +P   V +G     DDV          G + RV ++
Sbjct: 38  TVVIAARAIDAGTAIAENQLKAVQWPRSTVPEGASARTDDVA---------GRIARVSMI 88

Query: 104 KGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
            G+P+   KL     +GGLSS++P GKRA T+ ++   AV G   P  +VD+++    +E
Sbjct: 89  AGEPVLPGKLAPTNASGGLSSIIPDGKRAITVKVNEVIAVAGFALPGSYVDILVSGRDAE 148

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
           R+P    VLS I+V+A+     ++ ++  V +  TLELTP +++ L  A+S+  LSLVLR
Sbjct: 149 RQPFSRTVLSRIKVLAVAQETTAEPDKPKVVNAVTLELTPHESETLDLARSIGVLSLVLR 208

Query: 222 S---IADLNPSSSEDSDVWDVQEEGK 244
           +     ++N +    +D+   Q  G+
Sbjct: 209 NELDTGEINSAGVRLADIIQAQSAGR 234


>gi|325525577|gb|EGD03367.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49]
          Length = 277

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 21/231 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK++R + ++V    A++AG  A+   S   VQT        +    + ++  DL +G  
Sbjct: 1   MKISRAVMMLV---IAMIAGFAAVVFASRWLVQTST------SSVTPIAVAATDLNLGEP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + PN +  V++P  +V  G   D       +ELDG +VR  + +G+P+   KL   G  G
Sbjct: 52  LGPNQVHTVSWPTGSVPPGAFTD------PKELDGRVVRTSLARGEPVIESKLAPVGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIR 175
           GLS+++ +G RA T+ ++    V G   P ++VDV++     +  S+ +    +VL +I 
Sbjct: 106 GLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQAQQGKSDGQSISKIVLEHIL 165

Query: 176 VIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 166 VLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQID 216


>gi|253996770|ref|YP_003048834.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8]
 gi|253983449|gb|ACT48307.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8]
          Length = 298

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 128/237 (54%), Gaps = 23/237 (9%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
            + IVVS    L A ++A R +S      ++  T   +K   V+++  ++ +G  +TP +
Sbjct: 7   FLMIVVSVGIGLGAVVLASRWIS------QQAATVASSK---VVVAAINIDLGTPLTPQM 57

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSL 124
           L+   +P  +V  G  DD+      + LD  +V+  +L+G+P+   KL   G  GGLS++
Sbjct: 58  LKVADWPRGSVPVGATDDI------KTLDARVVKTSLLQGEPVLESKLAPLGATGGLSAV 111

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSNIRVIA 178
           + +G RA T+ ++    V G   P ++VD+V+      V++ +  K    +VL +I V+A
Sbjct: 112 IAEGNRAMTVRVNDVVGVAGFALPGNYVDIVVNTEDESVKAENVNKSISKIVLEHIMVLA 171

Query: 179 IDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +    + DE +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D N  ++E S
Sbjct: 172 VAQEQNRDETKPKVVNAVTLEVTPAQAEKLDLARSVGTLSLVLRNQIDKNVVTTEGS 228


>gi|148557762|ref|YP_001265344.1| SAF domain-containing protein [Sphingomonas wittichii RW1]
 gi|148502952|gb|ABQ71206.1| SAF domain [Sphingomonas wittichii RW1]
          Length = 332

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 14/183 (7%)

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
           L VG ++ P    +  +P E V   +   +   + +  L+G +VR  I  G P+    LV
Sbjct: 55  LPVGTIIGPESFRYQRWPAELVSKTYF--IKGESDLAALNGSVVRYAITAGAPVTQGALV 112

Query: 115 DRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---SERKP--TVT 168
             G+ G L++ L  G RA T+ +S  S V G + P D VD+++ + +    +  P     
Sbjct: 113 KPGDRGFLAAALGPGMRAVTISVSAQSGVAGFVFPGDRVDLMLTQEVPGGGDGPPLKAAE 172

Query: 169 VVLSNIRVIAIDH----NIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAKLSLVLRS 222
            ++ NIRV+A D      +D + + +V +T+  TLE TP  A+ +  AQ++ +LSL LRS
Sbjct: 173 TIIRNIRVLAADQRTDKTVDEEGKTVVANTSNVTLEATPKIAEKIAVAQTIGQLSLALRS 232

Query: 223 IAD 225
           IAD
Sbjct: 233 IAD 235


>gi|107028249|ref|YP_625344.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116687160|ref|YP_840407.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
 gi|105897413|gb|ABF80371.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116652875|gb|ABK13514.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
          Length = 279

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 18/218 (8%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           V A+VAG+ A+   S   VQT      + +   +V ++  DL +G  + PN +  V++P 
Sbjct: 11  VVAMVAGLAAVVFASRWLVQT------STSSVTSVAVATTDLNLGEPLGPNQIHMVSWPA 64

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
            +V  G   D       + L+G +VR  + +G+P+   KL   G  GGLS+++  G RA 
Sbjct: 65  GSVPTGAFTDT------KTLEGRVVRTSLARGEPVIESKLAPVGTKGGLSAVIADGSRAI 118

Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188
           T+ ++    V G   P ++VDV++     +  ++ +    +VL +I V+A+   +  D+ 
Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178

Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
              V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216


>gi|170734869|ref|YP_001773983.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
 gi|169820907|gb|ACA95488.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
          Length = 279

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 18/218 (8%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           V A+VAG+ A+   S   VQT        +   +V ++  DL +G  + PN +  V++P 
Sbjct: 11  VVAMVAGLAAVVFASRWLVQTST------SSVTSVAVASTDLNLGEPLGPNQIHMVSWPA 64

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
            +V  G   D       + L+G +VR  + +G+P+   KL   G  GGLS+++  G RA 
Sbjct: 65  GSVPTGAFTDT------KALEGRVVRTSLARGEPVIESKLAPVGTKGGLSAVIADGSRAI 118

Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188
           T+ ++    V G   P ++VDV++     +  ++ +    +VL +I V+A+   +  D+ 
Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178

Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
              V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216


>gi|332188388|ref|ZP_08390113.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17]
 gi|332011617|gb|EGI53697.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17]
          Length = 329

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 19/219 (8%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
           ++   P     VL++   L VG ++    L++  +P+E V   +   +     + +L G 
Sbjct: 40  IVAPPPETGPEVLVATRALPVGTIIDATALKFQPWPKEMVGGAYY--LKGQADLAKLQGT 97

Query: 97  LVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           +VR  I  G P+    +V  G+ G L++ L  G RA T+ +S  + V G + P D +D+V
Sbjct: 98  VVRYAITAGQPLTQGAVVQPGDRGFLAAALTPGMRAVTVPVSAQTGVAGFVFPGDRIDMV 157

Query: 156 MVRSLSERK--PTVTV---VLSNIRVIAIDHNIDSDE------RVLVGSTATLELTPMQA 204
           + + ++     P + V   +L N+RV+A D   DS         +   +T T+E TP  A
Sbjct: 158 LTQDVAGGGDGPPLKVSETILRNVRVLATDQRTDSQSGEDGKTPIQTFTTVTVEATPKMA 217

Query: 205 KALVAAQSVAKLSLVLRSIADL-----NPSSSEDSDVWD 238
           + L  AQ+V  LSL LR++AD      NP++     V D
Sbjct: 218 EQLAVAQTVGTLSLSLRALADRPDDLQNPAAVNAGPVAD 256


>gi|322419945|ref|YP_004199168.1| Flp pilus assembly protein CpaB [Geobacter sp. M18]
 gi|320126332|gb|ADW13892.1| Flp pilus assembly protein CpaB [Geobacter sp. M18]
          Length = 308

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 117/217 (53%), Gaps = 14/217 (6%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89
           H +Q E  +T+   +   ++++  D+ +G  ++   L+  ++P++++  G   DV     
Sbjct: 27  HFLQKEMDMTKA-VQPQTLVVAAADIPIGGTISEPQLKTTSWPKDSIPPGSAADV----- 80

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGM 145
            + L G +   PI  GD +  +KL  +    G+G ++ ++P G RA T+ ++  + V G 
Sbjct: 81  -KSLVGRVAIRPISNGDAVTEQKLKPKAGAAGSGFMTYIVPLGHRATTVAVNEVAGVAGF 139

Query: 146 IKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPM 202
           I PND +DVV+   L  S+++    ++L N+ V+A     +  E + +V  T TL+LTP 
Sbjct: 140 ITPNDRIDVVLTTQLPGSQKENISKIILQNVPVLATGQITEQKEGKPVVVPTVTLDLTPE 199

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
            A+ LV A S   L L+LR+IAD  P +++ + +  V
Sbjct: 200 DAEKLVLAGSKGSLQLLLRNIADSAPLNAKGATIAKV 236


>gi|187919323|ref|YP_001888354.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
 gi|187717761|gb|ACD18984.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
          Length = 269

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 21/221 (9%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           + A +AG+ A+   S        +++++      V+++  D+ +G  + P+ L+   +P 
Sbjct: 3   LIATLAGLTAVVFAS------RWMVSQSSNATTRVVVAAADINLGQRIGPDYLKLTDWPS 56

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
            +V  G   D+      Q+LDG +++  +L+G+PI   KL   G  GGLS+++ +GKRA 
Sbjct: 57  NSVPPGSYSDI------QKLDGRVLKESLLRGEPILDAKLTPVGTLGGLSAVIGEGKRAI 110

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-------VVLSNIRVIAIDHNIDS 185
           T+ ++    V G   P ++VD+++      R P  T       +VL  I V+A+   +  
Sbjct: 111 TVRVNDVIGVAGFALPGNYVDIIVNTQKDGRDPGATRDQNISKIVLEKILVLAVAQEVGR 170

Query: 186 DE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           DE +  V    TLE+ P QA+ +  A+S+  LSLVLR+  D
Sbjct: 171 DETKPKVVDAVTLEVLPEQAEKIDLARSIGTLSLVLRNQID 211


>gi|103486618|ref|YP_616179.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256]
 gi|98976695|gb|ABF52846.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256]
          Length = 345

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 21/195 (10%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           +L++   L VG +V P+   +  +P++ V + +   V +   +  L G +VR PI  G P
Sbjct: 48  ILVATRQLPVGTIVGPDSFRFQPWPKDLVENAYF--VKEKTDVNTLVGTVVRHPITAGQP 105

Query: 108 IRLEKLV---DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---- 160
           +    LV   DRG   L++ L  G RA T+ +S    V G + P D VDVV+ +++    
Sbjct: 106 LTQGALVHPNDRGF--LAAALGPGMRAITVKVSQEQGVAGFVFPGDRVDVVLTQTIEVEE 163

Query: 161 SERKP-----TVTVVLSNIRVIAIDHNIDSDER-----VLVGSTATLELTPMQAKALVAA 210
               P     T   ++ NIRV+A D   D+++      V    + TLE TP  A+ +  A
Sbjct: 164 GSTYPDDQIFTAETIVRNIRVLATDQRYDAEDETGKTPVRTFGSVTLEATPEIAEKIAVA 223

Query: 211 QSVAKLSLVLRSIAD 225
           Q + +LSL LR +A+
Sbjct: 224 QGMGRLSLALRPLAE 238


>gi|91788410|ref|YP_549362.1| Flp pilus assembly CpaB [Polaromonas sp. JS666]
 gi|91697635|gb|ABE44464.1| Flp pilus assembly CpaB [Polaromonas sp. JS666]
          Length = 284

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 28/243 (11%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M+ TR L+ I V+ V A  A I+A R +S           +  A    V ++  D+++G 
Sbjct: 1   MRNTRALVMIAVAVVLAFGAVIVAARWIS----------AQASADTSKVAVAAVDISLGA 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118
            ++P ++  V +P   +  G I D  Q      L+  + R  I +G+P+   KL   G  
Sbjct: 51  RLSPEMVRMVDWPASAMPPGAITDAKQ------LETRVTRTSIQRGEPVMEGKLAPPGTQ 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-------RKPTVT-VV 170
           GGLS+++ +GKRA T+ ++    V G   P + VD+ +V +  E       +  T++ +V
Sbjct: 105 GGLSAVVAEGKRAMTVRVNDVVGVAGFALPGNFVDI-LVNTQDEPGKGGAGKDQTISKIV 163

Query: 171 LSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           L  I V+AI      DE +  V +  TLELTP QA+ L  A+SV  LSLVLR+  D NP 
Sbjct: 164 LERILVLAIAQESSRDETKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPV 223

Query: 230 SSE 232
           +++
Sbjct: 224 NTK 226


>gi|288956968|ref|YP_003447309.1| pilus assembly protein [Azospirillum sp. B510]
 gi|288909276|dbj|BAI70765.1| pilus assembly protein [Azospirillum sp. B510]
          Length = 288

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 13/189 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            + ++  DL  G  + P  + W AFPE  +    +  V   + +  L G +VR  +  G+
Sbjct: 42  RIAVAAADLPAGSFLQPMSVRWEAFPENALRPETL--VEGKDNIDSLVGAVVRDAVKAGE 99

Query: 107 PIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--- 162
            I  ++L+  R  G L+++L  G RAA++ ++  S   G+I P DHVD+++ +  ++   
Sbjct: 100 IISRDRLLSPRERGFLAAVLAPGMRAASVAVNEVSGTAGLIFPGDHVDLLLTQEANDEGA 159

Query: 163 -RKPTVTVVLSNIRVIAIDHNID------SDERVLVGSTATLELTPMQAKALVAAQSVAK 215
            R+     +L N+RV+A+D   D        +   V  T TLE+T  QA+ +  A ++ K
Sbjct: 160 ARRLATETILDNLRVLAVDQRTDFPKGEEPGQTARVARTVTLEVTAKQAQVISVAANLGK 219

Query: 216 LSLVLRSIA 224
           L+L LRS+A
Sbjct: 220 LTLSLRSLA 228


>gi|307294423|ref|ZP_07574267.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
 gi|306880574|gb|EFN11791.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
          Length = 307

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 13/213 (6%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
            ++  ++ + E   +       V+++   L  G  VT   +  V +P  +V  G   D  
Sbjct: 22  FIANSYLSSAEKAPQADGGMAKVVVATVSLPFGSAVTAEKIRTVDWPANSVPPGAFRDPI 81

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG---LSSLLPKGKRAATMDISISSAV 142
           Q  ++ +  G +V   I  G+PI   KL   G GG   +S++L    RA  + +S  +A 
Sbjct: 82  QLTSLGK--GRVVLRQIEPGEPILASKL--SGEGGRATMSAVLAPEMRAVAVRVSDVAAA 137

Query: 143 GGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNI-DSDERVLVGSTATL 197
           GG + P D VDV + R+L++     +    V+L   RVIAID N  D+ +   VG TATL
Sbjct: 138 GGFVLPGDTVDVFVTRTLTDPVAGSQQITDVLLQGTRVIAIDQNANDTSKDPAVGKTATL 197

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADL-NPS 229
           E+  + A+ LV AQ V +L+LVLR++ D  NP+
Sbjct: 198 EVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPA 230


>gi|300692330|ref|YP_003753325.1| pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299079390|emb|CBJ52061.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum PSI07]
          Length = 284

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 19/202 (9%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
           ++ ++ +    V ++  D+ +G  ++P +++ V +P  ++  G + D H       LDG 
Sbjct: 28  LMQQSASGITKVAVASADVELGQRLSPEMVKLVDWPAASLPPGVVTDAH------ALDGR 81

Query: 97  LVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           +V+  + +G+P+   KL   G  GGLS+++  GKRA T+ ++    V G   P  +VDV+
Sbjct: 82  VVKASLTRGEPVLESKLTPVGTAGGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDVI 141

Query: 156 MVRSLSERKPTVT-----------VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQ 203
           +     E++               +VL  I V+A+   +  D+ +  V +  TLE+TP Q
Sbjct: 142 VNTMEDEKQAKAAGNDQKEHSISKIVLEKILVLAVAQEVGRDDTKPKVVNAVTLEVTPDQ 201

Query: 204 AKALVAAQSVAKLSLVLRSIAD 225
           A+ L  A+SV  LSLVLR+ AD
Sbjct: 202 AEKLDLARSVGTLSLVLRNQAD 223


>gi|134291858|ref|YP_001115627.1| SAF domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134135047|gb|ABO59372.1| SAF domain protein [Burkholderia vietnamiensis G4]
          Length = 281

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 18/218 (8%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           V A+VAG+ A+   S   + T            +V ++  DL +G  + PN +  V++P 
Sbjct: 11  VVAMVAGLAAVVFASRWLMNTSN------GSVTSVAVATTDLNLGEPLGPNQIHMVSWPA 64

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
            +V  G   D       +EL+G +VR  + +G+P+   KL   G  GGLS+++  G RA 
Sbjct: 65  GSVPTGAFTDT------KELEGRVVRTSLARGEPVIESKLAPVGTKGGLSAVIADGSRAI 118

Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188
           T+ ++    V G   P ++VDV++     +  ++ +    +VL +I V+A+   +  D+ 
Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178

Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
              V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216


>gi|78060315|ref|YP_366890.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
 gi|77964865|gb|ABB06246.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
          Length = 279

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 18/218 (8%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           V A+VAG+ A+   S   VQT      + +    V ++  DL +G  + PN +  V++P 
Sbjct: 11  VVAMVAGLAAVVFASHWLVQT------STSSVTPVAVATTDLNLGEPLGPNQIHMVSWPS 64

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
            +V  G   D       + L+G +VR  + +G+P+   KL   G  GGLS+++  G RA 
Sbjct: 65  GSVPTGAFTDT------KGLEGRVVRTSLSRGEPVIESKLAPVGTKGGLSAVIADGSRAI 118

Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188
           T+ ++    V G   P ++VDV++     +  ++ +    +VL +I V+A+   +  D+ 
Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178

Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
              V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216


>gi|167584956|ref|ZP_02377344.1| Flp pilus assembly CpaB [Burkholderia ubonensis Bu]
          Length = 280

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 29/235 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK TR + +++    A+VAG+ A+   S   VQT        +    V ++  DL +G  
Sbjct: 1   MKNTRAITMLI---IAMVAGLAAVAFASRWLVQTST------SAVTQVAVATTDLNLGEP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P  +  +++P  +V  G   D       + L+G +VR  + +G+P+   KL   G  G
Sbjct: 52  IGPAQIRTISWPTGSVPPGAFTDT------KSLEGRVVRTSLARGEPVLEAKLAPLGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------VVL 171
           GLS+++  G RA T+ ++    V G   P ++VDV++    + ++P  T        +VL
Sbjct: 106 GLSAVIGAGNRAITVRVNDVVGVAGFALPGNYVDVIV----NTQEPGKTDNQQSISKIVL 161

Query: 172 SNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
            +I V+A+   +  D+ +  V +  TLE++P QA+ L  A+SV  LSLVLR+  D
Sbjct: 162 EHILVLAVAQQVSRDDTQPKVVNAVTLEVSPEQAEKLDVARSVGTLSLVLRNQVD 216


>gi|296156488|ref|ZP_06839326.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
 gi|295893087|gb|EFG72867.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
          Length = 269

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 21/221 (9%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           + A +AG+ A+   S        +++++      V+++  D+ +G  + P+ L+   +P 
Sbjct: 3   LIATLAGLTAVVFAS------RWMVSQSSNATTKVVVAATDINLGQRIGPDFLKLTEWPS 56

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
            +V  G   D+      Q+LDG +++  +L G+P+   KL   G  GGLS+++ +GKRA 
Sbjct: 57  NSVPPGSFTDI------QKLDGRVLKESLLHGEPVLEAKLTPVGTLGGLSAVIGEGKRAI 110

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-------TVVLSNIRVIAIDHNIDS 185
           T+ ++    V G   P ++VD+++      R P          +VL  I V+A+   +  
Sbjct: 111 TVRVNDVIGVAGFALPGNYVDIIVNTQKDARDPGTQRDQNISKIVLEKILVLAVAQEVGR 170

Query: 186 DE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           DE +  V    TLE++P QA+ +  A+S+  LSLVLR+  D
Sbjct: 171 DETKPKVVDAVTLEVSPEQAEKIDLARSIGTLSLVLRNQID 211


>gi|170692565|ref|ZP_02883727.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
 gi|170142221|gb|EDT10387.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
          Length = 278

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 23/233 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R   IV+ G  AL+AG+ A+   S   +QT        +    V ++  ++++G  
Sbjct: 1   MKTSR--AIVMLG-MALLAGLAAVGFASRWLLQTSS------SALTPVAVATAEVSLGQP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +   ++  V +P  +V  G   D   P A   LDG +VR  +  G+P+   KL  +G  G
Sbjct: 52  LNSTMIRTVNWPTASVPPGAFKD---PKA---LDGRVVRASLEPGEPVIESKLAPQGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSN 173
           GLS+++ +GKRA T+ ++    V G   P ++VDV++       ++   ++    +VL  
Sbjct: 106 GLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAKTADPQQSISKIVLEK 165

Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 166 ILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLVLRNQID 218


>gi|197295152|ref|YP_002153693.1| putative flp type pilus assembly protein [Burkholderia cenocepacia
           J2315]
 gi|195944631|emb|CAR57235.1| putative flp type pilus assembly protein [Burkholderia cenocepacia
           J2315]
          Length = 279

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 18/218 (8%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           V A++AG+ A+   S   +QT      +     +V ++  DL +G  + PN +  V++P 
Sbjct: 11  VVAMIAGLAAVVFASHWLMQT------STNSVTSVAVATTDLNLGEPLGPNQIHMVSWPS 64

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
            +V  G   D       + L+G +VR  + +G+P+   KL   G  GGLS+++  G RA 
Sbjct: 65  GSVPTGAFTDT------KALEGRVVRTSLSRGEPVIESKLAPVGTKGGLSAVIADGSRAI 118

Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188
           T+ ++    V G   P ++VDV++     +  ++ +    +VL +I V+A+   +  D+ 
Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178

Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
              V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216


>gi|241662166|ref|YP_002980526.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
 gi|309780761|ref|ZP_07675502.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
 gi|240864193|gb|ACS61854.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
 gi|308920443|gb|EFP66099.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
          Length = 283

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 18/193 (9%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              + ++  D+ +G  ++P  ++ V +P  ++  G I+D H       LDG +VR  + +
Sbjct: 36  ITKIAVAATDIDLGQRLSPEAIKLVDWPASSLPPGAINDPH------ALDGRVVRASLTR 89

Query: 105 GDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           G+P+   KL   G  GGLS+++ +GKRA T+ ++    V G   P  +VD+++      R
Sbjct: 90  GEPVLDSKLTPVGTAGGLSAVIAEGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQDSR 149

Query: 164 --KPTV--------TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQS 212
             KP           +VL  I V+A+   ++ D+ +  V +  TLE+TP QA+ +  A+S
Sbjct: 150 EAKPGADRNDQSISKIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPEQAEKIDLARS 209

Query: 213 VAKLSLVLRSIAD 225
           V  LSLVLR+  D
Sbjct: 210 VGNLSLVLRNQVD 222


>gi|254255253|ref|ZP_04948569.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
 gi|124900990|gb|EAY71740.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
          Length = 323

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 18/218 (8%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           V A+VAG+ A+   S   VQT      + +   +V ++  DL +G  +  N +  V++P 
Sbjct: 53  VVAMVAGLAAVVFASHWLVQT------STSAVTSVAVAATDLNLGEPLGANQIHMVSWPS 106

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
            +V  G   D       + L+G +VR  + +G+P+   KL   G  GGLS+++ +G RA 
Sbjct: 107 GSVPTGAFTDT------KALEGRVVRTSLARGEPVIESKLAPIGTKGGLSAVIAEGSRAI 160

Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188
           T+ ++    V G   P ++VDV++     +  ++ +    +VL +I V+A+   +  D+ 
Sbjct: 161 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 220

Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
              V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 221 APKVVNAVTLEVTPEQAERLDLARSVGTLSLVLRNQID 258


>gi|294012240|ref|YP_003545700.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
 gi|292675570|dbj|BAI97088.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
          Length = 295

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 14/218 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +A   V+  ++   E +         V+++   L  G  VT   +  V +P  +V  G  
Sbjct: 4   LAAVFVANSYLSRAEKVPPPEGGMAKVVVATVSLPFGSAVTAEKIRVVDWPANSVPPGAF 63

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG---LSSLLPKGKRAATMDISI 138
            D  Q  ++ +  G +V   I  G+PI   KL   G GG   +S++L    RA  + +S 
Sbjct: 64  RDPIQLTSLGK--GRVVLRQIEPGEPILASKL--SGEGGRATMSAVLAPEMRAVAVRVSD 119

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIAIDHNI-DSDERVLVG 192
            +A GG + P D VDV + R+L +      +    V+L   RVIAID N  D+ +   VG
Sbjct: 120 VAAAGGFVLPGDTVDVFVTRTLQDPMGGASQQITDVLLQGTRVIAIDQNANDTSKDPAVG 179

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADL-NPS 229
            TATLE+  + A+ LV AQ V +L+LVLR++ D  NP+
Sbjct: 180 KTATLEVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPA 217


>gi|299067806|emb|CBJ39017.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum CMR15]
          Length = 295

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 31/244 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ +++    A +AG+ AM   S   +Q      +  +    V ++  D+ +G  
Sbjct: 8   MKNLRILSMLL---IATIAGLAAMLFASRWLIQ------QGNSGTTKVAVAAVDVNLGQR 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           ++P  +  V +P  ++  G I D H       +DG + R  +  G+P+   KL   G  G
Sbjct: 59  LSPEFIRLVDWPAASLPPGAISDEHA------IDGRVTRTSLSPGEPVLESKLTPVGTKG 112

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--------------VRSLSERKP 165
           GLS+++  GKRA T+ ++    V G   P  +VD+++               ++  E   
Sbjct: 113 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQEAPDGKPAKGAQADREEHS 172

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
              +VL  I V+A+   ++ DE +  V +  TLE+TP +A+ L  A+SV  LSLVLR+  
Sbjct: 173 ISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQV 232

Query: 225 DLNP 228
           D  P
Sbjct: 233 DPRP 236


>gi|17545375|ref|NP_518777.1| pilus assembly transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17427667|emb|CAD14186.1| probable pilus assembly cpab transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 288

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 31/244 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ +++    A +AG+ AM   S   +Q      +  +    V ++  D+ +G  
Sbjct: 1   MKNLRILSMLL---IATIAGLAAMLFASRWLIQ------QGNSGTTKVAVAAVDVNLGQR 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           ++P  +  V +P  ++  G I D H       +DG + R  +  G+P+   KL   G  G
Sbjct: 52  LSPEFIRLVDWPAASLPPGAISDEHA------IDGRVTRTSLSPGEPVLESKLTPVGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--------------VRSLSERKP 165
           GLS+++  GKRA T+ ++    V G   P  +VD+++               ++  E   
Sbjct: 106 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQETPDGKPAKGAQADREEHS 165

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
              +VL  I V+A+   ++ DE +  V +  TLE+TP +A+ L  A+SV  LSLVLR+  
Sbjct: 166 ISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQV 225

Query: 225 DLNP 228
           D  P
Sbjct: 226 DPRP 229


>gi|253701799|ref|YP_003022988.1| Flp pilus assembly protein CpaB [Geobacter sp. M21]
 gi|251776649|gb|ACT19230.1| Flp pilus assembly protein CpaB [Geobacter sp. M21]
          Length = 291

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 105/191 (54%), Gaps = 19/191 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV---PIL 103
            ++++  D+ +G  +TP  L+  ++P++++          P + ++++ V  RV   PI 
Sbjct: 43  RIVVAAADIPIGTAITPAQLKVTSWPKDSI---------PPGSARDIEAVANRVAIRPIT 93

Query: 104 KGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            GD +   KL  R    G G ++ ++P+G RA T+ ++  + V G + P+D VDV++   
Sbjct: 94  GGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPSDRVDVIVTTP 153

Query: 160 L--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKL 216
           L  +E++    +VL N+ ++A     D  E + +V  T TL+L P  A+ LV + S   L
Sbjct: 154 LPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEKLVLSASKGSL 213

Query: 217 SLVLRSIADLN 227
            L+LR+I+D++
Sbjct: 214 QLLLRNISDIS 224


>gi|193213116|ref|YP_001999069.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327]
 gi|193086593|gb|ACF11869.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327]
          Length = 263

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 28/238 (11%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           I ++ V   +A  IA R+     VQT+            V+I    +  G V+ P+ ++ 
Sbjct: 7   IAIALVLGAMAAYIAARM---STVQTD-------GSEAKVVIVAMPIDAGKVIAPDQIKA 56

Query: 69  VAFPEE----NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSS 123
           V +P      N F    D V          G + RV ++ G+P+  +KL  +G  GGL+S
Sbjct: 57  VQWPSSAVPLNAFARTADVV----------GRVARVSMIAGEPVLPDKLALKGAKGGLAS 106

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH-- 181
            LP+GKRA T+ ++   AV G   P  +VD+++      R+     VLS ++V+A+D   
Sbjct: 107 TLPEGKRAITVKVNEVIAVAGFALPGSYVDILVNGKDDNRRSFSRTVLSRVKVLAVDQVT 166

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
             D D+  LV +  T+EL+P +A+ L  A+++  LSLVLR+  D    +SE   + D+
Sbjct: 167 TGDPDKPKLVNAV-TVELSPREAEKLDLARNIGNLSLVLRNELDTAEVNSEGVRLPDI 223


>gi|323529414|ref|YP_004231566.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
 gi|323386416|gb|ADX58506.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
          Length = 278

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 14/189 (7%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  ++++G  +  N++  V +P  +V  G   D   P A   LDG +VR  +  G+P
Sbjct: 39  VAVATAEVSLGQPLNANMIRTVNWPTASVPPGAFKD---PKA---LDGRVVRTSLEPGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           +   KL  +G  GGLS+++ +GKRA T+ ++    V G   P ++VDV++     E K  
Sbjct: 93  VIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPESKTA 152

Query: 167 ------VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                   +VL  I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLV
Sbjct: 153 DPQQSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLV 212

Query: 220 LRSIADLNP 228
           LR+  D  P
Sbjct: 213 LRNQIDDRP 221


>gi|113866745|ref|YP_725234.1| flp pilus assembly protein [Ralstonia eutropha H16]
 gi|113525521|emb|CAJ91866.1| flp pilus assembly protein [Ralstonia eutropha H16]
          Length = 280

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 100/180 (55%), Gaps = 14/180 (7%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL +G  +  + L  V++P  +V  G  +D      M+ L+G +VR  + +G+P+   KL
Sbjct: 45  DLNLGQPLNGSQLRMVSWPTGSVPPGAFED------MKALEGRVVRTSLQRGEPVLDAKL 98

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---- 168
              G  GGLS+++  GKRA T+ ++    V G   P ++VDV+ V +  E K T +    
Sbjct: 99  APVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVI-VNTNEEAKTTQSGSIS 157

Query: 169 -VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+
Sbjct: 158 KIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPEQAEKLDVARSVGTLSLVLRNQLDV 217


>gi|73542328|ref|YP_296848.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
 gi|72119741|gb|AAZ62004.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
          Length = 280

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 19/213 (8%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+++  DL +G  +  + L  V +P  +V  G  +D      ++ L+G +VR  + +G+P
Sbjct: 39  VVVAANDLNLGQPLNGSQLRLVNWPTASVPPGAFED------LKLLEGRVVRTSLQRGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           +   KL   G  GGLS+++  GKRA T+ ++    V G   P ++VDV++  + +E   T
Sbjct: 93  VLDAKLAPIGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIV--NTNEEAKT 150

Query: 167 VT------VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                   +VL  I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLV
Sbjct: 151 AQNGSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLV 210

Query: 220 LRS---IADLNPSSSEDSDVWDVQEEGKEIQII 249
           LR+   +AD+N   +    +     E  +++++
Sbjct: 211 LRNQMDVADINTGGATKGTLLGKAPEAPQVKVV 243


>gi|27378603|ref|NP_770132.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27351751|dbj|BAC48757.1| blr3492 [Bradyrhizobium japonicum USDA 110]
          Length = 329

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 21/171 (12%)

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNGGLSSLLPKGKRAATMDISISSAV 142
           +  P+A   L G LVR  +  G PI L+  L  R  G L+S+L    RA ++ +   S V
Sbjct: 96  LETPDAKAGLTGSLVRKFVEAGSPITLQDVLRPRDRGFLASVLAPDSRAISIKVDEESGV 155

Query: 143 GGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDERV---LVG--- 192
            G+I+P DHVDV++ +   +    R+    VVL N+RVIAID  I    R    L G   
Sbjct: 156 SGLIRPGDHVDVLLTQVFEKADPARRALSEVVLGNVRVIAIDQEIVQGGRTVSSLAGKQA 215

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
            T +LEL P Q K +  A+ +  +SL +R+  +           WD  + G
Sbjct: 216 QTVSLELAPDQVKKITVAKQIGTISLAVRAAVEQ----------WDTADTG 256


>gi|295700371|ref|YP_003608264.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002]
 gi|295439584|gb|ADG18753.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002]
          Length = 276

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 18/217 (8%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            A++AG+ A+   S   +QT        A   +V ++  D+++G  +  N++  V++P  
Sbjct: 12  IAVLAGLAAVSFASRWLLQTSS------AAVTSVAVASSDISLGQPLNQNLIHMVSWPTS 65

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAAT 133
           +V  G   D       + L+G ++   +  G+P+   KL  +G  GGLS+++ +G RA T
Sbjct: 66  SVPPGAFAD------SKALEGRVLLTSLAPGEPVLESKLAPQGTKGGLSAVIGEGHRAIT 119

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNIDSDERV 189
           + ++    V G   P ++VDV++    + +    +    +VL  I V+A+   +  D+  
Sbjct: 120 VRVNDVVGVAGFALPGNYVDVIVNTQQANKTDASQSISKIVLEKILVLAVAQRVSRDDTA 179

Query: 190 -LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 180 PKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVD 216


>gi|170701162|ref|ZP_02892135.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
 gi|170133943|gb|EDT02298.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
          Length = 281

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL +G  + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL
Sbjct: 45  DLNLGEPLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKL 98

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVT 168
              G  GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    
Sbjct: 99  APVGTKGGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISK 158

Query: 169 VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +VL +I V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 159 IVLEHILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216


>gi|115361032|ref|YP_778169.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
 gi|115286360|gb|ABI91835.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
          Length = 281

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL +G  + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL
Sbjct: 45  DLNLGEPLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKL 98

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVT 168
              G  GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    
Sbjct: 99  APVGTKGGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISK 158

Query: 169 VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +VL +I V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 159 IVLEHILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216


>gi|172065272|ref|YP_001815984.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
 gi|171997514|gb|ACB68431.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
          Length = 281

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL +G  + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL
Sbjct: 45  DLNLGEPLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKL 98

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVT 168
              G  GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    
Sbjct: 99  APVGTKGGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISK 158

Query: 169 VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +VL +I V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 159 IVLEHILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216


>gi|329847252|ref|ZP_08262280.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19]
 gi|328842315|gb|EGF91884.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19]
          Length = 311

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 9/146 (6%)

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           G + R  IL  +PI   K+V    GG ++ +L  G RA  + +S+ +  GG I P D VD
Sbjct: 136 GGVAREDILANEPIIDAKIVRSDEGGFMAVMLQPGMRALAVPVSVDNTAGGFILPGDRVD 195

Query: 154 VVMVRSLSERKPTVTV-----VLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKA 206
           +++   L       T+     VL NIRV+AID ++  + D++ ++G+TATLE++P   + 
Sbjct: 196 ILVTHQLPSATGRGTIDSVQPVLRNIRVLAIDQSVAAEQDKQTVIGATATLEVSPGDGQV 255

Query: 207 LVAAQSVAKLSLVLRSIADLN-PSSS 231
           +  A++   LSL+LRS AD   PS +
Sbjct: 256 VTLAKASGTLSLMLRSYADAQGPSGA 281


>gi|319941903|ref|ZP_08016224.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804556|gb|EFW01426.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis
           3_1_45B]
          Length = 295

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 36/216 (16%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
           V++EN A+ ++V  +  +L+ G  ++   +EW A  +    D F+      N  Q+L G 
Sbjct: 36  VVSENKAQ-VSVARAAANLSPGSFLSARDIEWTAVAQSAAKDTFVQ-----NESQDLSGA 89

Query: 97  LVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           LV  PI  G+ I    L+ R +    +++L  G RA T+++ + +   G+++P + VDV+
Sbjct: 90  LVLKPIKAGEVISPSALLARTDPEFVAAVLAPGMRAFTIEVDMVTGGAGLLRPGNRVDVI 149

Query: 156 MV--------RSLSERK--PTVTVVLSNIRVIAIDHNID----------SDERVLVGSTA 195
           +         R+ + +K       +L N+RVIA+DH I+          SD R++  ST 
Sbjct: 150 LAAQTDPQKSRAFASQKNFDVARTLLHNLRVIAVDHTIEPKGFGADPQSSDPRMVRSSTP 209

Query: 196 ---------TLELTPMQAKALVAAQSVAKLSLVLRS 222
                    TLE+TP   + L  A+S  +LSL LR+
Sbjct: 210 ANINRKGTVTLEVTPKDVELLTVARSNGQLSLSLRN 245


>gi|144898050|emb|CAM74914.1| Flp pilus assembly protein CpaB [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 288

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 20/209 (9%)

Query: 34  TEEVITENP---AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
           T++  T  P   A  + VL+   D+A G  ++   L +  +P  N    F+      +  
Sbjct: 27  TDKQSTARPTVAADSVEVLVLARDVATGSALSDADLRYENWPAVNAGR-FMTRKDGDDPK 85

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
               G + R P+ +G+P        R G+G L+ +L  G RA ++ IS +SAV G + P 
Sbjct: 86  ARAIGAVARRPLSEGEPFTPSATFTRDGSGILAGMLAPGMRAVSVAISNASAVSGFVVPG 145

Query: 150 DHVDVVMV----RSLSER---------KPTVTVVLSNIRVIAIDHNID--SDERVLVGST 194
           D VDVV+     R+ SE          +     VL++++V+A+D       D   + G T
Sbjct: 146 DRVDVVLAADFQRADSEAAGKGGGAIVRYAAETVLADVKVLAVDQQFSKGKDGPTIQGKT 205

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           ATLE++P QA+ LV A  + +LSL+LR +
Sbjct: 206 ATLEVSPDQAEILVTAGLMGQLSLILRGV 234


>gi|167579113|ref|ZP_02371987.1| pilus assembly protein [Burkholderia thailandensis TXDOH]
          Length = 279

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 12/193 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+ +G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKSLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLR 212

Query: 222 SIADLNPSSSEDS 234
           +  D +  ++E +
Sbjct: 213 NQVDKSALTTEGA 225


>gi|83717368|ref|YP_440455.1| pilus assembly protein [Burkholderia thailandensis E264]
 gi|167617228|ref|ZP_02385859.1| pilus assembly protein [Burkholderia thailandensis Bt4]
 gi|257141103|ref|ZP_05589365.1| pilus assembly protein [Burkholderia thailandensis E264]
 gi|83651193|gb|ABC35257.1| pilus assembly protein [Burkholderia thailandensis E264]
          Length = 279

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 12/191 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+ +G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKSLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLR 212

Query: 222 SIADLNPSSSE 232
           +  D +  ++E
Sbjct: 213 NQVDKSALTTE 223


>gi|307726374|ref|YP_003909587.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
 gi|307586899|gb|ADN60296.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
          Length = 278

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V +   ++++G  +  N++  V +P  +V  G   D   P A   LDG +VR  +  G+P
Sbjct: 39  VAVVTAEVSLGQPLNANMIRTVNWPTASVPPGAFKD---PKA---LDGRVVRTSLEPGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           +   KL  +G  GGLS+++ +GKRA T+ ++    V G   P ++VDV++     E K  
Sbjct: 93  VIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAKTA 152

Query: 167 ------VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                   +VL  I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLV
Sbjct: 153 DPQHSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLV 212

Query: 220 LRSIADLNP 228
           LR+  D  P
Sbjct: 213 LRNQIDDRP 221


>gi|54302291|ref|YP_132284.1| Flp pilus assembly protein [Photobacterium profundum SS9]
 gi|46915713|emb|CAG22484.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           SS9]
          Length = 264

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 105/202 (51%), Gaps = 13/202 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V+   VQ +EV+ E P   +  ++++  + +G  +    L    +P + V     +   Q
Sbjct: 45  VTQVEVQIKEVMKEEPK--VPRVMAQQRIPLGTKIEAKHLSIEYYPTDLVKSKGYETPEQ 102

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145
                 + G+L R  I +GD +R E+LV  G G  L++L+    RA T+ ++    V G 
Sbjct: 103 ------VVGMLARNEIFEGDLLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGF 156

Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204
           + P D VDV+ ++   E+      VL  I+++A+D    +D+ + ++    TLELTP QA
Sbjct: 157 LLPGDFVDVIYIK---EKSNNAITVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQA 213

Query: 205 KALVAAQSVAKLSLVLRSIADL 226
           ++LV A+S  +L L LR+  D+
Sbjct: 214 ESLVTAKSKGELQLSLRNPNDI 235


>gi|145219385|ref|YP_001130094.1| SAF domain-containing protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145205549|gb|ABP36592.1| SAF domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 262

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 8/181 (4%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+I    + +G  +T   ++ V +P  ++  G +          E+ G + RV ++ G+
Sbjct: 34  KVVIVAQPIELGKAITTEQIKTVNWPGADIPQGAVSKA------TEVVGRIARVSMMPGE 87

Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           P+   KL  +G  GGL+S++  GKRA T+ ++   AV G   P   VD+++    + R+P
Sbjct: 88  PVLPGKLAPKGATGGLASIISDGKRAITVKVNEVIAVAGFALPGSFVDILVSGKDANRQP 147

Query: 166 TVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
               VLS ++V+A+     ++ ++  V +  TLELTP +++ L  A+S+  LSLVLR+  
Sbjct: 148 FSRTVLSRVKVLAVAQETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGALSLVLRNEL 207

Query: 225 D 225
           D
Sbjct: 208 D 208


>gi|53723206|ref|YP_112191.1| pilus assembly-related, exported protein [Burkholderia pseudomallei
           K96243]
 gi|76817358|ref|YP_336468.1| pilus assembly transmembrane protein [Burkholderia pseudomallei
           1710b]
 gi|126444606|ref|YP_001064075.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|126455786|ref|YP_001076988.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|167829714|ref|ZP_02461185.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 9]
 gi|167899812|ref|ZP_02487213.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           7894]
 gi|167916475|ref|ZP_02503566.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           112]
 gi|217424287|ref|ZP_03455786.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|226194084|ref|ZP_03789685.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237507313|ref|ZP_04520028.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242313081|ref|ZP_04812098.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254182584|ref|ZP_04889178.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|254187135|ref|ZP_04893650.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254262844|ref|ZP_04953709.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
 gi|254296484|ref|ZP_04963940.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
 gi|52213620|emb|CAH39674.1| putative pilus assembly-related, exported protein [Burkholderia
           pseudomallei K96243]
 gi|76581831|gb|ABA51305.1| pilus assembly transmembrane protein [Burkholderia pseudomallei
           1710b]
 gi|126224097|gb|ABN87602.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|126229554|gb|ABN92967.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|157806446|gb|EDO83616.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
 gi|157934818|gb|EDO90488.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184213119|gb|EDU10162.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|217392752|gb|EEC32775.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|225934029|gb|EEH30015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|234999518|gb|EEP48942.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242136320|gb|EES22723.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254213846|gb|EET03231.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
          Length = 281

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212

Query: 222 SIAD 225
           +  D
Sbjct: 213 NQVD 216


>gi|167574002|ref|ZP_02366876.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis
           C6786]
          Length = 282

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           D+ +G  + PN L  V +P  +V  G   DV      + L+G +VR  + +G+P+   KL
Sbjct: 45  DVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KSLEGRVVRTSLARGEPVLGSKL 98

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTV-- 169
              G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P  ++  
Sbjct: 99  APVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADPQQSISK 158

Query: 170 -VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
            VL  I V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 159 IVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVD 216


>gi|167744174|ref|ZP_02416948.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 14]
          Length = 281

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212

Query: 222 SIAD 225
           +  D
Sbjct: 213 NQVD 216


>gi|254192395|ref|ZP_04898834.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|169649153|gb|EDS81846.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
          Length = 281

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212

Query: 222 SIAD 225
           +  D
Sbjct: 213 NQVD 216


>gi|167725246|ref|ZP_02408482.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           DM98]
          Length = 245

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212

Query: 222 SIAD 225
           +  D
Sbjct: 213 NQVD 216


>gi|167566933|ref|ZP_02359849.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis
           EO147]
          Length = 274

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           D+ +G  + PN L  V +P  +V  G   DV      + L+G +VR  + +G+P+   KL
Sbjct: 37  DVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KSLEGRVVRTSLARGEPVLGSKL 90

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTV-- 169
              G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P  ++  
Sbjct: 91  APVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADPQQSISK 150

Query: 170 -VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
            VL  I V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 151 IVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVD 208


>gi|167821373|ref|ZP_02453053.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 91]
          Length = 251

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212

Query: 222 SIAD 225
           +  D
Sbjct: 213 NQVD 216


>gi|167851181|ref|ZP_02476689.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           B7210]
          Length = 253

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212

Query: 222 SIAD 225
           +  D
Sbjct: 213 NQVD 216


>gi|162147490|ref|YP_001601951.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545597|ref|YP_002277826.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786067|emb|CAP55649.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533274|gb|ACI53211.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 292

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 124/273 (45%), Gaps = 48/273 (17%)

Query: 6   LMGIVVSGVFALVAG---IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           L+G+V+ G  AL +G   ++A              +TE     + VL+++     G ++ 
Sbjct: 15  LIGVVILGRLALHSGEKPVVAQ-------------VTEKKVPTVGVLVARKAEPAGALLQ 61

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-L 121
              L+   FP   V  G I DV  P+    L G L+RVP+ +G  +  E ++  G+ G L
Sbjct: 62  SGDLQTKDFPANLVPPGAIHDV--PSERAALTGGLLRVPVPEGGLLTNEAVLRVGDHGFL 119

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------------- 162
           +++L  G  A ++ +   S V  +I+P D+VD+++   ++                    
Sbjct: 120 AAVLKPGDSAVSVGVDSVSGVADLIEPGDYVDLIVTHDVATADVANSGGGAGGNPGGDAG 179

Query: 163 -RKPTVTVVLSNIRVIAID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
             +     VLS +RV+AID    H    D R +   T TLE+TP QA+A+  A  + +L+
Sbjct: 180 GGRIAAETVLSALRVVAIDREMQHTSTVDSRGVGNRTVTLEVTPAQAEAVAVAGRLGRLT 239

Query: 218 LVLRS-----IADLNPSSSEDSDVWDVQEEGKE 245
           L +RS     +A   P ++   DV      G E
Sbjct: 240 LAVRSLDQAGVAAFAPHTTWGGDVSPALAHGPE 272


>gi|94497253|ref|ZP_01303825.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58]
 gi|94423358|gb|EAT08387.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58]
          Length = 337

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 13/190 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL++   L VG ++      +  +P++ V   +        A   L G ++R  I  G 
Sbjct: 48  HVLVAVKALPVGTILDAESFRFQPWPKDLVEQAYYLRGQADPA--RLAGSVIRTAITAGQ 105

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161
           P+    LV  G+ G L++ L  G RA T+ +S  ++V G + P D +D+V+ +S++    
Sbjct: 106 PLTQGSLVKPGDRGFLAAALAPGMRAVTVPVSAQTSVAGFVFPGDRIDLVLTQSVAGGGD 165

Query: 162 -ERKPTVTVVLSNIRVIAIDHNIDS---DERVLVG--STATLELTPMQAKALVAAQSVAK 215
            E       +L N+RV+A D  +D+   D + +V   S  TLE+TP  A+ +  AQ+V  
Sbjct: 166 GEPLKVSETILRNLRVLATDQRMDALGPDGKPVVQTYSNVTLEVTPKIAEKIAVAQTVGS 225

Query: 216 LSLVLRSIAD 225
           LS+ LRS+AD
Sbjct: 226 LSMSLRSMAD 235


>gi|167924331|ref|ZP_02511422.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           BCC215]
          Length = 281

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212

Query: 222 SIAD 225
           +  D
Sbjct: 213 NQID 216


>gi|187927688|ref|YP_001898175.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
 gi|187724578|gb|ACD25743.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
          Length = 283

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 20/226 (8%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           + ALVAGI A+   S    Q      ++ +    V+++  D+ +G  +    L  V++P 
Sbjct: 11  IVALVAGIAAVVSASRWLSQ------QSTSSVKQVVVAASDMDLGQPLGNEQLRTVSWPA 64

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
            ++  G  DD   P A+Q   G +VR  + KG+PI   KL   G  GGLS+++ +GKRA 
Sbjct: 65  GSLPPGTFDD---PKALQ---GRVVRASLQKGEPILENKLAPIGTKGGLSAVIAEGKRAI 118

Query: 133 TMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
           T+ ++    V G   P + VDV++        + +       +VL  I V+A+   +  D
Sbjct: 119 TVRVNDVVGVAGFALPGNLVDVIVNTNEDAKSASNNNNSISKIVLEKILVLAVAQQVSRD 178

Query: 187 E-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           + +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+  +++
Sbjct: 179 DTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQVDVAATAT 224


>gi|167624206|ref|YP_001674500.1| SAF domain-containing protein [Shewanella halifaxensis HAW-EB4]
 gi|167354228|gb|ABZ76841.1| SAF domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 270

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 20/218 (9%)

Query: 14  VFALVAGIIAMRLVS---PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           + +LV G+ A+ L       + QTE V T +     NV+    ++ +G ++    L    
Sbjct: 10  ILSLVFGVTAVYLAQSWLKSNTQTETVGTTS-----NVITMVTEVPLGTIIERKHLALTP 64

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGK 129
            PE  V  G I D+       E +G +V+  + +G+ +R E+L  +G G  L+SL+    
Sbjct: 65  VPENLVPKGAITDI------TEAEGQVVKHRLYQGEVLRKERLTPKGEGSTLASLITPTM 118

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER- 188
           RA T+ ++    V G + P + VD++ +   S  K    +VLSN++++AID    +DE  
Sbjct: 119 RAVTIRVNDVVGVAGFLLPGNRVDIINIFKSSGLK--TDIVLSNVKILAIDQKASNDENK 176

Query: 189 -VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
            VLV +  TLEL+  QA+ L+ A+S   L L LR+  D
Sbjct: 177 PVLVRA-VTLELSLEQAEVLMIAKSRGSLQLALRNPND 213


>gi|197117447|ref|YP_002137874.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
 gi|197086807|gb|ACH38078.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
          Length = 291

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 108/201 (53%), Gaps = 19/201 (9%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           +EV +   A+   ++++  D+ +G  +TP  L+  ++P++++          P + + ++
Sbjct: 31  QEVKSAKAAQPQRIVVAAVDIPIGTAITPAQLKVASWPKDSI---------PPGSARGIE 81

Query: 95  GVLVRV---PILKGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
            V  RV   PI  GD +   KL  R    G G ++ ++P+G RA T+ ++  + V G + 
Sbjct: 82  AVANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLT 141

Query: 148 PNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204
           P+D VDV++   +  +E++    +VL N+ ++A     D  E + +V  T TL+L P  A
Sbjct: 142 PSDRVDVIVTTPVPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDA 201

Query: 205 KALVAAQSVAKLSLVLRSIAD 225
           + LV + S   L L+LR+I+D
Sbjct: 202 EKLVLSASKGSLQLLLRNISD 222


>gi|78186538|ref|YP_374581.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
 gi|78166440|gb|ABB23538.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
          Length = 262

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 81/137 (59%), Gaps = 2/137 (1%)

Query: 97  LVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           + RV ++ G+P+   KL  +G  GGL+S++P GKRA T+ ++   AV G   P  +VDV+
Sbjct: 78  IARVSMMPGEPVLPGKLAPKGATGGLASIIPDGKRAITVKVNEVIAVAGFALPGSYVDVL 137

Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +    +  +P    VL+ ++V+AI     ++ ++  V +  TLELTP +++ L  A+S+ 
Sbjct: 138 VSGKDASHQPFARTVLNRVKVLAIAQETTAEPDKPKVVNAVTLELTPHESEKLDLARSIG 197

Query: 215 KLSLVLRSIADLNPSSS 231
            LSLVLR+  D    +S
Sbjct: 198 SLSLVLRNELDTGEENS 214


>gi|90411207|ref|ZP_01219220.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
 gi|90328053|gb|EAS44374.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
          Length = 266

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 103/202 (50%), Gaps = 13/202 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V+   VQ +EV+ E P   +  + ++  + +G  +    L    +P + V     +   Q
Sbjct: 45  VTQVEVQIKEVMKEEPK--VPRVTAQQRIPLGTKIEAKHLSIEYYPTDLVSTKGYETPEQ 102

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145
                 + G+L R  I +GD +R E+LV  G G  L++L+    RA T+ ++    V G 
Sbjct: 103 ------VVGMLARNEIFEGDLLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGF 156

Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204
           + P D VDV+  +   E+      VL  I+++A+D    +D+ + ++    TLELTP QA
Sbjct: 157 LLPGDFVDVIYTK---EKSNNAVTVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQA 213

Query: 205 KALVAAQSVAKLSLVLRSIADL 226
           ++LV A+S  +L L LR+  D+
Sbjct: 214 ESLVTAKSKGELQLSLRNPNDI 235


>gi|186474102|ref|YP_001861444.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
 gi|184196434|gb|ACC74398.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
          Length = 282

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 25/229 (10%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A  AG+ A+   +   VQ     T        V+I+  D+++G  V+P +L+   +P  +
Sbjct: 13  ATAAGLAAVVFAARWMVQQTSTST------TKVVIASADMSLGQRVSPEMLKVSDWPAGS 66

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATM 134
           V  G  +DV      ++L+G +++  + +G+P+   KL   G  GGLS+++ +GKRA T+
Sbjct: 67  VPPGTFNDV------KKLEGRVLKASLSRGEPVLEAKLSPVGTLGGLSAVINEGKRAITV 120

Query: 135 DISISSAVGGMIKPNDHVDVVMVR----------SLSERKPTVT-VVLSNIRVIAIDHNI 183
            ++    V G   P ++VD+++              S R   ++ +VL  I V+A+    
Sbjct: 121 RVNDVIGVAGFALPGNYVDILVNTEKENASREGAGASGRDQNISKIVLEKILVLAVAQEA 180

Query: 184 DSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
             DE +  V    TLE+TP QA+ +  A+S+  LSLVLR+  D   +S+
Sbjct: 181 GRDETKPKVVDAVTLEVTPEQAEKIDLARSIGSLSLVLRNQVDPQDTST 229


>gi|167908128|ref|ZP_02495333.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           NCTC 13177]
          Length = 256

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 12/184 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G + R  + +G+P
Sbjct: 39  VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVARTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             ++   VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212

Query: 222 SIAD 225
           +  D
Sbjct: 213 NQVD 216


>gi|224824212|ref|ZP_03697320.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002]
 gi|224603631|gb|EEG09806.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002]
          Length = 282

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 26/229 (11%)

Query: 9   IVVSGVFALVAGIIAMRLVSPH-HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
           IVVS +  LVA ++A + ++   +V  ++V+           ++  D+ +G  ++P +L 
Sbjct: 2   IVVSVIIGLVAVVMASQWINKQTNVAAQKVV-----------VASMDIDLGSKLSPEMLR 50

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126
            V +P  ++ +G I D   P A   LDG +++  + +G+ I   KL   G  GGLS+++ 
Sbjct: 51  SVDWPSGSIPEGAILD---PKA---LDGRVLKTSVNRGEAILESKLAPVGTKGGLSAVVM 104

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSNIRVIAID 180
           +GKRA T+ ++    V G   P ++VD+++  +   +K          +VL +I V+A+ 
Sbjct: 105 EGKRAMTVRVNDVVGVAGFALPGNYVDILVNTTDDAKKGQNNDASISKIVLEHILVLAVA 164

Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
                D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D  P
Sbjct: 165 QEASRDDTKPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDPKP 213


>gi|23016178|ref|ZP_00055937.1| COG3745: Flp pilus assembly protein CpaB [Magnetospirillum
           magnetotacticum MS-1]
          Length = 296

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 34/248 (13%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP--NAMQELDGVLVRV 100
           A  + VL+   D+  G  ++ + L + ++P        +  V +P  +A     G++ R 
Sbjct: 30  APVVEVLVINRDVPSGAALSVDDLRYESWPRSAATARLV--VRRPGEDAKAAFVGMIARR 87

Query: 101 PILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            + +G+P+         + G L+ LL  GKRA ++ I+  +AV G I P D VDVVM+  
Sbjct: 88  ALTEGEPVSAATTFKPDSSGVLAGLLGPGKRAISITITNPTAVSGFITPGDRVDVVMLTD 147

Query: 160 LS--------ERKPT--------------VTVVLSNIRVIAIDHNI--DSDERVLVGSTA 195
           L         E K                   VLS+IRV+AID  I    D   + G TA
Sbjct: 148 LKKIEDAQGRESKQEEGRFGGETLLVRFGAETVLSDIRVLAIDQQITRGRDGAAIQGKTA 207

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS-SSEDSDVWDVQ---EEGKEIQIIKA 251
           TLE+TP QA+ LV A+++  L L LR      P+ + +  ++ D     E GK +Q    
Sbjct: 208 TLEVTPKQAEILVLAETMGMLQLSLRPQQGDGPAVAPQPGEMLDFTADLEAGKALQ-ASV 266

Query: 252 GVIVNKDG 259
           G    K G
Sbjct: 267 GFAAKKKG 274


>gi|194288837|ref|YP_002004744.1| pilus assembly transmembrane protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193222672|emb|CAQ68675.1| PILUS ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG
           19424]
          Length = 279

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 14/180 (7%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL +G  +    L  V++P  +V  G   D      ++ L+G +VR  + +G+PI   KL
Sbjct: 45  DLNLGQPLNGAQLRMVSWPAGSVPPGAFTD------LKALEGRVVRTSLQRGEPILDAKL 98

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---- 168
              G  GGLS+++  GKRA T+ ++    V G   P ++VDV+ V +  E K +      
Sbjct: 99  APVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVI-VNTNEEAKSSQNSSIS 157

Query: 169 -VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+   +  DE +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+
Sbjct: 158 KIVLEKILVLAVAQQVSRDETQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDV 217


>gi|260776716|ref|ZP_05885611.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607939|gb|EEX34204.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 247

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 7/154 (4%)

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141
           D  Q  + +EL G +V   I  G+ I   +L   G G  L++L+P+ KRA T+ ++    
Sbjct: 75  DEFQFTSSEELIGQVVATSIFPGEIINQNRLTVPGEGSTLAALIPENKRAVTIRVNDVIG 134

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELT 200
           V G + P + VD++     SE   + + VL +I+V+A+D    + D + ++    TLE+T
Sbjct: 135 VAGFLLPGNKVDILSTVKYSETSASTSTVLKDIKVLAVDQTARTKDNKPIIVRAVTLEVT 194

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           P QA+ L+ A+S  ++ L LR     NP   E +
Sbjct: 195 PRQAEKLLTARSKGEIQLTLR-----NPHEEEKA 223


>gi|258621446|ref|ZP_05716480.1| Pilus assembly protein [Vibrio mimicus VM573]
 gi|262165920|ref|ZP_06033657.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223]
 gi|258586834|gb|EEW11549.1| Pilus assembly protein [Vibrio mimicus VM573]
 gi|262025636|gb|EEY44304.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223]
          Length = 250

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 7/153 (4%)

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141
           ++ Q +  + L G +V  PI +G+ I +++L   G G  L+SL+P+  RA T+ ++    
Sbjct: 75  NISQFSDTKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRVNDVIG 134

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200
           V G + P + VDV+   S S+       VL +I+V+A+D    S E + ++    TLE+T
Sbjct: 135 VAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVT 194

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           P QA+ L++AQS  ++ L LR     NP   E+
Sbjct: 195 PEQAEKLLSAQSKGEIQLTLR-----NPHEPEE 222


>gi|262171231|ref|ZP_06038909.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451]
 gi|261892307|gb|EEY38293.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451]
          Length = 250

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 7/143 (4%)

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L G +V  PI +G+ I +++L   G G  L+SL+P+  RA T+ ++    V G + P + 
Sbjct: 85  LVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRVNDVIGVAGFLLPGNR 144

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAA 210
           VDV+   S S+       VL +I+V+A+D    S E + ++    TLE+TP QA+ L++A
Sbjct: 145 VDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVTPEQAEKLLSA 204

Query: 211 QSVAKLSLVLRSIADLNPSSSED 233
           QS  ++ L LR     NP   E+
Sbjct: 205 QSKGEIQLTLR-----NPHEPEE 222


>gi|167841424|ref|ZP_02468108.1| putative pilus assembly protein CpaB [Burkholderia thailandensis
           MSMB43]
          Length = 281

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 12/184 (6%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  D+ +G  + PN L  V +P  +V  G   D      ++ L+G +VR  + +G+P
Sbjct: 39  VAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92

Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165
           +   KL   G  GGLS+++  G RA T+ ++    V G   P ++VDV++  +  S+  P
Sbjct: 93  VLGTKLAPIGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152

Query: 166 TVT---VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             +   +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR
Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPDQAEKLDLARSVGTLSLVLR 212

Query: 222 SIAD 225
           +  D
Sbjct: 213 NQID 216


>gi|297618080|ref|YP_003703239.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145917|gb|ADI02674.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM
           12680]
          Length = 242

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 30/227 (13%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           +F L A ++A R ++    + E      P   + V+++  D+    V+T   ++    P 
Sbjct: 13  LFGLAATVLAYRYIAGVKARYE------PKNLVQVVVAATDIPKNSVITREKVKLELVPA 66

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVP---ILKGDPIRLEKLVD--RGNGGLSSLLPKG 128
           +            P A+++LD V+ RV    I+ G+ I   K++        L+  +P G
Sbjct: 67  Q---------FAHPAAVRDLDEVVGRVAASYIVAGEEILSAKIISDAEKTNKLAYAVPMG 117

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSNIRVIAIDHNIDS 185
           KRA ++ ++  S V G+++P D VDV+    L+  +  V V   +L ++ V+A+D N+D 
Sbjct: 118 KRAVSVPVNAVSGVSGLVRPGDRVDVIATVELASGQENVAVTSFILQDVEVLAVDQNLDE 177

Query: 186 DERV-------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
            + V          +T TL +TP +A+ LV A     + L LR+ AD
Sbjct: 178 TKPVPAAKEEAAPATTVTLAVTPEEARPLVLASEQGSIRLALRAPAD 224


>gi|163738371|ref|ZP_02145786.1| CpaB family protein [Phaeobacter gallaeciensis BS107]
 gi|161388292|gb|EDQ12646.1| CpaB family protein [Phaeobacter gallaeciensis BS107]
          Length = 286

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG---FIDDVHQPNAMQELDGVLVRVP 101
            ++V I+   L  G  +T + +  V +PE  + +G    +D +  P    +L  VL R+ 
Sbjct: 47  LVDVFIANDQLKYGERLTRDSVRSVRWPENAIPEGAFLTMDALFPPQYPDDLRVVLRRME 106

Query: 102 ILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
             K + I   K+   G + G++S L KG RA  + + +SS V G ++P DHVDV    SL
Sbjct: 107 --KDEAILAVKVTKPGEDAGITSRLAKGMRAFAIRVDVSSGVSGFLRPGDHVDVYWTGSL 164

Query: 161 SERK-----PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +++          ++ +NI +IA+D     D +  ++  T T  + P Q  AL  AQS  
Sbjct: 165 NDQNGGRNGEFTRLIQTNIELIAVDQTAGGDLDGAVIARTVTAAVRPEQVAALAQAQSTG 224

Query: 215 KLSLVLRSIAD 225
           +LSL L    D
Sbjct: 225 RLSLSLVGAGD 235


>gi|94309593|ref|YP_582803.1| Flp pilus assembly CpaB [Cupriavidus metallidurans CH34]
 gi|93353445|gb|ABF07534.1| Flp pilus assembly CpaB precursor [Cupriavidus metallidurans CH34]
          Length = 281

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 104/183 (56%), Gaps = 15/183 (8%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL +G  +  + L+ V++P  +V  G  +D       + LDG +VR  + +G+PI   KL
Sbjct: 45  DLDLGQPLNGSQLKLVSWPAGSVPPGAFED------PKTLDGRVVRTSLQRGEPIIDAKL 98

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVT- 168
              G  GGLS+++  GKRA T+ ++    V G   P ++VDV++     + S +  +++ 
Sbjct: 99  APVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEDTKSAQNGSISK 158

Query: 169 VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS---IA 224
           +VL  I V+A+   +  D+ +  V +  TLE++P QA+ L  A+SV  LSLVLR+   +A
Sbjct: 159 IVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVSPDQAEKLDVARSVGTLSLVLRNQMDVA 218

Query: 225 DLN 227
           D+N
Sbjct: 219 DIN 221


>gi|56477529|ref|YP_159118.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1]
 gi|56313572|emb|CAI08217.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1]
          Length = 283

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 14/182 (7%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           +L +G  + P  +  V +P  ++  G   D      + +LDG +    I  G+P+   +L
Sbjct: 44  ELQLGSRIAPEAIRLVEWPSGSIPAGAFHD------LAKLDGRVAITGIQPGEPVLESRL 97

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPT 166
              G  GGLS+++P+GKRA T+ ++    V G   P ++VD+++          S  +  
Sbjct: 98  APEGTKGGLSAVVPEGKRAITVRVNDVIGVAGFTLPGNYVDIMVNTENTGANRNSADQMI 157

Query: 167 VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             +VL  I V+A+    + DE +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D
Sbjct: 158 SKIVLERILVLAVAQEANRDETKPKVVNAVTLEVTPEQAERLDLARSVGNLSLVLRNQID 217

Query: 226 LN 227
            N
Sbjct: 218 SN 219


>gi|194335912|ref|YP_002017706.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308389|gb|ACF43089.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 263

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 78/133 (58%), Gaps = 2/133 (1%)

Query: 95  GVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           G +  V ++ G+P+   KL      GGLSS++PKGKRA T+ ++   AV G   P  +VD
Sbjct: 77  GRIALVSMMPGEPVLPGKLAPTTATGGLSSIIPKGKRAITVKVNEVIAVAGFALPGSYVD 136

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQS 212
           V++    + ++P    VL  ++V+AI     +D ++  V +  TLELTP +A+ L  A++
Sbjct: 137 VLVSSKDANQQPFSVTVLLRVKVLAIAQETTADRDKPKVVNAVTLELTPHEAEKLDLARN 196

Query: 213 VAKLSLVLRSIAD 225
           +  LSLVLR+  D
Sbjct: 197 IGALSLVLRNEFD 209


>gi|157961833|ref|YP_001501867.1| SAF domain-containing protein [Shewanella pealeana ATCC 700345]
 gi|157846833|gb|ABV87332.1| SAF domain protein [Shewanella pealeana ATCC 700345]
          Length = 272

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 19/234 (8%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           + +LV G+ A+ L + + ++T    TE  A   NV+    ++ +G ++    L      +
Sbjct: 10  ILSLVFGVTAVYL-AQNWLKTN-TKTEAVASTSNVMTMVTEVPLGTIIERKHLALTPVAD 67

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAA 132
             + +G I D+       E +G +V+  + +G+ +R E++  +G G  L+SL+    RA 
Sbjct: 68  NLIPEGAITDI------TEAEGFVVKHRLYQGEVLRKERITPKGEGSTLASLITPTMRAV 121

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER--VL 190
           T+ ++    V G + P + VD++ + +    K    +VLSN++++AID    +DE   VL
Sbjct: 122 TIRVNDVVGVAGFLLPGNRVDIINIFTTPSLK--TDIVLSNVKILAIDQKASNDENKPVL 179

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           V +  TLEL+  QA+ L+ A+S   L L LR     NP+ +   ++ D++E  K
Sbjct: 180 VRA-VTLELSLEQAETLMIAKSRGSLQLALR-----NPNDTAVIELADIEEANK 227


>gi|260778163|ref|ZP_05887056.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606176|gb|EEX32461.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 279

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 25/211 (11%)

Query: 34  TEEVITENPAK-FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ- 91
           +E    E P + F  VL+S  D+ VG V TPN+  W +  EE + D ++D V +      
Sbjct: 28  SEHQTKEQPEQVFQRVLVSGQDIGVGDVYTPNMFRWQSLSEEQLSD-YVDYVTEDEITSI 86

Query: 92  ELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
            L   +  + I +G  I    L+  +G   L+  +  G RA ++ +   +A  G ++P D
Sbjct: 87  NLASGIAHIAIKQGQVIAAADLIPPQGGASLALKVRAGYRAVSVPVDQVTANSGFVQPGD 146

Query: 151 HVDVVMVRS-LSERKP--------TVTVVLSNIRVIAIDHNIDSDE-----------RVL 190
            VD++++ S +SE K          V+ + +N+R++A + N+ S E           ++ 
Sbjct: 147 KVDILLLGSKVSELKKYDNVVEGLYVSTIATNVRILAFN-NLSSSEGFQEKRHDYGAKIP 205

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             S+ +LE+TP QA  +V A  + +L+L LR
Sbjct: 206 DNSSVSLEVTPEQATQIVLANQLGRLTLSLR 236


>gi|292491518|ref|YP_003526957.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4]
 gi|291580113|gb|ADE14570.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4]
          Length = 265

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 99/183 (54%), Gaps = 10/183 (5%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+++  ++  G  +    L+ +++P +N+ +G     H+ +A   ++G +    I  G+P
Sbjct: 47  VVVAALEIPFGQKIETMHLKVISWPADNMPEGIF---HETSA---VEGRVASQKIYPGEP 100

Query: 108 IRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERK 164
           I  ++ V++ G   LS+++P+ KRA T+ ++    V G + P + VDV+  R +  S+ K
Sbjct: 101 IMKDRAVEQLGGSTLSAIVPRDKRAVTVRVNDVIGVAGFLLPGNQVDVLSSRKIDRSQNK 160

Query: 165 PTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
             +  +L N++V+A+D     D+ + LV    TLE  P QA+ L  A     + LVLR+ 
Sbjct: 161 VQIETILQNLKVLAVDQTASQDKNQPLVVRAVTLEADPKQAEKLFKATEEGTIQLVLRNP 220

Query: 224 ADL 226
            D+
Sbjct: 221 QDV 223


>gi|328953762|ref|YP_004371096.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM
           11109]
 gi|328454086|gb|AEB09915.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM
           11109]
          Length = 272

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 12/175 (6%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           ++A G V+ P +L+ V  P+E+V      D      ++ L+G + R  I+ G+ I+  +L
Sbjct: 51  NIAPGSVLIPELLKVVQLPKEHVAADAATD------LKALEGRVTRQLIVAGEVIQEHEL 104

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVV 170
             +G  GG++ ++   KRA T+ +  +S V G I P + VDV++    +E K  P   +V
Sbjct: 105 APKGAPGGMAGIIGNDKRAVTIKVDEASGVAGFIVPGNRVDVLLSLDRNEFKNDPVTQIV 164

Query: 171 LSNIRVIAIDHNID---SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
           L N+ V+    +I+   + ER  V  T TLE+TP + + L  A     ++L LR 
Sbjct: 165 LQNLPVLGTGQDIEQQKAGERPKVVPTVTLEVTPEEGERLALAAKEGTITLALRG 219


>gi|163742212|ref|ZP_02149600.1| CpaB family protein [Phaeobacter gallaeciensis 2.10]
 gi|161384542|gb|EDQ08923.1| CpaB family protein [Phaeobacter gallaeciensis 2.10]
          Length = 266

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 12/191 (6%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG---FIDDVHQPNAMQELDGVLVRVP 101
            ++V I+   L  G  +T   +  V +PE  + +G    +D +  P    +   VL R+ 
Sbjct: 27  LVDVFIANTQLKYGERLTKEHIRSVRWPENAIPEGAFLTMDALFPPQYPDDHRVVLRRME 86

Query: 102 ILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
             K + I   K+   G + G++S L KG RA  + + +SS V G ++P DHVDV    SL
Sbjct: 87  --KDEAILAVKVTKPGEDAGITSRLSKGMRAFAIRVDVSSGVSGFLRPGDHVDVYWTGSL 144

Query: 161 SERK-----PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +++          ++ +NI +IA+D     D +  ++  T T  + P Q  AL  AQS  
Sbjct: 145 NDQNGGRNGEFTRLIQTNIELIAVDQTAGGDLDGAVIARTVTAAVRPEQVAALAQAQSTG 204

Query: 215 KLSLVLRSIAD 225
           +LSL L    D
Sbjct: 205 RLSLSLVGAGD 215


>gi|83312839|ref|YP_423103.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1]
 gi|82947680|dbj|BAE52544.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1]
          Length = 300

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 30/241 (12%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEV----ITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           V AL AG  AM  ++   +  +E       + PA  + +LI   D+  G  +  + L + 
Sbjct: 10  VAALAAGGTAM--LAKSWLDRQEARRAKAADEPAT-VEILIINRDVPSGAALAGDDLRYE 66

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNGGLSSLLPKG 128
           ++P+  V    +      ++     G++ R P+ +G+P+          +G ++ LL  G
Sbjct: 67  SWPKAAVSPRLVTRKPGEDSKAAFVGMIARRPLAEGEPVSAATTFRPEASGVMAGLLAPG 126

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------------VVLSNI 174
            RA ++ I+  +AV G + P D VDVV+   + + +  +                VL+++
Sbjct: 127 MRAISIAITNPTAVSGFVTPGDRVDVVLASDIKKSEEGINAEAGSGLLLRYGAETVLADL 186

Query: 175 RVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           RV+AID  I    D   + G TATLE+TP QA+ L  A  +  L L LR      P   E
Sbjct: 187 RVLAIDQQITRGRDGAPIQGKTATLEVTPKQAEILTVAGMMGTLQLSLR------PQRGE 240

Query: 233 D 233
           D
Sbjct: 241 D 241


>gi|261252086|ref|ZP_05944659.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
 gi|260935477|gb|EEX91466.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
          Length = 247

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141
           D  Q    +EL G +    I  G+ I   +L   G G  L+SL+P+ KRA T+ ++    
Sbjct: 75  DELQFTKAEELVGQVAATTIYPGEIIHPNRLSSSGEGSTLASLIPENKRAVTIRVNDVIG 134

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200
           V G + P + VD++      +   + + VL  I+V+A+D    S E + ++    TLE+T
Sbjct: 135 VAGFLLPGNKVDILNTVKYGKNSASTSTVLKEIKVLAVDQTARSKENKPVIVRAVTLEVT 194

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           P QA+ L++AQS   + L LR     NP   E
Sbjct: 195 PRQAEKLLSAQSRGNIQLTLR-----NPHEEE 221


>gi|134299960|ref|YP_001113456.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134052660|gb|ABO50631.1| SAF domain protein [Desulfotomaculum reducens MI-1]
          Length = 234

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 6/143 (4%)

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGN--GGLSSLLPKGKRAATMDISISSAVGGMI 146
           A Q++ G + R  +   +PI L ++    N  G L+ L+P+G+RA T+ +   S V G++
Sbjct: 76  APQDVVGKITRSELYPEEPIMLNRIYKDSNTDGDLALLIPEGQRALTVAVDDVSGVAGLL 135

Query: 147 KPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAIDHNIDSD---ERVLVGSTATLELTPM 202
           +P DHVD+++      E+    T++L NI+V+A+  ++D+    E+     T TL + P 
Sbjct: 136 QPGDHVDIIVTFDYEGEQTSLSTLLLQNIQVLAVGQSLDNTPKAEKKTSSQTVTLSVQPG 195

Query: 203 QAKALVAAQSVAKLSLVLRSIAD 225
           QA  L  A     + L+LRS  D
Sbjct: 196 QATPLTLATERGSIRLMLRSPKD 218


>gi|308050060|ref|YP_003913626.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799]
 gi|307632250|gb|ADN76552.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799]
          Length = 288

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 86/141 (60%), Gaps = 7/141 (4%)

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149
           +++ G++ + P+++GD +  +KLV +G G  L+SL+    RA T+ ++    V G + P 
Sbjct: 77  EQVVGMVAKFPLVEGDFLSRQKLVPKGEGSVLASLIAPNMRAVTIRVNDVVGVAGFLLPG 136

Query: 150 DHVDVVMV---RSLSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQA 204
           + VDV++    R  ++      VVLSN++V+A+D   N DS++ VLV +  TLE+T  QA
Sbjct: 137 NRVDVLVTLAKRRSADETAQTEVVLSNLKVLAVDQRANQDSNQPVLVRAV-TLEVTLEQA 195

Query: 205 KALVAAQSVAKLSLVLRSIAD 225
           + L++A+S   + L LR+  D
Sbjct: 196 EELMSARSRGNIQLALRNPND 216


>gi|116748929|ref|YP_845616.1| SAF domain-containing protein [Syntrophobacter fumaroxidans MPOB]
 gi|116697993|gb|ABK17181.1| SAF domain [Syntrophobacter fumaroxidans MPOB]
          Length = 292

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 12/200 (6%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
           VQT  V  +     + V ++  DL  G  +T  +++   +P +++  G+  D  +     
Sbjct: 34  VQTTVVTEKAEPGGVQVALASADLPWGTKLTREMVKMAEYPPKHLPAGYFSDPAK----- 88

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
            ++G ++  P+ +G+ +   KL       GG+S+++  GKRA  +       + G I+P 
Sbjct: 89  -IEGRVLITPVKQGEQLLESKLAPLSVTTGGVSAVVSVGKRAIAVAGDKVIGLAGFIQPG 147

Query: 150 DHVDV-VMVRSLSERKPTVT-VVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAK 205
           + VDV V +R   E+ P+ + VVL N++V+A    ID       G     TLE+TP +A+
Sbjct: 148 NFVDVLVTIRDTQEKTPSTSKVVLENVKVLATGTVIDKKAGTEPGPVDVFTLEVTPEEAE 207

Query: 206 ALVAAQSVAKLSLVLRSIAD 225
            L  A S+ KL   LR++ D
Sbjct: 208 RLAFAASLGKLHFALRNVTD 227


>gi|255262747|ref|ZP_05342089.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62]
 gi|255105082|gb|EET47756.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62]
          Length = 282

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 9/187 (4%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPIL 103
           +++  +K  L  G ++T   +  + +PE ++  G    + +  PN  ++L  VL   PI 
Sbjct: 48  VDIFAAKNPLVYGQMLTIEDVHHIRYPEASLPPGAFRTIEELFPNGDEKLRVVLR--PIE 105

Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--VRSL 160
             + I   K+   G + GL+  L +G RA  + + +SS V G ++P D VDV    V ++
Sbjct: 106 PNEVILPVKVTSPGEDAGLTQRLAQGMRAFAIRVDVSSGVSGFVRPGDRVDVYWSGVANV 165

Query: 161 SERKPTVT-VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
            +R+  +T ++ S++++IAID + D ++    +  T T+E++ ++  AL  AQ+   LSL
Sbjct: 166 GQRRQDLTRLIQSSVKIIAIDQSADGNQSEARIARTVTVEVSQVEVAALAQAQATGNLSL 225

Query: 219 VLRSIAD 225
            L    D
Sbjct: 226 ALVGYGD 232


>gi|259417281|ref|ZP_05741200.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B]
 gi|259346187|gb|EEW58001.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B]
          Length = 267

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 9/184 (4%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILK 104
           +NV ++   L  G  +T   +  VA+PE  + +G F ++     +    D   V   + K
Sbjct: 28  VNVFVANKTLTYGEELTKENVRAVAWPENALPEGIFSEESDLFPSDSPKDARYVLRTMEK 87

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VR 158
            +P+   K+   G + G++S L KG RA  + + ++S V G ++P D VDV        R
Sbjct: 88  NEPLLAVKITAPGEDAGITSRLEKGMRAFAIRVDVASGVSGFLRPGDRVDVYWSGQPPAR 147

Query: 159 SLSERKPTVT-VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           S  ER   VT ++ SNI +IA+D     D    ++  T T++  P +   L  AQS  +L
Sbjct: 148 SGQERSGEVTRLIQSNIELIAVDQMSGGDFSNAIIARTVTVKAQPEEVARLAQAQSTGRL 207

Query: 217 SLVL 220
           SL L
Sbjct: 208 SLAL 211


>gi|197106488|ref|YP_002131865.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
 gi|196479908|gb|ACG79436.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
          Length = 310

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 28/252 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M++  ++ +  S V  L A ++A + V P     +       A  + V+++  ++  G  
Sbjct: 1   MRVVTIVSLAASAVLGLGALVVA-KTVLPGAGAAKGAAVVQEAPGVPVVVAAREIKYGDK 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQ---------PNAMQELDGVLVRVPILKGDPIRLE 111
           + P +L  V  P   V  G    V Q         P A+  L     R P+L   P ++ 
Sbjct: 60  LVPGMLTIVNAPAGLVPQGAFQTVDQVLSADKGGPPVALTRL---AAREPVL---PTKIS 113

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TV 167
               R    +S+ + +G RA T+ +  SS VGG   P D VDVV++R L+   P      
Sbjct: 114 GPGSRPT--VSAEVGEGMRAYTLKVDASSGVGGHALPGDRVDVVLLRDLTPSGPDRNFIS 171

Query: 168 TVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR----- 221
            VV+ N RV+ +D N D + E+    STATLE++  +++ L  A ++  LSL LR     
Sbjct: 172 YVVVQNARVLGVDLNADPTSEKPATPSTATLEVSVEESQKLAIAATLGTLSLALRRSGEA 231

Query: 222 SIADLNPSSSED 233
            IAD  P  + D
Sbjct: 232 EIADAGPLRTGD 243


>gi|254477805|ref|ZP_05091191.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11]
 gi|214032048|gb|EEB72883.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11]
          Length = 286

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 12/186 (6%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI---DDVHQPNAMQELDGVLVRVP 101
            ++V I+   L  G  +TP  +  V +P+  + +G     +++  P A +E   V++R  
Sbjct: 47  LVDVFIANEPLKYGERLTPERVRAVRWPQNAIPEGAFLTAEELFPPQA-EEKPRVVLRT- 104

Query: 102 ILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
           + K + I   K+   G + GL+S L +G RA  + + +SS V G ++P D VDV     +
Sbjct: 105 MEKDEAILAIKVTKPGEDAGLTSRLERGMRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRV 164

Query: 161 ----SERKPTVT-VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVA 214
               SER    T ++ +NI +IAID +  SD +   +  T T+   P Q  AL  AQS  
Sbjct: 165 DDQTSERSGDFTRLIQANIELIAIDQSAGSDLDGATIARTVTVSARPEQVAALAQAQSTG 224

Query: 215 KLSLVL 220
           +L+L L
Sbjct: 225 RLTLSL 230


>gi|323491531|ref|ZP_08096710.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
 gi|323314107|gb|EGA67192.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
          Length = 247

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 7/149 (4%)

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGG 144
           Q  A ++L G +V   +  G+ + + +L ++G G  L+SL+P+ KRA T+ ++    V G
Sbjct: 78  QFTASEDLIGQVVASNVYPGEILHISRLANQGEGSTLASLIPENKRAVTIRVNDVIGVAG 137

Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQ 203
            + P + VDV+      +       VL  I+V+A+D    + E + ++    TLE++P Q
Sbjct: 138 FLLPGNKVDVLNTIKYGKNSANTVTVLKEIKVLAVDQTARTKENKPIIVRAVTLEVSPRQ 197

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           A+ L++AQS   + L LR     NP   E
Sbjct: 198 AEKLLSAQSRGDIQLALR-----NPHEEE 221


>gi|283769331|ref|ZP_06342230.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219]
 gi|283103988|gb|EFC05372.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219]
          Length = 228

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 16/187 (8%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V ++  ++     +T ++LE+   P   V +G   +        EL G + +V ILK   
Sbjct: 37  VYVASKNIKANQQITEDMLEYKKVPGNLVVEGAAKN------KDELLGKMAKVDILKNSV 90

Query: 108 IRLEKLVDRG----NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           I  E +   G    NGGL+ ++ KGKRA +  +  S+ +  +++  D VD+++ R+    
Sbjct: 91  ISKENVYKEGEPEKNGGLTYVIAKGKRAISFPVEYSTGISSLLRGGDRVDIILTRAKDSN 150

Query: 164 KPTVTVVLSNIRVIAI--DHNIDSDERVLVG---STATLELTPMQAKALVAAQSVAKLSL 218
             + T +LSN++++A+  D+++  ++    G   ST T+EL+P     L+       LSL
Sbjct: 151 FVSKT-ILSNVKILALGNDYSVGVNKSGSEGKSYSTVTVELSPEDCVKLMNGSKAGTLSL 209

Query: 219 VLRSIAD 225
            LR+  D
Sbjct: 210 SLRTPGD 216


>gi|323702114|ref|ZP_08113782.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM
           574]
 gi|323532996|gb|EGB22867.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM
           574]
          Length = 234

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 14/188 (7%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           F  V++ K  +    ++T  +++    P E +  G   D       +++ G + R  +  
Sbjct: 38  FKQVVVPKQTIGPNTMLTAQMVKVKDIPVEMIQPGTAMDT------KDVVGKVTRSDLYP 91

Query: 105 GDPIRLEKL-VDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
            +PI L +L  D+   G L+  +P G+RA T+++   S V GM+KP DHVD+++      
Sbjct: 92  EEPILLSRLHQDKDSTGELALAIPTGQRALTVEVDAVSGVAGMLKPGDHVDILVTFDYEV 151

Query: 163 RKPTVT-VVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
            K T+T ++L NI+V+A+  ++ S    D++V    T TL +TP QA  L       K+ 
Sbjct: 152 EKTTLTSLLLQNIKVLAVGQSLVSAQKGDQKVNT-QTVTLAVTPEQAPPLTLGSERGKIR 210

Query: 218 LVLRSIAD 225
           L+LRS  D
Sbjct: 211 LMLRSPKD 218


>gi|212635454|ref|YP_002311979.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3]
 gi|212556938|gb|ACJ29392.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3]
          Length = 267

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 18/223 (8%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L+ +V+S VF + A  +A   +  +    +EVI+        V+    ++ +G ++    
Sbjct: 6   LLFVVLSLVFGVTAVYLAQNWLKSN--TKDEVISTTGT----VITMATEVPLGAILQRKH 59

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSL 124
           L     PE  +  G + D      + E +G +V+  +  G+ +R E+L  +G G  L+SL
Sbjct: 60  LSLTTLPESLIPKGAVLD------LAEAEGKVVKQKLYAGEVLRAERLTAKGEGSTLASL 113

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           +    RA T+ ++    V G + P + VD++ +   S  K    +VLSN++++AID    
Sbjct: 114 ITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSSGLK--TDIVLSNVKILAIDQRAS 171

Query: 185 SDER--VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +DE   VLV +  TLEL+  QA+ L+ A+S   L L LR+  D
Sbjct: 172 NDENKPVLVRA-VTLELSLDQAEILMIAKSRGSLQLALRNPND 213


>gi|21673268|ref|NP_661333.1| hypothetical protein CT0429 [Chlorobium tepidum TLS]
 gi|21646356|gb|AAM71675.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 278

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 2/133 (1%)

Query: 95  GVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           G +  VP++ G+P+   KL   G  GGLSS++P GKRA ++ ++    V G   P  +VD
Sbjct: 76  GRIALVPMIPGEPVLPGKLAPIGATGGLSSIIPAGKRAISVRVNDVVGVAGFALPGSYVD 135

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHN-IDSDERVLVGSTATLELTPMQAKALVAAQS 212
           +++       +P   +VLS ++V+A++ + +   ++  V +  TLEL+P +++ L  A++
Sbjct: 136 ILVSGRDVSGQPFSRIVLSKVKVLAVEQDTVAEKDKPKVVNAVTLELSPQESEKLDLARN 195

Query: 213 VAKLSLVLRSIAD 225
           +  LSLVLR+  D
Sbjct: 196 IGALSLVLRNELD 208


>gi|77919344|ref|YP_357159.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380]
 gi|77545427|gb|ABA88989.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380]
          Length = 272

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 17/227 (7%)

Query: 7   MGIVVSGVFALVAGIIAMRLVS---PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            G +++   A++ G+IA+ LV+      V  E            ++++  D+ +G  +  
Sbjct: 4   YGTIIALALAVIFGVIAVILVNRWLSSKVSQEATTPRESIAMTEIVVAAADVNIGTRLDQ 63

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK---GDPIRLEKLVDRGNG- 119
            +L    +P+ +V  G  +D+ Q         V+ RV + K   G PI   +L    +G 
Sbjct: 64  TLLAMAQWPKASVPKGAFEDIEQ---------VVGRVSVSKMVTGTPILAAELAAPNSGA 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
           GL +L+  G RA  + ++    VGG I PN  VD++ +   S+R       L  + V+AI
Sbjct: 115 GLVALIKPGMRAMAIKVNEVVGVGGFILPNTFVDIISLDERSKRTKVADTFLHKVEVLAI 174

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
                 +E +  V  T TLELTP  A+ LV       + LVLR+  D
Sbjct: 175 AQETFIEEGKPKVVRTVTLELTPEDAEKLVEKTHEGPIQLVLRNPLD 221


>gi|118581114|ref|YP_902364.1| SAF domain-containing protein [Pelobacter propionicus DSM 2379]
 gi|118503824|gb|ABL00307.1| SAF domain protein [Pelobacter propionicus DSM 2379]
          Length = 291

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K   ++++  D+ VG  +    L+ +A+P  ++  G   D         +D + +R PI 
Sbjct: 40  KGKGIVVASADIPVGSKLNTTHLKMMAWPATSIPPGSFTDTKA-----LIDRISIR-PIG 93

Query: 104 KGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR- 158
            G+P+   KL+ R    G G ++ ++P G RA T+ ++  + V G + P++ VDVV+   
Sbjct: 94  PGEPLTEAKLMPRDGAPGAGIMTYIIPDGHRAVTVAVNEVAGVAGFLSPHNKVDVVLTTI 153

Query: 159 SLSERKPTVT---VVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVA 214
                 P  T   +VL N+ ++A     +  D + +V  T T++LTP  A+ LV A S  
Sbjct: 154 PPGSNDPNATISKIVLQNVPILATGQITEQKDGKPVVVPTVTIDLTPEDAEKLVVASSKG 213

Query: 215 KLSLVLRSIAD 225
            L ++LR I D
Sbjct: 214 SLQMLLRGIRD 224


>gi|39936739|ref|NP_949015.1| hypothetical protein RPA3677 [Rhodopseudomonas palustris CGA009]
 gi|192292565|ref|YP_001993170.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
 gi|39650595|emb|CAE29118.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192286314|gb|ACF02695.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
          Length = 193

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID-DVHQPNAMQELDGVLVRVP 101
           A+ + VL++K D+ +G  VTP  L+W  +P       FI  D+H P A  ++ G + R P
Sbjct: 44  AQTVEVLVAKNDIPLGQAVTPGDLQWQTWPAATASSNFIRRDLH-PGATTDIGGSITRAP 102

Query: 102 ILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGG 144
            + G+PIR +KLV   G+  + + +P G RA + + ++     G
Sbjct: 103 FIAGEPIRRQKLVQADGSSSVPAFVPTGMRAISTETALEPGATG 146


>gi|159043679|ref|YP_001532473.1| SAF domain-containing protein [Dinoroseobacter shibae DFL 12]
 gi|157911439|gb|ABV92872.1| SAF domain protein [Dinoroseobacter shibae DFL 12]
          Length = 280

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 106 DPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           +P+   K+ + G + G+SS L KG RA  + ++++S V G ++P D VDV    S S+ +
Sbjct: 108 EPVLAVKVTEPGQDAGVSSRLGKGMRAFAISVTVTSGVSGFLRPGDRVDVYWSGS-SKGQ 166

Query: 165 PTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
               ++ S++++I ID N D D     +  T T+E TP Q   L  AQ    LSL L   
Sbjct: 167 DVTKLIQSSMQIIGIDQNADMDRTAPTIARTVTVEATPQQVAGLAQAQRTGSLSLSLVGA 226

Query: 224 AD 225
           AD
Sbjct: 227 AD 228


>gi|37680845|ref|NP_935454.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
 gi|37199594|dbj|BAC95425.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
          Length = 248

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141
           ++ Q    +EL G +V   I  G+ I  ++L   G G  L++L+P+ KRA T+ ++    
Sbjct: 75  ELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRVNDVIG 134

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200
           V G + P + VDV+   S S+   +   VL +I+V+A+D    + E + ++    TLE+T
Sbjct: 135 VAGFLLPGNRVDVLNTVSYSKGSASTKTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVT 194

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           P QA+ L++A+S  ++ L LR     NP   E+
Sbjct: 195 PDQAEKLLSAKSKGEIQLTLR-----NPHEPEE 222


>gi|89899602|ref|YP_522073.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118]
 gi|89344339|gb|ABD68542.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118]
          Length = 286

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 16/188 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            + ++  D+ +G  ++P ++    +P  +   G   +  +      L+G +V V + +G+
Sbjct: 36  RIAVANTDIELGGRISPEMIRMADWPLGSTPTGAYKEAAK------LEGRVVLVSMQRGE 89

Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--- 162
           P+   +L   G  GGLS+++P+GKRA T+ ++    V G   P   VD VMV +  E   
Sbjct: 90  PLIEARLAPIGTKGGLSAVVPQGKRAMTVRVNDVVGVAGFALPGTFVD-VMVNTQDEGGQ 148

Query: 163 ---RKPTVT-VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLS 217
              R  +V+ +VL  I V+A+    D D  +  V +  TLE+TP  A+ L  A+SV  LS
Sbjct: 149 RNDRDRSVSKIVLERILVLAVAQEADRDSTKPRVVNAVTLEVTPRDAEMLDLARSVGTLS 208

Query: 218 LVLRSIAD 225
           LVLR+  D
Sbjct: 209 LVLRNQTD 216


>gi|260431083|ref|ZP_05785054.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414911|gb|EEX08170.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 293

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           + VL++   L  G  +T   +  V +PE  V +G   ++         +   V   + K 
Sbjct: 56  VGVLVANRPLKYGERLTEEDIRVVDWPENAVPEGAFTEMAALFPETGANERFVLRAMEKD 115

Query: 106 DPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--- 161
           + I   K+   G   GL+S L KG RA  + + ++S V G ++P D VDV    SLS   
Sbjct: 116 EAIMEVKVTKPGELAGLTSRLEKGMRAFAISVDVASGVSGFLRPGDVVDVYWTGSLSGAV 175

Query: 162 --ERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
              R     ++ +NI +IA+D +  SD     +  T T+  TP Q  AL  AQ+  +LSL
Sbjct: 176 EGARGEITRLIQTNIELIAVDQSAGSDVTGTTIARTVTVAATPEQVAALAQAQNTGRLSL 235

Query: 219 VLRSIADLNPSSSEDSD 235
            L  + D   +S+ + D
Sbjct: 236 ALVGVHDETVASAIEVD 252


>gi|120602160|ref|YP_966560.1| SAF domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120562389|gb|ABM28133.1| SAF domain [Desulfovibrio vulgaris DP4]
          Length = 272

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 117/244 (47%), Gaps = 18/244 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ T ++ ++ + V ALVAGI+  R V  + V  +   T+ P   + +++S  D+  G  
Sbjct: 1   MRRTAVIQVIAALVLALVAGILVFRFVQVNRVAQQ---TQQPPGVV-LVVSAVDMEKGAK 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGN 118
           +  + L+   F   +   G   D       + L G ++  P+  G+ I   +L+  D  +
Sbjct: 57  IRADQLKTSTFLSASAPPGGFTDA------KSLVGRVLATPVTTGEVITETRLLPADATS 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIR 175
           GG+S+++  G RA  +  +    + G I+P + VD+++     +  + K    V+L+ I+
Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170

Query: 176 VIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+A    +  +      S     TLE+TP QA+ L  A S  +L   LR+ AD  P  + 
Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230

Query: 233 DSDV 236
            +DV
Sbjct: 231 GTDV 234


>gi|323499922|ref|ZP_08104881.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
 gi|323315163|gb|EGA68215.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
          Length = 247

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 7/149 (4%)

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGG 144
           Q    +EL G +V   I +G+ +   +L   G G  L+SL+P+ KRA T+ ++    V G
Sbjct: 78  QFTKAEELIGQVVATTIYQGEVVHQNRLAAPGEGSTLASLIPENKRAVTIRVNDVIGVAG 137

Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQ 203
            + P + VDV+     S        VL +I+V+A+D    + E + ++    TLE++P  
Sbjct: 138 FLLPGNRVDVLNTIKYSSTYANTVTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVSPKD 197

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           A+ L+ A+S  ++ L LR     NP   E
Sbjct: 198 AEKLLTARSKGEIQLTLR-----NPHEEE 221


>gi|83954513|ref|ZP_00963224.1| CpaB family protein [Sulfitobacter sp. NAS-14.1]
 gi|83840797|gb|EAP79968.1| CpaB family protein [Sulfitobacter sp. NAS-14.1]
          Length = 287

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQ-PNAMQELDGVLVRVPIL 103
           + V ++ G L  G  +T   +  V +PE+ + +G FI++    P    +L  VL    + 
Sbjct: 48  VGVYVANGPLKYGQRLTREDVRQVKWPEDAIPEGTFIEEAALFPENSDDLRVVLR--AME 105

Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----R 158
           K + I   K+ + G + GL+S L +G RA  + + +SS V G ++P D VDV       R
Sbjct: 106 KDEAIMAAKVTEPGADTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINR 165

Query: 159 SLSERKPT---VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVA 214
             ++R  T     ++ + +++IAID +   +     + +T T+ + P Q  AL  AQS  
Sbjct: 166 GGNDRADTGDVTKLIEAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTG 225

Query: 215 KLSLVL 220
            LSL L
Sbjct: 226 DLSLSL 231


>gi|225181998|ref|ZP_03735430.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
 gi|225167283|gb|EEG76102.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
          Length = 229

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 11/202 (5%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89
           H++   E  +++ A    +L+++ ++     ++ ++      P++ +    I +      
Sbjct: 23  HYLNEMERQSKSAANLTTILVAREEIPARTRLSASMFTTAEVPQDAIHGDAIRET----- 77

Query: 90  MQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
             ELDG   R  ++ G+ +   +LV ++   GLS  +  G RA T+ ++  S V G I P
Sbjct: 78  -SELDGAYARERLVAGEQVLSARLVFEQSETGLSYKVSDGHRAVTVPVNNVSGVAGYILP 136

Query: 149 NDHVDVVMVRSLSERKPTVT-VVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQA-K 205
            D+VD ++    +E + TVT VV S I+V+A   + ++ D   L+  T TL+ TP  A  
Sbjct: 137 GDYVDAIVTIESTEDEDTVTKVVESKIKVLASGQYTVEQDREQLIVETVTLD-TPADAVT 195

Query: 206 ALVAAQSVAKLSLVLRSIADLN 227
           A++ A     L LVLR + + N
Sbjct: 196 AIIQASERGSLRLVLRPVEESN 217


>gi|27365105|ref|NP_760633.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
 gi|27361251|gb|AAO10160.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
          Length = 248

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 7/153 (4%)

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141
           ++ Q    +EL G +V   I  G+ I  ++L   G G  L++L+P+ KRA T+ ++    
Sbjct: 75  ELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRVNDVIG 134

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200
           V G + P + VDV+   S S+       VL +I+V+A+D    + E + ++    TLE+T
Sbjct: 135 VAGFLLPGNRVDVLNTVSYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVT 194

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           P QA+ L++A+S  ++ L LR     NP   E+
Sbjct: 195 PDQAEKLLSAKSKGEIQLTLR-----NPHEPEE 222


>gi|320155488|ref|YP_004187867.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O]
 gi|319930800|gb|ADV85664.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O]
          Length = 248

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 7/153 (4%)

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141
           ++ Q    +EL G +V   I  G+ I  ++L   G G  L++L+P+ KRA T+ ++    
Sbjct: 75  ELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRVNDVIG 134

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200
           V G + P + VDV+   S S+       VL +I+V+A+D    + E + ++    TLE+T
Sbjct: 135 VAGFLLPGNRVDVLNTISYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVT 194

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           P QA+ L++A+S  ++ L LR     NP   E+
Sbjct: 195 PDQAEKLLSAKSKGEIQLTLR-----NPHEPEE 222


>gi|220922531|ref|YP_002497833.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
 gi|219947138|gb|ACL57530.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
          Length = 307

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIA 178
           LS+L+ +G RA  + +     V G I PND VDVV+ R     E K    ++L N++V+A
Sbjct: 114 LSTLIEEGMRAVAVRVDDVRGVAGFILPNDRVDVVLTRDEEARESKGFADILLQNVKVLA 173

Query: 179 IDH-NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           ID    D  ++  V    TLEL P+QA+ ++ AQ V +LSL+L
Sbjct: 174 IDQLANDHADKPTVARAVTLELNPVQAQKIILAQGVGRLSLIL 216


>gi|323700358|ref|ZP_08112270.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. ND132]
 gi|323460290|gb|EGB16155.1| Flp pilus assembly protein CpaB [Desulfovibrio desulfuricans ND132]
          Length = 273

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 16/231 (6%)

Query: 2   KLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           K TR L+ I +S   A++AG+I  +  +      +   T      + V+++K DL  G+ 
Sbjct: 3   KSTRALVQITLSLFLAVIAGVIIFKWTNGVK---QAAPTAVVENTVPVVVAKTDLGRGVK 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +T ++LE   F +++   G   +V Q      ++G ++   +  GD +   KL D+    
Sbjct: 60  LTEDMLEIRKFTQDSRPSGAFAEVKQ------VEGRVLNQTVGMGDALTPLKLADKSIMG 113

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVI 177
           GG+S+L+  GKRA  +  +    + G ++P D VDV++  ++    KP   +VL  I+VI
Sbjct: 114 GGVSALITPGKRAMAVKGNEVMGLSGFVRPGDRVDVIVSLTVGRNEKPVTKLVLEQIKVI 173

Query: 178 AIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           A    +   + + +V      TLELTP +++ L  A +   L   LR+  D
Sbjct: 174 ATGTQLTPPNEEGKVASVGVYTLELTPAESERLALASTQGTLHFALRNEQD 224


>gi|294012432|ref|YP_003545892.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
 gi|292675762|dbj|BAI97280.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
          Length = 338

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 15/191 (7%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF-IDDVHQPNAMQELDGVLVRVPILKG 105
           +VL++   L VG ++      +  +P++ V   + I     P   Q+L G ++R  I  G
Sbjct: 48  HVLVATKALPVGTILDAESFRFQPWPKDLVEQAYYIKGQADP---QKLVGSVIRTAISAG 104

Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--- 161
            P+ L  ++  G  G L++ L  G RA T+ +S  ++V G + P D VD+V+ +S+S   
Sbjct: 105 QPMTLGSVIKPGERGFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLVLTQSVSGGG 164

Query: 162 ERKP--TVTVVLSNIRVIAIDHNIDS---DERVLVG--STATLELTPMQAKALVAAQSVA 214
           E +P      +L N+RV+A D  +D+   D + +V   S  T+E+TP  A+ +  AQ++ 
Sbjct: 165 EGEPLKVSETILRNLRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224

Query: 215 KLSLVLRSIAD 225
            LSL LRS+AD
Sbjct: 225 SLSLSLRSLAD 235


>gi|90406751|ref|ZP_01214944.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3]
 gi|90312204|gb|EAS40296.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3]
          Length = 286

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 39/274 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIA--MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           M   RLM      VF  + G++   M + SP    T   + +   K + +L+S  ++  G
Sbjct: 1   MTAKRLMYF---SVFISLIGLLGLFMSVSSP----TAPALIKEENKTLTILVSSQEIKSG 53

Query: 59  MVVTPNILEWVAFPEENVFDG--FIDDVHQPNAMQELDGVLVRVP----ILKGDPIRLEK 112
            + + +I  W   PE ++ +   +I  +   N   +   V   +P    + + D + LE 
Sbjct: 54  RLYSASIFAWKKVPESDLAEQIDYIQKIDFNNKAYKKSIVTGDLPAGHIMSQSDFLTLED 113

Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------R 163
                   LS LL  G RA ++ +   +A  G+I+P DHVDV+++ S  +         R
Sbjct: 114 -----GAFLSVLLRPGYRAVSVGVDHITANSGLIRPGDHVDVLLLASKEKELRSTGNETR 168

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSV 213
              V  ++ N+RV+A++  +  D            +   S  TLE+ P QA  ++ A  +
Sbjct: 169 SLYVKTIVQNVRVLALNDALQIDRYQEEKKRNKGMLPEKSAVTLEVLPAQANTVILANQL 228

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
             LS++LR+ +D +  ++   D+ D+  E K++Q
Sbjct: 229 GTLSMLLRNSSDNSILANTQVDIGDIFPEIKQVQ 262


>gi|303248301|ref|ZP_07334563.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ]
 gi|302490326|gb|EFL50238.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ]
          Length = 304

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 24/239 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS----PHHVQTEEVITENPAKFINVLISKGDLA 56
           MK   +  ++++ + A+ AG++ +R +     P   Q  +V     AK ++VL++   + 
Sbjct: 1   MKSKAIPHMILAVILAVAAGVLTIRWLGSVRGPGQAQRPKVE----AKKVDVLVAARAIP 56

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G  +   +L    +  E V  G +       A+ E +G +    I K DPI  +KL+ +
Sbjct: 57  KGARLDAAMLRLKPYEAEAVPGGAL------RAVAEAEGRVAARDISKDDPITPDKLMAK 110

Query: 117 G--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLS 172
           G   GGL + +  GKRA T+  +     GG++ P   VDVV+   R   + +    V+L 
Sbjct: 111 GVTRGGLDAAVAPGKRAVTVKGTKVMGSGGLVTPGSRVDVVVTYSRPGKQEEKVSKVILE 170

Query: 173 NIRVIA----IDHNIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           NI V+A    ++  I  D R  + ST   TL +TP +A+ L  A  +  + + LR   D
Sbjct: 171 NIPVLATGTELEPRIGKDGREELASTDSFTLMVTPEEAERLALAADLGSMHMALRKPGD 229


>gi|114764945|ref|ZP_01444118.1| CpaB family protein [Pelagibaca bermudensis HTCC2601]
 gi|114542657|gb|EAU45681.1| CpaB family protein [Roseovarius sp. HTCC2601]
          Length = 286

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 34/192 (17%)

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP------------NAMQELDGVL-VRVP 101
           +A G ++TP+ ++   +P E + +G   +  +P            NAM + D VL  RV 
Sbjct: 57  IARGEILTPDAVKLAPWPMEIMPEGIFTE-KRPLFVEGDAPRVVVNAMDKFDAVLDGRVS 115

Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
              GD             GL+S L +G+RA  + + +++ V G ++P D VDV     + 
Sbjct: 116 EPGGD------------AGLTSRLERGERAFAIKVDVATGVSGFLRPGDRVDVYWTGRVP 163

Query: 162 ERKPTV------TVVLSNIRVIAIDHNIDSDER--VLVGSTATLELTPMQAKALVAAQSV 213
              P +       ++ + IR+IA+D   +S+      +  T T+ +TP Q   L  AQS 
Sbjct: 164 GNDPNLPQGDVTKLIETGIRLIAVDQTAESETANPTTIARTVTVAITPQQVAGLAQAQST 223

Query: 214 AKLSLVLRSIAD 225
            +LSL L +  D
Sbjct: 224 GRLSLSLMAAND 235


>gi|294139869|ref|YP_003555847.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12]
 gi|293326338|dbj|BAJ01069.1| Flp pilus assembly protein CpaB, putative [Shewanella violacea
           DSS12]
          Length = 288

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 41/276 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV--SPH---HVQTEEVITENPAKFINVLISKGDL 55
           M + RLM      VF  +AG+I + L   +P    +++TE V  E       +L++K  +
Sbjct: 1   MTVKRLMYF---SVFISLAGLIGLYLSISAPQKQINIKTENVRHE-------ILVAKQLI 50

Query: 56  AVGMVVTPNILEWVAFPEENVFDGFID--DVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
             G   + ++ EW A  E+ +    +D  D  + + ++  D VLV      G  + L   
Sbjct: 51  KSGQRFSASLFEWQALNEDQL-TNLVDYIDRDKFDILKFNDSVLVS-SFTAGHIMSLSDF 108

Query: 114 VDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------ 166
           +    GG LS  L  G RA ++ +   +A  G++ P D VDV+++ S  +   T      
Sbjct: 109 LKPEEGGFLSVSLRPGYRAVSVPVDQVTANSGLVGPGDFVDVLLLASQEQELRTRGNDTQ 168

Query: 167 ---VTVVLSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSV 213
              V  +  N+RV+A +H +  ++ +             S  TLE+ P QA  ++ A  +
Sbjct: 169 SLYVKTIARNVRVLAFNHAVKVEQYIAAQKEYKGFIPDDSAVTLEVLPKQANRIILANQL 228

Query: 214 AKLSLVLRSIAD-LNPSSSEDS-DVWDVQEEGKEIQ 247
             L+LVLRS  D ++ ++S+D  ++ D+  + K +Q
Sbjct: 229 GILTLVLRSNNDSVDEANSQDQINIADIFPDIKRVQ 264


>gi|307293449|ref|ZP_07573295.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
 gi|306881515|gb|EFN12731.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
          Length = 338

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 13/190 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL++   L VG ++      +  +P+E V   +   +   +  Q+L G ++R  I  G 
Sbjct: 48  HVLVATKALPVGTILDAESFRFQPWPKELVEQAYY--LKGQSDPQKLVGSVIRTAISAGQ 105

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161
           P+ L  ++  G  G L++ L  G RA T+ +S  ++V G + P D VD+++ +S+S    
Sbjct: 106 PMTLGSVIKPGERGFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLMLTQSVSGGGD 165

Query: 162 -ERKPTVTVVLSNIRVIAIDHNIDS---DERVLVG--STATLELTPMQAKALVAAQSVAK 215
            E       +L N+RV+A D  +D+   D + +V   S  T+E+TP  A+ +  AQ++  
Sbjct: 166 GEPLKVSETILRNLRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIGS 225

Query: 216 LSLVLRSIAD 225
           LSL LRS+AD
Sbjct: 226 LSLSLRSLAD 235


>gi|46580523|ref|YP_011331.1| hypothetical protein DVU2118 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449942|gb|AAS96591.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234262|gb|ADP87116.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris RCH1]
          Length = 272

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 18/244 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ T ++ ++ + V ALVAG++  R V  + V  +   T+ P   + ++++  D+  G  
Sbjct: 1   MRRTAVIQVIAALVLALVAGVLVFRFVQVNRVAQQ---TQQPPGVV-LVVAAVDMEKGAK 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGN 118
           +  + L+   F   +   G   D       + L G ++  P+  G+ I   +L+  D  +
Sbjct: 57  IRADQLKTSTFLSASAPPGGFTDA------KSLVGRVLATPVTTGEVITETRLLPADATS 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIR 175
           GG+S+++  G RA  +  +    + G I+P + VD+++     +  + K    V+L+ I+
Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170

Query: 176 VIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+A    +  +      S     TLE+TP QA+ L  A S  +L   LR+ AD  P  + 
Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230

Query: 233 DSDV 236
            +DV
Sbjct: 231 GTDV 234


>gi|227819322|ref|YP_002823293.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227338321|gb|ACP22540.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 352

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 40/221 (18%)

Query: 25  RLVSPHHVQTEE---VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           RLVS +  + EE   V+   P +F            G  V    L+ + +P E   +G  
Sbjct: 53  RLVSANAPKAEERTLVVAAKPMRF------------GDRVRSENLKAIPWPSEERPEGSF 100

Query: 82  --------DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAA 132
                   DD     AM+ +D          G+P+   K+   G    LS+ L +G +A 
Sbjct: 101 QTLEAVLGDDTEPRYAMEAID---------PGEPVLTSKITGTGERATLSAALDQGMKAV 151

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNID--SD 186
           ++ ++    V G ++P+D VDV++ R + ++    +  V V+L  ++V+A+D   D   D
Sbjct: 152 SIRVNDVLGVAGFVRPSDRVDVLLTRVVRQQNNSEQTYVDVLLQGVKVLAVDQTADERKD 211

Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           E  +V  T T E+T  +A+ L    S+  LSL LR+IA  N
Sbjct: 212 EPSIV-KTVTFEVTTDEAQRLTLGASIGTLSLTLRNIASSN 251


>gi|319788662|ref|YP_004148137.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1]
 gi|317467174|gb|ADV28906.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1]
          Length = 274

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 28/239 (11%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTE-EVITENPAKFINVLISKGDLAVGMVVTPN 64
            + I ++   AL+A  +A+     ++VQT     T++    + V +   D+  G ++ P 
Sbjct: 10  FLYIAIAVGMALLAAFVAV-----NYVQTTVAERTQDNRPMVEVAVPMDDMPQGAILQPG 64

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            L     P E        D   P    + +G ++R P+  G P+    LV   +   S L
Sbjct: 65  DLALRRIPAEYA----PADAVTPENHGQFEGRMLRSPVRGGAPLSASALVPLYDQ-FSRL 119

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSNIRVIAI 179
           +P+GK A T+ +  ++++ GMI P D +D++ ++   E     T      +L  +RV+A 
Sbjct: 120 IPRGKVAYTLSVDENNSISGMIAPGDLIDILFLKDKDESSGARTGALALPLLQQVRVLAT 179

Query: 180 DHNIDSDERVLVG----------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
              I   ERV             S+ TLEL   QAK L  A     L ++LR + D +P
Sbjct: 180 GTRI--GERVAPDGRPADDGQGFSSVTLELDHGQAKTLAVASEAGSLRVLLRELEDDSP 236


>gi|163733543|ref|ZP_02140986.1| pilus assembly domain protein [Roseobacter litoralis Och 149]
 gi|161393331|gb|EDQ17657.1| pilus assembly domain protein [Roseobacter litoralis Och 149]
          Length = 276

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH--QPNAMQELDGVLVRVPILKG 105
           V ++   L  G  + P  +  V +P   + DG   D+    P    E    L+  P+   
Sbjct: 44  VFVATRHLRYGDTLNPEDVRAVNWPTNAIPDGIFTDIAVLFPEGTDEPR--LIIRPMEPN 101

Query: 106 DPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLS 161
           + +   K+ + G   GL++ L KG RA  + + +++ V G ++P D VDV     V++ +
Sbjct: 102 EALLAVKITEPGEDIGLTTRLEKGMRAFAIRVDVATGVSGFLRPGDKVDVYWTGGVQTSN 161

Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            R+    ++ S +R+IA+D   D      +  T T+  +P Q  AL  AQS   LSL L 
Sbjct: 162 GREDVTKLIQSAVRLIAVDQTEDQMNGARIARTVTVAASPEQVAALAQAQSTGNLSLSLV 221

Query: 222 SIAD 225
              D
Sbjct: 222 GAGD 225


>gi|300856049|ref|YP_003781033.1| putative cell wall-binding protein [Clostridium ljungdahlii DSM
           13528]
 gi|300436164|gb|ADK15931.1| putative cell wall binding protein [Clostridium ljungdahlii DSM
           13528]
          Length = 321

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 93/201 (46%), Gaps = 24/201 (11%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           AK   +L++   ++ G ++   +++ +  P   +FD +I D  +      + G      I
Sbjct: 37  AKKTTILVAAETISPGTLIDKKMIKKIQVPYNPIFDNYIKDSSK------IAGKYTTETI 90

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
            K +   ++KL+++G   L+  +    RA ++ ++  S V G++KP D+VD+++  S   
Sbjct: 91  SKNEGFHIDKLLEKGGDELNLKIDNDYRAISISVTGDSGVSGLLKPKDYVDIIVYTSEKR 150

Query: 163 ------RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA------------TLELTPMQA 204
                 R     +VL NI+V+A+D  I  D +    + +            TL +     
Sbjct: 151 DGIKVVRPDEAKIVLQNIQVLAVDKQISRDNKESNSNKSSDNGKAPTNFLVTLSVKVSDL 210

Query: 205 KALVAAQSVAKLSLVLRSIAD 225
           + +V AQS+  + L LR + D
Sbjct: 211 EKVVLAQSIGSIKLALRPLKD 231


>gi|302037440|ref|YP_003797762.1| pilus assembly protein CpaB [Candidatus Nitrospira defluvii]
 gi|300605504|emb|CBK41837.1| Pilus assembly protein CpaB (modular protein) [Candidatus
           Nitrospira defluvii]
          Length = 403

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 26/206 (12%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           E  ++ I + ++  DLA G V+  + +  V FP + V +G         + + L G +V 
Sbjct: 41  EAKSRTIPIAVAAADLAWGAVLADDAVRMVPFPADTVPEGHF------ASAETLKGRVVI 94

Query: 100 VPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           + + + +PI   KL      +GG++++    KRA  + +    AVGG IKP D VDV+  
Sbjct: 95  MDVKQHEPILESKLAPATVTSGGVAAVTHPEKRAVAVKVDDVVAVGGFIKPGDRVDVLTT 154

Query: 158 --RSLSERKPTVTVVLSNIRVIAIDHNID-----------SDERVLVGSTATLELTPMQA 204
             R      P   VVL N+RV+A+  + +            + ++ V S  TLE+ P +A
Sbjct: 155 VRRPGKTDDPVTKVVLENVRVLAMGQDTERAAQTDKAAKNQETKLSVPSVMTLEVAPDEA 214

Query: 205 KALVAAQSVAKLSLVLRSIADLNPSS 230
           + L  A +  K+ L LR     NP S
Sbjct: 215 EKLALASTEGKVQLALR-----NPQS 235


>gi|83943940|ref|ZP_00956397.1| CpaB family protein [Sulfitobacter sp. EE-36]
 gi|83845187|gb|EAP83067.1| CpaB family protein [Sulfitobacter sp. EE-36]
          Length = 287

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQ-PNAMQELDGVLVRVPIL 103
           + V ++ G L  G  +T   +  V +PE  + +G FI++    P    +L  VL    + 
Sbjct: 48  VGVYVANGPLKYGQRLTREDVRQVNWPENAIPEGTFIEEAALFPENSDDLRVVLR--AME 105

Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----R 158
           K + I   K+ + G + GL+S L +G RA  + + +SS V G ++P D VDV       R
Sbjct: 106 KDEAIMAVKVTEPGADTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINR 165

Query: 159 SLSERKPT---VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVA 214
             ++R  T     ++ + +++IAID +   +     + +T T+ + P Q  AL  AQS  
Sbjct: 166 GGNDRADTGDVTKLIEAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTG 225

Query: 215 KLSLVL 220
            LSL L
Sbjct: 226 DLSLSL 231


>gi|78062907|ref|YP_372815.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
 gi|77970792|gb|ABB12171.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
          Length = 342

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 20/205 (9%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQE 92
           T  V TE       V ++  DL  G+++  N L W   P   V  G F++   QP A  +
Sbjct: 30  TPSVATET--DQARVRVAAADLPEGLLLRDNDLAWKRMPRAQVPAGAFVE--SQPGA--D 83

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L G L+R  +  G PIR+E ++  G    L++ L  G RA ++ +   S   G+I+P D 
Sbjct: 84  LKGALLRNHVGAGAPIRVENVIPAGAPDFLAAALQPGMRAISVPVDDVSGNAGLIQPGDF 143

Query: 152 VDVVMVRSL--SERKP---TVTVVLSNIRVIAIDHNID-------SDERVLVGSTATLEL 199
           VDV++ + +  S   P       V+   RV+A+            + +      T TLE+
Sbjct: 144 VDVLLTQQIGGSATSPGTFEAETVVRRARVLAVGSEFQRAKAPASAPDATARARTVTLEV 203

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIA 224
            P  A+ ++ A  +  LSL LRS A
Sbjct: 204 APRTAQVVLVATRLGSLSLALRSFA 228


>gi|99082185|ref|YP_614339.1| Flp pilus assembly CpaB [Ruegeria sp. TM1040]
 gi|99038465|gb|ABF65077.1| pilus assembly protein [Ruegeria sp. TM1040]
          Length = 287

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 13/227 (5%)

Query: 7   MGIVVSGVFALVAGIIAM---RLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVT 62
            G+V+    AL  G + M    + +  H   +E    + A   +NV ++   L  G  +T
Sbjct: 5   FGLVLIVGVALAGGAVMMAKNYIEAYQHALAQERSNRDAAVPTVNVFVANKTLTYGEELT 64

Query: 63  PNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGG 120
              +  VA+PE  + +G F ++     +    D   V   + K +P+   K+   G + G
Sbjct: 65  KESVRSVAWPENALPEGVFHEEAELFPSDSPKDARFVLRTMEKNEPLLAVKVTAPGEDAG 124

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VRSLSERKPTVT-VVLSNI 174
           ++S L KG RA  + + ++S V G ++P D VDV        R   E    VT ++ SNI
Sbjct: 125 ITSRLEKGMRAFAIRVDVASGVSGFLRPGDRVDVYWSGQPPARGGQELGGEVTRLIQSNI 184

Query: 175 RVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            +IA+D     D    ++  T T++  P +   L  AQ+  +LSL L
Sbjct: 185 ELIAVDQMSGGDFSSAIIARTVTVKAQPEEVARLAQAQATGRLSLAL 231


>gi|260426594|ref|ZP_05780573.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45]
 gi|260421086|gb|EEX14337.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45]
          Length = 286

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 91/186 (48%), Gaps = 9/186 (4%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           + ++   +  G V+    ++   +P+E + +G  D+ + P A  E   V+ R  + K + 
Sbjct: 50  IYVTTQAVPTGEVLRKEYVKLAPWPQEILPEGVFDETNPPFADGEAPRVVTRA-MDKFEA 108

Query: 108 IRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----- 161
           +   ++ + G + GL++ L +G+RA  + + ++S V G ++P D VDV     +      
Sbjct: 109 VLTTRISEPGGDAGLTTRLERGQRAFAIKVDVTSGVSGFLRPGDRVDVYWTGKMPGTDAN 168

Query: 162 -ERKPTVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
             R     ++ + +++IAID   +  +    +  T T+ ++P Q   L  AQS  +LSL 
Sbjct: 169 LPRGEVTKLIETAVKLIAIDQTAEVENSDATIARTVTVAVSPQQVAGLAQAQSTGRLSLS 228

Query: 220 LRSIAD 225
           L +  D
Sbjct: 229 LLAAND 234


>gi|239814525|ref|YP_002943435.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
 gi|239801102|gb|ACS18169.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
          Length = 280

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 15/187 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  D+ +G  V P +L  V +P  ++  G   D       + L+  +V+V +L+G+
Sbjct: 38  KVVVAAVDIELGSRVNPQMLSLVDWPSGSLPAGSFKDA------KSLEDRVVKVGVLRGE 91

Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-- 163
            I   KL   G  GGLS+++  GKRA T+ ++    V G   P ++VD VMV +  ++  
Sbjct: 92  AILEGKLAPVGTQGGLSAVIASGKRAMTVRVNDVVGVAGFALPGNYVD-VMVNAQQDKNR 150

Query: 164 ----KPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
               +     VL  + V+A+    + D+ +  V S  TLEL+   ++ L  A+SV  LSL
Sbjct: 151 GEEGRQISKTVLEKVLVLAVAQEANRDDTKPKVVSAVTLELSLEDSEKLDLARSVGTLSL 210

Query: 219 VLRSIAD 225
           VLR+  D
Sbjct: 211 VLRNQMD 217


>gi|319779650|ref|YP_004130563.1| SAF domain protein [Taylorella equigenitalis MCE9]
 gi|317109674|gb|ADU92420.1| SAF domain protein [Taylorella equigenitalis MCE9]
          Length = 325

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 14/221 (6%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNILEWVAFPE 73
           FA+ AGI+A    + +  +    I  N  +  I  +++ GD+  G ++  +IL     PE
Sbjct: 13  FAIGAGILATFSANKYMKEKISQIEANHRQVMIPRIVAAGDIPEGTIIDSSILAVRDIPE 72

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAAT 133
             V      D   P+  + ++G ++  P+  GDP+             S  +  G+RA T
Sbjct: 73  NWVSS----DSLSPDEFERIEGKIITSPLTAGDPVLWAHTSTVSRRPFSEKVAVGRRAVT 128

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNI----DSDER 188
           M +   ++V G+I P D +D+ +  S   R   +T  +L  + V+A D       D  ER
Sbjct: 129 MPVDTINSVSGLIVPGDLIDLYV--SFKYRNRDITAPLLQGVLVLATDKESKLTNDGSER 186

Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
               ST TL+ +P +A  LVAA+    ++  LR+  D   S
Sbjct: 187 EF--STVTLDTSPEEAAKLVAARQDGVITAFLRNPDDKKAS 225


>gi|86159250|ref|YP_466035.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775761|gb|ABC82598.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 307

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+++  DL     +  ++L  V +P  NV +G   D  +      L   +VR  ++KG+P
Sbjct: 62  VVVATIDLPEATTLRADVLTVVQWPSANVPEGAASDPAK------LVDRVVRARVIKGEP 115

Query: 108 IRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSER 163
           +   +L     G GL+++LP G RAA + ++    V G I P D VDV++V    S    
Sbjct: 116 VIESRLAAADAGHGLAAILPPGMRAAAVRVNDVVGVSGFIHPGDSVDVIVVMRPESNGNS 175

Query: 164 KPTV--TVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLS 217
            P     ++L N+ V+A+   ++ +ER L  S     ATL +   Q++ L  AQ+   + 
Sbjct: 176 NPAYFSKIILQNVPVLAVGKELERNERSLEKSLPATVATLMVDSEQSEKLALAQTKGNIL 235

Query: 218 LVLRS 222
           L LRS
Sbjct: 236 LTLRS 240


>gi|84685163|ref|ZP_01013062.1| pilus assembly protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666895|gb|EAQ13366.1| pilus assembly protein [Rhodobacterales bacterium HTCC2654]
          Length = 275

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           + S L  G RA  + ++  +AVGG + P DHVD+V+ +   +   T  V+L + RV+A+D
Sbjct: 119 IGSTLSPGTRAVAIRVNADTAVGGFVSPGDHVDIVLTQGRGDTLRT-GVILQDTRVLAVD 177

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS----DV 236
            + ++        T T+E+ P  ++ LV AQ   +LSL+LR+   +  +   D     DV
Sbjct: 178 QDTEA-RGARKARTITVEVAPRDSQRLVLAQEAGQLSLILRNDDAIGDTGEMDQITLRDV 236

Query: 237 WDVQEEGKEIQII 249
           W   E   E +++
Sbjct: 237 WGDPEPTPEPEVV 249


>gi|197123318|ref|YP_002135269.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K]
 gi|196173167|gb|ACG74140.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K]
          Length = 307

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+++  DL     +  ++L  V +P  NV +G   D  +      L   +VR  ++KG+P
Sbjct: 62  VVVATIDLPEATTLRADVLSVVQWPSANVPEGAASDPAK------LVDRVVRARVIKGEP 115

Query: 108 IRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSER 163
           +   +L     G GL+++LP G RAA + ++    V G I P D VDV++V    +    
Sbjct: 116 VVESRLAAADAGHGLAAILPPGMRAAAVPVNDVVGVAGFIHPGDSVDVIVVMRPETNGNS 175

Query: 164 KPTV--TVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLS 217
            P     ++L N++V+A+   +  +ER L  S     ATL +   Q++ L  AQ+   + 
Sbjct: 176 NPAFFSKIILQNVQVLAVGKELGRNERSLEKSLPATVATLMVDSEQSEKLALAQTKGSIL 235

Query: 218 LVLRS 222
           L LRS
Sbjct: 236 LTLRS 240


>gi|126729099|ref|ZP_01744913.1| CpaB family protein [Sagittula stellata E-37]
 gi|126710089|gb|EBA09141.1| CpaB family protein [Sagittula stellata E-37]
          Length = 288

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 23/189 (12%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH-------QPN-AMQELDGVLV 98
            + +S   +A G  +T   +    +PEE + +G  D+         +P  A++ +D    
Sbjct: 49  QIYVSARPIAYGQEITEEDIRLAPWPEEIMPEGIFDEETPLLTENMEPRVALRAIDAFEA 108

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
            VP     P         G+ GL+  L  G+ A  + + ++S V G ++P D VDV    
Sbjct: 109 IVPSKVSQP--------GGSAGLTHYLKPGESAFAIRVDVASGVSGFLRPGDRVDVYWTG 160

Query: 159 SLSERKPTV------TVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQ 211
            +  R P +       ++L+ IR+IAID N ++D     +  T T+  T  Q   L  AQ
Sbjct: 161 RVDSRDPNMPRGEVTKMILAGIRLIAIDQNSEADTSGTSIARTVTVAATREQTLVLTHAQ 220

Query: 212 SVAKLSLVL 220
           S  +L+L L
Sbjct: 221 STGQLTLSL 229


>gi|269962016|ref|ZP_06176371.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3]
 gi|269833339|gb|EEZ87443.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3]
          Length = 251

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 30/229 (13%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVV-- 61
           +M +++S VF L A +IA + +   +  T E+  I  +P     VL++  +L  GMV+  
Sbjct: 7   VMLLLLSIVFGLAAVLIAKQWIDGQNQPTVELEEIERHP-----VLVAAMELEPGMVLEE 61

Query: 62  ---TPNILE--WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
              T  ++E  W+   EE+               ++  G +V   I  G+ +   +L   
Sbjct: 62  KHLTTKLMEVDWI---EEDTLK----------VSEQALGRIVANTIYSGEMVNPNRLALP 108

Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNI 174
           G G  L++L+P+ KRA T+ ++    V G + P + VD++   S  + K   T  VL NI
Sbjct: 109 GEGATLAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNI 168

Query: 175 RVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
           +V+A+D    + D + ++    TLE+TP +A+ L++  S  K+ L LR+
Sbjct: 169 KVLAVDQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRN 217


>gi|110679398|ref|YP_682405.1| pilus assembly domain-containing protein [Roseobacter denitrificans
           OCh 114]
 gi|109455514|gb|ABG31719.1| pilus assembly domain protein [Roseobacter denitrificans OCh 114]
          Length = 282

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 12/230 (5%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI----NVLISKGDLAVGMVV 61
           + G+V+    AL  G + M        Q E    +     I     V ++   L  G  +
Sbjct: 4   IFGMVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMHSAIVPTQQVFVATRHLRYGDTL 63

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            P  +  V +P   +  G   D+    P    E    L+  P+   + +   K+ + G  
Sbjct: 64  KPEDVRAVNWPVNAIPQGVFTDIAALFPEGTDEPR--LIIRPMEPSEAVLAVKITEPGED 121

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIR 175
            GL++ L KG RA  + + ++S V G ++P D VDV     V++ + R+    ++ + +R
Sbjct: 122 IGLTTRLEKGMRAFAIRVDVASGVSGFLRPGDKVDVYWTGGVQTGNGREDVTKLIQTAVR 181

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +IA+D   D      +  T T+  TP Q  AL  AQS   LSL L  + D
Sbjct: 182 LIAVDQIDDQMNGARIARTVTVAATPEQVAALAQAQSTGNLSLSLVGVGD 231


>gi|163751743|ref|ZP_02158961.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99]
 gi|161328395|gb|EDP99554.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99]
          Length = 270

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 93/163 (57%), Gaps = 12/163 (7%)

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKP 148
            +E +G++V+  +  G+ +R E+++ +G G  L+SL+    RA T+ ++    V G + P
Sbjct: 78  FEEAEGMVVKHNLYSGEILRSERIIKKGEGSTLASLISPNMRAVTIRVNDVIGVAGFLLP 137

Query: 149 NDHVDVVMVRSLSERKPTVT--VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205
            + VDV+   +L ++  ++   +VL+NI+++AID    +DE +  +    TLE++  QA+
Sbjct: 138 GNRVDVL---NLFKKDGSLHTDIVLANIKILAIDQRSSNDENKPTLVRAVTLEMSLEQAE 194

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248
            L+ A+   KL L LR     NP+ S + ++  + E+ +  +I
Sbjct: 195 TLLIAKGRGKLQLALR-----NPNDSAEVELALINEKQQREEI 232


>gi|28899194|ref|NP_798799.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836767|ref|ZP_01989434.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810]
 gi|260361568|ref|ZP_05774595.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030]
 gi|260876725|ref|ZP_05889080.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034]
 gi|260898196|ref|ZP_05906692.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466]
 gi|260900396|ref|ZP_05908791.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037]
 gi|28807418|dbj|BAC60683.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749913|gb|EDM60658.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810]
 gi|308089099|gb|EFO38794.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466]
 gi|308091466|gb|EFO41161.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034]
 gi|308109142|gb|EFO46682.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037]
 gi|308114026|gb|EFO51566.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030]
 gi|328474269|gb|EGF45074.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 10329]
          Length = 251

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 4/146 (2%)

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISI 138
           +IDD       Q L G +V   I  G+ +   +L   G G  L++L+P+ KRA T+ ++ 
Sbjct: 73  WIDDETLKVPEQAL-GRIVANTIYAGELVNPNRLAQPGEGATLAALIPENKRAVTIRVND 131

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNIDS-DERVLVGSTAT 196
              V G + P + VDV+   S  + K   T+ VL NI V+A+D    + D + ++    T
Sbjct: 132 VIGVAGFLLPGNKVDVLSTVSYGKGKQATTLTVLKNINVLAVDQTAKTNDNKPVIVRAVT 191

Query: 197 LELTPMQAKALVAAQSVAKLSLVLRS 222
           LE+TP +A+ L++A S  ++ L LR+
Sbjct: 192 LEVTPKEAEKLLSANSKGEIQLALRN 217


>gi|209515950|ref|ZP_03264811.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160]
 gi|209503608|gb|EEA03603.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160]
          Length = 375

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 24/245 (9%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ IV+  + A V  II   L     V   +     P     V ++  DL  GM++ 
Sbjct: 1   MPRILKIVILVILASVGAIIFRALF----VAASQPGQARPPAMDRVRVAAADLPEGMLLR 56

Query: 63  PNILEWVAFPEENVFDGFI--DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119
            + L W   P + V  G +   D     A  +L G ++R  +  G  +    ++     G
Sbjct: 57  ESDLAWKEVPHKQVLQGALVKGDAESAEAT-DLKGDVLRHAVTAGTMLGTADVIPPNAPG 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---------SERKPTVTVV 170
            L++ L  G RA ++ I   S   G+I+P D+VDV++ + L         + R      V
Sbjct: 116 FLAAALKPGMRAISVAIDDVSGNAGLIQPGDYVDVLLTQQLDGPVHAPQNTARSVESETV 175

Query: 171 LSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA- 224
           ++ +RV+A+         D+ +      T T E+TP  A+ +  A  +  LSL LRS A 
Sbjct: 176 VNRVRVLAVGSIFQRPKADAADANTRARTVTFEVTPHTAQVIAVATHLGSLSLALRSFAT 235

Query: 225 -DLNP 228
            D NP
Sbjct: 236 SDRNP 240


>gi|260771479|ref|ZP_05880404.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972]
 gi|260613605|gb|EEX38799.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972]
 gi|315181061|gb|ADT87975.1| Flp pilus assembly protein CpaB [Vibrio furnissii NCTC 11218]
          Length = 249

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 7/144 (4%)

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPND 150
           E+ G +    I   + I  ++L   G G  L++L+P+ KRA T+ ++    V G + P +
Sbjct: 84  EVIGKIAESDIYPNEIIVAQRLSIPGEGATLAALIPEDKRAVTIRVNDVIGVAGFLLPGN 143

Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVA 209
            VDV+     S+     T +L +IRV+A+D    + E + ++    TLE++P +A+ L++
Sbjct: 144 KVDVLNTIQYSKTSANTTTILKDIRVLAVDQTAKTQENKPIIVRAVTLEVSPKEAEKLLS 203

Query: 210 AQSVAKLSLVLRSIADLNPSSSED 233
           A+S   + LVLR     NP + E+
Sbjct: 204 AKSKGDIQLVLR-----NPHAVEE 222


>gi|322434103|ref|YP_004216315.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9]
 gi|321161830|gb|ADW67535.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9]
          Length = 291

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 12/176 (6%)

Query: 55  LAVGMVVTPNILEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           L  G  + P+ +E V +P  N +  GF+         ++L G  V  P+ K  P+  + L
Sbjct: 48  LQSGEQLKPDSMELVNWPASNPIAGGFLKP-------EDLVGRSVLYPVEKDQPLTDKLL 100

Query: 114 VDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKPTVTVVL 171
              G+G GL++ +P G RA ++       V G + P  H+DV V  R+    +P    VL
Sbjct: 101 STAGSGPGLAARIPAGMRAISLKSDEIMGVAGFLSPGSHLDVLVTYRTDKNPEPVTLTVL 160

Query: 172 SNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
            +  V+A    I  D D + +  +  TL LTP  A+  V A S   +  +LRS +D
Sbjct: 161 QDAEVLAAGQKIQPDPDGKPVTATVVTLLLTPEDAQRAVLASSQGAIHFILRSGSD 216


>gi|332284570|ref|YP_004416481.1| putative secreted protein [Pusillimonas sp. T7-7]
 gi|330428523|gb|AEC19857.1| putative secreted protein [Pusillimonas sp. T7-7]
          Length = 326

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 15/224 (6%)

Query: 14  VFALVAGIIAMRLVSPH---HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           + A VAG+ A      H    VQ  E     P   +  +++  DL  G  + P  L    
Sbjct: 14  LLAGVAGLGAAWAAKQHIDGKVQLLEAQARTP--MVERIVAAYDLPAGTRLGPEHLALRH 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
           FP      G +     P    EL G ++R P+  GD +       + +   SS L  G+R
Sbjct: 72  FPANVASSGSL----APGRFTELTGTMLRAPLRGGDAVLEVHTTGQDHAAFSSHLSAGRR 127

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN---IDSDE 187
           A +M +   ++V G+++P D +D + V    +R+     +L  + V+A D N   +    
Sbjct: 128 AISMPVDAINSVSGLLQPGDLID-LYVSFEYQRRHITAPLLQGVLVLATDANTQFVQDAG 186

Query: 188 RVLVGS--TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
               GS  T TL+ +P  A  LVAA+    ++ VLR   D+  S
Sbjct: 187 HASRGSYATVTLDASPEDAVKLVAARQGGTITAVLRPPQDVASS 230


>gi|149912018|ref|ZP_01900612.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
 gi|149804917|gb|EDM64951.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
          Length = 288

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 22/204 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN-AMQELDGVLV 98
           ++  K   VL+S  D+ +G   + ++  W    E +V D  ID + + N ++Q L   + 
Sbjct: 35  QDTVKTYEVLVSTQDVVIGRPYSASLFAWKTVDESSVRDR-IDFIDKANFSIQALKNTVA 93

Query: 99  RVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + G  +     +    GG LS +L    RA ++ +   +A  G+I P DHVDV+++
Sbjct: 94  AADFVTGQILSPSDFLKPEQGGFLSVMLRPNYRAVSIPVDEVTANSGLIGPGDHVDVLLL 153

Query: 158 RSLSE---------RKPTVTVVLSNIRVIAIDHNID---------SDERVLV-GSTATLE 198
            S S+         +   V  +  N+RV+A +  +           ++ V+   ST TLE
Sbjct: 154 ASKSQELRSRGNETQSLYVKTIAQNVRVLAFNDALQLARYMEKQKHNKGVIPDNSTVTLE 213

Query: 199 LTPMQAKALVAAQSVAKLSLVLRS 222
           ++P+QA  +  A  +  LS+VLRS
Sbjct: 214 VSPLQANQITLANQLGTLSMVLRS 237


>gi|312883753|ref|ZP_07743472.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368502|gb|EFP96035.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 279

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 27/223 (12%)

Query: 22  IAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           IA+ L++P   Q E+  ++  A+ F  VL++K  + VG   T N+ +W    E+ +   +
Sbjct: 18  IAILLLNPSKPQFEQ--SQAAAEIFKRVLVAKQRVVVGQPYTLNMFQWEKVSEQEL-SNY 74

Query: 81  IDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP--KGKRAATMDIS 137
           +D + + +  + +L   +    I  G  +  +   +  NGG+S       G RA ++ + 
Sbjct: 75  LDFISEEDFSRLDLKSGIAHTAIQSGQVMSKDDF-ETPNGGISMAFKVQNGHRAISVPVD 133

Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTVVLSNIRVIAIDHNIDSDE- 187
             +A  G ++P D VD++++ S  E             VT +  N+RV+A +   D  + 
Sbjct: 134 AVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTTIAVNVRVLAFNQYADPQDF 193

Query: 188 ---RVLVG------STATLELTPMQAKALVAAQSVAKLSLVLR 221
              R   G      S+ +LE+TP QA  +V A  + KL+L LR
Sbjct: 194 QKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLSLR 236


>gi|260892925|ref|YP_003239022.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4]
 gi|260865066|gb|ACX52172.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4]
          Length = 233

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 21/210 (10%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD---GVLVR 99
           A +++V+++  D+ V   +TP++L+    P   V          P A++ ++   G +  
Sbjct: 36  AHYVSVVVAAQDIPVRTSLTPSLLKLQDLPSSCV---------HPLAVRRIEDAVGRVTT 86

Query: 100 VPILKGDPIRLEKLVDRGNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           VP+++G+ +   KL    +    L+  L  G+RA T+ ++  S VGG++KP D VDVV  
Sbjct: 87  VPLVRGEVLLQSKLASSKDEKQELALSLQPGERAVTLAVNAVSGVGGVLKPGDRVDVVAT 146

Query: 158 RSLSER--KPTVT-VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
             L  +  K T T +V SN+RV+A+  + +         T TL +TP Q   +  A    
Sbjct: 147 FDLESQGTKTTYTALVASNVRVLALGSSGEKKPY----DTVTLAVTPRQGALITLATERG 202

Query: 215 KLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
            + L LR   +   +      + D+ E GK
Sbjct: 203 SVRLFLRGPKEQEATQLLPVKLPDLLEAGK 232


>gi|148976308|ref|ZP_01813032.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
 gi|145964402|gb|EDK29657.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
          Length = 290

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 109/227 (48%), Gaps = 26/227 (11%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +++ L S  +  +E+V      + I VL+    + +G   TPN  +W A P   + + +I
Sbjct: 18  LSVLLFSQGNNASEKVSVPTTQQTIKVLVPSRTIDIGQNYTPNSFQWKAIPLGEL-ENYI 76

Query: 82  DDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDIS 137
           D V  P ++ E   + G+  +  +++G  +    + + +G   LS  L  G RA ++ + 
Sbjct: 77  DYV-TPESISEDHSMSGI-AQTKLVEGSVLSHADITEPKGGYSLSFKLQPGYRAISVPVD 134

Query: 138 ISSAVGGMIKPNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNIDSDER 188
             +A  G I+P D VD++++ S          S +   VT ++ + RV+A ++   ++  
Sbjct: 135 QITANSGFIQPGDRVDILLLGSQDGELLRYGNSSQGLYVTTIVHDARVLAFNNTQAAESY 194

Query: 189 VLV----------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             V           S+ +LE+TP QA  +V A+ + KL+L LR   D
Sbjct: 195 QKVRDSYGAVIPDNSSVSLEVTPEQANQVVLAEQLGKLTLALRGQND 241


>gi|117619605|ref|YP_855990.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561012|gb|ABK37960.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 296

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 37/218 (16%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD-------GFIDDVHQPNAMQELDG 95
           A+   VL++   +  G  + P  L W   P     +       GF D        + L G
Sbjct: 45  ARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAEEMNLPGLFLFGFTD-------TKALKG 97

Query: 96  VLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
            LV   +  G  +  + LV    +  LS+++  G RA T+ +   +A  G+I+P + VDV
Sbjct: 98  SLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLIRPGNRVDV 157

Query: 155 VMVRSLSER----------KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA--------- 195
           ++    + +          K +  ++L++I+++AID  + +D   L G+ A         
Sbjct: 158 ILTSKHTHQRNAQGAEVTSKQSAEIILTDIKLLAIDAQV-TDIAALNGTVAAQDNFDQVA 216

Query: 196 -TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
            T EL P  A  L+ A  + +L+LVLRS A   P+ SE
Sbjct: 217 VTFELAPSAAARLLLAHRLGELALVLRS-AQAAPTGSE 253


>gi|115358170|ref|YP_775308.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
 gi|115283458|gb|ABI88974.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
          Length = 342

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 18/193 (9%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILK 104
           + V ++  DL  G+++  N L W       V  G F++   QP A  +L G L+R  +  
Sbjct: 40  VRVRVAAADLPEGLLLRDNDLAWKPMARAQVPAGAFVE--SQPGA--DLKGALLRSRVEA 95

Query: 105 GDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           G PIR + ++  G    L++ L  G RA ++ +   S   G+I+P D VDVV+ + +   
Sbjct: 96  GAPIRADNVISAGAPDFLAAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGS 155

Query: 164 KPT-----VTVVLSNIRVIAIDHNID-------SDERVLVGSTATLELTPMQAKALVAAQ 211
             T        V+   RV+A+            + +  +   T TLE+ P  A+ ++ A 
Sbjct: 156 ATTPGTFEAETVVRRARVLAVGSEFQRAKGPASAPDAPVRARTVTLEVAPRTAQVVLVAT 215

Query: 212 SVAKLSLVLRSIA 224
            +  LSL LRS A
Sbjct: 216 RLGSLSLALRSFA 228


>gi|254506783|ref|ZP_05118923.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
 gi|219550364|gb|EED27349.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
          Length = 233

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 7/140 (5%)

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           G +V   I  G+ +   +L   G G  L+SL+P+ KRA T+ ++    V G + P + VD
Sbjct: 73  GQVVATTIFPGEVLHQNRLTVPGEGSTLASLIPENKRAVTIRVNDVIGVAGFLLPGNRVD 132

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQS 212
           V+     S        VL +I+V+A+D    + E + ++    TLE++P  A+ L+ A+S
Sbjct: 133 VLNTIKYSATSANTVTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVSPKDAEKLLTARS 192

Query: 213 VAKLSLVLRSIADLNPSSSE 232
             ++ L LR     NP   E
Sbjct: 193 KGEIQLTLR-----NPHEEE 207


>gi|254229331|ref|ZP_04922748.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25]
 gi|262393416|ref|YP_003285270.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25]
 gi|151938139|gb|EDN56980.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25]
 gi|262337010|gb|ACY50805.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25]
          Length = 251

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 16/222 (7%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVVTP 63
           +M +++S VF L A +IA + +   +  T E+  +  +P     VL++  +L  G +++ 
Sbjct: 7   IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVELEEVERHP-----VLVAAMELEPGTILSE 61

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122
             L       +     +IDD       Q L G +V   I  G+ +   +L   G G  L+
Sbjct: 62  KHLSTKLMEVD-----WIDDETLKVQEQAL-GRIVANTIYAGELVNSNRLALPGEGATLA 115

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAIDH 181
           +L+P+ KRA T+ ++    V G + P + VDV+   S  + +  T   VL NI V+A+D 
Sbjct: 116 ALIPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAVDQ 175

Query: 182 NIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
              + D + ++    TLE+TP +A+ L++A S   + L LR+
Sbjct: 176 TAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRN 217


>gi|330830433|ref|YP_004393385.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565]
 gi|328805569|gb|AEB50768.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565]
          Length = 296

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 43/233 (18%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN-------VFDGFIDDVHQPNAMQELD 94
           P +   VL++   +  G  + P  L W A PE            GF D        + L 
Sbjct: 44  PDRVAQVLVAAHRVQAGSFIHPEDLRWQALPEAEERNLPGLFLFGFTD-------TKALK 96

Query: 95  GVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           G LV   +  G  +  + LV    +  LS+++  G RA T+ +   +A  G+I+P + VD
Sbjct: 97  GSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLIRPGNRVD 156

Query: 154 VVMV----RSLSERKPTVT------VVLSNIRVIAIDHNIDSDERVLVGSTA-------- 195
           V++     R  + +   VT      ++L++I+++AID  + +D   L G+ A        
Sbjct: 157 VILTSKHARQHNAQGAEVTSNQSAEIILTDIKLLAIDAQV-TDIAALNGNPAAQDNFDQV 215

Query: 196 --TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS------EDSDVWDVQ 240
             T EL P  A  L+ A  + +L+LVLRS A   P+ S      E S +W  Q
Sbjct: 216 AVTFELPPRAAARLLLAHRLGELALVLRS-AQSAPAGSPAMALPEGSLIWAEQ 267


>gi|172062958|ref|YP_001810609.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
 gi|171995475|gb|ACB66393.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
          Length = 342

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 18/193 (9%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILK 104
           + V ++  DL  G+++  N L W +     V  G F++   QP A  +L G L+R  +  
Sbjct: 40  VRVRVAAADLPEGLLLRDNDLAWKSMARAQVPAGAFVE--SQPGA--DLKGALLRNRVDA 95

Query: 105 GDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           G PIR + ++  G    L++ L  G RA ++ +   S   G+I+P D VDVV+ + +   
Sbjct: 96  GAPIRADNVISAGAPDFLAAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGS 155

Query: 164 KPT-----VTVVLSNIRVIAIDHNID-------SDERVLVGSTATLELTPMQAKALVAAQ 211
             T        V+   RV+A+            + +  +   T TLE+ P  A+ ++ A 
Sbjct: 156 ATTPGTFEAETVVRRARVLAVGSEFQRAKGPASAPDAPVRARTVTLEVAPRTAQVVLVAT 215

Query: 212 SVAKLSLVLRSIA 224
            +  LSL LRS A
Sbjct: 216 RLGSLSLALRSFA 228


>gi|323493504|ref|ZP_08098626.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
 gi|323312327|gb|EGA65469.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
          Length = 280

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 25/217 (11%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV-HQPNAMQELDGVLVRVPIL 103
           F  VL++K  + +G   T N+ EW    ++ + D ++D +  +  ++Q+    +    IL
Sbjct: 40  FKRVLVAKQKVDIGQPYTLNMFEWKQVSQQEL-DNYLDYISREAFSVQQFTPGIAHSEIL 98

Query: 104 KGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LS 161
            G  +        +G   L+  +  G RA ++ +   +A  G ++P D VD++++ S + 
Sbjct: 99  AGQVMSAGDFSTPKGGVSLAFKVRNGYRAISVPVDSVTANSGFVQPGDKVDILLLGSEVE 158

Query: 162 ERKP--------TVTVVLSNIRVIAIDHNIDSD----ERVLVG------STATLELTPMQ 203
           E K          VT +  ++RV+A +   D+D    +R   G      S+ +LE+ P Q
Sbjct: 159 ELKKYDNKVSGLYVTTIAKDVRVLAFNQYSDADNFQKKRSAYGADLPDNSSVSLEVNPEQ 218

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
           A  +V A  + KL+L LR   +     S+D  ++ V+
Sbjct: 219 ATQIVLANQIGKLTLSLRGAGE---DDSDDQSIYTVK 252


>gi|269966891|ref|ZP_06180964.1| putative pilus assembly protein [Vibrio alginolyticus 40B]
 gi|269828558|gb|EEZ82819.1| putative pilus assembly protein [Vibrio alginolyticus 40B]
          Length = 251

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 16/222 (7%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVVTP 63
           +M +++S VF L A +IA + +   +  T E+  +  +P     VL++  +L  G +++ 
Sbjct: 7   IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVELEEVERHP-----VLVAAMELEPGTILSE 61

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122
             L       +     +IDD       Q L G +V   I  G+ +   +L   G G  L+
Sbjct: 62  KHLSTKLMEVD-----WIDDETLKVKEQAL-GRIVANTIYAGELVNPHRLALPGEGATLA 115

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-PTVTVVLSNIRVIAIDH 181
           +L+P+ KRA T+ ++    V G + P + VDV+   S  + K  T   VL NI V+A+D 
Sbjct: 116 ALIPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAVDQ 175

Query: 182 NIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
              + D + ++    TLE+TP +A+ L++A S   + L LR+
Sbjct: 176 TAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRN 217


>gi|260463893|ref|ZP_05812089.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
 gi|259030268|gb|EEW31548.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
          Length = 299

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 33/244 (13%)

Query: 6   LMGIV-VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVGMVVT 62
           ++GI  V G  ++ A    ++  +    +T  +    P K  F  ++++   L  GM + 
Sbjct: 1   MIGIAAVFGAISIFAADFWVKSQADAQEKTASIAAPAPPKIEFKTIVVANAPLRYGMELD 60

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL------VRVPILKGDPIRLEKLVD- 115
              L  + +P++++  G         A   +DG+L      V  PI   +P+ L KL   
Sbjct: 61  RTKLIEIPWPQDSLPQG---------AFATIDGLLGEGGRVVLSPIEVNEPVLLTKLSGP 111

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------- 165
            G   LS++L  G RA T+     + VGG + P D VDVV+ R   E +           
Sbjct: 112 NGRATLSNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAG 171

Query: 166 ---TVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
              T  +V+++ +V+++    D  +    + ++ TLE+T   A+ +  A++V  LSL LR
Sbjct: 172 STITSEIVVADAKVLSVGQGADERQTAPQIANSVTLEVTTEGAQKVALARTVGTLSLSLR 231

Query: 222 SIAD 225
           S ++
Sbjct: 232 SASE 235


>gi|78357402|ref|YP_388851.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219807|gb|ABB39156.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 272

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 24/247 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVL--ISKGDLAV 57
           MK + L+ I V+ V AL AG +  R++ +P         T  P K  +V+  ++  D+  
Sbjct: 1   MKKSSLIQIAVALVLALGAGALVFRMMQAPAR-------TAQPPKVASVMLAVAAADMTK 53

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  +    +    F  +    G        ++  EL G ++   +  G+PI   +LV+  
Sbjct: 54  GTRIRAEQITMAEFLLQTAPAGAF------SSADELTGRVLASAVTAGEPITPARLVEDT 107

Query: 118 --NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLS 172
              GG+S+++  GKRA  +  +    + G I+P +HVDV++    + R   K     VL 
Sbjct: 108 VRYGGVSTMISPGKRAVAVKGNNVLGMAGFIRPGNHVDVLVTIDDNRRPQDKAVTKTVLE 167

Query: 173 NIRVIAIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           NIRV+A    ++    D         TLE+ P + + L  A S  ++   LR+ AD +  
Sbjct: 168 NIRVLATGTELEQQGDDTATSPVDIYTLEMLPREVEVLSLAASRGEVHFSLRNPADTDSV 227

Query: 230 SSEDSDV 236
            +  +DV
Sbjct: 228 KTAGTDV 234


>gi|197118221|ref|YP_002138648.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
 gi|197087581|gb|ACH38852.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
          Length = 289

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 117/232 (50%), Gaps = 18/232 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           +TR   +    + AL+ G +A  +++ ++++ +    + P + + +  +  DL +G  + 
Sbjct: 1   MTRPSAMTTVTIIALLLGGLAT-IMANNYLKKQ---ADKPYEGVPIASAAVDLPLGSKLN 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-- 120
              ++   +P++ +  G   D ++P     L G +V  P+  G+ I   KL+   + G  
Sbjct: 57  ATQVKLATWPKDALPAGGYQD-YKP-----LVGRIVVRPLSAGEVITENKLMPLNSSGGI 110

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176
           ++ ++P G RA T+ ++  + V G I PN  VDV++      S +ER     ++L N+ V
Sbjct: 111 MTYMVPDGHRAVTVSVNEVAGVAGFITPNSRVDVLLTIPRPGSTNERDNISKIILQNVPV 170

Query: 177 IAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           +A     +  E  +  V  T TL++TP++A+ L+       L L+LR++ D+
Sbjct: 171 LATGQVTEQKEGGKPGVVPTVTLDVTPIEAEKLIVGTKKGSLQLLLRNVIDV 222


>gi|317154606|ref|YP_004122654.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2]
 gi|316944857|gb|ADU63908.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2]
          Length = 273

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 21/232 (9%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L+ I +S + AL  G++     S     T++ +    A+ + V+++  DL  G+ +TP +
Sbjct: 8   LIQIGISLILALGTGVLIFMWTSGV---TQQPVAAPRAETVPVVVALTDLRPGIKLTPAM 64

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSS 123
           LE   F  ++   G      +P     LDG ++ V +   + +   KL D     GG+S+
Sbjct: 65  LETRQFTPDSRPSGAF---GEPGL---LDGRVLGVAVGANEAVTEAKLADASVIGGGVSA 118

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-----SERKPTVTVVLSNIRVIA 178
           L+  GKRA ++  +    + G ++P D VDV++  SL     ++ +P   +VL  ++V+A
Sbjct: 119 LIEPGKRAMSVKGNAVMGLAGFVRPGDRVDVIV--SLVQGRGNQEEPVTKLVLERVKVLA 176

Query: 179 IDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
               +   D++ +       TLELTP +++ L  A +   L+  LR+  D +
Sbjct: 177 TGTELQAPDTEGKAASVDVYTLELTPDESERLALAATQGTLNFALRNATDTD 228


>gi|294140773|ref|YP_003556751.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12]
 gi|293327242|dbj|BAJ01973.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12]
          Length = 270

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 89/159 (55%), Gaps = 12/159 (7%)

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKP 148
            +E +G++V+  +  G+ +R E+++ +G G  L+SL+    RA T+ ++    V G + P
Sbjct: 78  FEEAEGMVVKHNLYTGEILRSERIIKKGEGSTLASLISPNMRAVTIRVNDVVGVAGFLLP 137

Query: 149 NDHVDVVMVRSLSERKPTVT--VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205
            + VDV+   +L ++   +   +VL+N++++AID    +DE +  +    TLEL+  QA+
Sbjct: 138 GNRVDVL---NLFKKDGALHTDIVLANVKILAIDQRSSNDENKPKLVRAVTLELSLEQAE 194

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
            L+ A+   KL L LR     NP+ S + ++  + E  K
Sbjct: 195 ILLIAKGRGKLQLALR-----NPNDSAEVELALINETEK 228


>gi|237653357|ref|YP_002889671.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T]
 gi|237624604|gb|ACR01294.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T]
          Length = 286

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 15/235 (6%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           + V+ +F L A  +A R +     +  E+      +  + +++K DLAVG  +T +++  
Sbjct: 12  LAVASLFGLGAAWLAARYLE---ERATEIELRQQGQMGHAVVAKTDLAVGTPLTRDLVAV 68

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
              P E +    I     P   +   G ++  P   G+P+   +L +R    LS+ L  G
Sbjct: 69  REVPVEWLHSSAI----TPEQFERAAGAVLAQPARGGEPLVWSQLEERRPATLSAQLAPG 124

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE- 187
           +RA T+ +  +S++ G+++P D +D++          T+  +L  +RV+A        E 
Sbjct: 125 RRATTIPVDETSSLSGLLRPGDRIDLLATVQRDHHHLTLP-LLQGVRVLATGSRTRPGED 183

Query: 188 ----RVLVGS--TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
                +L GS  T TL+L+  +A  LVAA+++A+L+ VLR   D   +  + +D 
Sbjct: 184 DGAGDLLGGSFGTLTLDLSEEEATRLVAARALARLTAVLRHPRDTRTAPLQRTDA 238


>gi|89053489|ref|YP_508940.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1]
 gi|88863038|gb|ABD53915.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1]
          Length = 274

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENV-FDGF--IDDVHQPNAMQELDGVLVRVPI 102
           + +++    L  G  +TP+ ++ + +P E+V F  F  +D++  P+  +E    ++R+ +
Sbjct: 45  VELIVVSRQLRYGEQITPDDVQLIRWPAEHVPFGAFTTMDELFPPD--EEGARTVLRM-M 101

Query: 103 LKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
            + +PI L K+   G + G++S L  G RA  + + ++S V G ++P D VDV       
Sbjct: 102 EQDEPILLVKVTAPGEDAGVASRLEAGMRAIALRVDVNSGVSGFLRPGDRVDVYWTGPGR 161

Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                  ++ +N+++IAID   D       +  T T+   P    AL  AQ    L+L L
Sbjct: 162 NGDTVTRLIRANVQLIAIDQIADEQRNSPTIARTITVTARPEDVAALTQAQGSGSLTLAL 221

Query: 221 RSIAD 225
             + D
Sbjct: 222 VGVGD 226


>gi|218710407|ref|YP_002418028.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32]
 gi|218323426|emb|CAV19603.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32]
          Length = 279

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPND 150
           EL G +V   I  G+ +   +    G G  L++L+P+ KRA T+ +     V G + P +
Sbjct: 114 ELVGKVVANTIYAGEVLHKMRFTIPGEGSTLAALIPENKRAVTIRVDDVIGVAGFLLPGN 173

Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVA 209
            VD++   S S+       VL +I+V+A+D    ++E   ++    TLE++P  A+ L+ 
Sbjct: 174 KVDILSTVSYSKNSAATRTVLKDIKVLAVDQTAKTNENSPIIVRAVTLEVSPKDAEKLLT 233

Query: 210 AQSVAKLSLVLRS 222
           A+S   + L LR+
Sbjct: 234 AKSKGSIQLTLRN 246


>gi|87312293|ref|ZP_01094391.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM
           3645]
 gi|87284997|gb|EAQ76933.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM
           3645]
          Length = 363

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           N+ ++  D+ +   ++P +++   +P++ V +G + +      ++E++    RV +  G+
Sbjct: 26  NIFVAIEDIDINEQLSPELIKLEPWPKDKVPEGAVTN------LEEIENRRPRVRLYAGE 79

Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERK 164
           PI   KL     + G S ++PKG R  ++ ++  ++  G+I P D VDV V +R+     
Sbjct: 80  PILERKLFGSNEDKGASKMIPKGFRVHSVRVTAETSASGLILPGDRVDVLVYLRNSGSIN 139

Query: 165 PTVT-VVLSNIRVIAIDHN----IDSDERVLVGSTATLELTPMQAKALV 208
            T+T  +L N+RV A++       DS+   +   T +L + P Q + L+
Sbjct: 140 KTLTRTILKNVRVFAVNEQTHRETDSEGNTITAKTVSLLVKPSQVEVLM 188


>gi|149911410|ref|ZP_01900028.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
 gi|149805518|gb|EDM65523.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
          Length = 264

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 15/197 (7%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
           P   + +  S   + +G ++    ++    PE    D  + D   P+   E+ G++ +  
Sbjct: 35  PENQVYIAFSTMVIPIGTIIEAKHIKLKILPESMSPDNTVTD---PD---EIYGMIAKDT 88

Query: 102 ILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
           I   D IRLE+L+ +G G  L+SL+ +  RA ++ +     V G + P + +D++   S 
Sbjct: 89  IYIDDIIRLERLLIKGQGSTLASLISENMRAVSIRVDDVVGVAGFLLPGNRIDILNTVSG 148

Query: 161 SERKPTVTVVLSNIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
           +    +  V+L NI+++AID    ID ++  LV +  T+E+   QA+ L+ A++  +L L
Sbjct: 149 NGGATSTEVILHNIKILAIDQRAAIDENKPQLVRAI-TVEVNLEQAEILMTARNQGRLQL 207

Query: 219 VLRSIADLNPSSSEDSD 235
            LR     NP+ S   D
Sbjct: 208 ALR-----NPTDSHAVD 219


>gi|84386798|ref|ZP_00989823.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
 gi|84378326|gb|EAP95184.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
          Length = 293

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 31/246 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM +    +F  V GI  + L   ++        +   + + VL+    + +G  
Sbjct: 1   MTAKRLMLL---SLFCSVLGISVLLLSQTNNESASTSSKQAVKQTVKVLVPTRTIEIGQA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPN--AMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
            TPN   W   P++   + +ID V   +  A   + G L R  ++K D I  +  +    
Sbjct: 58  YTPNSFRWKEVPQQE-LENYIDHVTPEDISADHTMSG-LARTKLVK-DSILSKADITEPE 114

Query: 119 GG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---------SERKPTV 167
           GG  LS  L  G RA ++ +   ++  G I+P D VD++++ S          S +   V
Sbjct: 115 GGYSLSLKLQPGYRAISVPVDQVTSNSGFIEPGDRVDILLLGSQDGELLRYGNSSQGLYV 174

Query: 168 TVVLSNIRVIAIDHNI---------DSDERVLV---GSTATLELTPMQAKALVAAQSVAK 215
           T ++ + RV+A +            +S++   V    S+ +LE+TP QA  +V A+ + K
Sbjct: 175 TTIVHDARVLAFNDKQTAESYQKARESNQHKKVVPDDSSVSLEVTPEQANQVVLAKQLGK 234

Query: 216 LSLVLR 221
           L+LVLR
Sbjct: 235 LTLVLR 240


>gi|258405292|ref|YP_003198034.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM
           5692]
 gi|257797519|gb|ACV68456.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM
           5692]
          Length = 295

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 119/257 (46%), Gaps = 24/257 (9%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVGM 59
           +L  L+ I ++ V A+   +     +     +  T E   E       V+++  D++ G 
Sbjct: 3   RLRALIPIALALVIAIAGSVFIYNWMQEQTTRQDTVEKAREKAPSTQEVVVAALDISAGS 62

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRG 117
            +T  +L+   + ++N+  G   D  Q      L G +   P  K +PI   +L   D  
Sbjct: 63  QLTEEMLQTGQYLKKNLPPGSFTDPDQ------LLGRVALAPFKKNEPIVDHRLAPTDIK 116

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRV 176
           +GG+S+L+ KG RA ++  +    + G + P   VDV++  +  +    +T  +L N+++
Sbjct: 117 SGGVSALISKGNRAVSLGGNKVLGISGFVLPGSRVDVMVTWNDPDSGEQITKRILDNVKI 176

Query: 177 IAIDHNIDSDERVLVGSTA-----TLELTPMQAKALVAAQSVAKLSLVLRSIADLNP--- 228
           +A    +   E    G TA     TLE+TP +A+ L   ++   L + LR+  D  P   
Sbjct: 177 LATSTKMQETES---GGTAPVDVYTLEVTPEEAEILTHIRNQGSLQMALRNPTDNEPVMT 233

Query: 229 --SSSEDSDVWDVQEEG 243
             ++++DS  + ++E G
Sbjct: 234 DGATAKDSMAYMLKENG 250


>gi|317122047|ref|YP_004102050.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
 gi|315592027|gb|ADU51323.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
          Length = 236

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 18/157 (11%)

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNG--GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           G + +VP+ +G+ +   KL  RG+G  GL+  LP+G RA T+      AVGG ++P D V
Sbjct: 84  GKVTKVPLAEGEFVLASKLA-RGDGTDGLAYRLPEGTRALTVAADPVIAVGGFVQPGDRV 142

Query: 153 DVVMVRSLSE---RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA-------TLELTPM 202
           DV +     +    +P V +++ N+ V+A+     ++     G  A       TL ++P 
Sbjct: 143 DVFIGLPGGQPGVAQPEVRLLVENVLVLAVQQQTAAE-----GQPAGEGLTHLTLAVSPA 197

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
            A A+V A+   +L L LR   D  P+    + + D+
Sbjct: 198 HAAAIVLAEQEGRLRLALRPAGDDTPAGPITARLADL 234


>gi|149176582|ref|ZP_01855195.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797]
 gi|148844695|gb|EDL59045.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797]
          Length = 349

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 31/259 (11%)

Query: 14  VFALVAGIIAM---RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V A+  G++AM   R V     Q  EV      K  NVL++  ++  G  +  + +++ +
Sbjct: 4   VIAVGCGLVAMLGVRQVLNKDDQQAEV------KTANVLMTIAEIPPGTPLNESNVKFKS 57

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
           +P + V +G +        +++     ++   + G+ +   KL ++G  G S  +P GKR
Sbjct: 58  WPIDQVPEGAV------TKLEQYKDRSIKTRAVPGEIVMKAKLSEQGVRGASVEIPDGKR 111

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVT-VVLSNIRVIAIDHNID 184
             T  + ++    G+I P D VDV +  + + RKP     T+T V+L  +++ A DH  D
Sbjct: 112 VFTTSVDMTKTHSGLILPGDFVDVYV--TFTARKPEGGMSTITKVILERVKIFATDHLTD 169

Query: 185 ---SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
              ++   +     +L L+P +   L  A+   ++ L LR+ +D    S++  DV    +
Sbjct: 170 VGGTESNQVKSKNISLLLSPREGAMLKLAEKKGEVHLALRAQSD----STDSEDVQFDDD 225

Query: 242 EGKEIQIIKAGVIVNKDGE 260
           E  E+  I+    + KDGE
Sbjct: 226 ELAEVFSIEGSEYL-KDGE 243


>gi|153834044|ref|ZP_01986711.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
 gi|148869599|gb|EDL68589.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
          Length = 251

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 16/222 (7%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVVTP 63
           +M +++S VF L A +IA + +   +  T E+  +  +P     VL++  +L  G     
Sbjct: 7   VMLLLLSIVFGLAAVLIAKQWIDGQNQPTVELEEVERHP-----VLVAAMELEPG----- 56

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122
            ILE      + +   +I++     + Q L G +V   I  G+ +   +L   G G  L+
Sbjct: 57  TILEEKHLTTKLMEVDWIEESTLKVSEQAL-GRIVANTIYSGEMVNPNRLALPGEGATLA 115

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDH 181
           +L+P+ KRA T+ ++    V G + P + VD++   S  + K   T  VL NI+V+A+D 
Sbjct: 116 ALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVLAVDQ 175

Query: 182 NIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
              + D + ++    TLE+TP +A+ L++  S  K+ L LR+
Sbjct: 176 TAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRN 217


>gi|326797326|ref|YP_004315146.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1]
 gi|326548090|gb|ADZ93310.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1]
          Length = 315

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 51/277 (18%)

Query: 9   IVVSG--VFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
             VSG  +FAL   ++   L++  P      +V+ + P  +  VL++   L  G  +   
Sbjct: 7   FFVSGALIFALGGALLGSALLTSEPPPKTVTKVVPKKP-NYRAVLVASNTLRPGDFMNAT 65

Query: 65  ILEWVA----FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
            +EW A    +PE+  F   +D+  Q      L G  V  PI  G  +  + LV  G  G
Sbjct: 66  SIEWRAADKQYPEDAFFLKGLDEKSQ------LYGATVTQPIPAGTELESDLLVSPGEPG 119

Query: 121 L-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VRSLSERKPTVTV----- 169
             +S+L  G RA  +   + ++  G+I   D VDV++         ++  P  T+     
Sbjct: 120 FIASVLKPGMRAVAIPADVVTSNAGLISGGDRVDVILSLKRDYEQGADNNPLATIKLPKL 179

Query: 170 ----VLSNIRVIAIDHNI------------------DSDERVLVGSTATLELTPMQAKAL 207
               +L N+RV++++  +                  DS++R     T TLE+ P   + L
Sbjct: 180 ASQTLLRNVRVLSLNGTLDAFREKVQKVESKKEKKTDSNKRKSY-ETVTLEVLPKDVERL 238

Query: 208 VAAQSVAKLSLVLRSI--ADLNPSSSEDSDVWDVQEE 242
             A+ V  L L LRS+   DL  S+S + D  + Q E
Sbjct: 239 TVAREVGILQLALRSVQGQDLALSTSPEKDSKESQSE 275


>gi|126737255|ref|ZP_01752990.1| CpaB family protein [Roseobacter sp. SK209-2-6]
 gi|126721840|gb|EBA18543.1| CpaB family protein [Roseobacter sp. SK209-2-6]
          Length = 285

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 23/247 (9%)

Query: 6   LMGIVVSGVFALVAGIIAM--RLVSPHHV-------QTEEVITENPAKFINVLISKGDLA 56
           + G+V+    AL  G + M  + +S H            EVI   P   I V + +  L 
Sbjct: 4   VFGLVLIVGVALAGGAVMMAKKYISAHQAALAHERANRAEVI---PTTEIYVAVKQ--LK 58

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPILKGDPIRLEKLV 114
            G  +T   ++ V +P E++ +G  +   +  P A      V++R+ I   + I   K+ 
Sbjct: 59  YGERLTAEAVKKVRWPTESLPEGAFEMEAELFPTAKPSDQRVVLRM-IEPNEAILAVKVT 117

Query: 115 DRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVT-V 169
             G + G++S L +G RA  + + ++S V G ++P D VDV    + R  S +   +T +
Sbjct: 118 KPGEDAGITSQLQRGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGVARGASGQDGEMTRL 177

Query: 170 VLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           + S+I +IA+D +  +D    ++  T T+ + P Q  AL  AQ+  +LSL L    D   
Sbjct: 178 IESSIELIAVDQSASTDVNGAMIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTV 237

Query: 229 SSSEDSD 235
           +S+ + D
Sbjct: 238 ASAIEVD 244


>gi|148976663|ref|ZP_01813350.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
 gi|145964014|gb|EDK29272.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
          Length = 249

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149
           +EL G +V   I  G+ +   +    G G  L++L+P+ KRA T+ +     V G + P 
Sbjct: 83  EELIGKVVANTIYAGEVLHKLRFTVPGEGSTLAALIPENKRAVTIRVDDVIGVAGFLLPG 142

Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALV 208
           + VD++   S  +       VL +I+V+A+D    + E   ++    TLE+TP  A+ L+
Sbjct: 143 NKVDILNTVSYGKNSAATQTVLKDIKVLAVDQTARTKENSPIIVRAVTLEVTPKDAEKLL 202

Query: 209 AAQSVAKLSLVLRS 222
            A+S   + L LR+
Sbjct: 203 TAKSKGSIQLTLRN 216


>gi|87199533|ref|YP_496790.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
 gi|87135214|gb|ABD25956.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
          Length = 260

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 10/140 (7%)

Query: 102 ILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
           I  G+PI   ++    G   L++ LP G  A ++ IS  + V G ++P D VD+++ R +
Sbjct: 58  IAAGEPILASRVTGTDGRATLAAALPPGMVAVSLPISDVTGVSGFVRPGDLVDIILTRQI 117

Query: 161 -----SERKPTVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVA 214
                 ++     V+L  + V+ ID   D S    +VG TAT+++  + A+ L  A+ + 
Sbjct: 118 PGEGAGQQDKMTDVILRQVAVLGIDQVADKSKTEAVVGKTATVQVDTLGAQKLALARELG 177

Query: 215 KLSLVLRSIA---DLNPSSS 231
            LSL LRS+A   D  P+ +
Sbjct: 178 TLSLGLRSLASVEDTGPTRT 197


>gi|84387246|ref|ZP_00990267.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
 gi|84377893|gb|EAP94755.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
          Length = 249

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 81  IDDVHQPNAMQELD--GVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDIS 137
           +D +++ N   + D  G +V   I  G+ +   +    G G  L++L+P+ KRA T+ + 
Sbjct: 71  VDWINENNYSDKADLIGKVVANTIYAGEVLHKLRFTVPGEGSTLAALIPENKRAVTIRVD 130

Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTAT 196
               V G + P + VD++   S  +       VL +I+V+A+D    + E   ++    T
Sbjct: 131 DVIGVAGFLLPGNKVDILNTISYGKNSAATQTVLKDIKVLAVDQTAKTKENSPIIVRAVT 190

Query: 197 LELTPMQAKALVAAQSVAKLSLVLRS 222
           LE+TP +A+ L+ A+S   + L LR+
Sbjct: 191 LEMTPKEAEKLLTAKSKGSIQLTLRN 216


>gi|297581607|ref|ZP_06943529.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385]
 gi|297534014|gb|EFH72853.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385]
          Length = 294

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 42/223 (18%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEEN---VFDGFIDDVHQPNAMQELDGVLV-----R 99
            L +K  +  G ++      WV    E+   + D F+++  Q +A   L+G L+      
Sbjct: 52  ALAAKYPVQAGALLRAQDFHWVELGSEHNASLNDLFLENFSQLDA---LEGSLITRHQDE 108

Query: 100 VPILK-GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-- 156
             +L   D IR E+     +  +S++L  GKRA T++++ +    G+++P + VDVV+  
Sbjct: 109 SQLLNVNDIIRPEQ-----SHYVSAMLAPGKRAVTLELTQAGVSHGLLRPGNWVDVVLTN 163

Query: 157 ---VRSLSERKPTVTVVLSNIRVIAIDH---------------NIDSDERVLVGSTATLE 198
              V S S  K   T VL  +R++AI                 N +S E V V    T E
Sbjct: 164 ESNVESASTPKYAATTVLEGVRLLAIGSVVTEFIAKQSVENGANPNSYEPVRV----TFE 219

Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV-WDVQ 240
           ++P  AK L+ AQ +  LSLVLRS  + + +  E+  + WD Q
Sbjct: 220 VSPSDAKHLLLAQRLGVLSLVLRSQFESDLAEMEEGSILWDEQ 262


>gi|148261012|ref|YP_001235139.1| SAF domain-containing protein [Acidiphilium cryptum JF-5]
 gi|326404412|ref|YP_004284494.1| putative pilus assembly protein [Acidiphilium multivorum AIU301]
 gi|146402693|gb|ABQ31220.1| SAF domain protein [Acidiphilium cryptum JF-5]
 gi|325051274|dbj|BAJ81612.1| putative pilus assembly protein [Acidiphilium multivorum AIU301]
          Length = 275

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K + +L +   LA G ++ P        P   V    + D   P       G +VR  + 
Sbjct: 37  KMVALLATGRPLAPGTLLQPADFVAENRPPSKVPADAVPDT--PANRAAYTGAMVRHRLS 94

Query: 104 KGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
            GD +  + ++  G+ G L+++L  G RA ++ +   +   G+I P DHVD+++ + L+ 
Sbjct: 95  AGDLLATDIVIRPGDHGFLAAVLQPGMRAVSVGVDAITGAAGLIWPGDHVDLLLTQHLTG 154

Query: 163 RK--PTVTV----VLSNIRVIAIDHNI---DSDERVLVGSTA---TLELTPMQAKALVAA 210
               PT  V    VLS++RVIAID  +    S       +TA   TLE+TP QA+ +  A
Sbjct: 155 ANLLPTQRVAAETVLSDVRVIAIDQRLVQGASGTHPAAKNTARTVTLEVTPEQAERVEVA 214

Query: 211 QSVAKLSLVLR 221
             +  LSL++R
Sbjct: 215 AHLGPLSLIVR 225


>gi|86137992|ref|ZP_01056568.1| CpaB family protein [Roseobacter sp. MED193]
 gi|85825584|gb|EAQ45783.1| CpaB family protein [Roseobacter sp. MED193]
          Length = 286

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 14/190 (7%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDG---FIDDVHQPNAMQELDGVLVRVPIL 103
           +V ++   L  G  +T + +  V +P + + +G    ++ +  P    +L  VL     +
Sbjct: 49  DVFVATKQLKYGERLTEDAVRKVRWPSDAIPEGAFTTLETLFPPANPGDLRVVLR---TM 105

Query: 104 KGDPIRLE-KLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           + D   LE KL + G + G++S L +G RA  + + +SS V G ++P DHVDV     + 
Sbjct: 106 EKDEALLEAKLTNPGQDAGITSQLQRGMRAFAISVDVSSGVSGFLRPGDHVDVYWTGGVR 165

Query: 162 E----RKPTVTVVLS-NIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAK 215
           +    R   +T ++  +I +IA+D +  ++     +  T T+ + P Q  AL  AQ+  +
Sbjct: 166 DGSGGRGQEITRLIEPSIELIAVDQSASTETNGATIARTVTVAVQPEQVAALAQAQTTGR 225

Query: 216 LSLVLRSIAD 225
           LSL L    D
Sbjct: 226 LSLSLVGAGD 235


>gi|85859140|ref|YP_461342.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
 gi|85722231|gb|ABC77174.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
          Length = 295

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 18/210 (8%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           L++ + +Q        P +   V+++  D+    V+T +++    F +E++ +G+  D  
Sbjct: 22  LLAYNWIQKTATAKAKPQEMQKVVVAAFDVPWSTVLTKDMVRTATFLKESLPNGYYLDPA 81

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVG 143
           Q      + G  V  PI   +PI   +L       GG+++++   KRA ++ +     V 
Sbjct: 82  Q------IVGRTVIQPIRTNEPITEARLAPTSIRTGGVAAVITPSKRAMSVKVDKVVGVS 135

Query: 144 GMIKPNDHVDVVMVRSLSERK-----PTVTVVLSNIRVIAIDHNIDSD---ERVLVGSTA 195
           G I P + VDV++  +L+E++     P   +VL NI V+A     +     E+       
Sbjct: 136 GYIHPGNRVDVLV--TLNEQRGEVTAPVTKIVLENILVLASGPEFNETKKGEKPANVDVI 193

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           TLE+TP + + L  A +  K+ L LR+  D
Sbjct: 194 TLEVTPEEGEKLALASTEGKIQLALRNFGD 223


>gi|319783875|ref|YP_004143351.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169763|gb|ADV13301.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 301

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 24/219 (10%)

Query: 28  SPHHVQTEEVITENPA------KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           S     +EE  +  PA      +F  ++++   L  GM +    L  + + +E+V  G  
Sbjct: 22  SQAKADSEEKTSSIPAPVVPKVEFKTIVVANAPLRYGMELDRAQLSEIPWSQESVPQGAF 81

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISS 140
             +   NA+      +V  PI   +P+ L KL    G   LS+++  G RA T+     +
Sbjct: 82  TTI---NALLADGSRVVLSPIEVNEPVLLTKLSGPNGRATLSNMMTPGMRAVTIRTDEIA 138

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP-------------TVTVVLSNIRVIAIDHNIDSDE 187
            VGG + P D VDVV+ R   E +              T  +V+++ +V+++    D  +
Sbjct: 139 GVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTITSEIVVADAKVLSVGQGADERQ 198

Query: 188 RV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
               + ++ T+E+T   A+ +  A++V  LSL LRS ++
Sbjct: 199 TTPQISNSVTIEVTTDGAQKVALARTVGTLSLSLRSASE 237


>gi|83950065|ref|ZP_00958798.1| CpaB family protein [Roseovarius nubinhibens ISM]
 gi|83837964|gb|EAP77260.1| CpaB family protein [Roseovarius nubinhibens ISM]
          Length = 281

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 41  NPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVL 97
            PA K ++V ++K  LA G  +T   +  V +P   + +G    V    P   +E   VL
Sbjct: 34  QPAIKTVDVYVAKRALAYGDRLTKEDVVQVKYPARALPEGVFQTVEDLFPEGQKEFRTVL 93

Query: 98  VRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
               + K + +   K+   G + G+ + L +GKRA  + +  +S V G ++P D VDV  
Sbjct: 94  R--AMEKYEALLGVKVTAPGEDAGILTKLERGKRAFAIKVDTTSGVAGFLRPGDRVDVYW 151

Query: 157 --------VRSLSERKPTVT-VVLSNIRVIAIDHNI-DSDERVLVGSTATLELTPMQAKA 206
                   +R+  +    VT ++L+ + +IA+D +  D     ++  T T+ ++P +  A
Sbjct: 152 TGNTGRGGLRTEGDSTGDVTKLILTGVNLIAVDQSSNDQTTGAILARTVTVAVSPQEVAA 211

Query: 207 LVAAQSVAKLSLVL 220
           L  AQ+  KL+L L
Sbjct: 212 LAQAQATGKLTLSL 225


>gi|157375509|ref|YP_001474109.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis
           HAW-EB3]
 gi|157317883|gb|ABV36981.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis
           HAW-EB3]
          Length = 274

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 8/150 (5%)

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           +G++V+  +  G+ +R E++  +G G  L+SL+    RA T+ ++    V G + P + V
Sbjct: 82  EGMVVKQNLYAGEVLRSERITVKGEGSTLASLISPQMRAVTIRVNDVVGVAGFLLPGNRV 141

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
           DV+ +     R  T  VVL+N++++AID    +DE +  +    TLEL   QA+ L+ A+
Sbjct: 142 DVLNLFKRGGRLQT-DVVLANVKILAIDQRSSNDENKPKLVRAVTLELNLEQAEVLMIAK 200

Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
              KL L LR     NP+ S   ++  + E
Sbjct: 201 GRGKLQLALR-----NPNDSTKVELALINE 225


>gi|254512153|ref|ZP_05124220.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11]
 gi|221535864|gb|EEE38852.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11]
          Length = 290

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 28/233 (12%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKF---------------------INVLISK 52
           VF LV  II + L         E IT+N AK                      ++VL+S 
Sbjct: 4   VFGLVL-IIGVALAGGAVYMAREYITDNQAKLAQERKLREEALANAKAGLVPTVDVLVSN 62

Query: 53  GDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
             L  G  +T   +  V +PE  + +G F++        ++ +  ++R  + K + I   
Sbjct: 63  RSLKYGEQLTQEDIRVVQWPENAIPEGTFVEIAALFPDTRDNERFVLRA-MEKDEAIMAV 121

Query: 112 KLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVT- 168
           K+   G   GL S LPKG RA  + + ++S V G ++P D VDV    ++ SE +  +T 
Sbjct: 122 KVTAPGETAGLRSQLPKGMRAFAISVDVASGVSGFLRPGDTVDVYWTGAVRSEGRGEITR 181

Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +VL+NI ++A+D     D     +  T T+  TP Q  AL  AQ+  ++SL L
Sbjct: 182 LVLTNIELVAVDQTAGLDVTGTTIARTVTVAATPQQIAALAQAQNTGRMSLAL 234


>gi|86147468|ref|ZP_01065780.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222]
 gi|85834761|gb|EAQ52907.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222]
          Length = 249

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 15/221 (6%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVVTP 63
            +  ++S VF L A   A + +      T EV  +  +P    +  I  G +     +T 
Sbjct: 7   FLLFLLSVVFGLAAVFFAKQWMDNQVQPTIEVEEVERHPVVVASQEIEAGTVIEDQYLTT 66

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122
            ++E     E N  D             EL G +V   I  G+ +   +    G G  L+
Sbjct: 67  KLMEVDWINENNYSD-----------QNELIGKVVANTIYAGEVLHKLRFTVPGEGSTLA 115

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
           +L+P+ KRA T+ +     V G + P + VD++   S  +       VL +I+V+A+D  
Sbjct: 116 ALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATRTVLKDIKVLAVDQT 175

Query: 183 IDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
             + E   ++    TLE+TP  A+ L+ A+S   + L LR+
Sbjct: 176 ARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRN 216


>gi|121534342|ref|ZP_01666166.1| SAF domain [Thermosinus carboxydivorans Nor1]
 gi|121307112|gb|EAX48030.1| SAF domain [Thermosinus carboxydivorans Nor1]
          Length = 286

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 25/229 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M +   GV A +A ++++      +   +E   + P + + V+++K D+     +T  ++
Sbjct: 1   MKLSTKGVLA-IALVLSLATTGLIYKYLQEATQKTPQEGVVVVVAKVDIPPKTKITAEMV 59

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELD---GVLVRVPILKGDPIRLEKLVDRG-NGGLS 122
                P E V         QP A++EL    G + R  I+ G+ I   +LV +G + G +
Sbjct: 60  ATAKVPAEYV---------QPGAVRELKTAVGAIAREHIVAGEQIAERRLVIQGKSAGFT 110

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDH 181
            ++P  KRA T+ ++  + V G +KP D+VDVV     +     V+ ++L N+ V+A + 
Sbjct: 111 GIIPPDKRAVTIAVTEVTGVAGFVKPGDYVDVVATFDQNTVGDNVSQIILQNVLVLAANR 170

Query: 182 NI---------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
           +          D  E +   +T TL +TP +   L  A+   K+ L LR
Sbjct: 171 DAEAGAADGAKDKKEAIKT-ATVTLAVTPDEVAQLALAEDKGKVRLALR 218


>gi|13471033|ref|NP_102602.1| hypothetical protein mll0900 [Mesorhizobium loti MAFF303099]
 gi|14021777|dbj|BAB48388.1| mll0900 [Mesorhizobium loti MAFF303099]
          Length = 308

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 30/203 (14%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL------ 97
           +F  ++++K  L  G  +    L  + +P++++  G         A   +DG+L      
Sbjct: 51  EFKTIVVAKAPLRYGQELDRAKLIEIPWPQDSLPQG---------AFATIDGLLGEGNRI 101

Query: 98  VRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           V  PI   +P+ L KL    G   LS++L  G RA T+     + VGG + P D VDVV+
Sbjct: 102 VLSPIEVNEPVLLTKLSGPNGRATLSNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVL 161

Query: 157 VRSLSERK-----------PTVT--VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPM 202
            R   E +            TVT  +V+++ +V+++    D  +    + ++ T+E+T  
Sbjct: 162 TRDAGEIQEVAKNAQGAAGSTVTSEIVVADAKVLSVGQGADERQTTPQITNSVTIEVTTE 221

Query: 203 QAKALVAAQSVAKLSLVLRSIAD 225
            A+ +  A++V  LSL LRS ++
Sbjct: 222 GAQKVALARTVGTLSLSLRSASE 244


>gi|148253053|ref|YP_001237638.1| hypothetical protein BBta_1513 [Bradyrhizobium sp. BTAi1]
 gi|146405226|gb|ABQ33732.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 309

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 27/233 (11%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E  +   PA    VL++   +A+G ++    + W       V  G++       A  E  
Sbjct: 38  ERSVESRPA----VLVAARTIALGTLLRKEDIAWKDVMPGEVRPGYLMRGQVSEA--EFL 91

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           G + R    + +P+   + V  G+   L+++L  G RA ++ +  + +  GM  P D VD
Sbjct: 92  GAISRRNFAQDEPLIASEFVKPGDRQFLAAVLKPGSRAISIFVDAAQSAAGMALPGDRVD 151

Query: 154 VVMVRSLSE------RKPTVTVVLSNIRVIAIDHNIDSDERVL--------VGSTATLEL 199
           V++ +S  E      RK     +L ++RVIAID ++     V         +  T TLEL
Sbjct: 152 VILTQSFGEQATDPGRKTVSETMLRDVRVIAIDQSLTPSTNVAAAISTEARIPKTVTLEL 211

Query: 200 TPMQAKALVAAQSVAKLSLV---LRSIADLNP-SSSEDSDVW--DVQEEGKEI 246
              QA+AL+ A  + K  L    L  +A  +P   +E   VW  DV    +E+
Sbjct: 212 LERQAEALMVAAQLGKFQLAVLPLERVAVEHPEEQTEAGPVWASDVSPALREV 264


>gi|294676058|ref|YP_003576673.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003]
 gi|294474878|gb|ADE84266.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003]
          Length = 291

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 22/235 (9%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVGMV 60
           L  ++G+ ++G+    A  +A + +S   V+ + ++ E  N  + ++V++ +  LA G  
Sbjct: 7   LVLVLGVALAGL----AVYMAQQQISQFQVERDRLVAEQRNAPQLVDVVVLRRPLAYGER 62

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP------------I 108
            T   L  +     ++  G    V  P    E        P  +  P            I
Sbjct: 63  FTAADLGVIKMQVGHLPAGIFHSVATPQGAPEEAQAASVFPGGETRPRAALRAYDAYEAI 122

Query: 109 RLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167
              K+   G + G+++ L    RA T+ +  ++ V G ++P D VDV     ++  + T 
Sbjct: 123 LANKITAPGVDAGITASLSPNMRAFTISVDATTGVSGFLRPGDRVDVYWSGEVNGERVT- 181

Query: 168 TVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            ++ +N+R+IAID + D+D  E   +  T T E+TP Q  +L  AQ   +L+L L
Sbjct: 182 KLIDTNLRLIAIDQSADADRAEETQLAKTVTAEVTPEQVASLTLAQGTGELTLSL 236


>gi|218887828|ref|YP_002437149.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758782|gb|ACL09681.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 274

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 108/233 (46%), Gaps = 17/233 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + L+ I ++ V ALVAG++  R +  +     ++      + + + ++  D+  G  
Sbjct: 1   MRASSLIQISLALVLALVAGVLVFRFMQVNRAAAPQMAAP---EQVELAVAAADVPRGAK 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +    ++   F + +   G       P       G ++   +  G+PI   +L+  G  +
Sbjct: 58  LAAEQIKLAPFLKSSAPSGAFTKDTLPV------GRVLSSAVAAGEPITEARLLQDGASH 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIR 175
           GG+S+L+  G RA  +  +    + G I+P + VDV++     +  + K    +VL N+R
Sbjct: 112 GGVSTLIAPGMRAVAVKGNKVLGLSGFIRPGNRVDVLVTLDDETREKSKSRTKLVLENVR 171

Query: 176 VIAIDHNIDSDERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V+A    +  +      S+    TLE++P QA+ L  A S  +L   LR+ AD
Sbjct: 172 VLATGTELKQEGDDTSTSSVDVYTLEISPPQAEPLALAASRGELHFALRNPAD 224


>gi|89068016|ref|ZP_01155433.1| CpaB family protein [Oceanicola granulosus HTCC2516]
 gi|89046255|gb|EAR52312.1| CpaB family protein [Oceanicola granulosus HTCC2516]
          Length = 281

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 7/191 (3%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQE 92
           E  +       + V      +  G  +TP+ +  V + E  + DG      +  P    +
Sbjct: 37  ERAVAAQATPTVEVYAVTRQIGYGEQLTPDDVTLVKYAEPFLPDGVFRAEEELFPEGDTQ 96

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L  VL   P+   +P+   K+ + G + G++S L +G RA  + + ++S V G ++P D 
Sbjct: 97  LRVVLR--PMEVNEPVLAVKVTEPGEDAGITSRLGRGMRAFAIRVDVASGVSGFLRPGDK 154

Query: 152 VDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVA 209
           VD+      S     VT ++ SN+ +IAID + D S     +  T T+E+TP Q  AL  
Sbjct: 155 VDIYWTGRNSRGGEEVTKLIESNVNLIAIDQSADGSALNTTIARTVTVEITPQQVAALAQ 214

Query: 210 AQSVAKLSLVL 220
           AQS  +LSL L
Sbjct: 215 AQSTGRLSLSL 225


>gi|217978827|ref|YP_002362974.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2]
 gi|217504203|gb|ACK51612.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2]
          Length = 338

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 16/119 (13%)

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIR 175
           L+++L  G+RA ++ +  + +  G++ P D+VDV++ +   +     R+     VL N+R
Sbjct: 122 LAAVLKPGRRALSVSVDAAQSAAGLVLPGDYVDVILTQDFGDKIDIGRRTVSETVLWNVR 181

Query: 176 VIAIDHNIDSD-----ERVLVGS------TATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           VIA+D ++D+      E   +G+      T TLE+   QA+ L+ A  + K  L +R +
Sbjct: 182 VIAVDQSLDAQTSTVAEHTALGAESHIPKTVTLEMFERQAETLLVAAQLGKFQLAVRPL 240


>gi|255597441|ref|XP_002536774.1| conserved hypothetical protein [Ricinus communis]
 gi|223518588|gb|EEF25608.1| conserved hypothetical protein [Ricinus communis]
          Length = 302

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 27/224 (12%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           L+A I+   + S  H   + V T      + + +S  DL  G+++  + L W   P  NV
Sbjct: 16  LIALIVRTVVASISHPAAQAVST------VKIRVSAADLPQGLLLRDDDLAWKDVPAGNV 69

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMD 135
               I   + PNA+ EL G L+R     G  +  + ++     G L++ L    RA ++ 
Sbjct: 70  PAAAIV-ANAPNAI-ELKGALLRHAAAAGTVLGPDDVILPSAPGFLAATLKPDMRAVSVA 127

Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTV----VLSNIRVIAIDHNI------ 183
           I   S   G+I+P D+VD+++ + +  R   P + V    V+  +RV+A+   +      
Sbjct: 128 IDDVSGNAGLIQPGDYVDLLLTQQMDHRTDSPDLAVSSETVVERVRVLAVGSELSRPKTS 187

Query: 184 ---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
              D++ R     T TLE+TP  A+ +  A  +  LS  LRS A
Sbjct: 188 DAPDANNR---ARTVTLEVTPHMAEVVSVAARLGSLSFALRSFA 228


>gi|239908022|ref|YP_002954763.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus
           RS-1]
 gi|239797888|dbj|BAH76877.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus
           RS-1]
          Length = 300

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 20/248 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGM 59
           MK   +  I+++ + AL AG++ +R +    V+  +V    PA   + V+++   +  G 
Sbjct: 1   MKTKAVPHIILAVILALTAGVLTIRWLG--SVRAPKVEQAKPAAPKVEVVVAARAIPKGG 58

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117
            +  ++++   F  E    G + DV      QE  G +    I   DPI  +KL+ +G  
Sbjct: 59  RLDASMVKSKGFEAEAAPQGALRDV------QEAYGRISARDISPDDPITPDKLMPKGAT 112

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNI 174
           +GGL + +  GKRA T+  S     GG+I P   VDV++   +   K       ++L N+
Sbjct: 113 SGGLDASVAPGKRAFTIKGSKIMGSGGLITPGCRVDVLVTYPVPNGKNDEKINKIILENV 172

Query: 175 RVIAI----DHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
            ++      +  I  D R  + +T   TL + P +A+ L  A     L L LR+  D + 
Sbjct: 173 PILTTGTERETKIGKDGREELANTDFYTLMVAPEEAERLALASDTGSLHLALRTPGDADI 232

Query: 229 SSSEDSDV 236
            ++  +DV
Sbjct: 233 VTTSGADV 240


>gi|302391028|ref|YP_003826848.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501]
 gi|302203105|gb|ADL11783.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501]
          Length = 278

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 13/216 (6%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           +E + E P    +V+++K ++     +T + ++    P+E V    +  + Q      L 
Sbjct: 30  QEAVKEQPK--ASVVVAKQNIEPREQITRSKVQLKQVPQETVHSQAVTSISQAVEKFALK 87

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
            ++    +LK   +  E++    + GL+  L   KRA T+ ++  S V G + P D+VDV
Sbjct: 88  DIISGEQLLKPRLLGKEEV----SSGLAFNLADDKRAVTVPVTEVSGVAGFLTPGDYVDV 143

Query: 155 VMVRSLSERKPTVT-VVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQ 211
           V V S  E + TV   VL  ++V+A+  ++  + D++  V  + TL +   +A+ LV A 
Sbjct: 144 VSVFSTYEAQQTVAKTVLQKVKVLAVAQDMVRERDQKPKVTKSVTLGVGLAEAEKLVLAD 203

Query: 212 SVAKLSLVLRSIADLNPSSSE----DSDVWDVQEEG 243
              ++ LVLRS  + + S S     +  V +++EEG
Sbjct: 204 RKGEIRLVLRSAQNESFSMSNGVKFEELVGNLEEEG 239


>gi|261251599|ref|ZP_05944173.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
 gi|260938472|gb|EEX94460.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
          Length = 279

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 29/248 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGM 59
           M   RLM  ++S + + V   IA+ L++P   Q+E+   +  A+ F  VL++K  + VG 
Sbjct: 1   MTAKRLM--LLSLILSAVG--IAILLLNPSKPQSEQ--RQAAAEVFKRVLVAKQGVVVGQ 54

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDRGN 118
             T N+ +W +  E+ + + ++D + +    + +L   +    I  G  +  +      +
Sbjct: 55  PYTLNMFQWKSVSEQEL-NNYLDFISEEEFSRLDLKPGIAHTAIQSGQVMSSDDFETPAS 113

Query: 119 G-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVT 168
           G  ++  +  G RA ++ +   +A  G ++P D VD++++ S  E             VT
Sbjct: 114 GISMAFKVQSGHRAISVPVDAVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVT 173

Query: 169 VVLSNIRVIAIDHNIDSDE----RVLVG------STATLELTPMQAKALVAAQSVAKLSL 218
            +  ++RV+A +   D  +    R   G      S+ +LE+TP QA  +V A  + KL+L
Sbjct: 174 TIAIDVRVLAFNQYADPQDFQKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTL 233

Query: 219 VLRSIADL 226
            LR   ++
Sbjct: 234 SLRGAGEM 241


>gi|147677784|ref|YP_001211999.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum
           SI]
 gi|146273881|dbj|BAF59630.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum
           SI]
          Length = 242

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 20/195 (10%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           F  V +++  +     +T  ++E    P +     +I+++   +  +E+ G + +  IL 
Sbjct: 38  FTRVAVARQRITARTRITAQMIELKDIPAK-----YINELAAVSP-EEIVGKIAKSEILP 91

Query: 105 GDPIRLEKLVDRGNG--GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-- 160
           G+ I  ++L    +   GL+ +L  GKRA T+ ++  S + G+IKP D VDVV    L  
Sbjct: 92  GEQILRDRLAQGSSATDGLAFMLQPGKRAVTVAVNEVSGLAGLIKPGDRVDVVGTFDLQG 151

Query: 161 ---SERKPTVTVVLSNIRVIAIDH-------NIDSDERVLVGSTATLELTPMQAKALVAA 210
               E+    ++++ ++ V++ D        N  + ++     T TL +TP QA+ LV  
Sbjct: 152 APGQEKSSITSILIQDVDVLSTDQATIPLQENGQNGKKEAPARTVTLSVTPEQAQPLVLC 211

Query: 211 QSVAKLSLVLRSIAD 225
                + L+LR   D
Sbjct: 212 SEKGTIRLILRPATD 226


>gi|84501677|ref|ZP_00999849.1| CpaB family protein [Oceanicola batsensis HTCC2597]
 gi|84390298|gb|EAQ02857.1| CpaB family protein [Oceanicola batsensis HTCC2597]
          Length = 265

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPT---VTVVLS 172
           + GL+S L KG RA  + + ++S V G ++P D VD+     +S  +R  +     ++ +
Sbjct: 99  DAGLTSRLEKGMRAFAIKVDVASGVSGFLRPGDKVDIYWTGRVSGMDRNASGEVTKLIET 158

Query: 173 NIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            I++IA+D   + D    ++  T T+ + P Q  AL  AQS  +L+L L
Sbjct: 159 GIQLIAVDQMANGDHSEAMIARTVTVAVNPQQVGALAQAQSTGRLALSL 207


>gi|254487761|ref|ZP_05100966.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101]
 gi|214044630|gb|EEB85268.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101]
          Length = 198

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 9/138 (6%)

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           E++G +V+V     + I   K+   G + GL+S L +G RA T+ + +SS V G ++P D
Sbjct: 5   EVNGDVVQVVARSFEAILAAKVTAPGEDTGLTSRLARGTRAFTIKVDVSSGVSGFLRPGD 64

Query: 151 HVDVVMV-------RSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPM 202
            VDV           +L        ++ + +++IAID +   +     +  T T+ + P 
Sbjct: 65  RVDVYWTGRITVGDSNLRNAGDVTKLIEAGVQLIAIDQSAGGEMNEANIAQTVTVAVKPS 124

Query: 203 QAKALVAAQSVAKLSLVL 220
           Q  AL  AQS  KLSL L
Sbjct: 125 QVAALAQAQSTGKLSLSL 142


>gi|86360579|ref|YP_472467.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284681|gb|ABC93740.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42]
          Length = 304

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 44/220 (20%)

Query: 25  RLVSPHHVQTEE---VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-F 80
           RL++ + V+TEE   V+   P +F + + S+             L  + +P      G F
Sbjct: 33  RLLAMNGVKTEERTLVVAATPMRFGDRIRSEN------------LRAIPWPSNETPTGSF 80

Query: 81  I-------DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAA 132
           +       +D     AM  +D          G+P+   K+   G    LS+ L +G +A 
Sbjct: 81  VSIDLVVGNDAQPRYAMAAID---------PGEPVLSSKITGAGERATLSAALDQGMKAV 131

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------VTVVLSNIRVIAIDHNID-- 184
           ++ ++    V G ++P+D VDV++ R +  R P       V V+L  ++V+A+D   D  
Sbjct: 132 SIRVNDVLGVAGFVRPSDRVDVLLTRVV--RGPAGNDQTFVDVLLQGVKVLAVDQTADER 189

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            DE  +V  T T E+T  +A+ L    S+  LSL LR++A
Sbjct: 190 KDEPSVV-KTVTFEVTTDEAQRLTLGSSIGTLSLALRNVA 228


>gi|330811038|ref|YP_004355500.1| hypothetical protein PSEBR_a4092 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379146|gb|AEA70496.1| Hypothetical protein; putative exported protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 271

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 10/184 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +V+++  ++  G +V    +  V  P + + D   D   Q        G +    IL+GD
Sbjct: 41  SVVVATVEIPFGQMVEAQQVTTVRMPMDTIPDDAFDSSEQAV------GKIATFDILRGD 94

Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            +R  +L +  G   L+SL+   KRA ++ +     VGG + P + VDV+  ++ +    
Sbjct: 95  IVRGARLSEHLGGSTLASLIAPDKRAISVRVDDVVGVGGFLLPGNRVDVLATKTTNAGSN 154

Query: 166 TVT--VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
           + T   +L N+RV+A+D    +D+ + +V    TLE++  +A+ LV AQ+  KL L LR+
Sbjct: 155 SATSRTLLENLRVLAVDQTAGTDKTQPVVVRAVTLEMSATEAELLVTAQTEGKLQLALRN 214

Query: 223 IADL 226
             +L
Sbjct: 215 PLNL 218


>gi|56697918|ref|YP_168289.1| CpaB family protein [Ruegeria pomeroyi DSS-3]
 gi|56679655|gb|AAV96321.1| CpaB family protein [Ruegeria pomeroyi DSS-3]
          Length = 305

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 22/237 (9%)

Query: 2   KLTRLMGIVVSGVFALVAG--IIAMRLVSPHHVQTEEVITENPAK-----FINVLISKGD 54
           K+  + G+V+    AL  G  ++A   +S +     E+  E  A+        V ++   
Sbjct: 17  KMRAVFGLVLIVGIALAGGAVMMARNYISAYQ---NELARERQARAQIVPTKTVYVASRP 73

Query: 55  LAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           L  G  +T   +  V +PE  + +G F+D        QE +  ++R  + K + I   K+
Sbjct: 74  LRYGERLTKEDVRAVNWPENAIPEGTFLDAAMLFPERQEENRYVLRA-MEKDEAIMAIKV 132

Query: 114 VDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RK 164
              G + GL+S L +G RA  + + ++S V G ++P D VDV     LS         + 
Sbjct: 133 TKPGEDAGLTSQLARGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGGLSGATGPLEGMQG 192

Query: 165 PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
               ++ +NI+++AID     D     +  T T+   P Q  +L  AQ+  +L+L L
Sbjct: 193 EITRLIQTNIQIVAIDQISGGDVTGANIARTVTVAALPQQVASLAQAQTTGRLTLAL 249


>gi|209546484|ref|YP_002278402.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537728|gb|ACI57662.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 305

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 44/220 (20%)

Query: 25  RLVSPHHVQTEE---VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-F 80
           RL++ + V+ EE   ++   P +F            G  + P  L  + +P      G F
Sbjct: 33  RLLAMNGVKAEERTLIVAAKPMRF------------GDRIRPENLRAIPWPSNETPAGSF 80

Query: 81  ID-------DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAA 132
           +        D     AM  +D          G+P+   K+   G    LS+ L +G +A 
Sbjct: 81  VSIETVVGSDAQPRYAMAAID---------PGEPVLSSKITGAGERATLSAALDQGMKAV 131

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------VTVVLSNIRVIAIDHNID-- 184
           ++ ++    V G ++P+D VDV++ R +  R P       V V+L  ++V+A+D   D  
Sbjct: 132 SIRVNDVLGVAGFVRPSDRVDVLLTRVV--RGPAGNDQTFVDVLLQGVKVLAVDQTADER 189

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            DE  +V  T T E+T  +A+ L    S+  LSL LR+IA
Sbjct: 190 KDEPSVV-KTVTFEVTTDEAQRLTLGSSIGTLSLALRNIA 228


>gi|319782174|ref|YP_004141650.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168062|gb|ADV11600.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 344

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 21/253 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGM 59
           M+   L+ IV++GVF    G++A+ LV+         + +    +   V+++   L  G 
Sbjct: 1   MRANTLIMIVLAGVF----GVLAVVLVNIWLAGQRSAMAQTGVVQGSTVVVAAMPLKFGD 56

Query: 60  VVTPNILEWVAFPEENV----FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
            ++ + L  VA+P   V    F    D +    A Q L  + V  PIL        K+  
Sbjct: 57  ALSADKLREVAWPAGAVPAGAFKSTKDLLAGDGAKQALQSIGVNEPILA------TKITG 110

Query: 116 RGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----SERKPTVTVV 170
            G    LS++L +G +A ++ ++    V G + P D VD+++ R+        K  V V+
Sbjct: 111 PGQRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTARGDDGADKSFVDVL 170

Query: 171 LSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           L +++V+AID   D S +   V  + TLE +   A+ L  A    +LSL LR  A     
Sbjct: 171 LQSMKVLAIDQVADESKDSPTVVKSVTLEASTRDAQKLTLAAGAGQLSLALRQAAASKGE 230

Query: 230 SSEDSDVWDVQEE 242
           ++E   + D+  E
Sbjct: 231 TTERVTLSDLTGE 243


>gi|325108089|ref|YP_004269157.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
 gi|324968357|gb|ADY59135.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
          Length = 418

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 24/223 (10%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN----VLISKGDLAVGMVVTPNILEWV 69
            FA+  G+IAM       V  +++I +   K  N    VL++  D++ G+++      + 
Sbjct: 10  AFAVGCGLIAM-------VGVQQMIAQQSNKDQNQTVEVLVAAQDISPGVLLNQANCAFK 62

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
             P E V     D V       E  G+LV  P++ GD IR  KL  RG    S+ +P G 
Sbjct: 63  KLPVEGVPS---DAVRSKEEYAER-GLLV--PVMAGDIIRKSKLGARGEIAASASIPAGM 116

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVT-VVLSNIRVIAID--HNI 183
           R  ++ ++ +    G+++P D VD+ +   VR+    + T T ++L  I V A D   N+
Sbjct: 117 RTVSIQVNDTKTHSGLLQPGDRVDLQVTYEVRTSEGFRVTKTAILLEYIEVFASDAFRNL 176

Query: 184 DSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           ++ E + +     TL +TP QA  +  A +  +L  ++RS AD
Sbjct: 177 EAGESKEIKAKNITLLVTPDQANFIQLANTKGELVPIMRSRAD 219


>gi|188586926|ref|YP_001918471.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351613|gb|ACB85883.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 233

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 34/244 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE-----EVITENPAKFINVLISKGDLA 56
           KL +  G++VS + A+V  +I  + +S      E     E+  E+    + V+++  +L 
Sbjct: 3   KLKKYRGLLVSLILAIVTVLIIHQYISSLETAYEGTGPREIDGEDQ---VAVVVATSNLD 59

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-- 114
            G ++T + L+    PE+      + D       +E+ G      +LK D +  E L+  
Sbjct: 60  TGTILTQDHLDTRKVPEQTAHPQAVTD------KEEITG-----EVLKQDVVEHEVLMSS 108

Query: 115 ----DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------ 164
               +     LS ++P+ KRA ++ +   S V G I+  D+VDVV  +   +R+      
Sbjct: 109 RVLGEEEANKLSEVIPENKRAMSVAVDQVSGVAGFIQAGDYVDVVATKDEEDREGQEPSQ 168

Query: 165 -PTVTVVLSNIRVIAIDHNIDSDERVLVG--STATLELTPMQAKALVAAQSVAKLSLVLR 221
             +  ++L N++V+A+   I    + LV   ST TL +   +A  L  A+    + L+L+
Sbjct: 169 DSSSEIILDNLQVLAVGDRILYSRQELVQEVSTVTLAVNRNEATELTHAEEEHVIRLLLQ 228

Query: 222 SIAD 225
            I +
Sbjct: 229 PITE 232


>gi|260574617|ref|ZP_05842620.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2]
 gi|259023034|gb|EEW26327.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2]
          Length = 284

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 6/123 (4%)

Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
           K +P+   K+ + G + GL++ L KG RA  + +  +S V G + P D+VDV    + ++
Sbjct: 106 KFEPLLAVKVTEPGQDAGLTARLAKGMRAFAIKVDATSGVSGFLHPGDNVDVYWTGTAND 165

Query: 163 R---KPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
                    ++ S I++IA+D   N D     +V +T T+E +P +   L  AQ+  KL+
Sbjct: 166 AGVGGEMTRLIESTIKIIAVDQMANDDRSGSAVVAATVTVEASPEEVARLAQAQATGKLA 225

Query: 218 LVL 220
           L L
Sbjct: 226 LSL 228


>gi|115376401|ref|ZP_01463638.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1]
 gi|310822673|ref|YP_003955031.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1]
 gi|115366608|gb|EAU65606.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1]
 gi|309395745|gb|ADO73204.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1]
          Length = 270

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 12/191 (6%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
            + V+++  D+  G V++  ++   + PE+ V    +    +P++   +    V VP+  
Sbjct: 39  LVPVVVAAQDIPEGSVISFEMISQRSVPEQFVTSSVV----KPDSANYVVNQKVLVPLQA 94

Query: 105 GDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRSLSE 162
           GDP+   +    +    LS+ + K  RA T++   +++VGG I+PNDHVDV+   R    
Sbjct: 95  GDPLLWSQFETTKAAERLSTKVQKKGRAVTIEAKSTTSVGGWIRPNDHVDVIGTFRDPQT 154

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLV------GSTATLELTPMQAKALVAAQSVAKL 216
            +     +L N+ V+A      +    L+       S  +L + P +A+ LV A  +  L
Sbjct: 155 DENVAVTLLQNVIVLATGKITGTTNVNLIPENQRDYSNISLLVIPEEAEILVLASELGNL 214

Query: 217 SLVLRSIADLN 227
           +L LR+  D++
Sbjct: 215 TLSLRNEDDVD 225


>gi|254461000|ref|ZP_05074416.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium
           HTCC2083]
 gi|206677589|gb|EDZ42076.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 286

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 7/108 (6%)

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTV---VLSN 173
           GL S L  G+ A T+ +  +S V G ++P ++VDV     V++  E++ + TV   + S 
Sbjct: 121 GLQSRLEPGQSAFTIKVDSTSGVSGFLRPGNNVDVYWTGKVQANGEQRKSRTVTRLIESA 180

Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +R+IAID + + + ++  +  T T+ +T +Q  +L  AQS  +L+L L
Sbjct: 181 VRIIAIDQSANEEVKKASIARTVTVAVTQLQGASLTQAQSTGRLNLSL 228


>gi|153006806|ref|YP_001381131.1| SAF domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030379|gb|ABS28147.1| SAF domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 322

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 102 ILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
           + KG+PI   +L   G   GL+++LP G RA  + ++    V G + P D VDV++  S 
Sbjct: 113 VSKGEPILESRLAAPGTAAGLAAVLPAGMRAVAVRVNDVVGVAGFLHPGDAVDVIVTMSP 172

Query: 161 S---ERKPTVTVVLSNIRVIAIDHNIDSDERVL----VGSTATLELTPMQAKALVAAQSV 213
           S    + P   ++L N+RV+A+   ++  +R        + ATL +   Q++ L  A + 
Sbjct: 173 SGGGGQAPMSKIILQNVRVLAVGKEVERADRAFDKAIPATVATLMVDSEQSEKLALAATK 232

Query: 214 AKLSLVLRSIAD 225
            ++ L LRS AD
Sbjct: 233 GQILLSLRSGAD 244


>gi|126725968|ref|ZP_01741810.1| CpaB family protein [Rhodobacterales bacterium HTCC2150]
 gi|126705172|gb|EBA04263.1| CpaB family protein [Rhodobacterales bacterium HTCC2150]
          Length = 284

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 6/112 (5%)

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVT-VVLSNI 174
           G+++LL  G RA ++ +  ++ V G++  +DHVDV         L  R   VT ++ +N+
Sbjct: 123 GVATLLTPGMRAFSIRVDDTTGVAGLLNADDHVDVYWTGGKADGLGNRDGGVTKLIQANV 182

Query: 175 RVIAIDHNIDSDERVLVGS-TATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +++AID + D        + T T+E++P Q  +L  AQ+  KLSL L  I+D
Sbjct: 183 KLVAIDDSADKQRSSSRSARTVTVEVSPQQVASLAQAQNSGKLSLSLVGISD 234


>gi|327189766|gb|EGE56910.1| putative cpaB pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 304

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 12/129 (9%)

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           G+P+   K+   G    LS+ L +G +A ++ ++    V G ++P+D VDV++ R +  R
Sbjct: 103 GEPVLSSKITGAGERATLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVV--R 160

Query: 164 KPT------VTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAK 215
            P       V V+L  ++V+A+D   D   DE  +V  T T E+T  +A+ L    S+  
Sbjct: 161 GPEGNDQTFVDVLLQGVKVLAVDQTADERKDEPSVV-KTVTFEVTTDEAQRLTLGSSIGT 219

Query: 216 LSLVLRSIA 224
           LSL LR++A
Sbjct: 220 LSLALRNVA 228


>gi|303241713|ref|ZP_07328210.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
 gi|302590714|gb|EFL60465.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
          Length = 250

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 11/142 (7%)

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           G  ++  +++G+ I   +LV   N  L+  +P+G RA +++++  + V  +I+P D VD+
Sbjct: 83  GKRLKESVIEGEQILRSRLVQEDNFTLAYNVPEGMRAISVNVNEQTEVANLIRPGDFVDI 142

Query: 155 VMVRSLSER---KPTV------TVVLSNIRVIAI--DHNIDSDERVLVGSTATLELTPMQ 203
           +    L ++   + T+        V+ N++V+A+  D  I+ D+++ +  T TL ++P  
Sbjct: 143 IASFPLEKQDIGQNTIINLGISQTVIQNVQVLALGQDLAIEEDKKLELPKTVTLAVSPKD 202

Query: 204 AKALVAAQSVAKLSLVLRSIAD 225
           A+ L        + + LRSI D
Sbjct: 203 AEKLTFVTEFGTMRMTLRSIGD 224


>gi|260462608|ref|ZP_05810814.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
 gi|259031514|gb|EEW32784.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
          Length = 351

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 119/260 (45%), Gaps = 30/260 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH---VQTEEVITENPAKFINVLISKGDLAV 57
           M+   ++ IV++GVF ++A ++A   ++       QT EV  +       V+++   L  
Sbjct: 1   MRANTIIMIVLAGVFGVLAVVLANIWLANQRGAIAQTNEVQRDT------VVVAAVALKF 54

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQ---------PNAMQELDGVLVRVPILKGDPI 108
           G +++ + L  VA+P   V  G      +             Q L  + V  P+L     
Sbjct: 55  GDILSADKLREVAWPAGAVPAGAFKTTEELLTKDLPVGGGTKQALQSIGVNEPVLA---- 110

Query: 109 RLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----R 163
              K+   G    LS++L +G +A ++ ++    V G + P D VD+++ R++ +     
Sbjct: 111 --TKITGPGQRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTVRDDDGTD 168

Query: 164 KPTVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
           K  V V+L +++V+A+D   D S +   V  + TLE +   A+ L  A    +LSL LR 
Sbjct: 169 KSFVDVLLQSMKVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQ 228

Query: 223 IADLNPSSSEDSDVWDVQEE 242
            A     ++E   + D+  E
Sbjct: 229 AAASKGETTERITLSDLTGE 248


>gi|329900777|ref|ZP_08272581.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327549366|gb|EGF33934.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 323

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 8/194 (4%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           I V+++KGDL  G V++ + +     P E      +     P+    +DG  +   +  G
Sbjct: 52  IPVVVAKGDLNKGTVLSADNVAVRQIPREFAHSASVF----PDQFARIDGQPIAYGLKSG 107

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           + +    +  +     S+ L  G RA T+ +   +++ G+++P D +D+++      +K 
Sbjct: 108 ESVMWGLMEGKKVPTFSARLEAGHRAMTVPVDEINSISGLLEPGDSIDLIVTVDHGGKKI 167

Query: 166 TVTVVLSNIRVIAIDHNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
           T   +L  ++V+A       D R       ST TL  TP QA+ ++ A+   K++ +LR+
Sbjct: 168 TFP-LLQAVQVMATGQRAVDDPRTGERRQFSTVTLNTTPEQAQNVIVAREAGKITALLRN 226

Query: 223 IADLNPSSSEDSDV 236
            AD  P +    D+
Sbjct: 227 PADQAPMAGTRGDL 240


>gi|167836690|ref|ZP_02463573.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           MSMB43]
          Length = 351

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 30/212 (14%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL  G+++  + L W + P + V  G   +  +P    +L G L+R  + +G PI    +
Sbjct: 48  DLPEGLLLRDSDLVWKSVPRDQVPPGAWAE-GEPGG-SDLKGNLLRHMVREGTPIGAGDV 105

Query: 114 VD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVT--- 168
           +     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L +   P V    
Sbjct: 106 ISPNAPGFLAAALKLGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLGTSGGPPVPPDH 165

Query: 169 -----VVLSNIRVIAIDHNIDSDE-------------RVLVGSTATLELTPMQAKALVAA 210
                 V S +RV+A+       +                   T TLE+TP  A+A+  A
Sbjct: 166 AIVSETVASRVRVLAVGSVFQRPKDDAAQTNSNSNSNSSARARTVTLEVTPFYAQAITLA 225

Query: 211 QSVAKLSLVLRSIA--DLNPSS---SEDSDVW 237
             +  LSL LRS A  + NP+S      + VW
Sbjct: 226 SHLGSLSLALRSFAVSERNPASLAPEAPAPVW 257


>gi|225872753|ref|YP_002754210.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791215|gb|ACO31305.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum
           ATCC 51196]
          Length = 271

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 101 PILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVR 158
           P+  G PI    L   G+  G+++ +P G RA  +      AVGG I P  HVDV V  R
Sbjct: 87  PVTVGQPILSTDLAAPGSSLGITTRIPNGMRAIALHTDDVIAVGGFIFPGSHVDVLVTYR 146

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKL 216
           +    +P    VL N  V+A  H    D   +    +  TL L+P  A+  V A +   +
Sbjct: 147 NPGSPQPITATVLQNALVLATGHQTQPDPQGKPTTVNIVTLLLSPEDAERAVLASTQGTI 206

Query: 217 SLVLRSIADLNPSSSEDSDVWDV 239
             VLR+ AD        +D+ ++
Sbjct: 207 HFVLRNGADQQKGMPPPADLAEL 229


>gi|85705149|ref|ZP_01036249.1| CpaB family protein [Roseovarius sp. 217]
 gi|85670471|gb|EAQ25332.1| CpaB family protein [Roseovarius sp. 217]
          Length = 289

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 15/193 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPIL 103
           +++ ++   +  G  +T   +  +AFP++++ +G      +  P+    +   L R+   
Sbjct: 48  VDIYVANQLIKYGEPLTTEAVRLIAFPKDSLPEGAFSSTEELFPSGASVVRKALRRME-- 105

Query: 104 KGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-- 160
           K +PI   K+   G   G++S L +G RA  + + ++S V G ++P D VD+    S+  
Sbjct: 106 KNEPILAVKVTKPGEEAGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTVDIYWTGSIGA 165

Query: 161 ----SERKPT---VTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQS 212
               +E   T     ++ + +++IA+D   D D    +V  T  + +TP Q  AL  AQS
Sbjct: 166 GNLRTEEDSTGEVTKLIDTGVKLIAVDQVADMDMTEAVVARTVAVAVTPNQVAALAQAQS 225

Query: 213 VAKLSLVLRSIAD 225
             +LSL L   +D
Sbjct: 226 TGRLSLSLVGASD 238


>gi|257791505|ref|YP_003182111.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|257475402|gb|ACV55722.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
          Length = 243

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 22/198 (11%)

Query: 26  LVSPHHVQTE-EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84
            ++  +VQ+E   + EN +  +   I+   ++ G  ++P++L+ V  P   +    I D 
Sbjct: 56  FLTSSNVQSEIATLRENTSSTV---ITTTAISQGTTISPDMLKVVDIPASFLNSEAIADT 112

Query: 85  HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVG 143
                 Q+L G +    I     +    L    N   L+S L  G  A ++ +   S + 
Sbjct: 113 ------QDLVGKIALYNIAANSQVTSGMLSAMDNAATLASSLQAGNVAISIAVDSESGLS 166

Query: 144 GMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203
           G+IK ND+VD++             V++ N+RV A+D N+     V   +T TLE+ P Q
Sbjct: 167 GLIKQNDYVDIL---------GNGEVIVQNVRVAALDSNLSGS--VSQYATVTLEVAPTQ 215

Query: 204 AKALVAAQSVAKLSLVLR 221
           A A+  AQS   L  VLR
Sbjct: 216 ATAIQEAQSENPLRFVLR 233


>gi|283852072|ref|ZP_06369346.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B]
 gi|283572462|gb|EFC20448.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B]
          Length = 300

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 16/246 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  ++++ + ALVAG++ +R +       E        K I VL++   LA G  
Sbjct: 1   MKSKAIPHMILAVILALVAGVLTIRWLGSVRGTGEPGKPAAETKKIEVLVAARPLAKGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +   ++    +  E    G + D        E+ G +    I + DPI  +KL+ +G   
Sbjct: 61  LDTTMVRLKPYDPEAAPLGAMRDA------SEVVGRVTAREISQDDPITPDKLLPKGAAG 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRV 176
           GGL + +  GKRA T+  +     GG+I P   VDV+   +   +  +    V+L NI V
Sbjct: 115 GGLDASVEPGKRALTVKGTKVMGSGGLITPGCRVDVLSTYNQPGKADEKVTKVILENIPV 174

Query: 177 IAI----DHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +      +  +  D R  + +T   TL +TP +A+ L  A  +  + L LR   D +  +
Sbjct: 175 LTTGTEREVRVGQDGREELANTDFFTLMVTPEEAERLALASDLGNMHLALRKPGDDDVVA 234

Query: 231 SEDSDV 236
           +  +DV
Sbjct: 235 TAGADV 240


>gi|163745847|ref|ZP_02153206.1| CpaB family protein [Oceanibulbus indolifex HEL-45]
 gi|161380592|gb|EDQ05002.1| CpaB family protein [Oceanibulbus indolifex HEL-45]
          Length = 286

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 12/184 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDD-VHQPNAMQELDGVLVRVPILK 104
            V +++  L  G  +T   +  V +PE  + +G FI++ +  P   +  D  +V   I K
Sbjct: 49  TVWVAEKPLKYGQPLTREDVRAVNWPENAIPEGSFIEETLLFPENTK--DHRIVLRNIEK 106

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-----VMVR 158
            + I   K+ + G + GL+S L +G RA T+ + +SS V G ++P D VDV     V V 
Sbjct: 107 DEAIMAVKVTEPGEDSGLTSRLARGMRAFTIKVDVSSGVSGFLRPGDRVDVYWTGRVNVG 166

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           + S       ++ S +++IAID + D+   E   +  T T+ + P Q  AL  AQS  KL
Sbjct: 167 NQSSNGDVTKLIESAVQLIAIDQSADALVMEEASIAKTVTVAVKPQQVAALAQAQSTGKL 226

Query: 217 SLVL 220
           SL L
Sbjct: 227 SLSL 230


>gi|313902402|ref|ZP_07835805.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
 gi|313467333|gb|EFR62844.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
          Length = 236

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 12/159 (7%)

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGNG--GLSSLLPKGKRAATMDISISSAVGGMIK 147
           ++E  G + +VP+ +G+ +   KL  RG+G  GL+  LP+G RA T+      AVGG ++
Sbjct: 79  IEEAVGKVTKVPLAEGEFVLTSKLA-RGDGSDGLAYRLPEGTRALTIAADPVLAVGGFVQ 137

Query: 148 PNDHVDVVMVRSLSERKPTV-----TVVLSNIRVIAIDHNIDSD-ERVLVGST-ATLELT 200
           P D VDV++   L   KP V      +++ N+ V+A+  +  ++ E    G T  TL + 
Sbjct: 138 PGDRVDVLI--GLPGGKPGVEQPEARILVENVLVLAVQQDTAAEGEPAGDGLTHLTLAVA 195

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
           P  A A+V A+   +L L+LR   D  P+ +  + + D+
Sbjct: 196 PAHAAAIVLAEQEGRLRLLLRPAGDGRPAGAVTARLADL 234


>gi|225174960|ref|ZP_03728957.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
 gi|225169600|gb|EEG78397.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
          Length = 238

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 26/206 (12%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD---GVLVRVPIL 103
           NV+++   +     +T  +L+ V+ P         D VH P A++ +D   G + R  I+
Sbjct: 41  NVVVASSTIPAHTRITAEMLDVVSIPN--------DAVH-PEALRSVDDAAGGISRTEIV 91

Query: 104 KGDPIRLEKLV--DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +G+ +   ++V  DR    LS  +P+G RA ++ +   + V G I   D++DV++    +
Sbjct: 92  RGEQVIDARVVTEDR-RATLSYRVPEGMRAISIPVGEVTGVAGYISAGDNIDVLITYDDT 150

Query: 162 E--RKPTVTVVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           E         V  N+ V+A   N    D +E+ +VG T TL +T  QA+ L  A      
Sbjct: 151 EIHEGAITYTVFQNVNVLATGPNTREKDDEEQEVVG-TVTLSVTAAQAEVLAYALLKGNY 209

Query: 217 SLVLRSIAD-----LNPSSSEDSDVW 237
            L LRS  D     L   SSE+ + +
Sbjct: 210 HLTLRSPLDEDEVELESYSSENFETF 235


>gi|13475418|ref|NP_106982.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
 gi|14026170|dbj|BAB52768.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
          Length = 354

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 24/257 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ IV++GVF ++A ++A   ++    Q   +   N  +   V+++   L  G  
Sbjct: 1   MRANTVIMIVLAGVFGVLAVVLANIWLAN---QRSAIAQTNDIQRDTVVVAAVALKFGDT 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQ-------PNAM--QELDGVLVRVPILKGDPIRLE 111
           ++ + L  VA+P   V  G      +       P A   Q L  + V  P+L        
Sbjct: 58  LSADKLREVAWPAGAVPAGAFKTTEELLTKDVLPGAAPKQALQAIGVNEPVLA------T 111

Query: 112 KLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----RKPT 166
           K+   G    LS++L +G +A ++ ++    V G + P D VDV++ R++       +  
Sbjct: 112 KITGPGQRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDVLLTRTVRSDDGADQSF 171

Query: 167 VTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V V+L  +RV+A+D   D S +   V  + TLE +   A+ L  A    +LSL LR  A 
Sbjct: 172 VDVLLQGMRVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAA 231

Query: 226 LNPSSSEDSDVWDVQEE 242
               ++E   + D+  E
Sbjct: 232 SKGETTERVTLSDLTGE 248


>gi|116623254|ref|YP_825410.1| SAF domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226416|gb|ABJ85125.1| SAF domain [Candidatus Solibacter usitatus Ellin6076]
          Length = 300

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 9/152 (5%)

Query: 82  DDVHQPNAMQELDGVLVRVPILKG----DPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136
           +DV    A   ++ VL R P++      +P+   +L  +G+G GL  ++P G RA ++ +
Sbjct: 68  EDVFPAGAFSRVEDVLER-PVISAIQPEEPVVEARLAVKGSGAGLGPMIPTGMRAISVRV 126

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNIDSDERV--LVGS 193
           +    V G + P   VDV++      R  T T  VL NI V++    I +D R   ++  
Sbjct: 127 NDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQTVLQNITVLSAGQTITTDGRSQPIMAP 186

Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             TL +TP +A+AL  A +   + LVLR+  D
Sbjct: 187 VVTLLVTPGEAEALTLANTEGHIQLVLRNSTD 218


>gi|108759025|ref|YP_632818.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK
           1622]
 gi|108462905|gb|ABF88090.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK
           1622]
          Length = 271

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 16/193 (8%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
            + V+++  D+  G V+T  ++   + PE+ V    +    +P++   +    V V +  
Sbjct: 39  LVPVVVAAQDVPEGTVITFEMISQRSVPEQFVTSSVV----RPDSASYIVNQKVLVALQA 94

Query: 105 GDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRSLSE 162
           GDP+   +    +    LSS + K  RA T++   +++VGG I+PNDHVDV+   R    
Sbjct: 95  GDPLLWSQFETTKAAERLSSKVQKKARALTIEAKHTTSVGGWIRPNDHVDVIGTFRDPQT 154

Query: 163 RKPTVTVVLSNIRVIAID--------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
            +     +L N+ V+A          + I  ++R    +  +L + P +A+ LV A  + 
Sbjct: 155 DENVAVTLLQNVIVVATGKITGTTNVNLIPENQREY--NNISLMVLPEEAEILVLAVELG 212

Query: 215 KLSLVLRSIADLN 227
           +L+L LR+  D++
Sbjct: 213 QLTLSLRNEDDVD 225


>gi|32473552|ref|NP_866546.1| pilus assembly protein CpaB [Rhodopirellula baltica SH 1]
 gi|32398232|emb|CAD78327.1| probable pilus assembly protein CpaB [Rhodopirellula baltica SH 1]
          Length = 403

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           +++++G   R    +G+P+   KL+   NG  S  +P G    +M     S+V  +++P 
Sbjct: 106 LEDVEGKFARQRFYEGEPVMPVKLMADANGS-SQTIPVGFSVVSMRADPESSVATLVRPG 164

Query: 150 DHVDVVMVRSLSERKP--TVTVVLSNIRVIAID----HNIDSDERVLVGSTATLELTPMQ 203
           D VDV+     SE  P  T   VL+ +RV A+D      +DS+       + +L +    
Sbjct: 165 DRVDVMAYFVKSELIPETTAKTVLTGVRVFAVDGRTEREVDSEAEAKPARSISLLIHKKD 224

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
             A   A  + K+ L L + +D+N +   ++D
Sbjct: 225 TPAWTYASELGKIRLTLGNPSDINETKDGETD 256


>gi|327540753|gb|EGF27320.1| Pilus assembly, Flp-type CpaB [Rhodopirellula baltica WH47]
          Length = 403

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           +++++G   R    +G+P+   KL+   NG  S  +P G    +M     S+V  +++P 
Sbjct: 106 LEDVEGKFARQRFYEGEPVMPVKLMADANGS-SQTIPVGFSVVSMRADPESSVATLVRPG 164

Query: 150 DHVDVVMVRSLSERKP--TVTVVLSNIRVIAID----HNIDSDERVLVGSTATLELTPMQ 203
           D VDV+     SE  P  T   VL+ +RV A+D      +DS+       + +L +    
Sbjct: 165 DRVDVMAYFVKSELIPETTAKTVLTGVRVFAVDGRTEREVDSEAEAKPARSISLLIHKKD 224

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
             A   A  + K+ L L + +D+N +   ++D
Sbjct: 225 TPAWTYASELGKIRLTLGNPSDINETKDGETD 256


>gi|126461332|ref|YP_001042446.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126102996|gb|ABN75674.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 274

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           L  G RA  + + ++S V G ++P D VDV    S S  + T  ++   I ++A+D   +
Sbjct: 125 LASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGE-TTRLIEKTIPIVAVDQTAN 183

Query: 185 SD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +D     ++  T T+E++P Q   L  AQ+  +LSL L
Sbjct: 184 ADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSL 221


>gi|283779854|ref|YP_003370609.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
 gi|283438307|gb|ADB16749.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
          Length = 372

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 15/201 (7%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            +L++  D+ +   +    ++   +P+  V +G +       ++ E++    +    KG+
Sbjct: 42  QILVALADIDIDAKLNAENVQLEEWPKSKVPEGAV------RSLDEVEAKFAQQRFFKGE 95

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKP 165
           PI L K+ D+ N      +P+G R   + +   + +   I P D VDV V +R   E K 
Sbjct: 96  PILLAKISDQ-NVNPMIRIPEGYRVMPVKVDDETVLKA-ISPGDRVDVMVFLRRSEEIKQ 153

Query: 166 TVT-VVLSNIRVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           T T  +L N+RV A++ N + D       +   T +L + P Q++ L  A  + K+ L +
Sbjct: 154 TATYTILRNVRVFAVNSNTERDLETKGQDVNARTVSLIIKPQQSRELAVASQIGKIILTM 213

Query: 221 RSIADLNPSSSEDSDVWDVQE 241
           R   D    + E  DV  + E
Sbjct: 214 RR-PDETDEAGEGEDVTPITE 233


>gi|284048527|ref|YP_003398866.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM
           20731]
 gi|283952748|gb|ADB47551.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM
           20731]
          Length = 339

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 34/195 (17%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           D+A   V+T  +L+ V  P   V  G + D  Q  A+ +  G+     +  GD +   KL
Sbjct: 76  DIAPQTVLTEEMLKTVEVPANLVPAGALTDKKQ--ALGKKTGI----DLFAGDILTERKL 129

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
              G GG   ++P G RA +  ++  + V G  KP D VD+++V            +L +
Sbjct: 130 TSHG-GGFVGMIPDGMRAVSFGVNDVTGVSGFAKPGDKVDILLVTDKEGNGIVSKTLLKD 188

Query: 174 IRVIAIDHNID----------SDERVLV---------GSTA--------TLELTPMQAKA 206
           + ++A++ + D          SD++ L          GST         T+ LTP  A  
Sbjct: 189 VLILAVNKSSDRPQGTTQTSGSDKKTLTSGSQPAGNSGSTGSMGTPSVVTVALTPYDAAK 248

Query: 207 LVAAQSVAKLSLVLR 221
           L+ +  + +L ++LR
Sbjct: 249 LIGSSRIGQLQMMLR 263


>gi|77462454|ref|YP_351958.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           2.4.1]
 gi|221638317|ref|YP_002524579.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides KD131]
 gi|332560338|ref|ZP_08414660.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N]
 gi|77386872|gb|ABA78057.1| Putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           2.4.1]
 gi|221159098|gb|ACM00078.1| Flp pilus assembly protein CpaB precursor [Rhodobacter sphaeroides
           KD131]
 gi|332278050|gb|EGJ23365.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N]
          Length = 274

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           L  G RA  + + ++S V G ++P D VDV    S S  + T  ++   I ++A+D   +
Sbjct: 125 LASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGE-TTRLIEKTIPIVAVDQTAN 183

Query: 185 SD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +D     ++  T T+E++P Q   L  AQ+  +LSL L
Sbjct: 184 ADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSL 221


>gi|113867003|ref|YP_725492.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
 gi|113525779|emb|CAJ92124.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
          Length = 343

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 40/214 (18%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
           N  + + V++   + A G V+  N       P + V++    D+   ++  ++  + +  
Sbjct: 52  NEGRRVAVMVPVRNAAPGTVIDGNGFAAREIPADLVYE----DMILASSFDKVANLRLVR 107

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            + +G P+R   +    +   S LL  GKRA T+++ + ++   M+KP +HVD+ ++ S 
Sbjct: 108 QVRQGQPVRRADVEALQSRDFSDLLKPGKRAFTIEVDMVNSTAKMLKPGNHVDLFLISST 167

Query: 161 SER-----KPTVTVVLSNIRVIA------------------------IDHNIDSDERVLV 191
           S       K T  +++S++ V+A                        +D N D D     
Sbjct: 168 SPTAAGTDKQTARLLMSDMLVLATGQDVRPRDYGEAMAAQAAEGAEGVDTNPDYD----- 222

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             + TL ++P QA  L  AQ V  L  VLR+ AD
Sbjct: 223 --SLTLMVSPEQAARLALAQKVGSLRAVLRNAAD 254


>gi|261856885|ref|YP_003264168.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2]
 gi|261837354|gb|ACX97121.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2]
          Length = 258

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 107/222 (48%), Gaps = 13/222 (5%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
            + + V+ +   +A ++A++ ++   V T    T  P K   V++   +L VG V++   
Sbjct: 8   FLYVAVAVLLGGLASVLAVKYIN-QQVATR-THTAAPQKMRTVVVPVHNLKVGDVLSAKD 65

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
           L     P   V      D   P+  +   G ++  P+ +G PI    +    N   S ++
Sbjct: 66  LATRDIPVAYV----PADALTPDDYESHLGQMLTTPLAQGAPISAMAMEPIANH-FSDII 120

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI-- 183
              + A T+D+S ++++ G+I P DH+D++++ S    K  +  +LS++ V+A   +   
Sbjct: 121 KPDRVAYTIDVSETNSISGLIVPGDHIDILLLLS-KNSKDDIRPLLSDVLVLATGKHAKG 179

Query: 184 ---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
              D  E     S  TLELTP  A+ +  A+ + +L ++LRS
Sbjct: 180 VRSDGTEGNQGYSNLTLELTPKNAQRIGIAKKMGQLLVMLRS 221


>gi|319943381|ref|ZP_08017663.1| SAF domain protein [Lautropia mirabilis ATCC 51599]
 gi|319743196|gb|EFV95601.1| SAF domain protein [Lautropia mirabilis ATCC 51599]
          Length = 339

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 32/267 (11%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTE-EVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++ G  A+ AG    R V+   VQ E E +     + ++V+++   L  G +V+   +  
Sbjct: 22  MLCGGVAIYAG---SRYVN-EQVQAERERLAPVAQQMVDVVVANATLDKGEIVSGETMAI 77

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
            + P E V    +     P     L G  + +P+  G+ +    +        SS +  G
Sbjct: 78  RSVPAEYVSSSVVT----PEQFDALVGQRLLLPMRPGEMLSTAAVSSAEQLVFSSRVKPG 133

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----------VVLSNIRVI 177
            RA T+ +   +++ GM++P D +D++    L+ R P+ +            +L N+ V+
Sbjct: 134 IRALTISVDEINSISGMLQPGDRIDLL----LTARPPSASGHGEAEHDATVPLLQNLLVM 189

Query: 178 AIDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           A    +      + D+R    S+ T+E+TP QA+ L+ AQ   +L+ VLR+  D  P  +
Sbjct: 190 ATGRQVRPGANDNGDDRSF--SSVTVEVTPSQAQRLIVAQRAGRLTAVLRNPDDGMPMDA 247

Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKD 258
              D+  +  +     +    V+  +D
Sbjct: 248 AAVDLRSLFPQPARPAVAPRKVVARQD 274


>gi|220918103|ref|YP_002493407.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955957|gb|ACL66341.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 309

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++++ D+ V   + P  L  V +P   +  G      +P A   L G +  VPI +G+
Sbjct: 59  GVVVAQVDIPVATPIKPEWLGVVPWPVTALPPG---AASEPAA---LVGQVAIVPITRGE 112

Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            +   KL   G   GL++LLP G RA  + +     V G + P D VDV++     E  P
Sbjct: 113 AVLPSKLATAGARSGLATLLPAGMRAVAVRVDDVVGVAGFLHPGDRVDVIVTMQPREGVP 172

Query: 166 -TVTVVLSNIRVIAIDHNID----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            T  +VL N++V+A+  +++      E+    + ATL +T  +++ L  + S  +L L L
Sbjct: 173 YTSKIVLQNVKVLAVGQHLELRGKDAEKPNPVTVATLMVTGDESERLALSASKGQLLLSL 232

Query: 221 RSIAD 225
           R++ D
Sbjct: 233 RALGD 237


>gi|254466356|ref|ZP_05079767.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I]
 gi|206687264|gb|EDZ47746.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I]
          Length = 285

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 94/189 (49%), Gaps = 11/189 (5%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG---FIDDVHQPNAMQELDGVLVRVPI 102
           ++V ++   L  G  ++ + +  V +PE  + +G    +D +  P +  +L  V++R  +
Sbjct: 48  VDVFVATKPLKYGERLSQDAVRAVRWPENAIPEGAYTTLDALFPPQSGDKLR-VVLRA-M 105

Query: 103 LKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV----VMV 157
            K + +   K+   G + G++S L +G RA  + + +SS V G ++P D VDV    +M 
Sbjct: 106 EKDEAVMAVKVTAPGEDAGITSRLQRGMRAFAIKVDVSSGVSGFLRPGDKVDVYWTGMMP 165

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKL 216
            +   R     ++ +N+ ++A+D +   D    ++  T T+   P Q  AL  AQ+  +L
Sbjct: 166 GAGGSRGEVTRLIETNVELVAVDQSAGGDINEAIIARTVTVAAKPAQVAALAQAQTTGRL 225

Query: 217 SLVLRSIAD 225
           SL L    D
Sbjct: 226 SLALVGAGD 234


>gi|149915643|ref|ZP_01904169.1| CpaB family protein [Roseobacter sp. AzwK-3b]
 gi|149810535|gb|EDM70378.1| CpaB family protein [Roseobacter sp. AzwK-3b]
          Length = 290

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 16/189 (8%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FID-DVHQPNAMQELDGVLVRVPIL 103
           + VL++K  L  G  + P+ +  V FP++ + +G F+  D   P   QE   V  R  + 
Sbjct: 48  VEVLVAKTPLKYGQKLKPDAVRLVKFPKDALPEGVFMTMDALFPKGEQEPRAV--RRAME 105

Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------ 156
             + I   K+   G + G+SS L +G RA  + + ++S V G ++P D VDV        
Sbjct: 106 VNEAIMAVKVTAPGEDAGISSQLAQGMRAFAIKVDVASGVSGFLRPGDRVDVYWTGQVRG 165

Query: 157 ---VRSLSERKPTVT-VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQ 211
              VR+       VT ++ + +++IA+D   D +  + ++  T T+   P Q  AL  AQ
Sbjct: 166 GSDVRTEGNSMGDVTKLIETGVQLIAVDQISDENTTQAIIARTVTVAARPQQVAALAQAQ 225

Query: 212 SVAKLSLVL 220
           +  +LSL L
Sbjct: 226 ATGRLSLSL 234


>gi|319940439|ref|ZP_08014784.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806065|gb|EFW02814.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis
           3_1_45B]
          Length = 321

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 35/166 (21%)

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L G  VR  + +G+ I  + ++  GN G L+++L  GKRA ++  S  S+  G++   D 
Sbjct: 102 LMGATVRRSVPQGELITQDDVLYPGNPGFLAAVLSPGKRAVSIPTSAVSSNSGLVSAGDW 161

Query: 152 VDVVMV--RSLSE------------RKPTVTVVLSNIRVIAIDHNIDS------------ 185
           VDV++   R  +E             K     +L+N+RV+A++++ +S            
Sbjct: 162 VDVILTLKRETAEAMADQQDKTSGMTKLAAQTILTNVRVLALNNSTESIAPQPETAPQKT 221

Query: 186 DERVLVGSTA--------TLELTPMQAKALVAAQSVAKLSLVLRSI 223
           D +    + A        TLE+TPM+A+AL  A+    L + +R +
Sbjct: 222 DAKKTASTAARRVDYRTITLEVTPMEAQALAVAKEAGDLQVSIRGL 267


>gi|146276365|ref|YP_001166524.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554606|gb|ABP69219.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 274

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 6/120 (5%)

Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
           K +P+   K+ + G   GL   L  G RA  + + ++S V G ++P D VDV    + + 
Sbjct: 105 KFEPVLAVKVTEPGVEAGLR--LASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGAGAN 162

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            + T  ++   I ++A+D   ++D     ++  T T+E++P Q   L  AQ+  +LSL L
Sbjct: 163 GE-TTRLIEKTIPIVAVDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSL 221


>gi|330819175|ref|YP_004348037.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3]
 gi|327371170|gb|AEA62525.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3]
          Length = 354

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 36/246 (14%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV-ITENPAKFINVLISKGDLAVGMVVTPN 64
           L+GI V+    +        LVS   ++ E     E P   ++V++ + D+  G  +   
Sbjct: 18  LIGIAVAAAGGITWVTYRYMLVSEARIKAEAAERREGPG--VSVVVPRADVPAGTPLDSA 75

Query: 65  ILEWVAFPEENVFDGFI---DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           +        + V+D  +   D  H  NA      VLV+ P+ +G P+RL+ +        
Sbjct: 76  VFVAREISADLVYDDMLQVDDFTHHRNA------VLVK-PVRRGRPLRLQDVDATRARDF 128

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------ERKPTVTVVLS 172
           S  L  G RA T+ I   ++   M++P + VD+  V +LS             ++ +++ 
Sbjct: 129 SDTLAAGMRALTLPIDAINSTDSMLRPGNRVDLYWVGTLSFVTRGGDPAGDTKSIRLLMP 188

Query: 173 NIRVIAIDHNI-------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            +RV+A  H++             D   R   G T TL++   +A  +  AQ +  L LV
Sbjct: 189 GVRVLATGHDVRPRDAGEAARDMADGARRDGYG-TVTLQVPVAEAARIALAQKLGGLRLV 247

Query: 220 LRSIAD 225
           LR+  D
Sbjct: 248 LRNSKD 253


>gi|302343420|ref|YP_003807949.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075]
 gi|301640033|gb|ADK85355.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075]
          Length = 279

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 15/206 (7%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89
           H  Q E    E   +   ++++  DL  G+ ++   L    +P E    G         A
Sbjct: 32  HKAQQE---AERRVRTAPLVVAAVDLPAGLELSAGRLAVAQWPVEARPPGHF------GA 82

Query: 90  MQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
           ++ L G +++ P++KG+P+   KL  +    GL++ +  G RA T+       V G +K 
Sbjct: 83  VKPLLGRVLQQPVVKGEPLLAGKLSPEGAAAGLAAAIKPGWRAVTISADEVVGVAGYLKV 142

Query: 149 NDHVDVV-MVRSLSERKPTVT-VVLSNIRVIAIDHNIDSDER---VLVGSTATLELTPMQ 203
            D VDV+  V+ L + K  V  + L ++ V+A+ H  + D +    L G   TL   P  
Sbjct: 143 GDRVDVIATVKGLDQGKEAVARLALQDLEVLAVSHQAEQDGKKPPKLKGQVLTLLARPAD 202

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPS 229
           A+ L  A    K+ L LR+  D  P+
Sbjct: 203 AERLALAAGEGKILLALRNRQDRQPA 228


>gi|84687278|ref|ZP_01015158.1| CpaB family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664711|gb|EAQ11195.1| CpaB family protein [Rhodobacterales bacterium HTCC2654]
          Length = 274

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 10/182 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPILK 104
            + + K  +A G  +T   +    FP + + +G      +  P   +    VL    + K
Sbjct: 39  EIYVVKESVAYGDRITDENIRLTRFPVDAIPEGAFKTEEELFPQGEKRYRTVLR--AMEK 96

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSE 162
            + +   K+ + G + G+++ L  G RA  + + ++S V G ++P D VD+    R  S+
Sbjct: 97  DEALLAVKVTEAGADAGVAARLASGMRAFAIRVDVASGVSGFLRPGDKVDIYWTGRGSSD 156

Query: 163 ---RKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSL 218
               +    ++ +NIR+IAID   D+D     V  T T+E TP Q  AL  AQ+  +++L
Sbjct: 157 SVTSQEVTKLIQTNIRIIAIDQMADTDRTAPTVARTVTIEATPEQVAALAQAQATGRMAL 216

Query: 219 VL 220
            L
Sbjct: 217 SL 218


>gi|152994346|ref|YP_001339181.1| SAF domain-containing protein [Marinomonas sp. MWYL1]
 gi|150835270|gb|ABR69246.1| SAF domain protein [Marinomonas sp. MWYL1]
          Length = 309

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 33/208 (15%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           F  VL +  DL  G  +  + ++W+A  ++      F+  V Q +A+    G  VR P+ 
Sbjct: 47  FTPVLAASKDLVPGDFIDNSAVQWLAVDKQYESHSYFLKGVDQVDAVF---GATVREPVA 103

Query: 104 KGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------ 156
           KGD +    +V  G+ G  +S+L  G RA  +     ++  G++   D VDVV+      
Sbjct: 104 KGDVLGSRVVVLPGDAGFIASVLESGMRAVAIPADAVTSNAGLVSAGDRVDVVLGLKRDQ 163

Query: 157 --------VRSLSERKPTVTVVLSNIRVIAIDHNID-------------SDERVLVGSTA 195
                   + S+   K     +L N+RV+A++  ++             + +R     T 
Sbjct: 164 ENGGEADPMASIELPKLASQTLLRNVRVLALNDAVEEMAKEKPTEEKSGAKKRKFY-ETV 222

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSI 223
           TLE+ P   + L  A+ +  L L LRS+
Sbjct: 223 TLEVFPKDVERLTVAREIGVLQLALRSV 250


>gi|167581962|ref|ZP_02374836.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           TXDOH]
          Length = 269

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 39/253 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  IA     P            P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYIAASQPRP----------AAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDD--------------VHQPNAMQELDGVLVRVPILKGD 106
           +    L W      +V  G + +                   A  +L G L+R P+ +G 
Sbjct: 55  LRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGM 114

Query: 107 PI-RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161
           P+   + ++    G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L+    
Sbjct: 115 PLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGG 174

Query: 162 -----ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQ 211
                ER      + + +RV+A+         D+ +      T T E++   A+ +    
Sbjct: 175 APADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGA 234

Query: 212 SVAKLSLVLRSIA 224
            +  LSL LRS A
Sbjct: 235 HLGALSLALRSFA 247


>gi|255658703|ref|ZP_05404112.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544]
 gi|260849090|gb|EEX69097.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544]
          Length = 358

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 49/276 (17%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K+T    +V +GV +++ G++    +S    +  E    N    + V+ +K D+    VV
Sbjct: 17  KITYRQWVVAAGVVSILLGLMVYLAMSGDDQKAAEKPQTN---LVQVVAAKQDIPERTVV 73

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGG 120
             ++L+ V  P E V +G   DV   +A+       ++    +GD +   K+ VD    G
Sbjct: 74  KEDMLKVVEVPSELVPEGAFHDVA--DAIDHPTSTAIQ----QGDIMTSRKVYVDIRMAG 127

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
            + ++P   RA T+ I+  + V G   P D+VD++++    E      ++L ++ ++ I+
Sbjct: 128 FTGIIPPDCRAVTIPINDVTGVSGFAHPGDYVDIMVITGTKENGINGRIILQDVLLLGIN 187

Query: 181 HNID----------------SDER------VLVGS-----------TATLELTPMQAKAL 207
              D                SD++        VGS           TAT+ L P  A  L
Sbjct: 188 RTADLPNTPTGDSSKKDGSQSDKQDASSGTANVGSVNTKASSDTMATATVALKPADALKL 247

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
            A      L LVLR      P    D   +D    G
Sbjct: 248 AAESQEGTLYLVLR------PFKPRDMYTFDTDYAG 277


>gi|294102190|ref|YP_003554048.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM
           12261]
 gi|293617170|gb|ADE57324.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM
           12261]
          Length = 288

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 110/222 (49%), Gaps = 19/222 (8%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++VS +  ++AG++  + +  + ++    I     + ++V+++        ++T   ++ 
Sbjct: 8   LIVSLLLGIMAGLLVYQQIRSYKLK----IARAERELVSVVVAARPKDAFSIITAEDVKV 63

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPK 127
           V  P  ++  G +       ++ E+ G    + + +GDP+   KL +D    G++  LP 
Sbjct: 64  VRMPRSSIPTGEV------LSLDEVVGKASMLALSEGDPVLKGKLSLDPEKLGVAFQLPD 117

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAIDHNID-- 184
           G+ A  + I    A GG+++P D+VDV  V R      PT  ++LS ++V+A+   +   
Sbjct: 118 GRVAIALPIDEVIAAGGLLRPGDYVDVFHVYREKDAVSPTSRLLLSRVKVLALGGVLTRK 177

Query: 185 -----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
                + E+ ++  +A +E++P +A     AQS+  + L LR
Sbjct: 178 EEKEGTKEKEMLARSAVVEVSPEEAAVAAWAQSLGSVWLALR 219


>gi|83721444|ref|YP_442981.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
 gi|257139205|ref|ZP_05587467.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
 gi|83655269|gb|ABC39332.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           E264]
          Length = 345

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 39/253 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDD--------------VHQPNAMQELDGVLVRVPILKGD 106
           +    L W      +V  G + +                   A  +L G L+R P+ +G 
Sbjct: 55  LRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGM 114

Query: 107 PI-RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161
           P+   + ++    G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L+    
Sbjct: 115 PLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGG 174

Query: 162 -----ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQ 211
                ER      + + +RV+A+         D+ +      T T E++   A+ +    
Sbjct: 175 APADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGA 234

Query: 212 SVAKLSLVLRSIA 224
            +  LSL LRS A
Sbjct: 235 HLGALSLALRSFA 247


>gi|167902789|ref|ZP_02489994.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei NCTC
           13177]
          Length = 279

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100
           +    L W      A P   + +G                     +P    +L G L+R 
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112

Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + 
Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172

Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205
           L+         +R      + + +RV+A+         D+ +      T T E++   A+
Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232

Query: 206 ALVAAQSVAKLSLVLRSIA 224
            +     +  LSL LRS A
Sbjct: 233 VITVGAHLGALSLALRSFA 251


>gi|167919050|ref|ZP_02506141.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei BCC215]
          Length = 275

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100
           +    L W      A P   + +G                     +P    +L G L+R 
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112

Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + 
Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172

Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205
           L+         +R      + + +RV+A+         D+ +      T T E++   A+
Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232

Query: 206 ALVAAQSVAKLSLVLRSIA 224
            +     +  LSL LRS A
Sbjct: 233 VITVGAHLGALSLALRSFA 251


>gi|254197384|ref|ZP_04903806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|169654125|gb|EDS86818.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
          Length = 350

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLASLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100
           +    L W      A P   + +G                     +P    +L G L+R 
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112

Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + 
Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172

Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205
           L+         +R      + + +RV+A+         D+ +      T T E++   A+
Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232

Query: 206 ALVAAQSVAKLSLVLRSIA 224
            +     +  LSL LRS A
Sbjct: 233 VITVGAHLGALSLALRSFA 251


>gi|242315438|ref|ZP_04814454.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|242138677|gb|EES25079.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
          Length = 366

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100
           +    L W      A P   + +G                     +P    +L G L+R 
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112

Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + 
Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172

Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205
           L+         +R      + + +RV+A+         D+ +      T T E++   A+
Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232

Query: 206 ALVAAQSVAKLSLVLRSIA 224
            +     +  LSL LRS A
Sbjct: 233 VITVGAHLGALSLALRSFA 251


>gi|217421311|ref|ZP_03452815.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|237812164|ref|YP_002896615.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|217395053|gb|EEC35071.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|237502713|gb|ACQ95031.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
          Length = 350

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100
           +    L W      A P   + +G                     +P    +L G L+R 
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112

Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + 
Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172

Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205
           L+         +R      + + +RV+A+         D+ +      T T E++   A+
Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232

Query: 206 ALVAAQSVAKLSLVLRSIA 224
            +     +  LSL LRS A
Sbjct: 233 VITVGAHLGALSLALRSFA 251


>gi|76810999|ref|YP_333434.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei
           1710b]
 gi|126438737|ref|YP_001058907.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|134282270|ref|ZP_01768975.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|226196386|ref|ZP_03791968.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|254179873|ref|ZP_04886472.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|254188721|ref|ZP_04895232.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254258897|ref|ZP_04949951.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
 gi|76580452|gb|ABA49927.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           1710b]
 gi|126218230|gb|ABN81736.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|134246308|gb|EBA46397.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|157936400|gb|EDO92070.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184210413|gb|EDU07456.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|225931603|gb|EEH27608.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|254217586|gb|EET06970.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
          Length = 350

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100
           +    L W      A P   + +G                     +P    +L G L+R 
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112

Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + 
Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172

Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205
           L+         +R      + + +RV+A+         D+ +      T T E++   A+
Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232

Query: 206 ALVAAQSVAKLSLVLRSIA 224
            +     +  LSL LRS A
Sbjct: 233 VITVGAHLGALSLALRSFA 251


>gi|121599044|ref|YP_993007.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1]
 gi|124386572|ref|YP_001026339.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229]
 gi|126449623|ref|YP_001080387.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247]
 gi|254177864|ref|ZP_04884519.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC
           10399]
 gi|254358541|ref|ZP_04974814.1| Flp pilus assembly protein CpaB family [Burkholderia mallei
           2002721280]
 gi|121227854|gb|ABM50372.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1]
 gi|124294592|gb|ABN03861.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229]
 gi|126242493|gb|ABO05586.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247]
 gi|148027668|gb|EDK85689.1| Flp pilus assembly protein CpaB family [Burkholderia mallei
           2002721280]
 gi|160698903|gb|EDP88873.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC
           10399]
          Length = 350

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100
           +    L W      A P   + +G                     +P    +L G L+R 
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112

Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + 
Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172

Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205
           L+         +R      + + +RV+A+         D+ +      T T E++   A+
Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232

Query: 206 ALVAAQSVAKLSLVLRSIA 224
            +     +  LSL LRS A
Sbjct: 233 VITVGAHLGALSLALRSFA 251


>gi|149178506|ref|ZP_01857094.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797]
 gi|148842621|gb|EDL56996.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797]
          Length = 324

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 14/226 (6%)

Query: 10  VVSGVFALVAGIIAMRLVSP--HHVQTEEVITENPA---KFINVLISKGDLAVGMVVTPN 64
           + + +FA++ G+ A   V    H      V+ E+P    K I + I+  DL  G  ++ +
Sbjct: 1   MTAAIFAILLGLGAAYTVRQFLHEKPKPFVLAEDPPAGPKKIVLPIASRDLVPGQKLSLD 60

Query: 65  ILEWVAFPEE---NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
            +  +    E     +D   +   +    Q + G  ++  I  G P     L   G G G
Sbjct: 61  DISLLQISPELLSKRYDADSEGKQRIMMTQYIAGRTLKTAIKAGQPFHTIDLFANGMGPG 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAI 179
           +S +L  G RA T+ I     V G  +P   VDV+     ++  P  T+ +L  +RV+A+
Sbjct: 121 ISEILEPGNRAVTVAIHKIGNVAGFSRPGTIVDVLFRSKETDGIPETTITLLEKVRVLAV 180

Query: 180 DHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLR 221
                   +V  G       TLE++P Q K L   +    LSL LR
Sbjct: 181 GDQAVPGHKVGEGGGMDHPVTLEVSPEQGKVLKVVEDHGILSLALR 226


>gi|126452162|ref|YP_001066149.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|126225804|gb|ABN89344.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
          Length = 350

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100
           +    L W      A P   + +G                     +P    +L G L+R 
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112

Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + 
Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172

Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205
           L+         +R      + + +RV+A+         D+ +      T T E++   A+
Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232

Query: 206 ALVAAQSVAKLSLVLRSIA 224
            +     +  LSL LRS A
Sbjct: 233 VITVGAHLGALSLALRSFA 251


>gi|258627505|ref|ZP_05722286.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603]
 gi|258580311|gb|EEW05279.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603]
          Length = 112

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKA 206
           P + VDV+   S S+       VL +I+V+A+D    S E + ++    TLE+TP QA+ 
Sbjct: 3   PGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVTPEQAEK 62

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSED 233
           L++AQS  ++ L LR     NP   E+
Sbjct: 63  LLSAQSKGEIQLTLR-----NPHEPEE 84


>gi|251789645|ref|YP_003004366.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591]
 gi|247538266|gb|ACT06887.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591]
          Length = 308

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 114/269 (42%), Gaps = 52/269 (19%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + ++ +GV AL   I+  +L      Q        P +   VL++  DL+ G  +  + +
Sbjct: 11  VALIAAGVMAL---IVRSQLPGTPAAQQTPAPAPIPVEKTAVLVTARDLSPGDFIDGSAV 67

Query: 67  EWVAF--PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GGLS 122
            W     P    F  FI    Q +   +L G  +R  I  G P+    +V R N  G ++
Sbjct: 68  RWQETDQPVSRTFY-FIRGKDQES---QLYGATLRGKIPAGTPLNNNSVV-RPNEPGFIA 122

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPT-----------VT 168
           ++L  G RA ++  S+ ++  G++   D+VD+++     +    +PT             
Sbjct: 123 AVLRPGMRAISIPTSVVASNAGLVSAGDYVDIILSLRRDDEVALQPTSQQPVPPPVVGAQ 182

Query: 169 VVLSNIRVIAIDHNIDS----------------------DERVLVGSTATLELTPMQAKA 206
            V  N+RV+A+++  D+                       +R  +  + TLE TP QA+ 
Sbjct: 183 TVARNLRVLALNNQTDAITSMRPRQDINGAEPAQNTPQGRQRTPIYQSITLEATPKQAEV 242

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           L  A+ V  L +  RS  D    +S+D++
Sbjct: 243 LTVAKEVGLLQMAQRSALD----TSDDAE 267


>gi|301165541|emb|CBW25112.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
          Length = 271

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 7/142 (4%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            AL+  + AM +V  +    +  I +   K  +V+I+K D+    ++  + +   + P  
Sbjct: 8   LALIIAVFAMFMVYTYIDDEKTKIIKKYGKEQSVVIAKVDIKELELIDDSKVTVTSMPSN 67

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAAT 133
            V +           ++E+   +  VPILKG+ I   ++       GLS  +  GKRA +
Sbjct: 68  FVHEKAF------KTIKEIQNTVATVPILKGEQITKPRVSWPDERSGLSRQVAVGKRAIS 121

Query: 134 MDISISSAVGGMIKPNDHVDVV 155
           +D+S  ++VG +IKP D VD++
Sbjct: 122 LDVSERASVGKLIKPGDRVDIL 143


>gi|254441777|ref|ZP_05055270.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307]
 gi|198251855|gb|EDY76170.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307]
          Length = 286

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 106 DPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VR 158
           +PI   K+   G  GG+++LL +G RA T+++ +SS V G + P D VDV        + 
Sbjct: 108 EPILATKVTAPGEVGGITALLARGMRAFTIEVDVSSGVSGFLNPGDRVDVYWTGRVNGID 167

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLS 217
             +       ++ + I ++AID   +S      +  T T+++TP Q  AL  AQ+   LS
Sbjct: 168 GANTNGEFTKLIQAGIELVAIDQTSESGRIGASIARTVTVQVTPDQVAALAQAQATGNLS 227

Query: 218 LVLRSIADLNPSSS 231
           L L    D   +SS
Sbjct: 228 LSLVGREDDTVASS 241


>gi|53719432|ref|YP_108418.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei K96243]
 gi|52209846|emb|CAH35818.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei K96243]
          Length = 350

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRVLYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100
           +    L W      A P   + +G                     +P    +L G L+R 
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112

Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + 
Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172

Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205
           L+         +R      + + +RV+A+         D+ +      T T E++   A+
Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232

Query: 206 ALVAAQSVAKLSLVLRSIA 224
            +     +  LSL LRS A
Sbjct: 233 VITVGAHLGALSLALRSFA 251


>gi|261820213|ref|YP_003258319.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163]
 gi|261604226|gb|ACX86712.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163]
          Length = 312

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 113/260 (43%), Gaps = 52/260 (20%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-----ENPAKFINVLISKGDLAVGMVVTP 63
            V+SG   L AGI+A  LV   H+ +          + P K   VL++  DL  G  +  
Sbjct: 7   YVLSGALVL-AGIVA--LVVRSHLSSAPPPPPPVVVQAPEK-TAVLVAAKDLHPGDFIDS 62

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122
             L W    EE V   F + V   ++   L G  +R  + +G  +    LV +   G L+
Sbjct: 63  ASLRW-QVTEEPVSRTF-NFVRGKDSQSLLFGATLRETVTEGSALTNNVLVRQNEPGFLA 120

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--MVRS------LSERKPTVTVVLS-- 172
           ++L KGKRA ++  S  ++  G++   D VDV+  M R        S  +P V  +L+  
Sbjct: 121 AVLGKGKRAISVPTSAVASNAGLVAAGDRVDVILSMKRDDQPELPASRNQPVVMPLLASQ 180

Query: 173 ----NIRVIAIDH--------NIDSDE------------------RVLVGSTATLELTPM 202
               ++RV+A++          +D+ E                  R     T TLE+TP 
Sbjct: 181 TIVRDLRVLALNDRTGTPVYPRLDAMEDGATLDAAAKSRESAVRSRPATYQTVTLEVTPQ 240

Query: 203 QAKALVAAQSVAKLSLVLRS 222
           QA+AL  A+ +  L L LRS
Sbjct: 241 QAEALAVAKELGILHLALRS 260


>gi|149200846|ref|ZP_01877821.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035]
 gi|149145179|gb|EDM33205.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035]
          Length = 289

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 15/188 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPIL 103
           +++ ++   L  G  +  + +   AFP+ ++ +G      +  P         L R+ + 
Sbjct: 48  VDIFVATRALQYGEALDKDAVRLTAFPKTSLPEGVFKATEELFPKGETVARRALRRMEM- 106

Query: 104 KGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------ 156
             +PI   K+ + G   G++S L +G RA  + + ++S V G ++P D +D+        
Sbjct: 107 -NEPILAVKVTEPGAEVGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTIDIYWTGSVGA 165

Query: 157 --VRSLSERKPTVTVVLSN-IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQS 212
             +R+       VT ++ N +++IA+D   D D    ++  T T+ + P Q  AL  AQS
Sbjct: 166 GNMRTEGNSMGEVTKLIENGVKLIAVDQVADMDTSETVIARTVTVAVKPQQVAALAQAQS 225

Query: 213 VAKLSLVL 220
             +LSL L
Sbjct: 226 TGRLSLSL 233


>gi|167620126|ref|ZP_02388757.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           Bt4]
          Length = 234

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 15/147 (10%)

Query: 93  LDGVLVRVPILKGDPI-RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L G L+R P+ +G P+   + ++    G L++ L  G RA ++ I   S   G+I+P D+
Sbjct: 65  LKGDLLRHPVREGMPLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDY 124

Query: 152 VDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATL 197
           VDV++ + L+         ER      + + +RV+A+         D+ +      T T 
Sbjct: 125 VDVLLTQQLAAPGGAPADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTF 184

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIA 224
           E++   A+ +     +  LSL LRS A
Sbjct: 185 EVSSHDAQVITVGAHLGALSLALRSFA 211


>gi|167911034|ref|ZP_02498125.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei 112]
          Length = 210

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 92  ELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D
Sbjct: 32  DLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGD 91

Query: 151 HVDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTAT 196
           +VDV++ + L+         +R      + + +RV+A+         D+ +      T T
Sbjct: 92  YVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVT 151

Query: 197 LELTPMQAKALVAAQSVAKLSLVLRSIA 224
            E++   A+ +     +  LSL LRS A
Sbjct: 152 FEVSSRDAQVITVGAHLGALSLALRSFA 179


>gi|186473163|ref|YP_001860505.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
 gi|184195495|gb|ACC73459.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
          Length = 339

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 19/205 (9%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
           HV+ E V  +   + I V++ + D+  G  ++ +         E   D   DD+ + +A 
Sbjct: 42  HVRAE-VAGKLALRGIEVVVPRRDVPAGTPLSSDAF----VSREIAADLVYDDMVRVDAF 96

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
                  +   ++ G P+R            S +LP G+RA T +I   ++   M++P +
Sbjct: 97  DAFRKAKLVRAVMHGRPLRTSDFDAPRGRDFSDMLPAGQRALTFEIDAVNSTASMLRPGN 156

Query: 151 HVDVVMV-----RSLSERKPTVTVVLSNIRVIAIDHNI------DSDERVLVGS--TATL 197
            VD+  V      S  ERK  V ++L  + V+A   ++      D DE        T T+
Sbjct: 157 RVDMYWVGTQAYASAGERK-AVRLLLPGVLVLATGRSVNARDAGDVDEPASASRYDTVTM 215

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRS 222
           ++    A  +V AQ +  L L+LR+
Sbjct: 216 QVPAADAPRIVLAQKMGTLRLILRN 240


>gi|304311184|ref|YP_003810782.1| Flp pilus assembly protein [gamma proteobacterium HdN1]
 gi|301796917|emb|CBL45130.1| Flp pilus assembly protein [gamma proteobacterium HdN1]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 25/217 (11%)

Query: 26  LVSPHHVQTEEVITENPA-----KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
            ++ ++++TE V   N A     + I V+++  DL +G VVT         P+  V    
Sbjct: 26  FLTQNYIKTE-VTQRNKAIDQQREAIQVVVASADLNIGDVVTLKNAVVRDIPKTFVPS-- 82

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
            + V   N    L+G  ++  +  G+ I    +      G+ SLL  G+RA T+ +    
Sbjct: 83  -EAVTPANFAATLEGRQLKYKVKYGEVILPMHVSSTKIEGIVSLLEPGERAITIPVGKED 141

Query: 141 AVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSNIRVIAIDHNID-------SDERVL 190
            + G ++P   VD+ +     ++S   P     L  ++VIA    ++        D + L
Sbjct: 142 TISGFLRPGSRVDLFLTLKDGAVSRTAP----FLQRVKVIATGTELNDGIPRELKDPKKL 197

Query: 191 --VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
               S  TL +TP+QA  L+ +QSV  +++VLR   D
Sbjct: 198 QKTFSDVTLAVTPVQATKLIHSQSVGDIAMVLRRPED 234


>gi|227326301|ref|ZP_03830325.1| hypothetical protein PcarcW_02899 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 314

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 44/224 (19%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL++  DL  G  +  + L W    E++V   F + V+  +    L G  +R P+ +G 
Sbjct: 46  KVLVAAKDLHPGDFLDSSSLRWQET-EKSVSRAF-NFVYGQDKQSLLLGATLREPVKEGS 103

Query: 107 PIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--MVRS---- 159
            +    +V+    G  +++L KG RA ++  S  ++  G++   D VDV+  M R     
Sbjct: 104 WLSSNVVVNPNEPGFVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQSE 163

Query: 160 --LSERKPTVTVVLS------NIRVIAIDHN--------IDSDE---------------- 187
              S  +P V  +L+      ++RV+A++           D+ E                
Sbjct: 164 LPASRNQPVVMPLLASQTIVRDLRVLALNDKTGTPVYPRFDTAEDGTVLDATAKSRESAV 223

Query: 188 --RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
             R     T TLE+TP QA+AL  A+ +  L L LRS ADL+ S
Sbjct: 224 RSRPATYQTVTLEVTPQQAEALAVAKELGILHLALRS-ADLDDS 266


>gi|167824271|ref|ZP_02455742.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei 9]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 92  ELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D
Sbjct: 32  DLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGD 91

Query: 151 HVDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTAT 196
           +VDV++ + L+         +R      + + +RV+A+         D+ +      T T
Sbjct: 92  YVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVT 151

Query: 197 LELTPMQAKALVAAQSVAKLSLVLRSIA 224
            E++   A+ +     +  LSL LRS A
Sbjct: 152 FEVSSRDAQVITVGAHLGALSLALRSFA 179


>gi|167845817|ref|ZP_02471325.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei B7210]
          Length = 181

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 92  ELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D
Sbjct: 22  DLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGD 81

Query: 151 HVDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTAT 196
           +VDV++ + L+         +R      + + +RV+A+         D+ +      T T
Sbjct: 82  YVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVT 141

Query: 197 LELTPMQAKALVAAQSVAKLSLVLRSIA 224
            E++   A+ +     +  LSL LRS A
Sbjct: 142 FEVSSRDAQVITVGAHLGALSLALRSFA 169


>gi|167815899|ref|ZP_02447579.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei 91]
          Length = 166

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 92  ELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I+P D
Sbjct: 8   DLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGD 67

Query: 151 HVDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTAT 196
           +VDV++ + L+         +R      + + +RV+A+         D+ +      T T
Sbjct: 68  YVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVT 127

Query: 197 LELTPMQAKALVAAQSVAKLSLVLRSIA 224
            E++   A+ +     +  LSL LRS A
Sbjct: 128 FEVSSRDAQVITVGAHLGALSLALRSFA 155


>gi|116620531|ref|YP_822687.1| SAF domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223693|gb|ABJ82402.1| SAF domain [Candidatus Solibacter usitatus Ellin6076]
          Length = 299

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 15/135 (11%)

Query: 102 ILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
           I   +PI   +L  +G  GGL++++P G RA  + ++    V G + P  HVD++    +
Sbjct: 90  IFAKEPIIESRLAPKGAGGGLAAMIPSGMRAVAVRVNEVVGVAGFVVPGMHVDIL----I 145

Query: 161 SERKP-------TVT-VVLSNIRVIAI--DHNIDSDERVLVGSTATLELTPMQAKALVAA 210
           S   P       T+T  +L NI V++   D   D++ + ++     L +TP QA+ L  A
Sbjct: 146 SGNTPGGDGNLGTLTKTLLQNIEVLSAGQDFKKDNEGKPIMVQVVNLLVTPEQAEQLSLA 205

Query: 211 QSVAKLSLVLRSIAD 225
            +   + L+LR+  D
Sbjct: 206 SNQTTIQLILRNPLD 220


>gi|226325180|ref|ZP_03800698.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758]
 gi|225206528|gb|EEG88882.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758]
          Length = 497

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 10/228 (4%)

Query: 1   MKLTRLMGIVVS-GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           +K++RL  +     V A++AG +A  +VS   +     I E  +    V+ +   +  G 
Sbjct: 271 VKVSRLQKVTAGLAVIAVLAGGVA--VVS--EIDANNRIAEAFSGTTEVVAATKTIHAGD 326

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            ++ + L +V+ P   V DG I      ++ +   G +    I KG  +       + N 
Sbjct: 327 EISASDLAFVSVPNSTVADGAITKKDIDDSSKTPVGRVATQYIAKGSQLTNASTAGKDNP 386

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             L++ +  G  A T+ +   S +GGM++ ND V V+     S      TV+  ++R+ A
Sbjct: 387 ESLAAAIGDGMEAVTISVDAQSGMGGMLRVNDRVKVIQPNDGSLGGDGFTVIADSVRIAA 446

Query: 179 IDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +D N           ST TLE+TP QA  +   ++   L+L L S AD
Sbjct: 447 LDGNFSSGSGSSDGYSTVTLEVTPEQAGKI---RTAGGLTLTLPSSAD 491


>gi|76663414|emb|CAE47790.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 42/253 (16%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            ++ AG+ A  L+  +  + +    +       V+++K D+A    V   ++E    P  
Sbjct: 11  LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTVYDTMVETKELPA- 69

Query: 75  NVFDGFIDDVHQPNAM---QELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKR 130
                   D  QP+A+    E+ G +  VPI KG  I    L+  G + G+S  +   KR
Sbjct: 70  --------DFIQPDAITVPDEIIGNVAAVPIRKGQMIVKNNLLTPGPDTGISLQVAPSKR 121

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTV------------VLSNI 174
           A T+ +     V  +I+P D +D+       + +++R+   T+            V++NI
Sbjct: 122 AVTIPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNI 181

Query: 175 -RVIAIDHNIDSDERV-LVG----STATLELTPMQAKALVAAQSVAKLSLVL-------R 221
            R+  +D    +  ++ L G    +T T+E TP +A+ L    S A  +L +       R
Sbjct: 182 PRMFELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDR 241

Query: 222 SIADLNPSSSEDS 234
           +I    PSS+ DS
Sbjct: 242 TIPPRMPSSTSDS 254


>gi|296121061|ref|YP_003628839.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
 gi|296013401|gb|ADG66640.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
          Length = 390

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%)

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
           ++ +E D    RV + +G  +  ++L ++G  G S  +P G R  T+ ++ +    G++ 
Sbjct: 75  SSKEEYDKRAPRVKLYEGQYVLKKQLGNKGEYGASMEIPPGMRVVTVPVTATMTHSGLLS 134

Query: 148 PNDHVDVVMVRSLSERKPTVT----VVLSNIRVIAIDHNIDSDERVLVGSTATLE----- 198
           P D VDV +  S +  K   T     VL  I V A D        V +G+ A  E     
Sbjct: 135 PGDRVDVQVTYSYTRPKYGKTFKTRTVLQYIEVWATDS-------VRMGTEAAKEDSSQS 187

Query: 199 ------LTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
                 + P Q   L  AQ    L L+LR   D  P+
Sbjct: 188 KNVSLLVYPGQGALLQLAQEKGTLHLLLRGRNDKAPA 224


>gi|51245388|ref|YP_065272.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54]
 gi|50876425|emb|CAG36265.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54]
          Length = 285

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 106/231 (45%), Gaps = 17/231 (7%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTP 63
           RL  +V++ V A     +  + +S  +V    V+ + P +   ++ ++  D++ G  +  
Sbjct: 6   RLTFLVIAVVIAFSVSFVVYKKMSTPNV----VMEQKPGQATTDIAVAVKDMSRGSKIGS 61

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGNGGL 121
             ++   + +E +  G   D+ Q      + G +V  P+   +PI    L   D   GGL
Sbjct: 62  EDVQMATYLQETLPSGHFTDLEQ------VVGRIVLSPLTTTEPILNSDLAPQDLTKGGL 115

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKPTVT-VVLSNIRVIAI 179
           ++++   KRA  + +     V G + P   VDV V +    + +  +T  VL NI V+++
Sbjct: 116 AAVITPTKRAMAIKVDNVIGVAGFLHPGHLVDVLVSIEKPGDTRSQITKTVLQNILVLSV 175

Query: 180 DH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
                  +D++V   +  TLE+   + + L  A +  ++ L LR  +D+ P
Sbjct: 176 GTLAQESADKKVHKVTVVTLEVDLEEGEKLALAVNEGRIQLALRGYSDVEP 226


>gi|257790321|ref|YP_003180927.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325830034|ref|ZP_08163491.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
 gi|257474218|gb|ACV54538.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325487501|gb|EGC89939.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
          Length = 306

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 117 GNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174
           G GG  LS+ L  G +A T+ + + + + G ++P D V +V     S  +  +  V    
Sbjct: 186 GMGGDRLSAELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERA 245

Query: 175 RVIAIDHNIDSDERVLVGSTA-TLELTPMQAKALVAAQSVAKLSLVL 220
           RV+A+  +  S   V  GS + T+E++P +A A+  AQ   ++SLVL
Sbjct: 246 RVVAVGDDATS---VQSGSASVTVEVSPEEADAVREAQFAGRVSLVL 289


>gi|227114875|ref|ZP_03828531.1| hypothetical protein PcarbP_18020 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 314

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 113/264 (42%), Gaps = 51/264 (19%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN----VLISKGDLAVGMVVTPN 64
            V+SG   L AGI+A+ + S  H+ +E                VL++  DL  G  + P+
Sbjct: 7   YVLSGALVL-AGIVALMVRS--HLSSEPPAPPPVVVKAPEKAAVLVAAKDLHPGDFIDPS 63

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SS 123
            L W    +E V   F + V   +    L G  +R  + +G  +    +V     G  ++
Sbjct: 64  SLRWQTT-DEPVSRSF-NFVRGQDNQSLLLGATLRETVTQGSWLSSNVVVKPNEPGFVAA 121

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVV--MVRS------LSERKPTVTVVLS--- 172
           +L KG RA ++  S  ++  G++   D VDV+  M R        S  +P V  +L+   
Sbjct: 122 VLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPASRNQPVVMPLLASQT 181

Query: 173 ---NIRVIAIDHN--------IDSDE------------------RVLVGSTATLELTPMQ 203
              ++RV+A++           D+ E                  R     T TLE+TP Q
Sbjct: 182 IVRDLRVLALNDKTGTPIYPRFDAAEDGTVLDATAKSRESAVRSRPATYQTVTLEVTPQQ 241

Query: 204 AKALVAAQSVAKLSLVLRSIADLN 227
           A+AL  A+ +  L L LRS ADL+
Sbjct: 242 AEALAVAKELGILHLALRS-ADLD 264


>gi|253687067|ref|YP_003016257.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753645|gb|ACT11721.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 314

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 50/259 (19%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA----KFINVLISKGDLAVGMVVTPN 64
            V+SG F L AGI+A  LV   H+ +E            + I VL++  DL  G  +  +
Sbjct: 7   YVLSGAFVL-AGIVA--LVVRSHLSSEPPAPPPVVAKAPEKIAVLVAAKDLHPGDFIDSS 63

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SS 123
            + W    +E+V   F + V   ++   L G  +R  + +G  +    +V     G  ++
Sbjct: 64  SVRWQT-TDESVSRSF-NFVRGRDSQFLLFGATLRETVKEGTQLSSNVVVKPNEPGFVAA 121

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVV--MVRS------LSERKPTVTVVLS--- 172
           +L KG RA ++  S  ++  G++   D VDV+  M R       +S  +P V  +L+   
Sbjct: 122 VLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPVSRNQPVVMPLLASQT 181

Query: 173 ---NIRVIAIDHNIDS--------------------------DERVLVGSTATLELTPMQ 203
              ++RV+A++  + +                            R     T TLE+TP Q
Sbjct: 182 IVRDLRVLALNDKVGTPVYPRLDAMEDGAALDAAAKSRESAVRSRPATYQTVTLEVTPQQ 241

Query: 204 AKALVAAQSVAKLSLVLRS 222
           A+AL  A+ +  L L LRS
Sbjct: 242 AEALTVAKELGILHLSLRS 260


>gi|50119733|ref|YP_048900.1| hypothetical protein ECA0788 [Pectobacterium atrosepticum SCRI1043]
 gi|49610259|emb|CAG73702.1| putative exported protein [Pectobacterium atrosepticum SCRI1043]
          Length = 314

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 56/262 (21%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEE-----VITENPAKFINVLISKGDLAVGMVVTP 63
            V+SG   L AGI+A+ + S  H+ +E      ++ + P K + VL++   L  G  +  
Sbjct: 7   YVLSGALVL-AGIVALMVRS--HLSSEPPAPPPMVVKVPEK-VAVLVAAKALHPGDFIDS 62

Query: 64  NILEW--VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             L W     P    F+ FI      ++   L G  +R  + +G P+    LV     G 
Sbjct: 63  ASLRWDETDKPVSRTFN-FI---RGKDSQSLLLGATLRETVAEGTPLTSNVLVKPNEPGF 118

Query: 122 -SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--------SERKPTVTVVLS 172
            +++L KG RA ++  S  ++  G++   D VDV++            S  +P V  +L+
Sbjct: 119 VAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQAELPPSRNQPVVMPLLA 178

Query: 173 ------NIRVIAI---------------------DHNIDSDE-----RVLVGSTATLELT 200
                 ++RV+A+                     D    S E     R     T TLE+T
Sbjct: 179 SQTIVRDLRVLALNDKTGTPIYPRFDVAEDGTVLDATAKSRESAVRSRPTTYQTVTLEVT 238

Query: 201 PMQAKALVAAQSVAKLSLVLRS 222
           P QA+AL  A+ +  L L LRS
Sbjct: 239 PQQAEALAVAKELGMLHLALRS 260


>gi|281356955|ref|ZP_06243445.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548]
 gi|281316513|gb|EFB00537.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548]
          Length = 264

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSN 173
           G + ++  G RA  + +   S+V  +I+PND VDV+       VR  S        +L +
Sbjct: 113 GFNGVIRPGMRAVAIPVDPVSSVNNLIQPNDDVDVIGTFRFPDVRGDSSLDTVTLTILQD 172

Query: 174 IRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           ++V+A+ +   S      G+    T TL L P + + ++ A    KL+L LR+  D+  S
Sbjct: 173 VKVLAVGNRWGSASLDPAGARSYGTVTLLLYPEEVEMIIFASQKGKLNLSLRNFEDVKIS 232

Query: 230 SSEDSDVWDVQEEGKEI 246
              +    + ++  KEI
Sbjct: 233 RETEKRSVNFKQLEKEI 249


>gi|317489770|ref|ZP_07948269.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA]
 gi|316911116|gb|EFV32726.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA]
          Length = 306

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 117 GNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174
           G GG  LS+ L  G +A T+ + + + + G ++P D V +V     S  +  +  V    
Sbjct: 186 GMGGDRLSAELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERA 245

Query: 175 RVIAIDHNIDSDERVLVGSTA-TLELTPMQAKALVAAQSVAKLSLVL 220
           RV+A+    D    V  GS + T+E++P +A A+  AQ   ++SLVL
Sbjct: 246 RVVAVG---DDATGVQSGSASVTVEVSPEEADAVREAQFAGRVSLVL 289


>gi|311105391|ref|YP_003978244.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8]
 gi|310760080|gb|ADP15529.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8]
          Length = 284

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 18/217 (8%)

Query: 12  SGVFA--LVAGIIAMRLVSPH---HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +GV+A  L+AG+++   V  H    VQ  E     P   ++ L++  DL  G  +    L
Sbjct: 15  TGVYAIALIAGLVSAWAVREHVQQRVQALEAEARTP--MVSRLVAAYDLPAGTQLEELHL 72

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLL 125
                PE       ID    P  +  L G  +   +  G+P+    L        L+S L
Sbjct: 73  AVREIPEPWASRASID----PLDLSGLLGATLLADVANGEPLLRGHLTFTAPVPALASRL 128

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNID 184
             G+RA T+  +    +  +++  D +D+ +  S + R+  +TV +L  +RV+ +    D
Sbjct: 129 RSGQRALTVAATDLGGLAEVLRVGDAIDIYV--SFAHRQQELTVPLLQGMRVLMVGGEAD 186

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            + +   G   TL  TP +A   VAA+    L+ +LR
Sbjct: 187 GENK---GGNITLAATPDEAMRFVAARQSGVLTAMLR 220


>gi|51468905|emb|CAE47778.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 314

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 42/253 (16%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            ++ AG+ A  L+  +  + +    +       V+++K D+A    +   ++E    P  
Sbjct: 24  LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPA- 82

Query: 75  NVFDGFIDDVHQPNAM---QELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKR 130
                   D  QP+A+    E+ G +  VPI KG  +    L+  G + G+S  +   KR
Sbjct: 83  --------DFIQPDAITIPDEIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKR 134

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTV------------VLSNI 174
           A T+ +     V  +I+P D +D+       + +++R+   T+            V++NI
Sbjct: 135 AVTIPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNI 194

Query: 175 -RVIAIDHNIDSDERV-LVG----STATLELTPMQAKALVAAQSVAKLSLVL-------R 221
            R+  +D    +  ++ L G    +T T+E TP +A+ L    S A  +L +       R
Sbjct: 195 PRMFELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDR 254

Query: 222 SIADLNPSSSEDS 234
           +I    PSS+ DS
Sbjct: 255 TIPPRMPSSTSDS 267


>gi|121607247|ref|YP_995054.1| SAF domain-containing protein [Verminephrobacter eiseniae EF01-2]
 gi|121551887|gb|ABM56036.1| SAF domain [Verminephrobacter eiseniae EF01-2]
          Length = 306

 Score = 43.5 bits (101), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 72/143 (50%), Gaps = 6/143 (4%)

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMI 146
           P   + ++G  +   +  G+ +    +  R     S+ +  G+RA T+ +   +++ G++
Sbjct: 91  PEHFERIEGQGIEHGLKAGEMLLWSLMQTRKAATFSARIEIGRRAITVHVDEINSISGLL 150

Query: 147 KPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPM 202
           +P D +D+++      +K T   +L N++V+A       D    ER    ST TL+ T  
Sbjct: 151 EPGDAIDLMVTLDRGGKKITFP-LLQNVQVMATGQRSADDPKSGERRQY-STVTLDTTQA 208

Query: 203 QAKALVAAQSVAKLSLVLRSIAD 225
           QA++++ A+   K++ +LR+  D
Sbjct: 209 QAQSVIVAREAGKITALLRNPQD 231


>gi|296122068|ref|YP_003629846.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
 gi|296014408|gb|ADG67647.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
          Length = 334

 Score = 43.5 bits (101), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 14/135 (10%)

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISSAVG---GMIKPND 150
           G + R  I   +PIR  +L   G   L  L +  G RA  + IS++  VG   GMIKP +
Sbjct: 85  GRVARTKIRAAEPIRAGQLYQPGE--LPDLRVADGMRA--VSISVAEMVGIVDGMIKPGN 140

Query: 151 HVDVVMV---RSLSERKPTVTV-VLSNIRVIAIDHNIDSDERVLVG-STATLELTPMQAK 205
           +VDV+     +S ++ +  VT+ +   ++VIAI+ +  +  RV  G +  TLELT  QA 
Sbjct: 141 YVDVLFTVESQSNADLQGGVTMRLFEGVKVIAINRSF-TQSRVERGVNRVTLELTQAQAN 199

Query: 206 ALVAAQSVAKLSLVL 220
            +  A++   L+L+ 
Sbjct: 200 IITLAEAKGALTLIF 214


>gi|42521753|ref|NP_967133.1| putative flp pilus assembly protein CpaB [Bdellovibrio
           bacteriovorus HD100]
 gi|39574283|emb|CAE77787.1| putative flp pilus assembly protein CpaB [Bdellovibrio
           bacteriovorus HD100]
          Length = 301

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 42/253 (16%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            ++ AG+ A  L+  +  + +    +       V+++K D+A    +   ++E    P  
Sbjct: 11  LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPA- 69

Query: 75  NVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKR 130
                   D  QP+A+    E+ G +  VPI KG  +    L+  G + G+S  +   KR
Sbjct: 70  --------DFIQPDAITIPDEIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKR 121

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTV------------VLSNI 174
           A T+ +     V  +I+P D +D+       + +++R+   T+            V++NI
Sbjct: 122 AVTIPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNI 181

Query: 175 -RVIAIDHNIDSDERV-LVG----STATLELTPMQAKALVAAQSVAKLSLVL-------R 221
            R+  +D    +  ++ L G    +T T+E TP +A+ L    S A  +L +       R
Sbjct: 182 PRMFELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDR 241

Query: 222 SIADLNPSSSEDS 234
           +I    PSS+ DS
Sbjct: 242 TIPPRMPSSTSDS 254


>gi|91775996|ref|YP_545752.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT]
 gi|91709983|gb|ABE49911.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT]
          Length = 299

 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
           PA    +++++ D+  G V+ P  L       +N            +A  +L G +V   
Sbjct: 40  PAVLYPLVVARQDIPAGHVLLPEDLALEESESQNPL--------AYSATTDLVGRMVESS 91

Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           I K  PI       RG    + LL  G+R   + +     VGG I+P DHVDV++  + S
Sbjct: 92  IEKNAPILSSHFAQRGPA--AQLLKHGERGVAIKVDEVVGVGGFIQPGDHVDVLVYINSS 149

Query: 162 ERKPT---VTVVLSNIRVI----AIDHNIDS 185
               T      +L ++RVI    A+  N+ S
Sbjct: 150 NGMTTDSSAQSILRDVRVISYGDALQQNVSS 180


>gi|110833079|ref|YP_691938.1| hypothetical protein ABO_0218 [Alcanivorax borkumensis SK2]
 gi|110646190|emb|CAL15666.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 298

 Score = 43.5 bits (101), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKPTVTVVLSNIRVIAI 179
           L+  +P   RA  +DI  +SAVGG+++P D VDV V  R   + +PT  ++L  I V+A+
Sbjct: 120 LAQSVPAQFRAFAIDIDNASAVGGLLEPGDLVDVLVHFRKGQDEQPTSMILLKAIEVLAV 179

Query: 180 DHNI-DSDE 187
              + D+D+
Sbjct: 180 KGQLQDADK 188


>gi|170725114|ref|YP_001759140.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908]
 gi|169810461|gb|ACA85045.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908]
          Length = 298

 Score = 42.7 bits (99), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +D +H P    ++ G ++  P+  G P+    L        S +L +G+RA T++I   +
Sbjct: 82  LDAIH-PKDFNQIVGQMLLEPMSPGRPLMGTYLPGHKAEQFSDILKEGQRAVTINIDELN 140

Query: 141 AVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIA 178
           +  GM+ P+DH+D+++  S  E      +  + ++L N+ V+A
Sbjct: 141 STAGMLVPSDHIDLLL--SFDEESGDIERKKLQLLLENVTVLA 181


>gi|84516632|ref|ZP_01003991.1| CpaB family protein [Loktanella vestfoldensis SKA53]
 gi|84509668|gb|EAQ06126.1| CpaB family protein [Loktanella vestfoldensis SKA53]
          Length = 277

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 91/188 (48%), Gaps = 15/188 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPIL 103
           ++V ++   +  G  +T + +  V +P + + +G         P   Q     +V +P++
Sbjct: 48  VDVYVTTRSVTYGEYLTADDVRLVPYPRDYLPEGTFATEQSLFPQGTQTPR--VVVLPMI 105

Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             + +   K+ + G + GL++L+  G RA  ++  +++  G +++P+D +DV     L +
Sbjct: 106 ANELVLTTKVSEPGASRGLTALVEPGFRAFPVEGRVAAGFG-ILRPDDRIDVYWTGRLRD 164

Query: 163 RKPTVTVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            +    ++ S +++IA+     N    + V+V      ++TP +   L  AQ+  +L+L 
Sbjct: 165 GREVTNLIKSGLQIIAVLGDAGNRGGPQSVVV------QVTPEEVALLTQAQNSGQLTLA 218

Query: 220 LRSIADLN 227
           L    DL+
Sbjct: 219 LVGTGDLS 226


>gi|91777218|ref|YP_552426.1| putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400]
 gi|91689878|gb|ABE33076.1| Putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400]
          Length = 363

 Score = 42.7 bits (99), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 35/222 (15%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           + V++   D+ VG  ++    ++VA   E   D   DD+ + +  ++     +  P+ +G
Sbjct: 56  VTVVVPAQDVPVGTPLSSG--DFVA--REIAGDLVYDDMIRADNFEQYRSSHLVKPVRRG 111

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----- 160
            P+R   +        S +L  G RA T++I   +A   +++P +HVDV  V  +     
Sbjct: 112 LPLRAGDIDALRGRDFSDVLRPGTRALTVEIDTVNATALLLRPGNHVDVYWVGKVFHEDH 171

Query: 161 -SERKPTVTVVLSNIRVIAIDHNI---DSDERV-----------------LVGSTATLEL 199
            S+ K    +V+ N+ V+A   ++   D+ E                   +  +T TLE+
Sbjct: 172 TSDEKKVAQLVMPNVLVLATGEDMRPRDAGEAAQQDQANANSSAMSRQAGMGYTTVTLEI 231

Query: 200 TPMQAKALVA-AQSVAKLSLVLRSIADL---NPSSSEDSDVW 237
            P+   A VA AQ +  L L+LR+  D     PS +++SDV+
Sbjct: 232 -PVDDVARVALAQKIGGLRLILRNSEDKGADGPSLAQESDVF 272


>gi|209546007|ref|YP_002277897.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538864|gb|ACI58797.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-EWVAFPEE 74
           A++ G+I   L+   +  TE V  E  A     L     +  G  +TP++L E V  PE 
Sbjct: 8   AVIVGLITGVLL---YFWTESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAEPVMLPES 64

Query: 75  NVFDGFID-DVHQPNAMQE-LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
             F       V   +A QE L        I  G  +  +   D   G L++++  GKRA 
Sbjct: 65  --FGALAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDNDGGRLTTMIAPGKRAL 122

Query: 133 TMDISISSAVGGMIKPNDHVDVV 155
           T+ ++ +SAVG  ++P  +VD++
Sbjct: 123 TLPVNAASAVGHFVEPGSYVDIL 145


>gi|78486069|ref|YP_391994.1| Flp pilus assembly CpaB [Thiomicrospira crunogena XCL-2]
 gi|78364355|gb|ABB42320.1| Flp (type IV) pilus assembly protein CpaB homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 296

 Score = 42.7 bits (99), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 31/233 (13%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
           LV G +  R+       + + IT  E P +  +++++  D+  G  +  + ++ +  P E
Sbjct: 24  LVYGYVQNRVAEAEANASTKTITVVEKP-ELHSIVVASRDIYRGEKIEADDVKVLNVPME 82

Query: 75  N-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS---LLPKGKR 130
             V  G I  ++  NA+    G +    I  G+ I  +KL         S   LL K +R
Sbjct: 83  GLVVKGVI--INPQNAV----GHVAHQKIYAGEWILAKKLKLESQSRFQSVEALLEKTRR 136

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAID-------HN 182
           A  + I   + + G+I P DHVDV+ V   ++ K  V+  +L NI V++I          
Sbjct: 137 AIRLPIEPDTGLLGIISPGDHVDVISVFESADSKRMVSRTILQNITVLSIGIENQMRAST 196

Query: 183 IDSDE---RVLVGSTAT-------LELTPMQAKALVAAQSVAKLSLVLRSIAD 225
            DS+E    +     A+       L++   QA+ L  A +V  + L+LR+ AD
Sbjct: 197 ADSEEDNQNLFANKQASNKKSMVALDVDTTQAEKLALAMNVGAIHLLLRNSAD 249


>gi|149175454|ref|ZP_01854075.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797]
 gi|148845722|gb|EDL60064.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797]
          Length = 367

 Score = 42.4 bits (98), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 128 GKRAATMDISIS-SAVGGMIKPNDHVDVVMVRS-LSERK---PTVTVVLSN-IRVIAIDH 181
           G RA ++ +  S   V G+IKP ++VDV M  + ++  K     +T+ L N +RVIAI+ 
Sbjct: 117 GMRAISVSLESSVDLVDGLIKPGEYVDVHMTPTGMNNDKRLNGGMTLTLFNGVRVIAINR 176

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
           +   +     G+  TLELTP QA  ++ A+   ++++
Sbjct: 177 SYTQNSSSRRGTNVTLELTPEQANIMILARDRGEITM 213


>gi|127511580|ref|YP_001092777.1| SAF domain-containing protein [Shewanella loihica PV-4]
 gi|126636875|gb|ABO22518.1| SAF domain protein [Shewanella loihica PV-4]
          Length = 298

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +D +H P+   E+ G ++  P+  G P+    L        S +L +G+RA T+DI   +
Sbjct: 82  LDAIH-PSRFGEVAGQMLLQPMAPGRPLIETYLPGMRVAQFSDILKEGQRAVTIDIDEIN 140

Query: 141 AVGGMIKPNDHVDVVM 156
           +  GM+ P+DH+D+++
Sbjct: 141 SSAGMLVPSDHIDLLL 156


>gi|307726634|ref|YP_003909847.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
 gi|307587159|gb|ADN60556.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
          Length = 365

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 29/189 (15%)

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
           D   DD+ +P+  ++     +  P+ +G P+R   +        S +LP G+RA T++I 
Sbjct: 84  DLVYDDMIRPDNFEQYRTSHLVKPVRRGLPLRAGDIDALRGRDFSDILPAGQRAVTVEID 143

Query: 138 ISSAVGGMIKPNDHVDVVMV------RSLSERKPTVTVVLSNIRVIAIDHNID------- 184
             ++   +++P + VDV  +         S+ +    +++ N+ V+A   ++        
Sbjct: 144 TVNSTALLVRPGNRVDVYWIGKAFHQDRTSDDQRVAQLIMPNVLVLATGQDLRPRDAGEA 203

Query: 185 -------------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI---ADLNP 228
                        S ++ +  +T TL++    A  +  AQ +  L L+LR+    A   P
Sbjct: 204 SEQDQANANSSAMSRQQGMGYTTVTLQVPAEDAGRIALAQKIGGLRLILRNADDKASAGP 263

Query: 229 SSSEDSDVW 237
             +E+ DV+
Sbjct: 264 VLTEEQDVF 272


>gi|114797097|ref|YP_759868.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC
           15444]
 gi|114737271|gb|ABI75396.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC
           15444]
          Length = 295

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 18/187 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            + +++  +  G ++  +++E   +PE  V  G +  V          G++V      G+
Sbjct: 47  QIAVARATIEPGKLIDASMVEMRDWPESAVPAGAMRAVTDLGETAYSRGLVV-----AGE 101

Query: 107 PIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV---VMVRSL-- 160
           P+  EK+   G+   L++ +  G RA ++ ++  + V G + P D VDV   V  +    
Sbjct: 102 PLLAEKIDTTGSVLTLAANIQPGMRAVSVVVANDTGVAGFVLPGDRVDVNEFVEAKDARG 161

Query: 161 ----SERKPTVTV--VLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSV 213
               S R   V    VL  ++V+A+D   +   E     +T TLE+TP  A  L AA   
Sbjct: 162 APEDSRRSADVFAQPVLKGVKVLAVDQTFEEGLEGAYPSNTVTLEVTPQDALLLGAASRR 221

Query: 214 AKLSLVL 220
           A L L L
Sbjct: 222 AALGLAL 228


>gi|33593510|ref|NP_881154.1| putative secretory protein [Bordetella pertussis Tohama I]
 gi|33572866|emb|CAE42801.1| putative secretory protein [Bordetella pertussis Tohama I]
 gi|332382918|gb|AEE67765.1| putative secretory protein [Bordetella pertussis CS]
          Length = 281

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 15/212 (7%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVGMVVTPNILEWVAF 71
            FALVAG +A    +  H+Q      E  A+   +  L++  DL  G  +   ++     
Sbjct: 17  AFALVAGSLAA-WAAREHIQRRVHDIEQQARVPMVASLVAALDLEAGTPLHDELVAVRDM 75

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKR 130
           P+  +  G +     P+    LDG ++R P+  G+ ++   L        L+  L  G+ 
Sbjct: 76  PQAWLPAGAL----LPDEAARLDGAVLRAPVKAGEALQAALLSYPEQTPALTEQLEAGQG 131

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNIDSDERV 189
           A T+ +     +    +P D VD+ +  S + R+  +T+ +L+  +V+A+D   D+    
Sbjct: 132 AITLPLQELPGLSAAARPGDLVDLYV--SFTHRQRQLTMPLLAGSKVLALD-PADAQGGA 188

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
              ST TL  +  +   LVAA+    L+ VLR
Sbjct: 189 ---STITLRASAREVARLVAARQEGTLTAVLR 217


>gi|33601079|ref|NP_888639.1| hypothetical protein BB2096 [Bordetella bronchiseptica RB50]
 gi|33575514|emb|CAE32592.1| putative exported protein [Bordetella bronchiseptica RB50]
          Length = 277

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 15/211 (7%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVGMVVTPNILEWVAF 71
            FALVAG +A    +  H+Q      E  A+   +  L++  DL  G  +   ++     
Sbjct: 17  AFALVAGSLAA-WAAREHIQRRVHDIEQQARVPMVASLVAARDLEAGTPLHDELVAVRDM 75

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKR 130
           P+  +  G +     P+    LDG ++R P+  G+ ++   L        L+  L  G+ 
Sbjct: 76  PQAWLPAGALP----PDEAARLDGAVLRAPVKAGEALQAALLSYPEQTPALTEQLEAGQG 131

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNIDSDERV 189
           A T+ +     +    +P D VD+ +  S + R+  +T+ +L+  +V+A+D   D+    
Sbjct: 132 AITLPLQELPGLSAAARPGDLVDLYV--SFTHRQRQLTMPLLAGSKVLALD-PADAQGGA 188

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
              ST TL  +  +   LVAA+    L+ VL
Sbjct: 189 ---STITLRASAREVARLVAARQEGTLTAVL 216


>gi|163856387|ref|YP_001630685.1| putative secreted protein [Bordetella petrii DSM 12804]
 gi|163260115|emb|CAP42416.1| putative secreted protein [Bordetella petrii]
          Length = 281

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%)

Query: 31  HVQTE--EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
           H+Q    E+  E     ++ L+   DL  G  +    L     P   V  G  D    P 
Sbjct: 35  HIQARVREIEREAEVLAVDKLVVATDLPAGTRLQAGHLAVRDIPVPWVASGSFD----PE 90

Query: 89  AMQELDGVLVRVPILKGDPI-RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
           A  ++ G ++   + +GD +  +          LS L+P G+RA T+     +A  G+++
Sbjct: 91  AADQVIGAVLAADLRQGDALLDVHLAPAVAAPALSELVPAGRRAVTLPAEEINAAAGLLR 150

Query: 148 PNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206
             D +D+ +  S + R   +T  ++  +RV+A++   D+   +      TL+ +   A  
Sbjct: 151 AGDLIDLYV--SFAHRGQHLTAPLMQGVRVLAMESGADAAPSI------TLDASAQDAIK 202

Query: 207 LVAAQSVAKLSLVLRSIAD 225
           LVAA+    L+ +LR   D
Sbjct: 203 LVAARHGGTLTAMLRHRGD 221


>gi|116255772|ref|YP_771605.1| hypothetical protein pRL110571 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260420|emb|CAK03524.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 312

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-EWVAFP 72
           + A++ G+I   L+   +  TE V  E  A     L     +  G  +TP++L E V  P
Sbjct: 6   IAAVIVGLITGVLL---YFWTESVKNEQTAYAFMRLQPDRKVTRGQAITPDMLAEPVMLP 62

Query: 73  EENVFDGFID-DVHQPNAMQE-LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
           E   F       V   +A QE L        I  G  +  +   D   G L++++  GKR
Sbjct: 63  ES--FGALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTMIAPGKR 120

Query: 131 AATMDISISSAVGGMIKPNDHVDVV 155
           A T+ ++ ++AVG  ++P  +VD++
Sbjct: 121 ALTLPVNAAAAVGHFVEPGSYVDIL 145


>gi|59711119|ref|YP_203895.1| CpaB family Flp pilus assembly protein [Vibrio fischeri ES114]
 gi|59479220|gb|AAW85007.1| Flp pilus assembly protein CpaB family [Vibrio fischeri ES114]
          Length = 270

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 38/235 (16%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-------INVLISKGDLAVGMVV 61
           I+V  V A+  G+  M   S     TE  ITE   +F       + V I+K DL  G  V
Sbjct: 6   ILVLAVIAISIGLYGMSQTST----TESPITEKVQEFDKRPEATVMVWIAKKDLMFGSPV 61

Query: 62  TPNILE--WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
               LE   ++  + + F G I DV + N  ++L   LV+  IL+GD +  + L+  G  
Sbjct: 62  QRTDLEVQRISQTQADRF-GIIHDV-KFNFNKKL---LVKKDILQGDIVTSDMLLSPGQE 116

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI---- 174
           G L+ ++ +GK    +++S  + +GG I   D VD+  + S SE+  +    +SN+    
Sbjct: 117 GYLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISS-SEQNLSNDASISNVQSLK 175

Query: 175 ------RVIAIDHNIDSDERVLVGSTAT-------LELTPMQAKALVAAQSVAKL 216
                 +++ +D  I  ++ V + S +T       LE++  +   LV AQ +A+L
Sbjct: 176 MAPLLTQIMVLDI-IQQEKPVRLNSKSTKTVTNLVLEVSNRELAKLVIAQRIAEL 229


>gi|296134297|ref|YP_003641544.1| Flp pilus assembly protein CpaB [Thermincola sp. JR]
 gi|296032875|gb|ADG83643.1| Flp pilus assembly protein CpaB [Thermincola potens JR]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 26/153 (16%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM---QELDGVLVRVPILK 104
           V+++  ++    V+T +++     PEE V          PNA+   +++ G +    I  
Sbjct: 40  VVVANVNIPARTVITGDMVSVKDVPEEFV---------HPNAVLDEEQVIGFVSGSDISA 90

Query: 105 GDPIRLEKLVDR-GNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-- 160
           G+ +  EK++ + GN   LS  +P G RA ++ I+  + VGG+++P D VDV+    L  
Sbjct: 91  GEQVLREKILRKEGNPVSLSYQVPLGSRAMSVPINEVTGVGGLVRPGDRVDVIGTIELET 150

Query: 161 ------SERKPTVT----VVLSNIRVIAIDHNI 183
                  +  PT T    V+L N+ V+A+  N 
Sbjct: 151 SNPASNQQTGPTQTTVAHVLLQNVEVLAVGDNF 183


>gi|86360427|ref|YP_472315.1| hypothetical protein RHE_PE00151 [Rhizobium etli CFN 42]
 gi|86284529|gb|ABC93588.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 309

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-EWVAFPEE 74
           A++ G+I   L+   +  TE V  E  A     L     +  G  +TP++L E V  PE 
Sbjct: 8   AVIVGLITGVLL---YFWTESVKNEQVAYAFMRLQPDKKVTRGQAITPDMLAEPVMLPES 64

Query: 75  NVFDGFIDDVHQP--NAMQE-LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131
               G +  +  P  +A QE L        I  G  +  +   D   G L++++  GKRA
Sbjct: 65  F---GPLAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDTDGGRLTTMIAPGKRA 121

Query: 132 ATMDISISSAVGGMIKPNDHVDVV 155
            T+ ++ + AVG  ++P  +VD++
Sbjct: 122 LTLPVNAAEAVGHFVEPGSYVDIL 145


>gi|307295324|ref|ZP_07575163.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
 gi|306878827|gb|EFN10046.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 19/121 (15%)

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172
           L+  +P G RA ++D +   AV G+++P D VDV +V   ++         +     +L 
Sbjct: 117 LAMRVPMGMRAVSIDTTAEIAVAGLVRPGDRVDVQVVYPGADAISGARGAGRSRAQALLQ 176

Query: 173 NIRVIAIDHNIDSDERV-----------LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            ++V+A+   +    +            L   T TL LTP Q  AL  A+++  L+L LR
Sbjct: 177 MVQVLAVGEVVVGARQASGVEGALASPPLPARTVTLALTPEQVSALSLAKNIGALTLSLR 236

Query: 222 S 222
           +
Sbjct: 237 N 237


>gi|320161465|ref|YP_004174689.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1]
 gi|319995318|dbj|BAJ64089.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 13/140 (9%)

Query: 24  MRLVSPHHVQTEEVITENPA----KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
           +R  +P+ + T    T  P     +  +++IS   ++ G+      +  + +P++++ +G
Sbjct: 30  VRFFAPNQLPTAPGETSAPPTPVEEMTSIVISVQPISRGLEFNETNVTTIPYPKKDLVEG 89

Query: 80  -FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGNGGLSSLLPKGKRAATMDI 136
            FI D+      QE+ G   +  I    PI +  LVD    N   +  +P G+ A T+ +
Sbjct: 90  AFITDI------QEVLGKRAKFDIEARTPITMTMLVDPTTKNSPAAFQIPPGQVAITIPV 143

Query: 137 SISSAVGGMIKPNDHVDVVM 156
           S  S+V   ++P DHV+V++
Sbjct: 144 SKLSSVAYGLEPGDHVNVIV 163


>gi|241667103|ref|YP_002985187.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862560|gb|ACS60225.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 318

 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-EWVAFP 72
           + A++ G+I   L+   +  TE V  E  A     L     +  G  +TP++L E V  P
Sbjct: 6   IAAVIVGLITGVLL---YFWTESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAEPVMLP 62

Query: 73  EENVFDGFID-DVHQPNAMQE-LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
           E   F       V   +A QE L        I  G  +  +   D   G L++++  GKR
Sbjct: 63  ES--FGALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTMIAPGKR 120

Query: 131 AATMDISISSAVGGMIKPNDHVDVV 155
           A T+ ++ ++AVG  ++P  +VD++
Sbjct: 121 ALTLPVNAAAAVGHFVEPGSYVDIL 145


>gi|54309659|ref|YP_130679.1| hypothetical protein PBPRA2495 [Photobacterium profundum SS9]
 gi|46914097|emb|CAG20877.1| Hypothetical protein PBPRA2495 [Photobacterium profundum SS9]
          Length = 284

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 20/176 (11%)

Query: 9   IVVSGVFALVAGIIAM--RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           I V    A++ G+  M   L+S     +  V  E   K+I V  +   LA G  ++P+ L
Sbjct: 6   IFVIAFLAVLTGLYGMADTLLSTTDTASPPVTEEKEIKYITVWRATSALARGQTLSPSSL 65

Query: 67  EWVAFPEENVFD-GFIDDV---HQPNAMQELD---GVLVRVPILKGDPIRLEKLVDRGNG 119
                 EE     G   DV    +P  +  +D   G LV  P L+  P         G  
Sbjct: 66  TREQLTEEAALSLGINSDVTLNFEPTTLMNMDVKQGALV-FPELQTSP---------GQA 115

Query: 120 GLSSLLPKGKRA-ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174
           G  +L+ +G      + I+  + +   I+P D++D++ V S        T  L N 
Sbjct: 116 GYLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENF 171


>gi|37680195|ref|NP_934804.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
 gi|37198942|dbj|BAC94775.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
          Length = 279

 Score = 39.3 bits (90), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 18/122 (14%)

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTVTV 169
           LS+L+  G RA ++++   +A  G+++P + VDV++  S SE               V  
Sbjct: 119 LSALVKPGMRAISIELDPMAAGLGLLRPGNKVDVLLT-SQSEIDQDANGTPIYNNMAVET 177

Query: 170 VLSNIRVIAIDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           VL NI ++AI +        +   +    ++ T E++   A+ LV A  + +LSLVLR  
Sbjct: 178 VLQNIHLLAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGN 237

Query: 224 AD 225
            D
Sbjct: 238 ND 239


>gi|27365650|ref|NP_761178.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
 gi|320156052|ref|YP_004188431.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O]
 gi|27361798|gb|AAO10705.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
 gi|319931364|gb|ADV86228.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O]
          Length = 279

 Score = 39.3 bits (90), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 18/122 (14%)

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTVTV 169
           LS+L+  G RA ++++   +A  G+++P + VDV++  S SE               V  
Sbjct: 119 LSALVKPGMRAISIELDPMAAGLGLLRPGNKVDVLLT-SQSEIDQDANGTPIYNNMAVET 177

Query: 170 VLSNIRVIAIDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           VL NI ++AI +        +   +    ++ T E++   A+ LV A  + +LSLVLR  
Sbjct: 178 VLQNIHLLAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGN 237

Query: 224 AD 225
            D
Sbjct: 238 ND 239


>gi|325111215|ref|YP_004272283.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
 gi|324971483|gb|ADY62261.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
          Length = 349

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 12/118 (10%)

Query: 125 LPKGKRAATMDISIS-SAVGGMIKPNDHVDVVMVRS--LSE---RKPTVTVVLSNIRVIA 178
           L  G +A T+ +  S S V G+I+P D+VDV +  S  LS+   R      V   IRV+A
Sbjct: 115 LEPGMQAVTVSLGDSTSVVDGLIEPGDYVDVHLTVSDDLSDSRYRGGFTMTVFKGIRVLA 174

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           ++            +T T ELTP Q+  ++ AQ    +++        NP    D  V
Sbjct: 175 MNRLTQPTNISRGANTVTFELTPSQSNIILEAQRHGTITV------SYNPDGPGDGGV 226


>gi|94312585|ref|YP_585794.1| pilus assembly protein [Cupriavidus metallidurans CH34]
 gi|93356437|gb|ABF10525.1| pilus assembly protein [Cupriavidus metallidurans CH34]
          Length = 319

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 13/119 (10%)

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKP--TVTVVLSNIRV 176
           GL+  +P G RA  + +     VG  ++P D VDV V++R  S+  P     ++LS +RV
Sbjct: 106 GLARQIPDGARAMAVAVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLLSRLRV 165

Query: 177 IAI------DHNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +A       +      E+++       TA L +   Q   LV AQ   +L L LR+  D
Sbjct: 166 LAYGTGAVNEAPKQQGEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTD 224


>gi|255020087|ref|ZP_05292158.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC
           51756]
 gi|254970449|gb|EET27940.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC
           51756]
          Length = 419

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           I  ++   D+A G ++  +++   + P     D    DV  P    +  G  V VP+L+G
Sbjct: 66  IKAVVPVQDIAPGTILDLSMVAARSIPA----DTAPSDVITPETFDQYAGHRVNVPLLQG 121

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
            PI    L  R    L+ ++   K A T  +   S + G+++P DHVDV+
Sbjct: 122 RPILASYLSGRRT--LADIVDPDKLAMTFTVDNVSTLDGLLQPGDHVDVL 169


>gi|254429646|ref|ZP_05043353.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881]
 gi|196195815|gb|EDX90774.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881]
          Length = 278

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVI 177
           G L   LP G RA  + +      GG+++P D VDVV+  R +    P   V+L NI+V+
Sbjct: 109 GTLPGALPTGFRAVGVAVDDVVMAGGLLQPGDLVDVVVAFRKVERDNPAALVLLRNIQVL 168

Query: 178 AI 179
           A+
Sbjct: 169 AV 170


>gi|328952515|ref|YP_004369849.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM
           11109]
 gi|328452839|gb|AEB08668.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM
           11109]
          Length = 357

 Score = 38.5 bits (88), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIA 178
           L+  +P G RA ++ +   + V   +   D VDV+    L  S       +VL  ++V  
Sbjct: 53  LTENIPVGMRAVSIKVDEVTGVSRKVIKGDWVDVLATTPLPGSPHTSVARLVLDRVQVFD 112

Query: 179 I----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           +    D    S ++     T TL +TP Q   L+AA S AK+SL+ R   D  P +  D
Sbjct: 113 VTLEADTKGQSKQKGEKDWTVTLLVTPDQGATLLAAASQAKISLLARQANDARPHNFRD 171


>gi|119773844|ref|YP_926584.1| Flp pilus assembly protein CpaB-like protein [Shewanella
           amazonensis SB2B]
 gi|119766344|gb|ABL98914.1| Flp pilus assembly protein CpaB-like protein [Shewanella
           amazonensis SB2B]
          Length = 298

 Score = 38.5 bits (88), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%)

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142
           D  +P+   E+ G ++   +  G P+    L        S LL +G+RA T+DI+  ++ 
Sbjct: 83  DAIRPSQFNEVAGQMLLSEMSPGRPLISAYLPGFKTRQFSDLLQEGQRAVTIDINEENST 142

Query: 143 GGMIKPNDHVDVVM 156
            GM+ P+D VD+ +
Sbjct: 143 AGMLVPSDLVDLFL 156


>gi|296158513|ref|ZP_06841343.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
 gi|295891081|gb|EFG70869.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
          Length = 365

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 31/187 (16%)

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
            DD+ + +  ++     +  P+ +G P+R   +        S +L  G RA T++I   +
Sbjct: 87  YDDMIRADGFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDFSDILRPGTRALTVEIDTVN 146

Query: 141 AVGGMIKPNDHVDVVMV------RSLSERKPTVTVVLSNIRVIAIDHNID---------- 184
           +   +++P + VDV  V         S+ K    +V+ N+ V+A   ++           
Sbjct: 147 STALLLRPGNRVDVYWVGKVFHENRTSDEKKVAQLVMPNVLVLATGEDMRPRDAGEAAQQ 206

Query: 185 ----------SDERVLVGSTATLELTPMQAKALVA-AQSVAKLSLVLRSIADL---NPSS 230
                     S +  +  +T TLE+ P+   A +A AQ +  L L+LR+  D     PS 
Sbjct: 207 DQANANSSAMSRQTGMGYTTVTLEV-PVDDVARIALAQKIGGLRLILRNSEDKGADGPSL 265

Query: 231 SEDSDVW 237
           +++SDV+
Sbjct: 266 AQESDVF 272


>gi|83589202|ref|YP_429211.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073]
 gi|83572116|gb|ABC18668.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073]
          Length = 229

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 29/174 (16%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++ I+     A+ +GI   R +S H   T+ ++   PA  IN             + P  
Sbjct: 21  ILAIIFGLAVAVASGIYYQRYISTHQAMTQVIV---PAHNINAYTQ---------IKPGD 68

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
           L W   P   V  G      +P+   +L G +    + +G+ +RLE++     G +S+  
Sbjct: 69  LTWRQVPVGAVEPG---TARKPD---DLVGKVALAELYQGEQVRLERV-----GEVST-- 115

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
              K+   ++I ++ + GG   P D VDV      +E  P   ++ SN R++ +
Sbjct: 116 -DDKQVVAVNIDLARSGGGYFSPGDLVDVYFAE--TENVPG-AILASNARLLQL 165


>gi|188592031|ref|YP_001796629.1| flp pilus assembly cpab [Cupriavidus taiwanensis LMG 19424]
 gi|170938405|emb|CAP63392.1| putative Flp pilus assembly CpaB [Cupriavidus taiwanensis LMG
           19424]
          Length = 316

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 13/119 (10%)

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKP--TVTVVLSNIRV 176
           GL++ +P+G+RA  + +     VG  ++P D+VDV +V R   +  P     ++LS +RV
Sbjct: 106 GLAAQVPEGERAVAVSVDEVIGVGNQVQPGDYVDVFLVLRRDQQEIPDSQARMLLSRLRV 165

Query: 177 IAI-------DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +A           +  ++   R     TA L +   Q   L  AQ   +L L LR+  D
Sbjct: 166 LAYGVASVNRPQAVKPEQMMARQEGAKTAVLSVPLEQVSRLAMAQHSGRLMLALRNPQD 224


>gi|194745344|ref|XP_001955148.1| GF16392 [Drosophila ananassae]
 gi|190628185|gb|EDV43709.1| GF16392 [Drosophila ananassae]
          Length = 268

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQA 204
           M K +  V  + VRS  ++ P +    S  R  + D  ID+ E  + G   ++ L    A
Sbjct: 63  MSKDSYQVSNLEVRSNGQKTPAI----SEARASSADGFIDAIENYIRGHDVSMNLPLADA 118

Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252
           K  V+A+++A   L L    +L  +  E  D  DV+  GK+  I K G
Sbjct: 119 KVTVSARNLANNQLSL----NLQLNGDESDDATDVEARGKKGNIFKKG 162


>gi|197335888|ref|YP_002155268.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
 gi|197317378|gb|ACH66825.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
          Length = 270

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 38/235 (16%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-------INVLISKGDLAVGMVV 61
           I+V  V A+  G+  M   S     TE  ITE   +F       + V I+K DL  G +V
Sbjct: 6   ILVLAVIAISIGLYGMSQTST----TESPITEKVQEFDKLPEPTVMVWIAKKDLMFGSLV 61

Query: 62  TPNILE--WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
               LE   ++  + + F G   DV + N  ++L   L++  IL+GD +  + ++  G  
Sbjct: 62  QRTDLEVQRISQTQADRF-GIAHDV-KFNFNKKL---LIKKDILQGDIVTSDMVLSPGQE 116

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI---- 174
           G L+ ++ +GK    +++S  + +GG I   D VD+  + S SE+  +    +SN+    
Sbjct: 117 GYLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISS-SEQNLSNDASISNVQSLK 175

Query: 175 ------RVIAIDHNIDSDERVLVGSTAT-------LELTPMQAKALVAAQSVAKL 216
                 +++ +D  I  ++ V + S +T       LE++  +   LV AQ +A+L
Sbjct: 176 MAPLLTQIMVLDI-IQQEKPVRLNSKSTKTVTTLVLEVSNRELAKLVIAQRIAEL 229


>gi|269926136|ref|YP_003322759.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789796|gb|ACZ41937.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 258

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 28/214 (13%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEE----NVFDGFIDDVHQPNAMQELDGVLVR 99
           K + V+++  D+A G  +T ++LE   FP +           D V++ +A   + G ++ 
Sbjct: 39  KQVQVVVAAQDIAQGSPITASMLETKPFPADFAPSEAVSSINDAVNRYSATNIVKGQIIT 98

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-- 157
            P+L            +  G L+  +PKGK A  +  S   +  G I+P D VDV++   
Sbjct: 99  RPLLSDT---------KQVGKLALSIPKGKVAFALPASDLLSGNGQIQPGDRVDVLVTFF 149

Query: 158 ----------RSLSERKPTVTVVLSNIRVI-AIDHNIDSDERVLVGSTATLELTPMQAKA 206
                     ++  E + T    L ++ V+  +     SD          L + P QA  
Sbjct: 150 VKMTSIGPDGQTSDEERATTQTTLQDLEVLDVLGTGAGSDGGNAKSPAVVLLVDPQQAVT 209

Query: 207 LVAAQSVAK--LSLVLRSIADLNPSSSEDSDVWD 238
           L  A+   K  + L LR  +D +     D +  D
Sbjct: 210 LKLAKDSDKAVIDLALRGSSDDHKQHETDGETED 243


>gi|198284414|ref|YP_002220735.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667886|ref|YP_002427082.1| hypothetical protein AFE_2705 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248935|gb|ACH84528.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218520099|gb|ACK80685.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 323

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 27/178 (15%)

Query: 14  VFALVAGIIAMRLVSPHHV---QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           + A+  G+ A  +  P  V   +T     + P   + V+++   L+ G  + P+ ++ + 
Sbjct: 14  LLAIALGVSAYLVSQPSPVVQSKTSAAAPQQPTAGVAVVVAAKTLSAGFPIPPDGVKVLH 73

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVP---ILKGDPIRLEKLVDRGNGGLSSLLPK 127
           +PE   F           A  E   V+ +VP   I  G P+    L+     GL++ +P+
Sbjct: 74  YPE---FPA--------GAFHETAHVVGKVPQVNIGMGAPVMSSNLLS----GLATQVPE 118

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVT-VVLSNIRVIAI 179
           G  A  +D++ + AVG  ++P D+VDV         ++    PT + ++L+++RV+A+
Sbjct: 119 GDVAMAIDVNKAIAVGDHLQPGDYVDVFTTLAGDQMTMHGGWPTQSRLLLADLRVLAV 176


>gi|258515698|ref|YP_003191920.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779403|gb|ACV63297.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
          Length = 247

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 25/193 (12%)

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-----SSLLPKG 128
           EN+    I     PN+ Q L G + R  I  G P+  + L   G G L     S      
Sbjct: 65  ENIPKAAIKQGMFPNS-QNLIGKVTRTVIPAGYPVSKDFLAIEGPGSLLTTQISQFKDPK 123

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNIRVIAIDHNIDS 185
            RA  + +   +A+ G I P D VDVV    L     ++P    +   + VIA+    + 
Sbjct: 124 LRATPVTVQGVNALDGKIMPGDRVDVVGNMKLPMGGLQQPVSQTIGVQVPVIAVTGEPNK 183

Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI------ADLNPSSSEDSDVWDV 239
              V++G      LTP QA+ +  A++   + L L         A   P++S+      +
Sbjct: 184 PTGVILG------LTPQQAQDVGFAETAGTIKLSLNPYQPDTNAARTTPTTSQSFIEKYI 237

Query: 240 QEEGKEIQIIKAG 252
           Q++    Q I AG
Sbjct: 238 QQQ----QQINAG 246


>gi|33600810|ref|NP_888370.1| hypothetical protein BB1825 [Bordetella bronchiseptica RB50]
 gi|33568410|emb|CAE32322.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 313

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 30/189 (15%)

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           + L G +VR  I  G+P+    L      GL+  L  G+RA T+ +   S     I P D
Sbjct: 86  EALLGQMVRQDIPAGEPVTAPMLAR----GLARHLAPGERAVTIAVDELSGAQNRILPGD 141

Query: 151 HVD--VVMVRSLSERKPTVTVVLSNIRVIA-----IDHNIDSDERVLVGSTATLELTPMQ 203
            VD  VVM R +        ++ S I+V+A     +D     +E+  V         P  
Sbjct: 142 LVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRN 201

Query: 204 A---------KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ--EEGKEIQIIKAG 252
           A           L+ A    +L LVLR        S ED DV D+    E   +  ++AG
Sbjct: 202 AMLAVPVERVNELLLAAKAGRLQLVLR--------SPEDVDVPDLALFPERAPVLALRAG 253

Query: 253 VIVNKDGEG 261
           +   +  +G
Sbjct: 254 LTAEQQRDG 262


>gi|87308905|ref|ZP_01091043.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645]
 gi|87288248|gb|EAQ80144.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645]
          Length = 299

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 17/224 (7%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG--DLAVGMVVTPNILEWVA 70
           GV A++ G+++  +V  + ++    + E  A     ++ K   +L  G  +T   +    
Sbjct: 3   GVVAVMFGLLSAYVVRKNMMKETPPVVETTAPPKTFVVPKAAVNLPAGRTLTLGDVVIYQ 62

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGK 129
           + E+ + +  +   +  NA Q + G  +R  + +      +     G G G+   L  G+
Sbjct: 63  YTEKQLEEQPLPTGYMVNATQ-IIGRTLRQELTEKSVFTPDMFYPEGTGPGIVQNLGAGQ 121

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSL---SERKPTVTVVLSNIRVIAID------ 180
           RA T+ I    AV G  +P   VDV+        +E   T   +L +++V+A D      
Sbjct: 122 RAFTVRIEYDEAVEGFARPGTKVDVLFRAEADPENELAETTVTLLQDVKVLAFDSSPSAL 181

Query: 181 HNIDSDE----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           H I +++    R+   +T TL + P +A  L  A      +L L
Sbjct: 182 HPIVNEQSQRLRMREYATVTLAVLPHEATKLQVADDHGTFALAL 225


>gi|56460013|ref|YP_155294.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR]
 gi|56179023|gb|AAV81745.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR]
          Length = 235

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 5/145 (3%)

Query: 14  VFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
           +F+ +  ++ + L++ +  Q T   + E      +V++   DL VG ++  + L    +P
Sbjct: 12  IFSSIISMVTIFLINQYLQQETSRRLQEASGNADSVVVFSKDLNVGDILEVSDLLVRKYP 71

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
            E + + +    +  +A   + G  +R  +  G+P+    L +  N GLS +LP G  A 
Sbjct: 72  HELINEHW----YLESAANLIIGRKLRSSVKSGEPVSERVLSNNQNNGLSEVLPNGYYAI 127

Query: 133 TMDISISSAVGGMIKPNDHVDVVMV 157
           T+          ++K  D VD+V V
Sbjct: 128 TVTTDNLGHHNALLKVGDLVDIVFV 152


>gi|304315801|ref|YP_003850946.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777303|gb|ADL67862.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 213

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 11/107 (10%)

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179
           +L +G R  T+ +++ S++ G IKP D VDV       E+     V+ + + +  I    
Sbjct: 105 VLKEGMRRVTISVNLESSLAGKIKPGDLVDVGWAPKSDEKGENGAVIANKVEIYDIVNKS 164

Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                  D N   D   L+ +  TL +TP QA A+   ++   L L+
Sbjct: 165 GGDIKKADKNNQYDTDSLLPAAVTLIVTPEQAIAIKEYEAKGSLFLM 211


>gi|33596968|ref|NP_884611.1| hypothetical protein BPP2375 [Bordetella parapertussis 12822]
 gi|33566419|emb|CAE37672.1| putative membrane protein [Bordetella parapertussis]
          Length = 313

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 30/189 (15%)

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           + L G +VR  I  G+P+    L      GL+  L  G+RA T+ +   S     I P D
Sbjct: 86  EALLGQMVRQDIPAGEPVTAPMLAR----GLARHLAPGERAVTIAVDELSGAQNRILPGD 141

Query: 151 HVD--VVMVRSLSERKPTVTVVLSNIRVIA-----IDHNIDSDERVLVGSTATLELTPMQ 203
            VD  VVM R +        ++ S I+V+A     +D     +E+  V         P  
Sbjct: 142 LVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRN 201

Query: 204 A---------KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ--EEGKEIQIIKAG 252
           A           L+ A    +L LVLR        S ED DV D+    E   +  ++AG
Sbjct: 202 AMLAVPVERVNELLLAAKAGRLQLVLR--------SPEDVDVPDLALFPERAPVLALRAG 253

Query: 253 VIVNKDGEG 261
           +   +  +G
Sbjct: 254 LTAEQQRDG 262


>gi|33593024|ref|NP_880668.1| hypothetical protein BP1995 [Bordetella pertussis Tohama I]
 gi|33563399|emb|CAE42275.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332382436|gb|AEE67283.1| hypothetical protein BPTD_1965 [Bordetella pertussis CS]
          Length = 313

 Score = 37.0 bits (84), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 30/189 (15%)

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           + L G +VR  I  G+P+    L      GL+  L  G+RA T+ +   S     I P D
Sbjct: 86  EALLGQMVRQDIPAGEPVTAPMLAR----GLARHLAPGERAVTIAVDELSGAQNRILPGD 141

Query: 151 HVD--VVMVRSLSERKPTVTVVLSNIRVIA-----IDHNIDSDERVLVGSTATLELTPMQ 203
            VD  VVM R +        ++ S I+V+A     +D     +E+  V         P  
Sbjct: 142 LVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRN 201

Query: 204 A---------KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ--EEGKEIQIIKAG 252
           A           L+ A    +L LVLR        S ED DV D+    E   +  ++AG
Sbjct: 202 AMLAVPVERVNELLLAAKAGRLQLVLR--------SPEDIDVPDLALFPERAPVLALRAG 253

Query: 253 VIVNKDGEG 261
           +   +  +G
Sbjct: 254 LTAEQQRDG 262


>gi|104779899|ref|YP_606397.1| Flp pilus assembly protein CpaB [Pseudomonas entomophila L48]
 gi|95108886|emb|CAK13582.1| putative Flp pilus assembly protein CpaB [Pseudomonas entomophila
           L48]
          Length = 316

 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 89  AMQELDGVLVRV---PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
           A Q+LD VL R    P+  G    L+    +  G L+ ++   +RA  + +       G 
Sbjct: 94  AFQQLDQVLGRSSSRPLAAGS--WLDDSSFQAGGPLARMIRANERAVAVAVDDVIGAAGQ 151

Query: 146 IKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIAIDHN 182
           ++P D VDV++        P  +  VVL  +RV+++DH 
Sbjct: 152 LRPGDFVDVLLFLREENNNPQSSAQVVLPALRVLSVDHQ 190


>gi|330816714|ref|YP_004360419.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3]
 gi|327369107|gb|AEA60463.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3]
          Length = 305

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 37/244 (15%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           LT+++ + +  + AL+ GI A  L               PAK   V+++   L  G  + 
Sbjct: 5   LTKILAVALIAI-ALLLGIFAWVLGRKPAPVVNNAQQATPAKLFPVVVAARPLKGGQPIP 63

Query: 63  PNIL---EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            + L   +  A PE      F D V           ++ RVPI    P +   L    + 
Sbjct: 64  ADGLKVQQAAALPE----GAFADPVQ----------IVGRVPIAD-VPEQAAVLESSLSS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVT---------- 168
           G++  +  G+RA  + +  ++AVG  ++P + VDV + ++  S    T+           
Sbjct: 109 GVADQIAPGERAIAVKVDETNAVGNKVRPGNFVDVFLNLKKDSAAGTTLAGNGGSEVPKT 168

Query: 169 ---VVLSNIRVIAIDHNI---DSDERVLVG-STATLELTPMQAKALVAAQSVAKLSLVLR 221
              ++LS IRVIA        DS    L G  TA L +   Q  AL   ++   L+L LR
Sbjct: 169 QAKLLLSRIRVIAFGDATTARDSSGGALNGVRTAVLAVPAAQVDALTLGEASGSLTLALR 228

Query: 222 SIAD 225
           +  D
Sbjct: 229 NPRD 232


>gi|107022593|ref|YP_620920.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116689542|ref|YP_835165.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
 gi|170732846|ref|YP_001764793.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
 gi|105892782|gb|ABF75947.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116647631|gb|ABK08272.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
 gi|169816088|gb|ACA90671.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
          Length = 301

 Score = 36.6 bits (83), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 17/123 (13%)

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV----------VMVRSLSERKPTVT- 168
           GL+  L  G+RA  + +  ++AVG  ++P ++VDV          V +   S  +   T 
Sbjct: 108 GLAEQLAPGERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQ 167

Query: 169 --VVLSNIRVIAIDHNI---DSDERVLVGS-TATLELTPMQAKALVAAQSVAKLSLVLRS 222
             +++S +RV++        DS    +VG+ TA L +   Q  AL  A+   +L L LRS
Sbjct: 168 ARLLMSKVRVLSFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRS 227

Query: 223 IAD 225
             D
Sbjct: 228 PRD 230


>gi|114321312|ref|YP_742995.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227706|gb|ABI57505.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 316

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 29/164 (17%)

Query: 91  QELDGVLVRVPILKGDPIRLEKL-----VDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
           +E+ G+ V  PI +G+ +   +      V RG      LLP G+RA  + +     VGG 
Sbjct: 93  EEVIGLRVEAPIQEGELLTAPRFSVASQVSRG------LLP-GERAVAISVDDVIGVGGY 145

Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI-------------DSDERVLVG 192
           + P D VDV++  S         ++  NIRV+A   ++             +  +R    
Sbjct: 146 LSPGDRVDVMLYLSQRGVGEIGRLLHPNIRVLAYGEDLAIPPDGVVDRRDEEGTQRQRGA 205

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSI----ADLNPSSSE 232
            TA L L       L+ A S   L L  R       D +P + E
Sbjct: 206 RTAVLALPEEDVATLLLADSAGTLRLAARPAIERRPDFDPEAFE 249


>gi|317403506|gb|EFV84009.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54]
          Length = 226

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 19/146 (13%)

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG--MIKPND 150
           L G   RV I  GDP+    L      GL   L  G+RA    I++   VGG   I P D
Sbjct: 73  LQGAYARVDIAAGDPLLPSMLAQ----GLGRQLKPGERAVA--IAVDEVVGGGNRIAPGD 126

Query: 151 HVDVVMV--RSLSERKPTVTVVLSNIRVIAID-HNIDS--DERVLVGS------TATLEL 199
            VDV  +  + +  +     ++ S +RV+A    ++D   D+  L G       TA L +
Sbjct: 127 LVDVFFLLEKGVEIQAGQARLLQSRVRVLAYGTASVDGPEDKGTLPGPPGQPARTAVLAV 186

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIAD 225
              Q   L+ A    +L L LR + D
Sbjct: 187 PVEQVSELLLAGRSGRLQLALRPVGD 212


>gi|294146465|ref|YP_003559131.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
 gi|292676882|dbj|BAI98399.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
          Length = 302

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 27/141 (19%)

Query: 108 IRLEKLVDRGNGGLSSLL----PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----- 158
           I L  L+ R   G+ S L    P G RA ++D +   AV G+I+P D VDV +V      
Sbjct: 98  IGLHALIARDAVGMESKLAIRVPMGMRAISIDTTAEIAVAGLIRPGDRVDVQVVYPGADA 157

Query: 159 ---SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS---------------TATLELT 200
              +    +     +L  ++V+A+   +   ++    +               T TL LT
Sbjct: 158 ISGARGSGRSRAQALLQMVQVLAVGEVVVGTQQASGANGGVEGALSSPPPPARTVTLALT 217

Query: 201 PMQAKALVAAQSVAKLSLVLR 221
           P Q   L  A+++  L+L LR
Sbjct: 218 PEQVSILSLAKNIGALTLSLR 238


>gi|187921505|ref|YP_001890537.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
 gi|187719943|gb|ACD21166.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
          Length = 366

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 29/166 (17%)

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
           P+ +G P+R   +        S +L  G RA T+DI   ++   M++P + VDV  +  +
Sbjct: 107 PVRRGLPLRAADIDALHGRDFSDVLRSGTRAVTVDIDTVNSTALMLRPGNRVDVYWIGKV 166

Query: 161 SER------KPTVTVVLSNIRVIAIDHNI---DSDERVL----------------VG-ST 194
             +      K    ++L+N  ++A   ++   D+ E +                 VG +T
Sbjct: 167 YHQDNSNDDKKVAQLMLANTLILATGQDMRPRDAGEAMQEDPANANSSAMSRQPGVGYTT 226

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL---NPSSSEDSDVW 237
            TLE+    A  +  AQ +  L L+LR+  D     PS  +++DV+
Sbjct: 227 VTLEVPVADAGRIALAQKIGGLRLILRNSDDKGTNGPSLVQENDVF 272


>gi|323529160|ref|YP_004231312.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
 gi|323386162|gb|ADX58252.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
          Length = 363

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 39/80 (48%)

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
           D   DD+ +P    +     +  P+ +G P+R   +        S +LP G+RA T++I 
Sbjct: 84  DLVYDDMVRPENFDQYRASHLVKPVRRGLPLRAADIDALHGRDFSDVLPAGQRAVTVEID 143

Query: 138 ISSAVGGMIKPNDHVDVVMV 157
             ++   +++P + VDV  +
Sbjct: 144 TVNSTALLLRPGNRVDVYWI 163


>gi|312621079|ref|YP_003993807.1| flp pilus assembly protein rcpc/cpab [Photobacterium damselae
           subsp. damselae]
 gi|311872800|emb|CBX86891.1| Flp pilus assembly protein RcpC/CpaB [Photobacterium damselae
           subsp. damselae]
          Length = 267

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 38/231 (16%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +++ G++ L     A  L +P      E I E P   I V     D+  G  +  N+L  
Sbjct: 13  VILFGLYGL-----ATNLSNPTSPANHEPIKEEPK--IRVWKLNKDVHPGEFIERNMLSV 65

Query: 69  VAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLP 126
              PE      GF+DDV+    +      + +  +  G  + ++ LV    +G +  ++ 
Sbjct: 66  ENIPESEANGLGFVDDVN----LDWKAKTVFKSHLSAGSLLTIDDLVQPDQDGYIDFIID 121

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------------SERKPTVTVVLSN 173
           + K    + ++ SS +GG+I     VD++ +  L             S+   ++T ++S 
Sbjct: 122 ENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLTGTASNFGNNSGSSKNTVSITPIISA 181

Query: 174 IRVIAIDHNI--------DSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           ++V+ + H +         SDE+V    T  +ELT  QA  L  AQ ++++
Sbjct: 182 VKVLLVKHQLIDTNRQSDTSDEQV----TLVVELTRKQAVVLTVAQRISEI 228


>gi|187251613|ref|YP_001876095.1| pilus assembly protein [Elusimicrobium minutum Pei191]
 gi|186971773|gb|ACC98758.1| Pilus assembly protein [Elusimicrobium minutum Pei191]
          Length = 253

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 62/257 (24%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEE---------VITENPAKFINVLISKGDLAVG 58
           G+ +  V A++A ++   ++  +  + EE          I + P + +   I+KGDL  G
Sbjct: 4   GVFLPLVIAILAAVVYFIILFSNQSKFEENSKLERVVIAIRDLPERKV---ITKGDL--G 58

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV-RVPILKGDPIRLEKLVDRG 117
           ++  PN      F +++ F      V + + + +L+  LV R+ I KG+ +         
Sbjct: 59  VIEMPN-----KFLQKDAFT-----VTRDSDITKLENNLVTRIAIPKGNQV--------S 100

Query: 118 NGGLSSLLPKGKRAATMD--------ISISSAVGGMIKPNDHVDVVM-----VRSLSERK 164
              L+SL P+   +A +           + S+V  +IKP+D VDV++     +++  +++
Sbjct: 101 KAALTSLSPEAGLSARVSPLWRGFVLTDVPSSVANLIKPDDWVDVLLTFDAYMKNTGQKE 160

Query: 165 PTVTVVLSNIRVIAIDHNID----------SDERVLVGSTA------TLELTPMQAKALV 208
                +L  I+V+ + +++           + ER    S        +L L P  A+ L 
Sbjct: 161 KITATILQRIKVLGVGNDLGQGMDANQLRATREREASASAFNDSSAISLALHPRDAQYLA 220

Query: 209 AAQSVAKLSLVLRSIAD 225
            A+    ++LV+R   D
Sbjct: 221 LAKEEGIITLVVRRRED 237


>gi|269105131|ref|ZP_06157825.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268160581|gb|EEZ39080.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 267

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 38/231 (16%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +++ G++ L     A  L +P      E I E P   I V     D+  G  +  N+L  
Sbjct: 13  VILFGLYGL-----ATNLSNPTSPANHEPIKEEPK--IRVWKLNKDVHPGEFIERNMLSV 65

Query: 69  VAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLP 126
              PE      GF+DDV+    +      + +  +  G  + ++ LV    +G +  ++ 
Sbjct: 66  ENIPESEANGLGFVDDVN----LDWKAKTVFKSHLSAGSLLTIDDLVQPDQDGYIDFIID 121

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------------SERKPTVTVVLSN 173
           + K    + ++ SS +GG+I     VD++ +  L             S+   ++T ++S 
Sbjct: 122 ENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLNGTASNFGNNSGSSKNTVSITPIISA 181

Query: 174 IRVIAIDHNI--------DSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           ++V+ + H +         SDE+V    T  +ELT  QA  L  AQ ++++
Sbjct: 182 VKVLLVKHQLIDTNRQSDTSDEQV----TLVVELTRKQAVVLTVAQRISEI 228


>gi|224539927|ref|ZP_03680466.1| hypothetical protein BACCELL_04839 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518481|gb|EEF87586.1| hypothetical protein BACCELL_04839 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 382

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQA--KALVAAQSVAKLSLVLRS-----IAD 225
           ++R +A + + D D  V+V  T  +ELT  +      + A  V +L LV+R+     + D
Sbjct: 225 SVRAVAGNTSADLDLEVVVTGTYQMELTTPRGLLSTEITAGDVKRLELVVRNTGSSLLKD 284

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKAG 252
           +  SS +  D W+V  E  +I+I+KAG
Sbjct: 285 IQLSSGKPKD-WEVSFEPAKIEILKAG 310


>gi|72162670|ref|YP_290327.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX]
 gi|71916402|gb|AAZ56304.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX]
          Length = 258

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNI 183
           L  G+R   + I+  + V G +     VDV      +E+ P   + VL+N+ V+ +  +I
Sbjct: 117 LENGEREIAIMINAETGVAGKVSRQSRVDVYASFQANEQSPACAIRVLTNVEVLDV-GDI 175

Query: 184 DSDERVLVGST-----ATLELTPMQAKALVAAQSVA---KLSLV 219
            S      G T      T  LTP QA  L  A+S A   +L+LV
Sbjct: 176 GSQIDAQTGGTNTVVPVTFRLTPQQALQLTYAESFASKVRLALV 219


>gi|187935275|ref|YP_001885712.1| PTS system, beta-glucoside-specific IIABC component [Clostridium
           botulinum B str. Eklund 17B]
 gi|187723428|gb|ACD24649.1| PTS system, beta-glucoside-specific IIABC component [Clostridium
           botulinum B str. Eklund 17B]
          Length = 626

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           +  ++G   +G++A ++G++    VSP        I ENP   I+ LI+    A+  VVT
Sbjct: 384 IAAMIGGGCAGIYAGLSGLVRYAFVSPGLAALPAFIGENPMNIIHALIT---CAIAFVVT 440

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQ-------ELDGVLVRVPILKGDPIRLEKLVD 115
              L W+   E+ + D   ++V + N+ +       E++G +  V  L G  I L K+ D
Sbjct: 441 -FALTWIIGFEDPIDD---EEVKENNSTEIKSEEKVEINGSMEIVSPLSGKLIPLSKVND 496

Query: 116 RGNGGLSSLLPKG 128
               G   LL KG
Sbjct: 497 DVFSG--ELLGKG 507


>gi|158337969|ref|YP_001519145.1| bifunctional protein FolD [Acaryochloris marina MBIC11017]
 gi|190359419|sp|B0C3J3|FOLD_ACAM1 RecName: Full=Bifunctional protein FolD; Includes: RecName:
           Full=Methylenetetrahydrofolate dehydrogenase; Includes:
           RecName: Full=Methenyltetrahydrofolate cyclohydrolase
 gi|158308210|gb|ABW29827.1| bifunctional protein FolD [Acaryochloris marina MBIC11017]
          Length = 295

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 32/137 (23%)

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPI------------------LKG-DPIRLE 111
           FP E  F+     +H  NA  ++DG+LV++P+                  + G  P+ L 
Sbjct: 73  FPAEVTFEEVKQTIHDLNANPQVDGILVQLPLPAHLDSTALLYEIDPDKDVDGLHPLNLG 132

Query: 112 KLVDRGNGGLSSLLPKG--KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169
           +LV RG  GL S  P G  +  A  D+ +S           H  VV+ RS+   KP   +
Sbjct: 133 RLV-RGEAGLRSCTPAGVMRLLAAYDVELSGL---------HA-VVIGRSILVGKPVSLM 181

Query: 170 VLSNIRVIAIDHNIDSD 186
           +L+    + + H+   D
Sbjct: 182 LLAANATVTMAHSRTPD 198


>gi|170701751|ref|ZP_02892687.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
 gi|170133334|gb|EDT01726.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
          Length = 301

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 34/153 (22%)

Query: 119 GGLSSLLPK----GKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKP 165
           GGL+S L      G+RA  + +  S+AVG  ++P + VDV +          ++ SE   
Sbjct: 104 GGLTSGLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQATSEIPA 163

Query: 166 T-VTVVLSNIRVIAI-DHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVL 220
           T   ++LS +RV++  D   D D          TA L +   Q  AL  A++  +L+L L
Sbjct: 164 TQARLLLSKVRVLSFGDATSDRDGGGGPSGAVRTAVLAVPTAQVDALTLAEASGRLTLAL 223

Query: 221 RSIADL----------------NPSSSEDSDVW 237
           R+  D                  PS+   S VW
Sbjct: 224 RNPRDTEIATQTVAVRTGGGEATPSAQAASGVW 256


>gi|317403406|gb|EFV83919.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54]
          Length = 279

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 16/191 (8%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           E+    ++ L++  DL  G  +TP  L     P +      I    +P     + G  + 
Sbjct: 45  EHREAMVSRLVAARDLPAGTELTPAHLAIRDIPAQWAPAASI----EPRDGDSVLGTRLG 100

Query: 100 VPILKGDPIRLEKLVDRGNGG----LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           + + +GDP+ L   + R +      L++ L  G+RA  + ++    V  +++  D VD+ 
Sbjct: 101 LALAQGDPV-LSGCLARADSASPPALAARLDPGQRALQVPVADLGTVADLLRVGDLVDIY 159

Query: 156 MVRSLSERKPTVTV-VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
           +  S   R   VT  +L  +RV+A+           V    TL  TP QA   +AA+   
Sbjct: 160 V--SFPHRGREVTTPLLQGVRVLAVPDAGGGTGPAQV----TLAATPNQAMRYLAARRAG 213

Query: 215 KLSLVLRSIAD 225
            L+ ++R+ AD
Sbjct: 214 TLTGLVRNRAD 224


>gi|257064753|ref|YP_003144425.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM
           20476]
 gi|256792406|gb|ACV23076.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM
           20476]
          Length = 273

 Score = 35.8 bits (81), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 20/220 (9%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           + GI+     AL   + A +L +    Q  E +     +   V ++  D+A G  V    
Sbjct: 8   VFGILCGIACALCVAMYAQQLQADADAQRAEALARYGGEQTEVWVATRDIAPGETVDETN 67

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV---PILKGDPIRLEKLVDRGNGGLS 122
            E         +  ++ ++   +A+ +L G+  RV   PI++G+ I  ++ V   +  L 
Sbjct: 68  AE---------YRMWLVELLPHDAVSDLAGLESRVATSPIVQGEVISAQRFV-ADDEALG 117

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
           + +P+G  A ++     + VGG I+    VDV +         T T +L++  ++     
Sbjct: 118 TPVPEGLCAVSVPAEDVATVGGSIRAGSRVDVYV------SSGTTTDLLAHDVLVLFTSA 171

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
             +D    + S ATL + P   + L++A     L   L S
Sbjct: 172 SSADGSEAI-SWATLAVEPEMVQELISAAERTSLYFSLPS 210


>gi|73539230|ref|YP_299597.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
 gi|72122567|gb|AAZ64753.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
          Length = 318

 Score = 35.8 bits (81), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSER--KPTVTVVLSNIRV 176
           GL++ +P+G+RA  + +     VG  ++P D+VDV +V R  S+        ++L  +RV
Sbjct: 107 GLAAQIPEGERAVAIAVDEVIGVGNQVQPGDYVDVFLVLRRDSQEIGASQARMLLPRLRV 166

Query: 177 IAI------DHNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +A       +      E+++       TA L +   Q   L  AQ   +L + LR+  D
Sbjct: 167 LAYGSGAVNEPQKQQPEQMMTRREGAKTAVLSVPLEQVSKLAMAQHSGRLLMALRNPHD 225


>gi|189465679|ref|ZP_03014464.1| hypothetical protein BACINT_02039 [Bacteroides intestinalis DSM
           17393]
 gi|189433943|gb|EDV02928.1| hypothetical protein BACINT_02039 [Bacteroides intestinalis DSM
           17393]
          Length = 382

 Score = 35.4 bits (80), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQA--KALVAAQSVAKLSLVLRS-----IAD 225
           ++R +A + + D D  V+V  T  +ELT  +      + A  V +L LV+R+     + D
Sbjct: 225 SVRAVAGNTSADLDLEVVVTGTYQMELTTPRGLLSTEITAGDVKRLELVVRNTGSSLLKD 284

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKAG 252
           +  SS + +D W+V  E  +I+++KAG
Sbjct: 285 IQLSSGKPTD-WEVSFEPAKIEMLKAG 310


>gi|326390773|ref|ZP_08212326.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993167|gb|EGD51606.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 212

 Score = 35.4 bits (80), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---------- 179
           R  T+ ++++S++ G IKP D VD+  V     +     +V   +++  +          
Sbjct: 110 RRVTIGVNLTSSLAGKIKPGDFVDIGWVPKDEAKDGASKIVAEKVQIYDVVNKSGEDVRK 169

Query: 180 -DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            D N   D+  L+ +  TL +TP Q  A++  +  AK SL L
Sbjct: 170 ADKNNQYDKESLIPAAVTLIVTPEQ--AVIIKEYEAKGSLFL 209


>gi|167562916|ref|ZP_02355832.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis
           EO147]
          Length = 226

 Score = 35.4 bits (80), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 14/117 (11%)

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPT--------VTVV 170
           GL+  +  G+RA  + +  ++AVG  ++P + VDV M ++  S    T          ++
Sbjct: 109 GLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFMNMKRESSFGTTGSEISQSQARLL 168

Query: 171 LSNIRVIAI-DHNIDSDER---VLVGS-TATLELTPMQAKALVAAQSVAKLSLVLRS 222
           LS +RV++  D   D D        G+ TA L +   Q  AL  A++  +L L LRS
Sbjct: 169 LSRVRVLSFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRS 225


>gi|116694139|ref|YP_728350.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
 gi|113528638|emb|CAJ94985.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
          Length = 317

 Score = 35.4 bits (80), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKP--TVTVVLSNIR 175
            GL++ + +G+RA  + +     VG  ++P D+VDV +V R   +  P     ++LS +R
Sbjct: 106 AGLATQVREGERAVAVSVDEVIGVGNQVQPGDYVDVFLVLRRDQQEIPESQARMLLSRLR 165

Query: 176 VIAI-------DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V+A          N   ++   R     TA L +   Q   L  AQ   +L L LR+  D
Sbjct: 166 VLAYGVASVNRPQNAKPEQMMARQEGAKTAVLSVPLEQVSRLAMAQQSGRLLLALRNPQD 225


>gi|29345660|ref|NP_809163.1| dihydroorotase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253567647|ref|ZP_04845058.1| dihydroorotase [Bacteroides sp. 1_1_6]
 gi|29337552|gb|AAO75357.1| dihydroorotase (DHOase) [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841720|gb|EES69800.1| dihydroorotase [Bacteroides sp. 1_1_6]
          Length = 445

 Score = 35.0 bits (79), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 73  EENVFDGFIDDV---HQPNAMQELDGVLVRV----PILKGDPIRLEKLVDRGNGGLSSLL 125
           +E V  G ID +   H P+++ E +G  ++V    P ++   + + +L D+G   +  ++
Sbjct: 297 QEAVNSGLIDAIATDHAPHSLSEKEGGALKVMSGMPTIQFSLVSMLELADKGAFSIEKVV 356

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
            K   A      I +   G I+     D+V+VR  SE   T   +LS  +
Sbjct: 357 EKMSHAPAQMYEIRNR--GFIRKGYQADLVLVRPDSEWTVTTDCILSKCK 404


>gi|115351455|ref|YP_773294.1| CpaB family Flp pilus assembly protein [Burkholderia ambifaria
           AMMD]
 gi|115281443|gb|ABI86960.1| Flp pilus assembly protein CpaB family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score = 35.0 bits (79), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 30/148 (20%)

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPT-VTV 169
           GL+  +  G+RA  + +  S+AVG  ++P + VDV +          +  SE   T   +
Sbjct: 109 GLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARL 168

Query: 170 VLSNIRVIAI-DHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +LS +RV++  D   D D     G    TA L +   Q  AL  A++  +L+L LR+  D
Sbjct: 169 LLSRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRD 228

Query: 226 L----------------NPSSSEDSDVW 237
                             PS+   S VW
Sbjct: 229 TEIATQTVAVRTGGGGATPSAQAASGVW 256


Searching..................................................done


Results from round 2




>gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040405|gb|ACT57201.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 263

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV
Sbjct: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG
Sbjct: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID
Sbjct: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
           HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ
Sbjct: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240

Query: 241 EEGKEIQIIKAGVIVNKDGEGIS 263
           EEGKEIQIIKAGVIVNKDGEGIS
Sbjct: 241 EEGKEIQIIKAGVIVNKDGEGIS 263


>gi|315121892|ref|YP_004062381.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495294|gb|ADR51893.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 267

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 164/266 (61%), Positives = 213/266 (80%), Gaps = 3/266 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK TRLMG+VVSG+FAL+AGIIAMRLVS HH+Q EE++ +   +  NVL++K +L VGMV
Sbjct: 1   MKFTRLMGLVVSGLFALLAGIIAMRLVSHHHLQKEEIVAQPSIRLSNVLMAKSNLKVGMV 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +TP++LEWVAFP ENV  GF+DDV +PNA++EL G +VR+PILKGDPIR EKLVD G  G
Sbjct: 61  ITPDVLEWVAFPAENVVVGFVDDVSRPNAIEELKGSIVRIPILKGDPIRFEKLVDHGQHG 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLL KGKRA  +DIS+S+AVGG++KPNDHVDV+MVR + ERK    VVLSN+RV+AID
Sbjct: 121 VSSLLSKGKRAVALDISVSNAVGGLVKPNDHVDVLMVRLIGERKTKTDVVLSNVRVLAID 180

Query: 181 HNIDSDERV--LVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVW 237
             +D++     L+G+TATLELTPMQAK L+AAQ +A KL+LVLRSI+D + +  E +D  
Sbjct: 181 QTLDAEGEPNGLIGNTATLELTPMQAKTLLAAQQIASKLTLVLRSISDFHSTDLEIADFN 240

Query: 238 DVQEEGKEIQIIKAGVIVNKDGEGIS 263
             ++ G+ IQ+IK+G+I NKDGE +S
Sbjct: 241 LGEDGGRGIQVIKSGIISNKDGEEMS 266


>gi|227823970|ref|YP_002827943.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234]
 gi|227342972|gb|ACP27190.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234]
          Length = 271

 Score =  249 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 104/264 (39%), Positives = 165/264 (62%), Gaps = 7/264 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++ + V+   A +AG++AM+L  SP     E ++ + P+  INVL++   L VG 
Sbjct: 1   MKPVRIIILAVAVGSAAMAGLLAMKLTRSPAQRMAEPLVEQAPS--INVLVASKSLPVGS 58

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +  + + W+A+P++ V +G I + ++P A+ +L G +VR+P+  G+P+R EK+ D  N 
Sbjct: 59  RLGADSIHWLAWPKDGVAEGMITEENRPAAIDDLAGAVVRLPLFDGEPVRQEKIADPSNR 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            +SSLLP GKRA   +I++++  GG I PND VDV+MVR           VLSN+RV+AI
Sbjct: 119 IMSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDVYLTETVLSNVRVLAI 178

Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  ++  +   + ++G+TATLELTP Q+K +  AQ +A ++SL LRS+AD   + +E +D
Sbjct: 179 DQQVEEKDDGSKSVIGTTATLELTPDQSKVMTVAQQMAERISLALRSVADAQEADTEAAD 238

Query: 236 VWDVQEEGKEIQIIKAGVIVNKDG 259
                +    IQ+IK+G IV  DG
Sbjct: 239 YLLSGDGQPSIQVIKSGSIVKNDG 262


>gi|15963893|ref|NP_384246.1| putative pilus assembly signal peptide protein [Sinorhizobium
           meliloti 1021]
 gi|307315790|ref|ZP_07595304.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
 gi|307320425|ref|ZP_07599842.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|15073068|emb|CAC41527.1| Putative pilus assembly signal peptide protein [Sinorhizobium
           meliloti 1021]
 gi|306893991|gb|EFN24760.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|306898558|gb|EFN29231.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
          Length = 269

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 5/263 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+  R++ + V+   A +AG++AM+L      QT E + E  A  INVL++   L VG  
Sbjct: 1   MRPVRIIILAVAIGSAAMAGLLAMKLTRAPAPQTAEPVIEQ-APTINVLVAGKSLPVGSR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W A+P++ V +G I + ++P A+++L G +VR+PI  G+P+R EK+ D  N  
Sbjct: 60  LGADSIHWKAWPKDGVAEGMITEENRPAAVEDLAGAVVRLPIFTGEPVRQEKIADASNRI 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +I++++  GG I PND VDV+MVR           VLSN+RV+AID
Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I+  E   + +VG+TATLELTP Q+K +  AQ +A ++SL LRS+AD     +  +D 
Sbjct: 180 QQIEEKEDGSKAVVGTTATLELTPDQSKVMTVAQQMADRISLALRSVADAQEPDTTAADY 239

Query: 237 WDVQEEGKEIQIIKAGVIVNKDG 259
               +    IQ+IK+G IV  DG
Sbjct: 240 LLNGDGRPSIQVIKSGSIVKGDG 262


>gi|150398540|ref|YP_001329007.1| SAF domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150030055|gb|ABR62172.1| SAF domain protein [Sinorhizobium medicae WSM419]
          Length = 269

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 104/263 (39%), Positives = 158/263 (60%), Gaps = 5/263 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ + V+   A +AG++AM+L      +  E + E  A  INVL++   L VG  
Sbjct: 1   MKPVRIIILAVAVGSAAMAGLLAMKLTRAPAARMAEPVIEQ-APTINVLVAGKSLPVGSR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W A+P++ + +G I +  +P+A+ +L G +VR+PI  G+P+R EK+ D  N  
Sbjct: 60  LGADSIHWKAWPKDGIAEGMITEETRPSAVDDLAGAVVRLPIFTGEPVRQEKIADASNRI 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +I++++  GG I PND VDV+MVR           VLSN+RV+AID
Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I+  E   + +VG+TATLELTP Q+K +   Q +A ++SL LRS+AD     +  +D 
Sbjct: 180 QQIEEKEDGTKAVVGTTATLELTPDQSKVMTVTQQMADRISLALRSVADAQEPDTTAADH 239

Query: 237 WDVQEEGKEIQIIKAGVIVNKDG 259
               +    IQ+IK+G IV  DG
Sbjct: 240 LLNGDGQPSIQVIKSGSIVKGDG 262


>gi|239833238|ref|ZP_04681567.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301]
 gi|239825505|gb|EEQ97073.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301]
          Length = 279

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 95/266 (35%), Positives = 142/266 (53%), Gaps = 12/266 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ + A  AG IAM L +P              K  +VL++  +L VG  
Sbjct: 9   MKSARLLILGVAVLAAGGAGYIAMNLATPPPAPVVAAPEAPQIKLEDVLVATENLGVGAE 68

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + + W  +P E + +G+I    +P+A+ +L G  VR+    G+PIR  KL+  G   
Sbjct: 69  LT-SQMRWQPWPAEAISEGYITRASEPDAINQLSGATVRLQFFTGEPIRKAKLIGPGQSF 127

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNI 174
           +SS+LP G RA    I+  S+ GG I PND VDV+M R   +         T   VL N+
Sbjct: 128 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTRRKPDNGDKSLTPFTTETVLQNV 187

Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230
           RV+AID  I  DE   +V+VG TATLE+TP QA+ +  AQ +A +L+L LRS  D+    
Sbjct: 188 RVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDVEDRD 247

Query: 231 SEDSDVWDVQE-EGKEIQIIKAGVIV 255
            + +D           +++IK+G + 
Sbjct: 248 IKQADYLVSSPTRSGTVKVIKSGSVT 273


>gi|153008058|ref|YP_001369273.1| SAF domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559946|gb|ABS13444.1| SAF domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 271

 Score =  241 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 97/266 (36%), Positives = 142/266 (53%), Gaps = 12/266 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ + A  AG IAM L +P              K  +VL++  +L VG  
Sbjct: 1   MKSARLLILGVAVLAAGGAGYIAMNLAAPPPAPVVVAPETPQMKLEDVLVATENLGVGAE 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + + W  +P E V DG+I    +P+A+ +L G  VR+    G+PIR  KL+  G   
Sbjct: 61  LT-SQMRWQPWPAEAVSDGYITRASEPDAINQLSGATVRLQFFTGEPIRKTKLIGPGQSF 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNI 174
           +SS+LP G RA    I+  S+ GG I PND VDV+M R   +         T   VL N+
Sbjct: 120 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTRRKPDNGDKSLTPFTTETVLQNV 179

Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230
           RV+AID  I  DE   +V+VG TATLE+TP QA+ +  AQ +A +L+L LRS  D+    
Sbjct: 180 RVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDVEDKD 239

Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIV 255
            + +D           +++IK+G + 
Sbjct: 240 IKQADYLVSSPTRSGTVKVIKSGSVT 265


>gi|325291660|ref|YP_004277524.1| components of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059513|gb|ADY63204.1| components of type IV pilus [Agrobacterium sp. H13-3]
          Length = 268

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/268 (41%), Positives = 159/268 (59%), Gaps = 6/268 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R++ + V+ V A +AGI+AM++     V  +          +NVL+S  +L VG  
Sbjct: 1   MKPSRIVILSVALVAAGLAGIVAMQISGAKQVIEKAETIIEKEPTVNVLVSSVNLPVGSR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W  +P  NV D FI +   PNA+ EL G +VR+P+ +G+P+R EK+VD     
Sbjct: 61  LNDSSVHWTPWPTGNVIDSFITEAKNPNAITELSGAVVRLPLFQGEPVRPEKVVDSSTRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +IS+S+  GG + PND VDV+MVR           VL+N+RV+AID
Sbjct: 121 MSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGDSGHFLTENVLNNVRVLAID 180

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I   E     +VG+TATLELTP QAK +  AQ +A +L+L LRS+AD   + +  +  
Sbjct: 181 QQIKEGEDGTSAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSAGY 240

Query: 237 WDVQEEG-KEIQIIKAGVIVNKDGEGIS 263
                 G  EIQ+IK+G IV K G+G S
Sbjct: 241 LLNGGSGQPEIQVIKSGSIV-KAGQGAS 267


>gi|15887574|ref|NP_353255.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155111|gb|AAK86040.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 268

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/268 (41%), Positives = 160/268 (59%), Gaps = 6/268 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R++ + V+ V A +AG++AM++     V  +          +NVLIS  +L VG  
Sbjct: 1   MKPSRIVILSVALVAAGLAGLVAMQISGAKQVIEKAETIIQKEPTVNVLISSVNLPVGSR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W  +P+ NV D FI    +P+A+ EL G +VR+P+ +G+PIR EK+VD     
Sbjct: 61  LNDSSMRWTPWPQGNVVDSFITQAKRPDAITELAGTVVRLPLFEGEPIRPEKVVDSSTRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +IS+S+  GG + PND VDV+MVR           VL+N+RV+AID
Sbjct: 121 MSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGENGNFLTENVLNNVRVLAID 180

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I   E     +VG+TATLELTP QAK +  AQ +A +L+L LRS+AD   + +  +  
Sbjct: 181 QQIKEGEDGIAAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSAGH 240

Query: 237 WDVQEEG-KEIQIIKAGVIVNKDGEGIS 263
                 G  EIQ+IK+G IV K G+G S
Sbjct: 241 LLSGSSGQPEIQVIKSGSIV-KSGQGAS 267


>gi|92116014|ref|YP_575743.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14]
 gi|91798908|gb|ABE61283.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14]
          Length = 260

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/262 (34%), Positives = 139/262 (53%), Gaps = 19/262 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R+    V    A+ AG +A  L S    + +   T    + ++VL++K D+ +G  
Sbjct: 1   MNTARI----VVLTIAVGAGGLAAYLASGSDKKPQPAQTAQ-LQTVDVLVAKSDIPLGQA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           VT N + W A+P  +    FI    +P+A  +L G + R P + G+PIR  KLV  +G+G
Sbjct: 56  VTANDVAWQAWPANSASSSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSG 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSN 173
            ++++LP G RA + +IS  +  GG I PND VDV++ +                 +LSN
Sbjct: 116 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSQRDKNPDHPNANSVNSETILSN 175

Query: 174 IRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +RV+A+D  I+    ++V+VG TATLEL P QA+ L  ++ +  LSL LRS+AD N   S
Sbjct: 176 VRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEMLARSRQMGTLSLALRSLADANAPES 235

Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253
              D     +    I I++ GV
Sbjct: 236 STDD-----QRRDSINIVRYGV 252


>gi|75674500|ref|YP_316921.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255]
 gi|74419370|gb|ABA03569.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255]
          Length = 275

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 93/262 (35%), Positives = 146/262 (55%), Gaps = 19/262 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R+    V    A+ AG +A  L S    +T+ V TE   + ++VL++K D+ +G  
Sbjct: 16  MNTARI----VVLTIAVGAGGLAAYLASGSDKETQPVQTEQ-LRTVDVLVAKSDIPLGQA 70

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           VT N + W  +P ++    FI    +P+A  +L G + R P + G+PIR  KLV  +G+G
Sbjct: 71  VTANDVAWQTWPADSASHSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSG 130

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSN 173
            ++++LP G RA + +IS  +  GG I PND VDV++ +        S        VL N
Sbjct: 131 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSKREKNADHASGDSVNSETVLGN 190

Query: 174 IRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +RV+AID  I+    ++V+VG TATLEL P QA+ L  ++ +  LSL LRS+AD N   +
Sbjct: 191 VRVLAIDQTIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADAN---A 247

Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253
            + D+ D + +   I +++ GV
Sbjct: 248 PEGDINDRRRD--SINVVRYGV 267


>gi|316933040|ref|YP_004108022.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1]
 gi|315600754|gb|ADU43289.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1]
          Length = 266

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 139/266 (52%), Gaps = 19/266 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGM 59
           M   R+    V    A+ AG +A  L S    Q +         + + VL++K D+ +G 
Sbjct: 7   MNTARI----VVLTIAVGAGGVAAYLASTAGPQPQAPAEPVARMQTVEVLVAKNDIPLGQ 62

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGN 118
            V P  L+W  +P       FI    QPNA  +L G + R P + G+PIR +KLV   G+
Sbjct: 63  AVAPGDLQWQTWPSATASSHFIRRNDQPNATTDLAGSIARSPFIAGEPIREQKLVKANGS 122

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLS 172
           G ++++LP G RA + +IS  +  GG I PND VDV++ +        S  +    ++LS
Sbjct: 123 GFMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKREKNSDRPSGEQIVSEIILS 182

Query: 173 NIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+RV+A+D  I+    ++V+VG TATLEL P QA+ L  A+    L+L LRS+AD    S
Sbjct: 183 NVRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEYLARARQSGTLALALRSLADAGQPS 242

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVN 256
           + ++D      +   + I++ GV   
Sbjct: 243 TTENDA-----KRDSVNIVRYGVTTQ 263


>gi|222084468|ref|YP_002542997.1| pilus assembly protein [Agrobacterium radiobacter K84]
 gi|221721916|gb|ACM25072.1| pilus assembly protein [Agrobacterium radiobacter K84]
          Length = 270

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 102/262 (38%), Positives = 158/262 (60%), Gaps = 5/262 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R+M + V+ V A +AG++AM L    ++  +          +NVL++  +L VG  
Sbjct: 1   MKPARIMILAVAVVTAGLAGLLAMHLAGSRNIVQQVETVVEKEATVNVLVADANLPVGSR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I    +P+A+++L+G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LNEKSIHWMAWPQSGVVKGLITQAERPDALKDLNGAVVRLPIFEGEPIREEKVADASSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR    +K     VLSN+R++A+D
Sbjct: 121 LSSLLPSGKRAVATEISVATGAGGFILPNDRVDVIMVRKGDTQKFVTETVLSNVRILAVD 180

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I+  +   + +VG+TATLELTP Q K L  AQ +A +L+L LRS+AD     +  +D 
Sbjct: 181 QQIEEKQDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLTLALRSVADAQQPDTTAADY 240

Query: 237 WDVQEE-GKEIQIIKAGVIVNK 257
               +  G  +Q+IK+G I+  
Sbjct: 241 LLSGDNGGAVVQVIKSGAIIAN 262


>gi|85713504|ref|ZP_01044494.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A]
 gi|85699408|gb|EAQ37275.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A]
          Length = 260

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 139/262 (53%), Gaps = 19/262 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R+    V    A+ AG +A  L S    +  ++        ++VL++K D+ +G  
Sbjct: 1   MNTARI----VVLTIAVGAGGLAAYLASGSD-KKPQIAQTVQLPTVDVLVAKSDIQLGQT 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           VT N + W  +P ++  + FI    +P+A  +L G + R P + G+PIR  KLV  +G+G
Sbjct: 56  VTANDVAWQTWPADSASNSFIRRDRRPDATTQLAGSIARSPFIAGEPIREPKLVSAKGSG 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSN 173
            ++++LP G RA + +IS  +  GG I PND VDV++ R        S        +LSN
Sbjct: 116 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSRRDRNADHPSGDSVNSETILSN 175

Query: 174 IRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +RV+A+D  I+    ++V+VG TATLEL P QA+ L  ++ +  LSL LRS+AD N   S
Sbjct: 176 VRVLAVDQTIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADANAPES 235

Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253
              D          I +++ GV
Sbjct: 236 NIDD-----RRRDSISVVRYGV 252


>gi|222147183|ref|YP_002548140.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734173|gb|ACM35136.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 269

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 110/267 (41%), Positives = 163/267 (61%), Gaps = 10/267 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV---QTEEVITENPAKFINVLISKGDLAV 57
           MK  R++ + V+   A +AG++AM L     V   Q+E V+T+ P     VLI+   L V
Sbjct: 1   MKPARILILFVAVAAAGLAGLLAMGLSGQKRVVVQQSEPVVTKEP--TTKVLIAAASLPV 58

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  +T   + W+ +P+ ++ DGF+ + ++P A+ +L G++VR+PI +G+PIR+EK+ D  
Sbjct: 59  GARLTDKAMRWMDWPKTDLVDGFVTEENRPQALSDLAGLVVRLPIFEGEPIRIEKIADAS 118

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           +  LS+LLP GKRA + +IS+++  GG I PND VDV+MVR           VLSN+RV+
Sbjct: 119 SRTLSALLPAGKRAISTEISVATGAGGFILPNDRVDVIMVRKGDNDNHLTETVLSNVRVL 178

Query: 178 AIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS-SE 232
           AID  I+      R ++G+TATLELTP Q K L  AQ +A +LSL LRS+AD      S 
Sbjct: 179 AIDQQIEEKNDGTRSVIGTTATLELTPEQTKVLTVAQQMAERLSLALRSVADAQEQDNSS 238

Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDG 259
            S +      G ++Q+IK+G IV   G
Sbjct: 239 ASYLLSGDSGGPQVQVIKSGQIVKSAG 265


>gi|90425196|ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18]
 gi|90107210|gb|ABD89247.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18]
          Length = 265

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 16/266 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R+    V    A+ AG +A  L S    Q            ++VL++K D+ +G  
Sbjct: 1   MNTARI----VVLTIAVGAGGVAAYLASGADQQPPPAAPVAQLPTVDVLVAKSDIPLGQA 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           +TP  ++W  +P     + FI    +P+A  ++ G + R   + G+PIR  KLV   G+G
Sbjct: 57  LTPGDVQWQVWPAATASEMFIRRNVRPDATTQIVGSIARSAFIAGEPIRDLKLVKANGSG 116

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------SERKPTVTVVLS 172
            ++++LP G RA + +IS  +  GG I PND VDV++ +         S       ++LS
Sbjct: 117 FMAAILPSGMRAVSTEISPETGAGGFILPNDRVDVILSKREKNPDARASGDGVNSEIILS 176

Query: 173 NIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           NIRV+AID  I+    ++V+VG TATLEL P Q++ L  A+    LSL LRS+AD N + 
Sbjct: 177 NIRVLAIDQTIEEKNGQKVVVGKTATLELKPEQSEGLARARQSGTLSLALRSLADANSAV 236

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVN 256
           ++  D  D   +   I +++ GV   
Sbjct: 237 ADTPD--DRSAKRDSINVVRFGVSTP 260


>gi|299132282|ref|ZP_07025477.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2]
 gi|298592419|gb|EFI52619.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2]
          Length = 273

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 143/262 (54%), Gaps = 19/262 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVG 58
           M   R++ + +    A+ AG +A  L S    +    +     +    +VL++K D+ +G
Sbjct: 1   MNTARVVVLAI----AVSAGGVAAFLASGSDQKPAPRVAAPVPQLETTDVLVAKSDIPLG 56

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRG 117
             +T + ++W ++P       F+    + +A++++ G +VR P L G+PIR  KLV   G
Sbjct: 57  QTITADDMKWQSWPAATASSSFVKKSERADAIKDMTGSIVRSPFLAGEPIRETKLVKANG 116

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLS 172
           +G ++++LP G RA + +IS  +  GG I PNDHVDV++ R    R+         ++LS
Sbjct: 117 SGFMAAILPSGMRAISTEISPETGAGGFILPNDHVDVLLSRRQKSREGNGESVSSEIILS 176

Query: 173 NIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           ++RV+AID  ++    ++V+VG TATLEL P QA+ L  ++    LSL LRS+ D N   
Sbjct: 177 DVRVLAIDQTVEEKNGQKVVVGKTATLELKPAQAETLARSRQSGTLSLALRSLVDAN--- 233

Query: 231 SEDSDVWDVQEEGKEIQIIKAG 252
            +   V D  +E K I + + G
Sbjct: 234 -KPGKVEDASDE-KLITVYRGG 253


>gi|115526291|ref|YP_783202.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisA53]
 gi|115520238|gb|ABJ08222.1| putative pilus assembly protein cpaB [Rhodopseudomonas palustris
           BisA53]
          Length = 268

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 10/255 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++      A  +A    SP        +     K ++VL++K +LA+G +
Sbjct: 1   MNKARIVVLAIAVSAGGAAAYLASGADSPKPPPQVAQVPTAQLKTVDVLVAKTNLALGQL 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           V P+ ++W  +P ++    FI     PN    + G + R P + G+PIR  KLV   G+G
Sbjct: 61  VGPSDVQWQNWPADSANSNFIRRDQHPNFDTTVAGSIARSPFVAGEPIREVKLVRPNGSG 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------SERKPTVTVVLS 172
            ++++LP G RA + +IS  +  GG I PND VDV++ +         S+   T   +L+
Sbjct: 121 FMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKRERNSDSESSKENVTSVTILT 180

Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+RV+AID        + V VG TATLEL P QA+ L  A+    LSL LRS+ D N  +
Sbjct: 181 NVRVLAIDQLPKEREGQNVAVGKTATLELLPEQAEQLARARQSGTLSLALRSMVDSNVVA 240

Query: 231 SEDSDVWDVQEEGKE 245
           +   D      +G E
Sbjct: 241 TVTDDKQVTIYKGSE 255


>gi|27375778|ref|NP_767307.1| CtpC protein [Bradyrhizobium japonicum USDA 110]
 gi|27348916|dbj|BAC45932.1| CtpC protein [Bradyrhizobium japonicum USDA 110]
          Length = 270

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 90/271 (33%), Positives = 137/271 (50%), Gaps = 20/271 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGM 59
           M   R+    V  V AL AG +A  L S +  +    +        + VL++K D+ +G 
Sbjct: 1   MNTARI----VVLVIALGAGGVAAYLASGYDNKPAPALPVAEKLPTVEVLVAKNDIQLGQ 56

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGN 118
            V P  L+W ++P       FI    +P A  ++ G + RVP+++G+PIR +KLV   G+
Sbjct: 57  AVKPEDLQWQSWPAATASGAFIRRDSRPEAQTQIAGSIARVPLMQGEPIREQKLVRAEGS 116

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------VT 168
           G ++++LP G RA + D++  ++ GG I PND VD+V+ R L                  
Sbjct: 117 GFMAAILPSGMRAVSTDVTAETSAGGFILPNDRVDIVLTRRLKNPDVNGPTAGNDLILSE 176

Query: 169 VVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           V+L+NIRV+AID        +  +VG T TLEL P Q   L AA+    L L LRSI D 
Sbjct: 177 VILTNIRVLAIDQAPKEKDGQNAVVGKTVTLELKPDQVATLTAARQGGTLQLALRSIVDA 236

Query: 227 NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           N +     D+   +  G  + +I+ GV V +
Sbjct: 237 NATELTAEDLAIKRSGG--VNVIRYGVQVRQ 265


>gi|148256956|ref|YP_001241541.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1]
 gi|146409129|gb|ABQ37635.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. BTAi1]
          Length = 266

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 133/257 (51%), Gaps = 13/257 (5%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGMVVTPNILEW 68
           +V    AL AG +A  LVS    Q    +        + VL++K D+ +G  + P  L W
Sbjct: 6   IVVLTIALGAGGVAAYLVSTSESQQPVAVAPVAQLPTVEVLVAKNDIGLGQAIKPGDLVW 65

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPK 127
             +P E   + FI    +P A  +L G + R P + G+PIR +KLV   G+G ++++LP 
Sbjct: 66  QTWP-EAASNIFIRRGDRPEAANQLVGTIARAPFVIGEPIREQKLVKSDGSGFMAAILPA 124

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAID 180
           G RA + +IS  +  GG I PND VDV++ +              +  ++LSN+RV+AID
Sbjct: 125 GMRAISTEISPETGAGGFILPNDRVDVILSKRDKNPDKPGGPDYVSSEIILSNVRVLAID 184

Query: 181 HNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
                 E    +VG T TLEL P QA+ L  A+    L+L LRSIAD+N +    ++   
Sbjct: 185 QAPKEKEGQNTVVGKTVTLELKPEQAETLARARQSGSLALALRSIADVNAADGNKNET-Q 243

Query: 239 VQEEGKEIQIIKAGVIV 255
           +   G  I+II+ G+  
Sbjct: 244 MARRGNAIEIIRYGITS 260


>gi|328545280|ref|YP_004305389.1| Flp pilus assembly CpaB [polymorphum gilvum SL003B-26A1]
 gi|326415022|gb|ADZ72085.1| Flp pilus assembly CpaB [Polymorphum gilvum SL003B-26A1]
          Length = 258

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 135/263 (51%), Gaps = 12/263 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RLM + V+    L+A  + M   +P   QT E + E   + + VL++  D+ +G  
Sbjct: 1   MKYARLMILGVAMGAGLLAARMVMTTKAPEVPQTVERV-EPEKQTVAVLVATRDIRLGDH 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W  +PE  V  G I   +QP+A + + G + + PI  G+PIR ++L+    G 
Sbjct: 60  LAASDISWAEWPENVVPQGAITRQNQPDAEELMVGQIAKAPIYSGEPIRGQRLIRTDRGF 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRVIA 178
           ++++LPKGKRA  + +   +  GG I P D VDV++ RS    +       +L N+RV+A
Sbjct: 120 MAAILPKGKRAIAVGVEAETTAGGFILPGDKVDVILTRSSDSNRSNARSETILENVRVLA 179

Query: 179 IDHNI--DSDERVL-VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           ID     + DE+ L    TATLEL+  QA+ +  AQ +  +SL LRS  D     S D  
Sbjct: 180 IDTTTAGEQDEKSLSPDRTATLELSLEQAEVVAQAQQIGTISLALRSAQD-----SGDEM 234

Query: 236 VWDVQEEGKEIQIIKAGVIVNKD 258
              +  +G  +  +K GV     
Sbjct: 235 DGPISRKG-GVSFVKYGVSSQGS 256


>gi|170740622|ref|YP_001769277.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46]
 gi|168194896|gb|ACA16843.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46]
          Length = 268

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/268 (34%), Positives = 135/268 (50%), Gaps = 16/268 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ +R + I V+ V  L A  +      P       V        ++VL++  DL +G  
Sbjct: 1   MRSSRALLIGVAAVTGLAAFYMMSGSPPPPPPPPVVVQAPAVPDTVDVLVAAADLPMGQT 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           + P  L W A+P+ +V DGFI     P A+++  G  VR P L G+PIR EKL+   G+G
Sbjct: 61  LKPADLRWQAWPKGSVNDGFIQRGQNPRALEDTVGSFVRGPFLGGEPIRREKLIRANGSG 120

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVV 170
            LS++LP G RA  + I    S+  GG I PND VDV+      E              +
Sbjct: 121 FLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTYRDDEASRATTSDVQVSETI 180

Query: 171 LSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           L N+RV+A+   +     ERV+ G TATLELTP Q + +  AQ V +LSL LRSIAD   
Sbjct: 181 LQNVRVLAVGQTVQERNGERVVTGDTATLELTPAQTEQITLAQKVGQLSLALRSIADAGI 240

Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
           S  E+ +     ++   + +++ GV   
Sbjct: 241 SQPENPE----PQKESALTVVRYGVSRQ 264


>gi|209551758|ref|YP_002283675.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537514|gb|ACI57449.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 271

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 109/264 (41%), Positives = 158/264 (59%), Gaps = 6/264 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG +AM++     V T+          +N+L+S  +LAVG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGFLAMQMAGNGGVVTQVQSVIEKEPTVNILVSSANLAVGER 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+ +P+  V  G I +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LDDKSVHWMPWPQGGVVPGLITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSNSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   +   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKD 258
                + G   IQ+IK+G IV   
Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDA 264


>gi|86748908|ref|YP_485404.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2]
 gi|86571936|gb|ABD06493.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2]
          Length = 265

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 137/266 (51%), Gaps = 16/266 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ +V++     VA  +A  +           + +     + VL++K D+ +G  
Sbjct: 1   MNTARIVVLVIAVGAGAVAAYLASGIGGQETAGPTAPVAQ--LATVEVLVAKSDIPLGQP 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119
           V P+ ++W  +P       FI    +P+A  +L G + R P + G+PIR +KLV   G+G
Sbjct: 59  VGPSDVQWQTWPAATASSNFILRSERPDASVQLAGSIARSPFIAGEPIREQKLVKSNGSG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-------VTVVLS 172
            ++++LP G RA + +IS  +  GG I PND VDV++ +                 ++LS
Sbjct: 119 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSKRDQNPDRVKGGDVVNSEIILS 178

Query: 173 NIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           NIR++AID  ++    ++V+VG TATLEL P QA+ L  A+    LSL LRS+AD N   
Sbjct: 179 NIRILAIDQTVEEKNGQKVVVGKTATLELKPDQAEFLARARQSGTLSLALRSLADAN--- 235

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVN 256
              +   ++  +   I +I+ GV   
Sbjct: 236 -APARTEEIGGKRDSINVIRFGVSTQ 260


>gi|146342077|ref|YP_001207125.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278]
 gi|146194883|emb|CAL78908.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. ORS278]
          Length = 269

 Score =  222 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 90/259 (34%), Positives = 133/259 (51%), Gaps = 14/259 (5%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGMVVTPNILEW 68
           +V    AL AG +A  LVS    Q    +        + VL++K D+ +G  + P  L W
Sbjct: 6   IVVLTIALGAGGVAAYLVSSSESQQPAPVAPVAQLPTVEVLVAKADIGLGQAIKPGDLIW 65

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPK 127
             +PE    + FI    +P A  +L G + R P + G+PIR +KLV   G+G ++++LP 
Sbjct: 66  QTWPE-AASNIFIRRGDRPEAATQLVGSIARAPFVIGEPIREQKLVKSDGSGFMAAILPA 124

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAID 180
           G RA + +IS  +  GG I PND VDV++ R                 ++LSN+RV+AID
Sbjct: 125 GMRAISTEISPETGAGGFILPNDRVDVILSRREKNPDKPAAADSIVSEIILSNVRVLAID 184

Query: 181 HNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS--EDSDV 236
                 E    +VG T TLEL P QA+ L  A+    L+L LRSIAD+N   +   +++ 
Sbjct: 185 QAPKEKEGQNTVVGKTVTLELKPEQAETLSRARQAGTLALALRSIADINAPDTGKTETEQ 244

Query: 237 WDVQEEGKEIQIIKAGVIV 255
             +   G  I+II+ GV  
Sbjct: 245 QQMARRGNAIEIIRYGVTS 263


>gi|110636320|ref|YP_676528.1| pilus assembly protein cpaB [Mesorhizobium sp. BNC1]
 gi|110287304|gb|ABG65363.1| pilus assembly protein cpaB [Chelativorans sp. BNC1]
          Length = 270

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 96/265 (36%), Positives = 145/265 (54%), Gaps = 11/265 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGM 59
           M  +R++ + V+   A+ AG +A  L SP  V       E P     +VL+   D+ VG 
Sbjct: 1   MNKSRIVILGVAVAAAIGAGYLAKNLASPQKVAAVAPTPEKPPVSLTDVLVLTQDVPVGE 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +    + W A+P E+V D FI    +P+A++ +   + R+P+  G+P+R  KLV  G+ 
Sbjct: 61  PINGAAM-WQAWPAESVMDAFITREREPDALETIRNAVARLPLFAGEPVRRSKLVGEGDS 119

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIR 175
            L+++LP GKRA    I+  ++ GG I PND VDV+M R   E           VL NIR
Sbjct: 120 FLAAILPPGKRAVATRIAADTSAGGFILPNDRVDVIMTRRADEGSSPNGFITETVLENIR 179

Query: 176 VIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231
           V+AID  I  DE   RV +G TATLELTP +A+ +  AQ +A +L+L LRS+AD N  ++
Sbjct: 180 VLAIDQTIHEDEEGRRVKLGETATLELTPEEAEVITVAQQLADRLTLSLRSVADSNEEAT 239

Query: 232 EDSD-VWDVQEEGKEIQIIKAGVIV 255
           +    +      G  +++IK+G   
Sbjct: 240 DRGLHLVTGTGRGDSVRLIKSGETS 264


>gi|304392385|ref|ZP_07374326.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130]
 gi|303295489|gb|EFL89848.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130]
          Length = 286

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 12/264 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH---VQTEEVITENPAKFINVLISKGDLAV 57
           MK  +L+ I V+ V +L AG + M +  P     VQT+            VL++  D+  
Sbjct: 14  MKPVQLVLIAVALVASLGAGYLVMNMSEPPAQVVVQTDNGPAIPTIPTRLVLVAVADVPQ 73

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  ++ N + +  +PE  V   F+     P A+++  G + R     G+PIR  K+V   
Sbjct: 74  GTTLSENNMRFEEWPETGVRPSFVTQKDAPEAIKDFSGAIARSSFFAGEPIRDAKIVRSD 133

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIR 175
           +G LS++LP GKRA  ++I+ SS+ GG I PNDHVDV+M R     +       +L NIR
Sbjct: 134 SGYLSAILPAGKRAVAIEITASSSAGGFILPNDHVDVIMARQQDGEQNVIITDTILQNIR 193

Query: 176 VIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK--LSLVLRSIADLNPSSS 231
           V+A+D  I+ +E  +  VG T TLELT  Q + + AAQ + +  L+L LRS+ D     +
Sbjct: 194 VLALDQLIEEEEGKKSTVGETVTLELTAEQVEIVAAAQQINRRGLTLALRSVEDAEIEGT 253

Query: 232 EDSDVWDVQEEGKE---IQIIKAG 252
                     + K    ++II+ G
Sbjct: 254 SAGRKLLSSGDRKSRGTVRIIRYG 277


>gi|91977984|ref|YP_570643.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5]
 gi|91684440|gb|ABE40742.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5]
          Length = 266

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 17/267 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     VA  +A      +               + VL++K D+ +G  
Sbjct: 1   MNTARIVVLTIAIGAGAVAAYLASG--GGNQEAAGPAAPVAELPTVEVLVAKSDIPLGQP 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           V P  ++W  +P       FI    +P A  +L G + R   + G+PIR +KLV   G+G
Sbjct: 59  VGPGDMQWQTWPAATASANFIRRNERPEATTQLAGSIARSQFIAGEPIREQKLVKANGSG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVL 171
            ++++LP G RA + +IS  +  GG I PND VDV++ +                   +L
Sbjct: 119 FMAAILPTGMRAVSTEISPETGAGGFILPNDRVDVILSKRDKNPDRAGSGGDVVNSETIL 178

Query: 172 SNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           SN+RV+AID  I+    ++V+VG TATLEL P QA+ L  A+    LSL LRS+ D N  
Sbjct: 179 SNVRVLAIDQAIEEKNGQKVVVGKTATLELKPEQAEFLARARQSGTLSLALRSLVDANAP 238

Query: 230 SSEDSDVWDVQEEGKEIQIIKAGVIVN 256
           ++ +    ++  +   + +++ GV   
Sbjct: 239 TATE----EIGGKRDSVNVVRYGVSTP 261


>gi|146338124|ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278]
 gi|146190930|emb|CAL74935.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. ORS278]
          Length = 248

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 14/243 (5%)

Query: 22  IAMRLVSPHHVQTEEVITENP-AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           +A  L S    +  +V    P    ++VL++K D+ +G  + P +L+W ++P       F
Sbjct: 1   MAAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSF 60

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISIS 139
           I    +P    E+ G + R P + G+PIR +KLV   G+G ++++LP G RA + +IS  
Sbjct: 61  IRRNERPEGQNEVTGTIARAPFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPE 120

Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAIDHNIDSD--ERVL 190
           +  GG I PND VDV++ +              +  ++L+NIRV+AID        +  +
Sbjct: 121 TGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTTV 180

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           VG T TLEL P QA+ L  A+    LSL LRSIAD+N     +    D +  G  + +++
Sbjct: 181 VGKTVTLELKPEQAETLARARQTGTLSLALRSIADVN---MAEQRSDDNRRRGDSVAVVR 237

Query: 251 AGV 253
            G+
Sbjct: 238 FGI 240


>gi|220922778|ref|YP_002498080.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
 gi|219947385|gb|ACL57777.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
          Length = 267

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/268 (33%), Positives = 136/268 (50%), Gaps = 17/268 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R + I ++ V  L A    M    P             A  ++VL++  DL +G +
Sbjct: 1   MKSSRALLIGIAAVTGLAA-FYMMSGSPPPPPPVVAPPPPMVADTVDVLVAAADLPMGQI 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           + P  L W A+P+ ++ DGF+      NA+++  G  VR P L G+PIR EKL+   G+G
Sbjct: 60  LKPGDLRWQAWPKTSLNDGFLQREQNANALEDTLGSFVRSPFLGGEPIRREKLIKANGSG 119

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMV-------RSLSERKPTVTVV 170
            LS++LP G RA  + I    S+  GG I PND VDV+         R+          +
Sbjct: 120 FLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTHRDEEAARATKSDVQVTETI 179

Query: 171 LSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           L N+RV+A+   +     ERV+ G TATLELTP QA+ +  AQ V +LSL LRS++D   
Sbjct: 180 LKNVRVLAVGQTVQERNGERVVTGDTATLELTPAQAEQITLAQKVGQLSLALRSLSDAGQ 239

Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
              E  +     E+   + +++ GV   
Sbjct: 240 VQPESPE----TEKEPALTVVRYGVSQQ 263


>gi|148258234|ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1]
 gi|146410407|gb|ABQ38913.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. BTAi1]
          Length = 249

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 13/243 (5%)

Query: 22  IAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           +A  L S    +   V    P  + + VL++K D+ +G  + P  L+W ++P       F
Sbjct: 1   MAAYLASGSDDRPAPVAAVAPTVETVEVLVAKSDINLGQSLKPEHLQWQSWPAATTSSSF 60

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISIS 139
           I    +     E+ G++ R P + G+PIR +KLV   G+G ++++LP G RA + +IS  
Sbjct: 61  IQRKDRSKGDAEVTGMIARAPFIAGEPIREQKLVKADGSGFMAAILPAGMRAVSTEISPE 120

Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAIDHNIDSD--ERVL 190
           +  GG I PND VDV++ +     +        +  ++LSNIRV+AID        +  +
Sbjct: 121 TGAGGFILPNDRVDVLLSKRERNPEQPNAGDVISSEIILSNIRVLAIDQAPKEKDGQTTV 180

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           VG T TLEL P QA+ L  A+    LSL LRSIAD+N + +   +  + +  G  + +I+
Sbjct: 181 VGKTVTLELKPEQAETLARARQSGTLSLALRSIADINVAENRSDE--NSRRRGDSVAVIR 238

Query: 251 AGV 253
            G+
Sbjct: 239 FGI 241


>gi|188581659|ref|YP_001925104.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001]
 gi|179345157|gb|ACB80569.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001]
          Length = 260

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 133/261 (50%), Gaps = 7/261 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL  + ++ V    A ++     +P      +     P     VL++  +L +G  
Sbjct: 1   MKPARLAVLGIALVAGCGAALLMGGEKAPEPAPVVKAEPPPPIPMSEVLVAAAELPMGQT 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           + P  L W+ +PE+ +  G ID    P  +++  G ++R      +PIR E+L+  G+G 
Sbjct: 61  LKPEDLRWIPWPEQAIAPGLIDRRAAPKGLEDAVGAIIRTGFSANEPIRPERLIKAGSGF 120

Query: 121 LSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
           +S++LP G RA  +      SS+ GG I PNDHVD++   +    +     +L+++RV+A
Sbjct: 121 MSAILPPGMRAVAITTDTRGSSSAGGFILPNDHVDIIKTSNEGSDQ-FAETLLTDVRVLA 179

Query: 179 IDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           +   +       V+   TAT+ LTP QA+ +  AQ V +LSLVLRSI D    ++  S+ 
Sbjct: 180 VGQIVQDKNGANVVTAETATVALTPAQAETVTLAQKVGQLSLVLRSIQDSA-RTAALSEE 238

Query: 237 WDVQEEGKEIQIIKAGVIVNK 257
            D+  EG  + +++ GV   +
Sbjct: 239 ADLPPEGP-MTVVRFGVAKQQ 258


>gi|163757626|ref|ZP_02164715.1| pilus assembly protein [Hoeflea phototrophica DFL-43]
 gi|162285128|gb|EDQ35410.1| pilus assembly protein [Hoeflea phototrophica DFL-43]
          Length = 269

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 108/266 (40%), Positives = 165/266 (62%), Gaps = 12/266 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSP----HHVQTEEVITENPAKFINVLISKGDLA 56
           MK  R++ + V+ + A +AG +AM L +P    + +    VI + P   ++VL+    L 
Sbjct: 1   MKPARVVIMAVAVLAAGLAGYLAMNLTAPTVQVNEISATPVIEKMP--TLDVLVVSASLP 58

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           VG  +    +EW  +PE+ V +G I    +P+A+ EL G +VR+P+  G+P+R EK+VD 
Sbjct: 59  VGARLNEETMEWKGWPEDAVTEGLIRRESRPDAITELTGSIVRLPLFTGEPLRPEKIVDS 118

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIR 175
            +  +SSLLP GKRA   +IS++++ GG I PND VDV+MVR  +E++     V+LSNIR
Sbjct: 119 SSRIMSSLLPAGKRAIATEISVATSAGGFILPNDRVDVIMVRRKTEQEGFLTEVILSNIR 178

Query: 176 VIAIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231
           V+AID  I+ D    R  VG+TATLELTP Q+K +  AQ +A +L+L LRS+AD+    +
Sbjct: 179 VLAIDQRIEEDAQGNRTAVGTTATLELTPDQSKIITVAQQMADRLTLALRSVADVQEPDT 238

Query: 232 EDSDVWDVQEEG-KEIQIIKAGVIVN 256
           + +      E+G   IQ+I++G I N
Sbjct: 239 DGAKHLLSGEDGTSAIQLIRSGAITN 264


>gi|209886527|ref|YP_002290384.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
 gi|209874723|gb|ACI94519.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
          Length = 272

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 10/219 (4%)

Query: 26  LVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84
           L S    +  EV    P  +  +VL++K D+ +G  +    + W  +P       FI   
Sbjct: 22  LASGSDQKPAEVAAPAPKLETTDVLVAKADIPLGQTIKAEDMTWQTWPAATASSSFIRKS 81

Query: 85  HQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVG 143
            + +A+ +L G + R P L G+PIR  KLV   G+G ++++LP G RA + +IS  +  G
Sbjct: 82  ERASAVADLTGSIARSPFLAGEPIRETKLVKSNGSGFMAAILPSGMRAVSTEISPETGAG 141

Query: 144 GMIKPNDHVDVVMVRSLSERKPT------VTVVLSNIRVIAIDHNIDSD--ERVLVGSTA 195
           G I PND VDV++ R                ++LS++RV+AID  I+    ++V+VG TA
Sbjct: 142 GFILPNDRVDVMLSRRQRNPDSNGGEMVSSEIILSDVRVLAIDQTIEEKNGQKVVVGKTA 201

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           TLEL P QA+ L  ++    L+L LRS+ D N  +  + 
Sbjct: 202 TLELKPAQAEMLTRSRQSGTLTLALRSLVDANKQNEVEE 240


>gi|254473714|ref|ZP_05087109.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062]
 gi|211957100|gb|EEA92305.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062]
          Length = 259

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 12/262 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +RL+ ++++     +A  + +   S    QT  V+ E     + +L++  DL VG  
Sbjct: 1   MKASRLLVLIIALSAGGLAAWLNLSSGSREPAQTI-VVQEQEIPSLEILVAAQDLKVGTA 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   L W  +PEE+V DG I     P A +E  G +++  +  G+PIR E+L++   G 
Sbjct: 60  LTEGDLSWAKWPEESVSDGVILRSSSPQADEEFLGQIIKAAMFSGEPIRAERLINTDKGF 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIA 178
           L+++LPKGKRA  + +   S  GG I P D VDV++     +R        +L NI+V+A
Sbjct: 120 LAAILPKGKRAVAVPVDAVSTAGGFILPGDKVDVLISMQAKKRDEGFISETLLENIKVLA 179

Query: 179 IDHNIDSDERVL---VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           ID    S+          TATLEL P +A+ +  A  +  LSL LRS AD      +   
Sbjct: 180 IDTTTASENSEKAMSPDQTATLELFPHEAETIARATQMGTLSLSLRSAADSKDGVKQPPR 239

Query: 236 VWDVQEEGKEIQIIKAGVIVNK 257
           V         ++ +K G+    
Sbjct: 240 VKG------GVKFVKYGIASQS 255


>gi|27376551|ref|NP_768080.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349692|dbj|BAC46705.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 269

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 130/264 (49%), Gaps = 17/264 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + V+     VA  +A       +              ++VL++K D+ +G  
Sbjct: 4   MNRARIVVLTVAICAGGVAAYLAS---GSDNSAPPPAAPVAQLPTVDVLVAKNDIGLGQT 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           V P  ++W  +P       FI    +P  + ++ G + R P ++G+PIR +KLV   G+G
Sbjct: 61  VKPEDVQWQTWPAATASATFIRRNERPEGVTQVTGSIARAPFIQGEPIRDQKLVKAEGSG 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVL 171
            ++++LP G RA + +IS  +  GG I PND VDV++ R L    P        T  ++L
Sbjct: 121 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVLLTRRLKNPDPSNGAPDIVTSEIIL 180

Query: 172 SNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           +NIRV+AID        +  +VG T TLEL P Q   L AA+    LSL LRSI D+   
Sbjct: 181 ANIRVLAIDQAPKEKDGQNTVVGKTVTLELNPTQTATLSAARQSGTLSLALRSIVDV--- 237

Query: 230 SSEDSDVWDVQEEGKEIQIIKAGV 253
              +  + D  +    + II+ G+
Sbjct: 238 KMSEITLDDSAQRRDGVSIIRYGI 261


>gi|300704929|ref|YP_003746532.1| pilus assembly (cpab), transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072593|emb|CBJ43943.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum CFBP2957]
          Length = 284

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 127/248 (51%), Gaps = 30/248 (12%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++  ++++ +  L A + A R +S           ++ +    V+++  D+ +G 
Sbjct: 1   MKNLRILSMLLIATIAGLAAVVFASRWLSQ----------QSNSGITKVVVAAADIDLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            ++P+ ++ V +P  ++  G I D H       LDG +VR  +++G+P+   KL  +G  
Sbjct: 51  RLSPDFIKTVDWPSASLPPGAISDTH------ALDGRVVRTSLIRGEPVLESKLTPQGTA 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----------VRSLSERKPTV 167
           GGLS+++  GKRA T+ ++    V G   P  +VD+++                  +   
Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164

Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+   ++ D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D 
Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224

Query: 227 NPSSSEDS 234
           +P+ +  +
Sbjct: 225 HPADTAGA 232


>gi|83749639|ref|ZP_00946622.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum
           UW551]
 gi|207728107|ref|YP_002256501.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
 gi|207744157|ref|YP_002260549.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
 gi|83723700|gb|EAP70895.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum
           UW551]
 gi|206591352|emb|CAQ56964.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
 gi|206595561|emb|CAQ62488.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
          Length = 284

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 127/248 (51%), Gaps = 30/248 (12%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++  ++++ +  L A + A R +S           ++ +    V+++  D+ +G 
Sbjct: 1   MKNLRILSMLLIATIAGLAAVVFASRWLSQ----------QSSSGITKVVVAAADIDLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            ++P+ ++ V +P  ++  G I D H       LDG +VR  +++G+P+   KL  +G  
Sbjct: 51  RLSPDFIKTVDWPSASLPPGAISDTH------ALDGRVVRTSLIRGEPVLESKLTPQGTA 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----------VRSLSERKPTV 167
           GGLS+++  GKRA T+ ++    V G   P  +VD+++                  +   
Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164

Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+   ++ D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D 
Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224

Query: 227 NPSSSEDS 234
           +P+ +  +
Sbjct: 225 HPADTAGA 232


>gi|86355863|ref|YP_467755.1| pilus assembly protein [Rhizobium etli CFN 42]
 gi|86279965|gb|ABC89028.1| pilus assembly protein [Rhizobium etli CFN 42]
          Length = 271

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 113/265 (42%), Positives = 163/265 (61%), Gaps = 6/265 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AMR+     V T+          +N+L+S  +L VG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIKKEPTVNILVSNKNLPVGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W+A+P+E V  GFI +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LGDDSVHWMAWPKEGVVQGFITEADRPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   +   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKTVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDG 259
                + G   IQ+IK+G IV   G
Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDAG 265


>gi|118589702|ref|ZP_01547107.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614]
 gi|118437788|gb|EAV44424.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614]
          Length = 256

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 131/265 (49%), Gaps = 14/265 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVG 58
           MK+ R+   V++   A       M ++S +     +++    A+     VL+++ D+ +G
Sbjct: 1   MKIARI--FVLAIAVAAGIIAFRMVMMSGNKPAEPQIVQAPVAEQTKTQVLVAQRDIPLG 58

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             ++P+ + W  +PE+ V  G +     P A +E  G + R PI  G+P+R E+L++   
Sbjct: 59  AKLSPDDMSWANWPEDAVPFGAVTKEAAPLANEEYAGRIARAPIFAGEPVRPERLINTDK 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
           G ++++LPKGKRA  + +   ++ GG I P D VDV++ R  S+       +L NIRV+A
Sbjct: 119 GFMAAILPKGKRAIAVSVEEETSAGGFILPGDKVDVILTRK-SDTSAVSETILENIRVLA 177

Query: 179 IDHNIDSDERVL---VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           ID     ++         TATLEL+  Q++ +  +Q +  ++L LRS  D         D
Sbjct: 178 IDSTTAGEQEQKNLSPKRTATLELSLPQSEIIAQSQQIGTIALALRSAQDSAD------D 231

Query: 236 VWDVQEEGKEIQIIKAGVIVNKDGE 260
             D     + +  +K GV      +
Sbjct: 232 AEDDGGRRRGVSYVKYGVTSQAGAQ 256


>gi|299067806|emb|CBJ39017.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum CMR15]
          Length = 295

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 31/250 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ +++    A +AG+ AM   S   +Q      +  +    V ++  D+ +G  
Sbjct: 8   MKNLRILSMLL---IATIAGLAAMLFASRWLIQ------QGNSGTTKVAVAAVDVNLGQR 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           ++P  +  V +P  ++  G I D H       +DG + R  +  G+P+   KL   G  G
Sbjct: 59  LSPEFIRLVDWPAASLPPGAISDEH------AIDGRVTRTSLSPGEPVLESKLTPVGTKG 112

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------------ERKP 165
           GLS+++  GKRA T+ ++    V G   P  +VD+++                   E   
Sbjct: 113 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQEAPDGKPAKGAQADREEHS 172

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
              +VL  I V+A+   ++ DE +  V +  TLE+TP +A+ L  A+SV  LSLVLR+  
Sbjct: 173 ISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQV 232

Query: 225 DLNPSSSEDS 234
           D  P  +  +
Sbjct: 233 DPRPVDTAGA 242


>gi|163851902|ref|YP_001639945.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1]
 gi|254561620|ref|YP_003068715.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4]
 gi|163663507|gb|ABY30874.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1]
 gi|254268898|emb|CAX24859.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4]
          Length = 261

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 134/262 (51%), Gaps = 8/262 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  RL  + ++ V    A ++      +P      +     P     VL++  +L +G 
Sbjct: 1   MKPARLAVLGIALVAGCGAALLMQGEEKAPEPAPVAKAEPVAPVPMSEVLVAAAELPMGQ 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            + P  L W+A+PE+ +  G I+    P  +++  G ++R      +PIR E+LV  G+G
Sbjct: 61  TLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERLVKAGSG 120

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
            +S++LP G RA  +      SS+ GG + PNDHVDV+   S    +     +L+++RV+
Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179

Query: 178 AIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+   +       V+   TATL LTP QA+ +  AQ V +LSLVLRSI D    ++  S+
Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQDSA-RTAALSE 238

Query: 236 VWDVQEEGKEIQIIKAGVIVNK 257
             D+  EG  + +++ GV   +
Sbjct: 239 EADMPPEGP-MTVVRFGVAKQQ 259


>gi|240139025|ref|YP_002963500.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1]
 gi|240008997|gb|ACS40223.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1]
          Length = 261

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 134/262 (51%), Gaps = 8/262 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  RL  + ++ V    A ++      +P      +     P     VL++  +L +G 
Sbjct: 1   MKPARLAVLGIALVAGCGAALLMQGEEKAPEPAPVAKAEPVVPVPMSEVLVAAAELPMGQ 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            + P  L W+A+PE+ +  G I+    P  +++  G ++R      +PIR E+LV  G+G
Sbjct: 61  TLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERLVKAGSG 120

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
            +S++LP G RA  +      SS+ GG + PNDHVDV+   S    +     +L+++RV+
Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179

Query: 178 AIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+   +       V+   TATL LTP QA+ +  AQ V +LSLVLRSI D    ++  S+
Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQDSA-RTAALSE 238

Query: 236 VWDVQEEGKEIQIIKAGVIVNK 257
             D+  EG  + +++ GV   +
Sbjct: 239 EADMPPEGP-MTVVRFGVAKQQ 259


>gi|190889880|ref|YP_001976422.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|218509313|ref|ZP_03507191.1| pilus assembly protein [Rhizobium etli Brasil 5]
 gi|190695159|gb|ACE89244.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|327194695|gb|EGE61541.1| pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 271

 Score =  211 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 114/265 (43%), Positives = 163/265 (61%), Gaps = 6/265 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AMR+     V T+          +NVL+S G+LAVG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I ++ +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LEEGSVHWMAWPQGGVVPGLITEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   +   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDG 259
                + G   IQ+IK+G IV   G
Sbjct: 241 YLLSGDNGSAIIQVIKSGSIVTDAG 265


>gi|307943144|ref|ZP_07658489.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4]
 gi|307773940|gb|EFO33156.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4]
          Length = 256

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 129/266 (48%), Gaps = 16/266 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVG 58
           MK  RL  + V    A+ AG++A RLVS    + E V  +T    +   VL++  D+ +G
Sbjct: 1   MKYARLAILGV----AVGAGLLAARLVSTSAPEPEPVAEVTAPTIEKTEVLVASSDITLG 56

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  +   W ++P E +  G +     P AM+ L G + R PI  G+PIR E+L+    
Sbjct: 57  SKLGGSDFTWASWPTEALPAGVLTKDDDPEAMERLVGQVTRTPIFSGEPIREERLIRTDK 116

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVI 177
           G ++++LPKG RA  + +   +  GG I P D VDV++ ++  E        +L N+RV+
Sbjct: 117 GFMAAILPKGMRAIAVSVEAETTAGGFILPGDKVDVILTKASGETGSAVSNTILENVRVL 176

Query: 178 AIDHNIDSDERVLVG---STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           AID     D+         TATLEL   Q++ +  AQ V  +SL LRS  D   ++ +  
Sbjct: 177 AIDAVTAGDQDEKNVSPDRTATLELNLPQSEIISQAQQVGTISLALRSAQDSADNAEQTV 236

Query: 235 DVWDVQEEGKEIQIIKAGVIVNKDGE 260
                    + +  +K G+      +
Sbjct: 237 ------RRKRAVNFVKYGLTSQAASQ 256


>gi|17545375|ref|NP_518777.1| pilus assembly transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17427667|emb|CAD14186.1| probable pilus assembly cpab transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 288

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 31/250 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ +++    A +AG+ AM   S   +Q      +  +    V ++  D+ +G  
Sbjct: 1   MKNLRILSMLL---IATIAGLAAMLFASRWLIQ------QGNSGTTKVAVAAVDVNLGQR 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           ++P  +  V +P  ++  G I D H       +DG + R  +  G+P+   KL   G  G
Sbjct: 52  LSPEFIRLVDWPAASLPPGAISDEH------AIDGRVTRTSLSPGEPVLESKLTPVGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------------ERKP 165
           GLS+++  GKRA T+ ++    V G   P  +VD+++                   E   
Sbjct: 106 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQETPDGKPAKGAQADREEHS 165

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
              +VL  I V+A+   ++ DE +  V +  TLE+TP +A+ L  A+SV  LSLVLR+  
Sbjct: 166 ISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQV 225

Query: 225 DLNPSSSEDS 234
           D  P  +  +
Sbjct: 226 DPRPVDTAGA 235


>gi|218530653|ref|YP_002421469.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum
           CM4]
 gi|218522956|gb|ACK83541.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum
           CM4]
          Length = 261

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 133/262 (50%), Gaps = 8/262 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  RL  + ++ V    A ++      +P  V   +     P     VL++  +L +G 
Sbjct: 1   MKPARLAVLGIALVAGCGAALLMQGEEKAPEAVPVAKAEPVAPVPMSEVLVAAAELPMGQ 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            + P  L W+A+PE+ +  G I+    P  +++  G ++R      +PIR E+LV  G+G
Sbjct: 61  TLKPEDLRWLAWPEQAISPGLIERRAAPKGLEDAVGAIIRTGFSANEPIRPERLVKAGSG 120

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
            +S++LP G RA  +      SS+ GG + PNDHVDV+   S    +     +L+++RV+
Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179

Query: 178 AIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+   +       V+   TATL LTP QA+ +  AQ V +LSLVLRSI D    ++   +
Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQDSA-RTAALFE 238

Query: 236 VWDVQEEGKEIQIIKAGVIVNK 257
              +  EG  + +++ GV   +
Sbjct: 239 EAGMPPEGP-MTVVRFGVAKQQ 259


>gi|13474659|ref|NP_106228.1| pilus assembly protein cpaB [Mesorhizobium loti MAFF303099]
 gi|14025414|dbj|BAB52014.1| pilus assembly protein; CpaB [Mesorhizobium loti MAFF303099]
          Length = 271

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/266 (34%), Positives = 142/266 (53%), Gaps = 12/266 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M  +RL+ + V+   A  AG +A  +V+    Q   +           +VL+  GD+A+G
Sbjct: 1   MPASRLIILSVAVAAAGGAGYVAKNMVAAPPPQIVVDSGPQAPAVPLQDVLVLSGDVAMG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  N + W ++P + V   FI   + P+A+++L G + RVP+  G+P+R  KL+  G 
Sbjct: 61  NALQ-NNISWQSWPADGVNANFITKANAPDALEKLKGSIARVPMYAGEPVRRSKLIGEGQ 119

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNI 174
             +SS+LP G RA    IS  ++ GG I PND VDV+M R               +L NI
Sbjct: 120 SFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGSTGFNTETILKNI 179

Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230
           RV+AID  I  DE   +  VG TATLELTP QA+ +  AQ +A +L+L LR++AD    +
Sbjct: 180 RVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAVADTQEKN 239

Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIV 255
             ++D        K  +++IK+G + 
Sbjct: 240 VGEADYLVSGNGRKGTVRLIKSGEVS 265


>gi|260461950|ref|ZP_05810195.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
 gi|259032197|gb|EEW33463.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
          Length = 271

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 12/266 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M  +RL+ + V+   A  AG +A  +V+P   Q   +           +VL+  GD+A+G
Sbjct: 1   MPASRLIILSVAVAAAGGAGYVAKNMVAPPPAQIVVDSGPKAPAVALQDVLVLSGDVAMG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  N + W  +P + +   FI     P+A+++L G + RV +  G+P+R  KL+  G 
Sbjct: 61  NQL-ENNIAWQPWPADGINPNFITKATAPDALEKLKGSIARVGMYAGEPVRRSKLIGEGQ 119

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNI 174
             +SS+LP G RA    IS  ++ GG I PND VDV+M R               +L NI
Sbjct: 120 SFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGSTGFNTETILKNI 179

Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230
           RV+AID  I  DE   +  VG TATLELTP QA+ +  AQ +A +L+L LR+I D    +
Sbjct: 180 RVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAITDTQEKN 239

Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIV 255
            +++D        K  +++IK+G + 
Sbjct: 240 VDEADYLVSGNGRKGTVRLIKSGEVS 265


>gi|39937141|ref|NP_949417.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris CGA009]
 gi|39650999|emb|CAE29522.1| possible pilus assembly protein cpaB [Rhodopseudomonas palustris
           CGA009]
          Length = 270

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 16/261 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+L++   +V+    A  A    +   S      +        + ++VL++K ++A+G +
Sbjct: 1   MRLSKPRIVVLGIALAAGAAAAFLASSSDSERPRQVAEPAPQLQTVDVLVAKSNIALGQL 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           VTP+ + W ++P ++  + F+     PN    L G + R P + G+PIR  KLV   G+G
Sbjct: 61  VTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAGEPIREVKLVKPNGSG 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172
            ++++LP G RA + +IS  ++ GG I PND VDV++ +              T T +L+
Sbjct: 121 FMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSDIPGAKDTVTSTTILT 180

Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+RV+AID        + V+VG TATLELT  QA+ L  A+    LSL LRSIAD     
Sbjct: 181 NVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGTLSLALRSIADARIV- 239

Query: 231 SEDSDVWDVQEEGKEIQIIKA 251
           +E SD  D     K+I + + 
Sbjct: 240 AEASDQGD-----KQITVYRG 255


>gi|192292976|ref|YP_001993581.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
 gi|192286725|gb|ACF03106.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
          Length = 270

 Score =  208 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 16/261 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+L++   +V+    A  A    +   S      +        + ++VL++K ++A+G +
Sbjct: 1   MRLSKPRIVVLGIALAAGAAAAFLASSSDSERPRQVAEPAPQLQTVDVLVAKSNIALGQL 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           VTP+ + W ++P ++  + F+     PN    L G + R P + G+PIR  KLV   G+G
Sbjct: 61  VTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAGEPIREVKLVKPNGSG 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172
            ++++LP G RA + +IS  ++ GG I PND VDV++ +              T T +L+
Sbjct: 121 FMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSDIPGAKDTVTSTTILT 180

Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+RV+AID        + V+VG TATLELT  QA+ L  A+    LSL LRSIAD     
Sbjct: 181 NVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGTLSLALRSIADARVV- 239

Query: 231 SEDSDVWDVQEEGKEIQIIKA 251
           +E SD  D     K+I + + 
Sbjct: 240 AEASDQGD-----KQITVYRG 255


>gi|319785609|ref|YP_004145085.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171497|gb|ADV15035.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 270

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 93/266 (34%), Positives = 144/266 (54%), Gaps = 13/266 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGM 59
           M  +RL+ + V+   A  AG +A  +V+P      +   + PA    +VL+  GD+ +G 
Sbjct: 1   MPASRLIILSVAVAAAGGAGYVAKNMVAPPPQVVVDSAPQAPAVALQDVLVLSGDVPMGS 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +  N + W ++P + V   FI    +P A+ +L G + RV +  G+P+R  KL+  G  
Sbjct: 61  PIQ-NNIAWQSWPADGVNANFITRTAEPEALDKLKGSIARVAMYAGEPLRRSKLIGEGQS 119

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIR 175
            +SS+LP G RA    IS  ++ GG I PND VDV+M R               +L NIR
Sbjct: 120 FMSSILPSGMRAVATAISADTSAGGFILPNDFVDVIMTRRADAASGAAGFNTETILKNIR 179

Query: 176 VIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231
           V+AID  I  DE   +  VG TATLELTP QA+ +  AQ +A +L+L LR++AD    + 
Sbjct: 180 VLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAVADTQEKNV 239

Query: 232 EDSDVWDVQEEGKE--IQIIKAGVIV 255
            ++D + V   G+   +++IK+G + 
Sbjct: 240 GEAD-YLVSGNGRRGTVRLIKSGEVS 264


>gi|254255253|ref|ZP_04948569.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
 gi|124900990|gb|EAY71740.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
          Length = 323

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 21/240 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R + +    V A+VAG+ A+   S   VQT            +V ++  DL +G  
Sbjct: 43  MKNSRAVMM---LVVAMVAGLAAVVFASHWLVQTSTSA------VTSVAVAATDLNLGEP 93

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +  N +  V++P  +V  G   D       + L+G +VR  + +G+P+   KL   G  G
Sbjct: 94  LGANQIHMVSWPSGSVPTGAFTDT------KALEGRVVRTSLARGEPVIESKLAPIGTKG 147

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175
           GLS+++ +G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I 
Sbjct: 148 GLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHIL 207

Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ +
Sbjct: 208 VLAVAQQVSRDDTAPKVVNAVTLEVTPEQAERLDLARSVGTLSLVLRNQIDKQTLNTDGA 267


>gi|254502627|ref|ZP_05114778.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11]
 gi|222438698|gb|EEE45377.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11]
          Length = 256

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 128/259 (49%), Gaps = 12/259 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ + ++    ++A    + +      Q              VL +  D+ +G  
Sbjct: 3   MKFARILVLAIAVAAGVLA-FRMVMMSGGSSDQASNAPVPLEQAKGQVLTAATDILLGAK 61

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   + W  +PEE V  G +     P+A +EL G + + PI KG+PIR E+L++   G 
Sbjct: 62  LTAEDMVWTDWPEEAVPIGAVTKQVNPSASEELMGQIAKTPIFKGEPIRPERLINTDKGF 121

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +S++LPKGKRA  + +   +  GG I P D VDV++ R   +       +L NIRV+AID
Sbjct: 122 MSAILPKGKRAIAVSVEAETTAGGFILPGDKVDVILTRRTDDT-AISETILENIRVLAID 180

Query: 181 HNI--DSDERVL-VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
                + D++ L    TATLELT  Q++ +  +Q V  ++L LRS  D        +D  
Sbjct: 181 TTTAGEQDQKNLSPQRTATLELTLGQSEVVAQSQQVGAIALALRSAQDS-------ADDA 233

Query: 238 DVQEEGKEIQIIKAGVIVN 256
           +  E  + + ++K G+   
Sbjct: 234 EPTETRRGVNLVKYGITSQ 252


>gi|241207156|ref|YP_002978252.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861046|gb|ACS58713.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 271

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 110/265 (41%), Positives = 161/265 (60%), Gaps = 6/265 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AM++     V T+          +N+L+S G+L+VG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMQMAGSGGVVTQVRSVVEKEPTVNILVSSGNLSVGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LDDQAVHWMAWPQGGVVPGLITETDKPDAIKDLQGAVVRLPIFEGEPIRPEKIADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E        VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGAEADKLITETVLSNVRVLAI 180

Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   +   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKSVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDG 259
                + G   IQ+IK+G IV   G
Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDAG 265


>gi|325525577|gb|EGD03367.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49]
          Length = 277

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 21/240 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK++R + +    V A++AG  A+   S   VQT        +    + ++  DL +G  
Sbjct: 1   MKISRAVMM---LVIAMIAGFAAVVFASRWLVQTST------SSVTPIAVAATDLNLGEP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + PN +  V++P  +V  G   D       +ELDG +VR  + +G+P+   KL   G  G
Sbjct: 52  LGPNQVHTVSWPTGSVPPGAFTDP------KELDGRVVRTSLARGEPVIESKLAPVGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175
           GLS+++ +G RA T+ ++    V G   P ++VDV++     +  S+ +    +VL +I 
Sbjct: 106 GLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQAQQGKSDGQSISKIVLEHIL 165

Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ +
Sbjct: 166 VLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQIDKQTLNTDGA 225


>gi|110632966|ref|YP_673174.1| putative CpaB2 pilus assembly protein [Mesorhizobium sp. BNC1]
 gi|110283950|gb|ABG62009.1| putative CpaB2 pilus assembly protein [Chelativorans sp. BNC1]
          Length = 267

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 6/236 (2%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ ++ +     +A  +AM    P   Q    + +       VL++  DL  G V+ 
Sbjct: 1   MVRILILLFALGSGGIAAWLAMGTAEPTASQPAAAVEQEADPAREVLVAGADLVHGSVLD 60

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + L W  +    V   FI    +P+A Q L G LVR   + G+PIR ++L   G G LS
Sbjct: 61  ESHLRWQPWTAGTVPAVFISRAAKPDAPQALKGSLVRGGFVAGEPIREDRLALPGAGFLS 120

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRVIA 178
             LP GKRA  + ++  SA GG I PND VD++            + +   +LSNIRV+A
Sbjct: 121 GQLPSGKRAIAVRVTAESAAGGFILPNDRVDLIHTSVLSGQSGGEQVSSRTILSNIRVLA 180

Query: 179 IDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +D N   +SD   +V  TATLE+ P Q   + AA++   +SL LR+ +D +  ++ 
Sbjct: 181 VDQNASGESDGEAVVAKTATLEVEPDQIPIVTAAEASGTISLALRAASDEDEPAAA 236


>gi|134291858|ref|YP_001115627.1| SAF domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134135047|gb|ABO59372.1| SAF domain protein [Burkholderia vietnamiensis G4]
          Length = 281

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 124/241 (51%), Gaps = 23/241 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R ++ +VV+ V  L A + A R +          +  +     +V ++  DL +G 
Sbjct: 1   MKNSRAILMLVVAMVAGLAAVVFASRWL----------MNTSNGSVTSVAVATTDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL   G  
Sbjct: 51  PLGPNQIHMVSWPAGSVPTGAFTDT------KELEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDHKTLTTDG 224

Query: 234 S 234
           +
Sbjct: 225 A 225


>gi|296156488|ref|ZP_06839326.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
 gi|295893087|gb|EFG72867.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
          Length = 269

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 121/252 (48%), Gaps = 25/252 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            ++++ +  L A + A R +          ++++      V+++  D+ +G  + P+ L+
Sbjct: 1   MLLIATLAGLTAVVFASRWM----------VSQSSNATTKVVVAATDINLGQRIGPDFLK 50

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126
              +P  +V  G   D+      Q+LDG +++  +L G+P+   KL   G  GGLS+++ 
Sbjct: 51  LTEWPSNSVPPGSFTDI------QKLDGRVLKESLLHGEPVLEAKLTPVGTLGGLSAVIG 104

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAI 179
           +GKRA T+ ++    V G   P ++VD+++      R P          +VL  I V+A+
Sbjct: 105 EGKRAITVRVNDVIGVAGFALPGNYVDIIVNTQKDARDPGTQRDQNISKIVLEKILVLAV 164

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
              +  DE +  V    TLE++P QA+ +  A+S+  LSLVLR+  D     +  +    
Sbjct: 165 AQEVGRDETKPKVVDAVTLEVSPEQAEKIDLARSIGTLSLVLRNQIDPQAIDTAGATKAT 224

Query: 239 VQEEGKEIQIIK 250
           + +    +  + 
Sbjct: 225 LLKTPVAVAPVP 236


>gi|170750188|ref|YP_001756448.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM
           2831]
 gi|170656710|gb|ACB25765.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM
           2831]
          Length = 271

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 124/270 (45%), Gaps = 14/270 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R   + ++      A  + M    P            P    +VL++  D+ +G V
Sbjct: 1   MNPARFAVLGIALAAGTGAAFL-MSGGDPPPPPPPPAAEAPPQPTTDVLVAAIDMPMGQV 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L W  +P+  V +G++     P A++E  G  VR   L G+PIR +KLV   +G 
Sbjct: 60  LRAADLRWQPWPDGAVANGYMTRKINPKALEETVGASVRSGFLTGEPIRAQKLVRPESGF 119

Query: 121 LSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVL 171
           ++++LP G RA  +      +++ GG I PND VDV+                     +L
Sbjct: 120 MAAILPPGMRAVAIVTDSRGTNSAGGFILPNDRVDVIRTFRDESNSRANNSDVQLSQTIL 179

Query: 172 SNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-- 227
           ++IRV+AI   +       V+ G TATL +TP QA+ L  AQ V  L+L LRS+AD    
Sbjct: 180 TDIRVLAIGQLVQEKNGTNVVTGETATLAVTPAQAETLALAQKVGALTLSLRSLADAGRP 239

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           P ++  ++    Q     + +++ GV   +
Sbjct: 240 PEATPLAEASAAQMPEPALTVVRFGVARQQ 269


>gi|90419763|ref|ZP_01227672.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335804|gb|EAS49552.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 293

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/228 (38%), Positives = 130/228 (57%), Gaps = 11/228 (4%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
                E P K   VL++  DL++G  V    L+W ++PE+ +    I    +P+A++ L 
Sbjct: 58  TAAPAEPPIKLAEVLVTSRDLSMGEAVD-EALDWQSWPEDGIGPTLIRKSDRPDALETLK 116

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           G L R     G+P+R  KL+    G +S++LP GKRA  + I+  ++ GG + PNDHVDV
Sbjct: 117 GSLARQSFFAGEPVRESKLIRSDQGFMSAVLPAGKRAVAVQIAAETSAGGFVLPNDHVDV 176

Query: 155 VMVRSLS-----ERKPTVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKAL 207
           +M R +S       +     VL N+RV+AID  I     E+V+VGSTATLE+ P QA+AL
Sbjct: 177 IMTRRVSSSENRGDQVLTETVLRNLRVLAIDQTIQEKDGEKVVVGSTATLEVDPEQAEAL 236

Query: 208 VAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGK--EIQIIKAG 252
            AAQ +A +L L LRS+AD  P S   +     QE  +  +I++++ G
Sbjct: 237 TAAQQIADRLVLSLRSLADSVPGSPGYAAFLLAQENARNGKIRVVRYG 284


>gi|295700371|ref|YP_003608264.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002]
 gi|295439584|gb|ADG18753.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002]
          Length = 276

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R + +      A++AG+ A+   S   +QT            +V ++  D+++G  
Sbjct: 1   MKNSRALVM---LTIAVLAGLAAVSFASRWLLQTSSAA------VTSVAVASSDISLGQP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +  N++  V++P  +V  G   D       + L+G ++   +  G+P+   KL  +G  G
Sbjct: 52  LNQNLIHMVSWPTSSVPPGAFADS------KALEGRVLLTSLAPGEPVLESKLAPQGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIR 175
           GLS+++ +G RA T+ ++    V G   P ++VDV++    + +    +    +VL  I 
Sbjct: 106 GLSAVIGEGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQQANKTDASQSISKIVLEKIL 165

Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    S+  +
Sbjct: 166 VLAVAQRVSRDDTAPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDKQTPSTGGA 225


>gi|116249980|ref|YP_765818.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254628|emb|CAK05702.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 271

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 108/264 (40%), Positives = 159/264 (60%), Gaps = 6/264 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AM++     V T+          +N+L+S  +L+VG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMQMAGSGGVVTQVRSVVEKEPTVNILVSSANLSVGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LDDQSVHWMAWPQGGVVPGLITEADKPDAVKDLQGAVVRLPIFEGEPIRPEKIADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E        VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGAEADKLITETVLSNVRVLAI 180

Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   +   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKSVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKD 258
                + G   IQ+IK+G IV   
Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDA 264


>gi|197295152|ref|YP_002153693.1| putative flp type pilus assembly protein [Burkholderia cenocepacia
           J2315]
 gi|195944631|emb|CAR57235.1| putative flp type pilus assembly protein [Burkholderia cenocepacia
           J2315]
          Length = 279

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 23/241 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R +M +VV+ +  L A + A   +          +  +     +V ++  DL +G 
Sbjct: 1   MKNSRAVMMLVVAMIAGLAAVVFASHWL----------MQTSTNSVTSVAVATTDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            + PN +  V++P  +V  G   D       + L+G +VR  + +G+P+   KL   G  
Sbjct: 51  PLGPNQIHMVSWPSGSVPTGAFTDT------KALEGRVVRTSLSRGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLNTDG 224

Query: 234 S 234
           +
Sbjct: 225 A 225


>gi|170692565|ref|ZP_02883727.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
 gi|170142221|gb|EDT10387.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
          Length = 278

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 23/242 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R + +      AL+AG+ A+   S   +QT             V ++  ++++G  
Sbjct: 1   MKTSRAIVM---LGMALLAGLAAVGFASRWLLQTSSSA------LTPVAVATAEVSLGQP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +   ++  V +P  +V  G   D       + LDG +VR  +  G+P+   KL  +G  G
Sbjct: 52  LNSTMIRTVNWPTASVPPGAFKDP------KALDGRVVRASLEPGEPVIESKLAPQGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSN 173
           GLS+++ +GKRA T+ ++    V G   P ++VDV++     E      ++    +VL  
Sbjct: 106 GLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAKTADPQQSISKIVLEK 165

Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D     + 
Sbjct: 166 ILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLVLRNQIDDRALPTG 225

Query: 233 DS 234
            +
Sbjct: 226 GA 227


>gi|186474102|ref|YP_001861444.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
 gi|184196434|gb|ACC74398.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
          Length = 282

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 30/248 (12%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R L+ ++V+    L A + A R +          + +       V+I+  D+++G 
Sbjct: 1   MKNARALVMLLVATAAGLAAVVFAARWM----------VQQTSTSTTKVVIASADMSLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            V+P +L+   +P  +V  G  +DV      ++L+G +++  + +G+P+   KL   G  
Sbjct: 51  RVSPEMLKVSDWPAGSVPPGTFNDV------KKLEGRVLKASLSRGEPVLEAKLSPVGTL 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTV 167
           GGLS+++ +GKRA T+ ++    V G   P ++VD+++                  +   
Sbjct: 105 GGLSAVINEGKRAITVRVNDVIGVAGFALPGNYVDILVNTEKENASREGAGASGRDQNIS 164

Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+      DE +  V    TLE+TP QA+ +  A+S+  LSLVLR+  D 
Sbjct: 165 KIVLEKILVLAVAQEAGRDETKPKVVDAVTLEVTPEQAEKIDLARSIGSLSLVLRNQVDP 224

Query: 227 NPSSSEDS 234
             +S+  +
Sbjct: 225 QDTSTAGA 232


>gi|85373132|ref|YP_457194.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594]
 gi|84786215|gb|ABC62397.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594]
          Length = 371

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 123/253 (48%), Gaps = 17/253 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +A R +       E        +   VL+++  L VG ++T + L +  +PEE V D + 
Sbjct: 21  MAARSMFAGASAPEATAAVQEPQGPKVLVAQRGLPVGTIITADALGFQMWPEELVQDAYF 80

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISS 140
             +   + + +L G +VR P+  G+P+    LV  G+ G L++ L  G RA T+ +S ++
Sbjct: 81  --IEGESDITQLLGTVVRHPVTAGEPLTQGTLVSPGDRGFLAAALGPGMRAITVPVSANT 138

Query: 141 AVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDER------VLV 191
            V G + P D VD+++ +++   +        +L N+RV+A D   +          V  
Sbjct: 139 GVAGFVFPGDRVDLMLTQAVKGEETDLKATETILRNLRVLATDQTTEQTTNEAGKTVVRA 198

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS-----SSEDSDVWDVQEEGKEI 246
             T TLE+TP  A+ +  AQ++  LSL LRSIAD         +S D  + D     +E 
Sbjct: 199 FRTVTLEVTPKIAEKVAVAQTLGTLSLALRSIADNQAELERAIASGDVKIPDGASPEEEE 258

Query: 247 QIIKAGVIVNKDG 259
           +II+A +    DG
Sbjct: 259 RIIQAAMNRPNDG 271


>gi|170734869|ref|YP_001773983.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
 gi|169820907|gb|ACA95488.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
          Length = 279

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 23/263 (8%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R LM +VV+ V  L A + A R +          +  + +   +V ++  DL +G 
Sbjct: 1   MKNSRALMMLVVAMVAGLAAVVFASRWL----------VQTSTSSVTSVAVASTDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            + PN +  V++P  +V  G   D       + L+G +VR  + +G+P+   KL   G  
Sbjct: 51  PLGPNQIHMVSWPAGSVPTGAFTDT------KALEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    ++  
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTGG 224

Query: 234 SDVWDVQEEGKEIQIIKAGVIVN 256
           +    +  +    +   A V   
Sbjct: 225 ATKLTLLGKEPVPEAAPAPVHAR 247


>gi|224824212|ref|ZP_03697320.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002]
 gi|224603631|gb|EEG09806.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002]
          Length = 282

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 24/234 (10%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            IVVS +  LVA ++A + ++       +           V+++  D+ +G  ++P +L 
Sbjct: 1   MIVVSVIIGLVAVVMASQWINKQTNVAAQ----------KVVVASMDIDLGSKLSPEMLR 50

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126
            V +P  ++ +G I D       + LDG +++  + +G+ I   KL   G  GGLS+++ 
Sbjct: 51  SVDWPSGSIPEGAILDP------KALDGRVLKTSVNRGEAILESKLAPVGTKGGLSAVVM 104

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAID 180
           +GKRA T+ ++    V G   P ++VD+++  +   +K          +VL +I V+A+ 
Sbjct: 105 EGKRAMTVRVNDVVGVAGFALPGNYVDILVNTTDDAKKGQNNDASISKIVLEHILVLAVA 164

Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
                D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D  P  +  
Sbjct: 165 QEASRDDTKPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDPKPVQTAG 218


>gi|167584956|ref|ZP_02377344.1| Flp pilus assembly CpaB [Burkholderia ubonensis Bu]
          Length = 280

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK TR + +    + A+VAG+ A+   S   VQT             V ++  DL +G  
Sbjct: 1   MKNTRAITM---LIIAMVAGLAAVAFASRWLVQTSTSA------VTQVAVATTDLNLGEP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P  +  +++P  +V  G   D       + L+G +VR  + +G+P+   KL   G  G
Sbjct: 52  IGPAQIRTISWPTGSVPPGAFTDT------KSLEGRVVRTSLARGEPVLEAKLAPLGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175
           GLS+++  G RA T+ ++    V G   P ++VDV++          ++    +VL +I 
Sbjct: 106 GLSAVIGAGNRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPGKTDNQQSISKIVLEHIL 165

Query: 176 VIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+   +  D+ +  V +  TLE++P QA+ L  A+SV  LSLVLR+  D    +++ +
Sbjct: 166 VLAVAQQVSRDDTQPKVVNAVTLEVSPEQAEKLDVARSVGTLSLVLRNQVDKQTLNTDGA 225


>gi|87199102|ref|YP_496359.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
 gi|87134783|gb|ABD25525.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
          Length = 342

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 129/251 (51%), Gaps = 14/251 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +LM +V + + A+     A  L + +     E   + P     VL+++  L VG +
Sbjct: 1   MDKRKLMLLVGALIVAIGTAFAARSLFAGNSTPQAEAAAKVPTGP-KVLVAQRALPVGTI 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T + + + A+P++ V D +   V     MQ+L G +VR PI  G+P+    LV  G+ G
Sbjct: 60  ITADSINFQAWPKDMVQDAYF--VEGEADMQKLLGTVVRNPITAGEPVTKGNLVAPGDRG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSNI 174
            L++ L  G RA T+ +S  + V G + P DH+D+V+ +++              +L N+
Sbjct: 118 FLAAALGAGMRAVTIPVSARTGVAGFVFPGDHIDLVLTQTVKGTGEGMALKASETILKNL 177

Query: 175 RVIAIDHNIDSDE-----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           RV+A D + + ++     RV   ST TLE+TP  A+ +  AQ++  +SL LRS+AD +  
Sbjct: 178 RVLATDQSTEQEQVEGKTRVRTFSTVTLEVTPKIAEKIAVAQTIGTISLSLRSLADNSAE 237

Query: 230 SSEDSDVWDVQ 240
             +     DV+
Sbjct: 238 LEQAIAAGDVK 248


>gi|91788410|ref|YP_549362.1| Flp pilus assembly CpaB [Polaromonas sp. JS666]
 gi|91697635|gb|ABE44464.1| Flp pilus assembly CpaB [Polaromonas sp. JS666]
          Length = 284

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 26/244 (10%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M+ TR L+ I V+ V A  A I+A R +S           +  A    V ++  D+++G 
Sbjct: 1   MRNTRALVMIAVAVVLAFGAVIVAARWIS----------AQASADTSKVAVAAVDISLGA 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            ++P ++  V +P   +  G I D       ++L+  + R  I +G+P+   KL   G  
Sbjct: 51  RLSPEMVRMVDWPASAMPPGAITDA------KQLETRVTRTSIQRGEPVMEGKLAPPGTQ 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-------RSLSERKPTVTVVL 171
           GGLS+++ +GKRA T+ ++    V G   P + VD+++            + +    +VL
Sbjct: 105 GGLSAVVAEGKRAMTVRVNDVVGVAGFALPGNFVDILVNTQDEPGKGGAGKDQTISKIVL 164

Query: 172 SNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
             I V+AI      DE +  V +  TLELTP QA+ L  A+SV  LSLVLR+  D NP +
Sbjct: 165 ERILVLAIAQESSRDETKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPVN 224

Query: 231 SEDS 234
           ++ +
Sbjct: 225 TKGA 228


>gi|107028249|ref|YP_625344.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116687160|ref|YP_840407.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
 gi|105897413|gb|ABF80371.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116652875|gb|ABK13514.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
          Length = 279

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 23/258 (8%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R LM +VV+ V  L A + A R +          +  + +   +V ++  DL +G 
Sbjct: 1   MKNSRALMMLVVAMVAGLAAVVFASRWL----------VQTSTSSVTSVAVATTDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            + PN +  V++P  +V  G   D       + L+G +VR  + +G+P+   KL   G  
Sbjct: 51  PLGPNQIHMVSWPAGSVPTGAFTDT------KTLEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    ++  
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTGG 224

Query: 234 SDVWDVQEEGKEIQIIKA 251
           +    +  +    +   A
Sbjct: 225 ATKLTLLGKEPVPEAAPA 242


>gi|187919323|ref|YP_001888354.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
 gi|187717761|gb|ACD18984.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
          Length = 269

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 120/248 (48%), Gaps = 25/248 (10%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            ++++ +  L A + A R +          ++++      V+++  D+ +G  + P+ L+
Sbjct: 1   MLLIATLAGLTAVVFASRWM----------VSQSSNATTRVVVAAADINLGQRIGPDYLK 50

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126
              +P  +V  G   D+      Q+LDG +++  +L+G+PI   KL   G  GGLS+++ 
Sbjct: 51  LTDWPSNSVPPGSYSDI------QKLDGRVLKESLLRGEPILDAKLTPVGTLGGLSAVIG 104

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAI 179
           +GKRA T+ ++    V G   P ++VD+++      R P          +VL  I V+A+
Sbjct: 105 EGKRAITVRVNDVIGVAGFALPGNYVDIIVNTQKDGRDPGATRDQNISKIVLEKILVLAV 164

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
              +  DE +  V    TLE+ P QA+ +  A+S+  LSLVLR+  D     +  +    
Sbjct: 165 AQEVGRDETKPKVVDAVTLEVLPEQAEKIDLARSIGTLSLVLRNQIDPKAIDTAGATKAS 224

Query: 239 VQEEGKEI 246
           + +    +
Sbjct: 225 LLQTPVAV 232


>gi|78060315|ref|YP_366890.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
 gi|77964865|gb|ABB06246.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
          Length = 279

 Score =  202 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 21/240 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R + +    V A+VAG+ A+   S   VQT        +    V ++  DL +G  
Sbjct: 1   MKNSRAVMM---LVVAMVAGLAAVVFASHWLVQTST------SSVTPVAVATTDLNLGEP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + PN +  V++P  +V  G   D         L+G +VR  + +G+P+   KL   G  G
Sbjct: 52  LGPNQIHMVSWPSGSVPTGAFTDTKG------LEGRVVRTSLSRGEPVIESKLAPVGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175
           GLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I 
Sbjct: 106 GLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHIL 165

Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ +
Sbjct: 166 VLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLNTDGA 225


>gi|326388865|ref|ZP_08210447.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206465|gb|EGD57300.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370]
          Length = 347

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 19/269 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ +V + +FA+   + A  L++      + +          VL+++  L VG +
Sbjct: 1   MDRKKLILLVGALIFAIATSLAARALLTGGSTP-QAIAAAKVLDGPKVLVAQRALPVGTI 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T + + + A+P++ V D +   +     MQ+L G +VR PI  G PI    LV  G+ G
Sbjct: 60  ITADAVSYQAWPKDLVQDAYF--LQDKTDMQKLLGTVVRNPITAGQPITTGSLVAPGDRG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSNI 174
            L++ L  G RA T+ +S  + V G + P DHVD+++ +S+              +L N+
Sbjct: 118 FLAAALGPGMRAVTIPVSTRTGVAGFVFPGDHVDLLLTQSVKGDGESQALKATETILKNL 177

Query: 175 RVIAIDHNIDSD-----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL--- 226
           RV+A D + D +      RV   S  T+E TP  A+ L  A+S+  +SL LRSIAD    
Sbjct: 178 RVLATDQSTDQETVDGHTRVKGFSLVTVEATPKIAEELAVAESIGTISLSLRSIADNSSE 237

Query: 227 --NPSSSEDSDVWDVQEEGKEIQIIKAGV 253
                +S          + +E ++IKA +
Sbjct: 238 LEQAVASGQVKFPAGASKAEEDRLIKAAM 266


>gi|300021853|ref|YP_003754464.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523674|gb|ADJ22143.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 267

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 136/269 (50%), Gaps = 14/269 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +L+G  V+   A +A  IA   ++P       V  E       VL++  D++VG +
Sbjct: 1   MKRAQLVGFSVAFAAAALAYYIASAFMTPPK----TVTVEKQVDSTEVLVAATDISVGQI 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQ-PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           V      W  +P+  V   ++   +  P    E  G + R  IL G+P+  +KL+  G G
Sbjct: 57  VNEGNFHWATWPKSAVTADYVTKANSGPGKAHEFTGAVARSAILSGEPVTTQKLIKAGQG 116

Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNI 174
           G L+++LP+G RA +  I   +A G +I PNDHVDV+++R       + +     +  N+
Sbjct: 117 GVLAAILPQGMRAISTKIKAETAAGSLILPNDHVDVILIRHVRSRSGQEETVADTLFRNV 176

Query: 175 RVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           RV+AI   I++ +      +  STATLEL P QA+ +  A S+ +++L LRS+ADL+   
Sbjct: 177 RVMAIGQQIETKDGKKSADISASTATLELMPKQAEMMALANSMGEITLSLRSVADLSSDP 236

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259
               ++   + +   ++I++ G      G
Sbjct: 237 ERAGNLDLNKPQNNSVRIVRYGAKSRVYG 265


>gi|83859356|ref|ZP_00952877.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633]
 gi|83852803|gb|EAP90656.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633]
          Length = 268

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                + + VL++  D++    V+     W  +P E V   FI    +P+AM EL G + 
Sbjct: 40  QAAAPEVVQVLVAARDMSPSSRVSGADFRWTNWPVEAVIPAFITREARPDAMDELSGAVT 99

Query: 99  RVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           R   + G+PI   KLV  G  G +++++  G RA  + IS  S  GG I PND VDV++ 
Sbjct: 100 RAAFVDGEPILPGKLVQPGEAGFMAAVIDPGMRAVAVPISAESGAGGFILPNDRVDVLVT 159

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
            S  +      V++ N+RV+AID   +D  E V++GSTATLELTP Q  ++    +   +
Sbjct: 160 TSARDMGYISEVLVENVRVLAIDQTYVDDGEGVVLGSTATLELTPQQTSSVALGVAEGDI 219

Query: 217 SLVLRSIADL--NPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
            L LRS+AD    P     +D    +  G+E++II+ G    
Sbjct: 220 VLALRSVADREGGPRLPNGADDEAGERRGREVRIIRYGAEQR 261


>gi|167624206|ref|YP_001674500.1| SAF domain-containing protein [Shewanella halifaxensis HAW-EB4]
 gi|167354228|gb|ABZ76841.1| SAF domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 270

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 16/250 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S VF + A  +A   +  +        TE      NV+    ++ +G +
Sbjct: 1   MNNKTVLFVILSLVFGVTAVYLAQSWLKSN------TQTETVGTTSNVITMVTEVPLGTI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L     PE  V  G I D+       E +G +V+  + +G+ +R E+L  +G G 
Sbjct: 55  IERKHLALTPVPENLVPKGAITDI------TEAEGQVVKHRLYQGEVLRKERLTPKGEGS 108

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VD++ +   S  K    +VLSN++++AI
Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSSGLK--TDIVLSNVKILAI 166

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE + ++    TLEL+  QA+ L+ A+S   L L LR+  D       + D  D
Sbjct: 167 DQKASNDENKPVLVRAVTLELSLEQAEVLMIAKSRGSLQLALRNPNDTAVIELAEIDEPD 226

Query: 239 VQEEGKEIQI 248
             E      I
Sbjct: 227 EDEVEISENI 236


>gi|149186254|ref|ZP_01864568.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21]
 gi|148830285|gb|EDL48722.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21]
          Length = 361

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 16/274 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ +V + + A+   ++A  + +       +      ++   VL+++  L  G +
Sbjct: 1   MDRKKLVLLVGALIVAIGTALVARSMFAGASAPQAQAAAVVESQGPKVLVAQRALPTGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T + + +  +PEE V D +  D      + +L G +VR P+  G+P+    LV  G+ G
Sbjct: 61  ITADAIGYQLWPEELVQDAYFLDGEA--DVSKLIGTVVRHPVTAGEPVTQGSLVSPGDRG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176
            L++ L  G RA T+ +   S V G + P D VD+V+ +++S           +L N+RV
Sbjct: 119 FLAAALTPGMRAITVPVDAKSGVAGFVFPGDRVDMVLTQAVSGEGQALKASETILRNLRV 178

Query: 177 IAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS-- 229
           +A D       +D   +V    T TLE+TP  A+ +  AQ++  LSL LR +AD      
Sbjct: 179 LATDQSTTQTTVDGKTQVRAFRTVTLEVTPTIAEKVAVAQTLGTLSLALRPLADSQGELE 238

Query: 230 ---SSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260
              +S D  + +     +E ++++       DG+
Sbjct: 239 RAIASGDLVIPEDATPEEEERMLREVAGRPDDGK 272


>gi|115361032|ref|YP_778169.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
 gi|115286360|gb|ABI91835.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
          Length = 281

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 23/241 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R LM ++++ V  L A + A R +      +   +               DL +G 
Sbjct: 1   MKNSRALMMLIIAMVAGLAAVVFASRWLMHTSSSSVTSVAVA----------TTDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL   G  
Sbjct: 51  PLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224

Query: 234 S 234
           +
Sbjct: 225 A 225


>gi|170701162|ref|ZP_02892135.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
 gi|170133943|gb|EDT02298.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
          Length = 281

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 23/241 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R LM ++++ V  L A + A R +      +   +               DL +G 
Sbjct: 1   MKNSRALMMLIIAMVAGLAAVVFASRWLMNTSSSSVTSVAVA----------TTDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL   G  
Sbjct: 51  PLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224

Query: 234 S 234
           +
Sbjct: 225 A 225


>gi|253996770|ref|YP_003048834.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8]
 gi|253983449|gb|ACT48307.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8]
          Length = 298

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 24/243 (9%)

Query: 1   MK-LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK     + IVVS    L A ++A R +S                   V+++  ++ +G 
Sbjct: 1   MKNPRAFLMIVVSVGIGLGAVVLASRWISQQAATVASS---------KVVVAAINIDLGT 51

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118
            +TP +L+   +P  +V  G  DD+      + LD  +V+  +L+G+P+   KL   G  
Sbjct: 52  PLTPQMLKVADWPRGSVPVGATDDI------KTLDARVVKTSLLQGEPVLESKLAPLGAT 105

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLS 172
           GGLS+++ +G RA T+ ++    V G   P ++VD+V+             K    +VL 
Sbjct: 106 GGLSAVIAEGNRAMTVRVNDVVGVAGFALPGNYVDIVVNTEDESVKAENVNKSISKIVLE 165

Query: 173 NIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +I V+A+    + DE +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D N  ++
Sbjct: 166 HIMVLAVAQEQNRDETKPKVVNAVTLEVTPAQAEKLDLARSVGTLSLVLRNQIDKNVVTT 225

Query: 232 EDS 234
           E S
Sbjct: 226 EGS 228


>gi|56477529|ref|YP_159118.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1]
 gi|56313572|emb|CAI08217.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1]
          Length = 283

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 119/264 (45%), Gaps = 30/264 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  ++V+ +  L A ++  R +            ++      + ++  +L +G  
Sbjct: 1   MKAKGMGFLLVAMLAGLAAVVLGTRWLQ----------AKSAGDGNRIAVAAVELQLGSR 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P  +  V +P  ++  G   D      + +LDG +    I  G+P+   +L   G  G
Sbjct: 51  IAPEAIRLVEWPSGSIPAGAFHD------LAKLDGRVAITGIQPGEPVLESRLAPEGTKG 104

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSN 173
           GLS+++P+GKRA T+ ++    V G   P ++VD+++    +        +    +VL  
Sbjct: 105 GLSAVVPEGKRAITVRVNDVIGVAGFTLPGNYVDIMVNTENTGANRNSADQMISKIVLER 164

Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           I V+A+    + DE +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D N + + 
Sbjct: 165 ILVLAVAQEANRDETKPKVVNAVTLEVTPEQAERLDLARSVGNLSLVLRNQIDSNTTDTA 224

Query: 233 DSD------VWDVQEEGKEIQIIK 250
                      D        Q +K
Sbjct: 225 GITKAMLLRTPDDAPVTPAPQAVK 248


>gi|323137424|ref|ZP_08072502.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242]
 gi|322397411|gb|EFX99934.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242]
          Length = 267

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 11/245 (4%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
             M   S    Q   V+   P     VL++  DL  G  +    + WV +P+ +V  G +
Sbjct: 20  FMMMNSSSPPPQAPVVVAPPPMNTEQVLVATRDLTYGTEIVDQDMAWVEWPKTSVPVGSL 79

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISS 140
                PNA +E+    VR+PI  G+PIR ++L+     GL S++L  GKRA  +D+++++
Sbjct: 80  TKTESPNAQEEVKSSYVRIPIAGGEPIRKDRLIKGVTAGLMSTMLSPGKRAIAIDVTLNN 139

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAIDHNIDSD--ERVLV 191
             GG I PND VDV+     +E             VVLSN+RV+A+   I+    E V+ 
Sbjct: 140 TAGGFILPNDRVDVLRTYRDTEATKDLGHEVYNSEVVLSNVRVLAMGQTIEKKGAEPVVT 199

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           GSTATLEL P QA+ +V AQ   +L L LR I D   +    ++          + +++ 
Sbjct: 200 GSTATLELDPRQAELVVLAQRTGQLVLSLRPITDA-INKDAAAEAPADPGSDDSLTVVRH 258

Query: 252 GVIVN 256
           GV  N
Sbjct: 259 GVAAN 263


>gi|82703478|ref|YP_413044.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196]
 gi|82411543|gb|ABB75652.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196]
          Length = 261

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 18/234 (7%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            IV+S +  L A ++A R +          I         V+++  D+ VG  +TP++L+
Sbjct: 1   MIVISLLLGLAAVVVAGRWI----------IDRASVDAATVIVASRDIDVGTRLTPDMLQ 50

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126
              +P   V +G   D         LD  +V+V +++G+P+   KL  +G  GGLS ++ 
Sbjct: 51  PSDWPRATVPEGSFQDAKL------LDTRVVKVNLVRGEPLLEAKLAPQGAAGGLSGVIA 104

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
           +GKRA T+ ++    + G   P ++VD+++       KP   +VL  I V+A+  ++  D
Sbjct: 105 EGKRAITVKVNEIVGLAGFALPGNNVDILVNAKDENDKPISKIVLERILVLAVGQDLGRD 164

Query: 187 E-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
           E +    +  TLE+TP +A+ L  A+S+  LSLVLR+  D +P ++      D+
Sbjct: 165 ETKPKAVTAVTLEVTPQEAEKLDLARSIGTLSLVLRNQIDKSPGTTAGVRTRDL 218


>gi|73542328|ref|YP_296848.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
 gi|72119741|gb|AAZ62004.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
          Length = 280

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 129/259 (49%), Gaps = 26/259 (10%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK TR + +++  +   + A + A R +          + ++      V+++  DL +G 
Sbjct: 1   MKNTRAILMLLIALLAGVAAVVSASRWL----------MEQSSNSVKQVVVAANDLNLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            +  + L  V +P  +V  G  +D      ++ L+G +VR  + +G+P+   KL   G  
Sbjct: 51  PLNGSQLRLVNWPTASVPPGAFED------LKLLEGRVVRTSLQRGEPVLDAKLAPIGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNI 174
           GGLS+++  GKRA T+ ++    V G   P ++VDV++  +      +      +VL  I
Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKTAQNGSISKIVLEKI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS---IADLNPSS 230
            V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+   +AD+N   
Sbjct: 165 LVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDVADINTGG 224

Query: 231 SEDSDVWDVQEEGKEIQII 249
           +    +     E  +++++
Sbjct: 225 ATKGTLLGKAPEAPQVKVV 243


>gi|148557762|ref|YP_001265344.1| SAF domain-containing protein [Sphingomonas wittichii RW1]
 gi|148502952|gb|ABQ71206.1| SAF domain [Sphingomonas wittichii RW1]
          Length = 332

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 14/252 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ ++++ V A ++ ++A  +   +                 V ++   L VG +
Sbjct: 1   MDARKLLLLIMALVMAGISAVVARSMFGGNSEAEAAPAAAPQPSGPEVAVAVRPLPVGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P    +  +P E V   +   +   + +  L+G +VR  I  G P+    LV  G+ G
Sbjct: 61  IGPESFRYQRWPAELVSKTYF--IKGESDLAALNGSVVRYAITAGAPVTQGALVKPGDRG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSNI 174
            L++ L  G RA T+ +S  S V G + P D VD+++ + +              ++ NI
Sbjct: 119 FLAAALGPGMRAVTISVSAQSGVAGFVFPGDRVDLMLTQEVPGGGDGPPLKAAETIIRNI 178

Query: 175 RVIAIDH----NIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           RV+A D      +D + + +V +T   TLE TP  A+ +  AQ++ +LSL LRSIAD   
Sbjct: 179 RVLAADQRTDKTVDEEGKTVVANTSNVTLEATPKIAEKIAVAQTIGQLSLALRSIADDRA 238

Query: 229 SSSEDSDVWDVQ 240
              E     D++
Sbjct: 239 ELEERIANGDIK 250


>gi|172065272|ref|YP_001815984.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
 gi|171997514|gb|ACB68431.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
          Length = 281

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 23/241 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R +M ++++ V  L A + A R +      +   +               DL +G 
Sbjct: 1   MKNSRAVMMLIIAMVAGLAAVVFASRWLMNTSSSSVTSVAVA----------TTDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL   G  
Sbjct: 51  PLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224

Query: 234 S 234
           +
Sbjct: 225 A 225


>gi|218710407|ref|YP_002418028.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32]
 gi|218323426|emb|CAV19603.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32]
          Length = 279

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K    +  ++S VF L A   A + +     Q +  +     +   V+++  ++  G ++
Sbjct: 33  KSQVFLLFLLSVVFGLAAVFFAKQWM---EDQVQPTVEVEAVERHPVVVASQEIEAGTII 89

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120
               L       + + +    D        EL G +V   I  G+ +   +    G G  
Sbjct: 90  EEQFLATKLMEVDWINENNFSDAS------ELVGKVVANTIYAGEVLHKMRFTIPGEGST 143

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L++L+P+ KRA T+ +     V G + P + VD++   S S+       VL +I+V+A+D
Sbjct: 144 LAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILSTVSYSKNSAATRTVLKDIKVLAVD 203

Query: 181 HNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
               ++E   ++    TLE++P  A+ L+ A+S   + L LR+  ++ 
Sbjct: 204 QTAKTNENSPIIVRAVTLEVSPKDAEKLLTAKSKGSIQLTLRNPHEVE 251


>gi|292491518|ref|YP_003526957.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4]
 gi|291580113|gb|ADE14570.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4]
          Length = 265

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 114/261 (43%), Gaps = 19/261 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   LM   ++ V    A  +A + +          +     +   V+++  ++  G  +
Sbjct: 3   KRKSLMLFFIAIVLGTGATWMANQWL--QDRMQPGPVEVVAPETAPVVVAALEIPFGQKI 60

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
               L+ +++P +N+ +G   +         ++G +    I  G+PI  ++ V++ G   
Sbjct: 61  ETMHLKVISWPADNMPEGIFHETS------AVEGRVASQKIYPGEPIMKDRAVEQLGGST 114

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIA 178
           LS+++P+ KRA T+ ++    V G + P + VDV+  R    S+ K  +  +L N++V+A
Sbjct: 115 LSAIVPRDKRAVTVRVNDVIGVAGFLLPGNQVDVLSSRKIDRSQNKVQIETILQNLKVLA 174

Query: 179 IDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP-SSSEDSDV 236
           +D     D+   LV    TLE  P QA+ L  A     + LVLR+  D+      E   V
Sbjct: 175 VDQTASQDKNQPLVVRAVTLEADPKQAEKLFKATEEGTIQLVLRNPQDVAVIKDPEPVKV 234

Query: 237 WDV------QEEGKEIQIIKA 251
                    Q     + +I+ 
Sbjct: 235 AKKTYSKAPQPISDSVTVIRG 255


>gi|218671060|ref|ZP_03520731.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56]
          Length = 214

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 133/209 (63%), Gaps = 6/209 (2%)

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  +  + + W+A+P++ V  GFI +  +P+A+++L G +VR+PI +G+PIR EK+ D  
Sbjct: 1   GARLGDDTVHWMAWPKDGVVQGFITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSS 60

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRV 176
           +  LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV
Sbjct: 61  SRILSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRV 120

Query: 177 IAIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE 232
           +AID  I   D   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     + 
Sbjct: 121 LAIDQQIQEQDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTS 180

Query: 233 DSDVWDVQEEGKE-IQIIKAGVIVNKDGE 260
            +D     + G   IQ+IK+G IV   GE
Sbjct: 181 AADYLLSGDNGSAIIQVIKSGSIVTDAGE 209


>gi|323529414|ref|YP_004231566.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
 gi|323386416|gb|ADX58506.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
          Length = 278

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 14/210 (6%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  ++++G  +  N++  V +P  +V  G   D       + 
Sbjct: 24  ASRWLLQTSSSAVTPVAVATAEVSLGQPLNANMIRTVNWPTASVPPGAFKDP------KA 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           LDG +VR  +  G+P+   KL  +G  GGLS+++ +GKRA T+ ++    V G   P ++
Sbjct: 78  LDGRVVRTSLEPGEPVIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE------RKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204
           VDV++     E      ++    +VL  I V+A+   +  D+ +  V +  TLE+TP QA
Sbjct: 138 VDVIVNTQEPESKTADPQQSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQA 197

Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           + L  A+SV  LSLVLR+  D  P  +  +
Sbjct: 198 EKLDLARSVGSLSLVLRNQIDDRPLPTGGA 227


>gi|264678239|ref|YP_003278146.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2]
 gi|262208752|gb|ACY32850.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2]
          Length = 281

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 14/195 (7%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  D+ +G  + PN+L  V +P  ++ DG   D      MQ+L   +V+V +L+G+
Sbjct: 38  KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91

Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159
            +   KL   G  GGL++++  GKRA T+ ++    V G   P ++VDVV+         
Sbjct: 92  AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGK 151

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
             E +     VL N+ V+A+    D DE +  V S  TLEL+P  A+ L  A+SV  LSL
Sbjct: 152 TEESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSL 211

Query: 219 VLRSIADLNPSSSED 233
           VLR+  D +P+S+  
Sbjct: 212 VLRNQIDKDPTSTAG 226


>gi|302381757|ref|YP_003817580.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192385|gb|ADK99956.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC
           15264]
          Length = 310

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 126/303 (41%), Gaps = 50/303 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGII--AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           MK  R+  I ++ V A+    +  AM   S                   VL++  DLA G
Sbjct: 1   MKPARIAVICIAAVSAIGLAFVVRAMGSPSGEPTAVATAAPAPTRPMAKVLVAARDLAPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------------- 87
             +    LEW  +P + V   FI D   P                               
Sbjct: 61  QRLVEADLEWKDWPVDEVNPAFITDGSVPVPAAAAPEGEAAPATTDTTAESAVARVTRAA 120

Query: 88  ------NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISS 140
                  A  +  G +VR PIL G+PI   K+V  G+ G +++ L  G RA  + +S+ S
Sbjct: 121 NDLTTGGAKADYFGSVVREPILAGEPIVGRKIVRAGDSGYMAAYLEPGMRAMAIGVSVES 180

Query: 141 AVGGMIKPNDHVDVVMVR--------SLSERKPTVTVVLSNIRVIAIDH--NIDSDERVL 190
           A GG I P D VDV++               K    +V+ N++V+AID       D++ +
Sbjct: 181 AAGGFILPGDRVDVIVTVEQQAGNDDDAGRAKFASRIVMQNVKVLAIDQSTRAGDDQQAV 240

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           VG+TATLE+ P  A+ +  A++   LSLVLRS AD +  S   S      E    I++ +
Sbjct: 241 VGATATLEVAPQDAEVVALAKAAGTLSLVLRSYADTSGPSGRVSMPPRASERSTAIRVFR 300

Query: 251 AGV 253
            G 
Sbjct: 301 GGE 303


>gi|89899602|ref|YP_522073.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118]
 gi|89344339|gb|ABD68542.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118]
          Length = 286

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 25/242 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + ++ +  L A  +A R +                +   + ++  D+ +G  
Sbjct: 1   MRSRGILMLFIAVIAGLAAVFLATRWMQGQG-----------GEGGRIAVANTDIELGGR 49

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           ++P ++    +P  +   G   +        +L+G +V V + +G+P+   +L   G  G
Sbjct: 50  ISPEMIRMADWPLGSTPTGAYKEAA------KLEGRVVLVSMQRGEPLIEARLAPIGTKG 103

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSN 173
           GLS+++P+GKRA T+ ++    V G   P   VDV++       +          +VL  
Sbjct: 104 GLSAVVPQGKRAMTVRVNDVVGVAGFALPGTFVDVMVNTQDEGGQRNDRDRSVSKIVLER 163

Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           I V+A+    D D  +  V +  TLE+TP  A+ L  A+SV  LSLVLR+  D    ++ 
Sbjct: 164 ILVLAVAQEADRDSTKPRVVNAVTLEVTPRDAEMLDLARSVGTLSLVLRNQTDPKGVAAT 223

Query: 233 DS 234
             
Sbjct: 224 GG 225


>gi|85707703|ref|ZP_01038769.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1]
 gi|85689237|gb|EAQ29240.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1]
          Length = 365

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 135/273 (49%), Gaps = 19/273 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ ++ + V A+ +  +A  + +     T +   E       VL++   L  G +
Sbjct: 1   MDRKKLVLLLGALVVAIGSAFLARSMFAGDPAPTAQAAPEPTGP--KVLVANRALPAGTI 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T + + +  +PEE V D +   +   + M +L G +VR P+  G+P+    LV  G+ G
Sbjct: 59  ITADAMGYQMWPEELVQDAYF--IEGESDMSQLLGTVVRFPVTAGEPVTQGSLVSPGDRG 116

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176
            L++ L  G RA T+ +S  + V G + P D VDVV+ +++S           VL N+RV
Sbjct: 117 FLAAALGPGMRAVTVPVSAKTGVAGFVFPGDRVDVVLTQTVSGEGRPLNAAETVLRNLRV 176

Query: 177 IAIDHNIDS---DERVLVG---STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS- 229
           +A D   +    DE   V     T TLE+TP  A+ +  AQ++ +L+LVLRSIAD     
Sbjct: 177 LATDQTTEQVTNDEGKTVVRAFRTVTLEVTPQIAEKVAVAQTIGQLTLVLRSIADNQAEL 236

Query: 230 ----SSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258
               +S D ++ D     +E +I++  +    D
Sbjct: 237 ERAIASGDLEIPDDATPEEEERILRTAMGQPVD 269


>gi|16263309|ref|NP_436102.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|14523988|gb|AAK65514.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021]
          Length = 263

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 18/256 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ ++++      A  +A   +     +  EV          VL++  +L  G V+ 
Sbjct: 1   MIRIVILLLALASGGAASWLA---LGTGDQRAVEVAEVQETPSQEVLVAAAELKRGAVIE 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            N L W  + E  +   FI    +P+A   L G L     + G+PIR +KL   G G LS
Sbjct: 58  ENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSLALSGFVAGEPIRDDKLAQGGTGYLS 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-----SLSERKPTVTVVLSNIRVI 177
           SLLP GKRA  + ++  S  GG I PNDHVDV+        S    K     +LSNIRV+
Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDASGDAGKVVSRAILSNIRVL 176

Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D  +    D   ++G TATLE+ P Q  A+ AA++   +SL LR+I D + +S  ++ 
Sbjct: 177 AVDQTVSQASDGASVIGKTATLEVDPEQISAVAAAEASGTVSLALRAITDNHEASVVEA- 235

Query: 236 VWDVQEEGKEIQIIKA 251
                 EG    +++ 
Sbjct: 236 ------EGTRPGVVRF 245


>gi|167924331|ref|ZP_02511422.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           BCC215]
          Length = 281

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 21/240 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R   ++   + A +A +      S   VQT             V ++  D+++G  
Sbjct: 1   MKNSRAFTMLAIAILAGLAAV---AFASRWLVQTSSSA------VTPVAVAATDVSLGEP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + PN L  V +P  +V  G   D+        L+G +VR  + +G+P+   KL   G  G
Sbjct: 52  LGPNQLRIVNWPTASVPPGAFTDLKP------LEGRVVRTSLARGEPVLGTKLAPVGTKG 105

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIR 175
           GLS+++  G RA T+ ++    V G   P ++VDV++          ++    +VL  I 
Sbjct: 106 GLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADPQQSISKIVLEKIL 165

Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+   +  D+    V +  TLE++P QA+ L  A+SV  LSLVLR+  D +  S+  +
Sbjct: 166 VLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLRNQIDKDALSTGGA 225


>gi|299532591|ref|ZP_07045980.1| pilus assembly transmembrane protein [Comamonas testosteroni S44]
 gi|298719394|gb|EFI60362.1| pilus assembly transmembrane protein [Comamonas testosteroni S44]
          Length = 281

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 14/208 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  D+ +G  + PN+L  V +P  ++ DG   D      MQ+L   +V+V +L+G+
Sbjct: 38  KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91

Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159
            +   KL   G  GGL++++  GKRA T+ ++    V G   P ++VDVV+         
Sbjct: 92  AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGK 151

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
             E +     VL N+ V+A+    D DE +  V S  TLEL+P  A+ L  A+SV  LSL
Sbjct: 152 TEESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSL 211

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEI 246
           VLR+  D +P+S+       +    + +
Sbjct: 212 VLRNQIDKDPTSTAGITKHQLFGTPEPV 239


>gi|307726374|ref|YP_003909587.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
 gi|307586899|gb|ADN60296.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
          Length = 278

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 14/209 (6%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
           +  ++  + +    V +   ++++G  +  N++  V +P  +V  G   D       + L
Sbjct: 25  SRWLLQTSSSAVTPVAVVTAEVSLGQPLNANMIRTVNWPTASVPPGAFKDP------KAL 78

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           DG +VR  +  G+P+   KL  +G  GGLS+++ +GKRA T+ ++    V G   P ++V
Sbjct: 79  DGRVVRTSLEPGEPVIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYV 138

Query: 153 DVVMVRSLSERK------PTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205
           DV++     E K          +VL  I V+A+   +  D+ +  V +  TLE+TP QA+
Sbjct: 139 DVIVNTQEPEAKTADPQHSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAE 198

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
            L  A+SV  LSLVLR+  D  P  +  +
Sbjct: 199 KLDLARSVGSLSLVLRNQIDDRPLPTGGA 227


>gi|187927688|ref|YP_001898175.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
 gi|187724578|gb|ACD25743.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
          Length = 283

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 126/261 (48%), Gaps = 28/261 (10%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R ++ ++V+ V  + A + A R +S           ++ +    V+++  D+ +G 
Sbjct: 1   MKNARAIVMLIVALVAGIAAVVSASRWLSQ----------QSTSSVKQVVVAASDMDLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            +    L  V++P  ++  G  DD       + L G +VR  + KG+PI   KL   G  
Sbjct: 51  PLGNEQLRTVSWPAGSLPPGTFDDP------KALQGRVVRASLQKGEPILENKLAPIGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV------VLS 172
           GGLS+++ +GKRA T+ ++    V G   P + VDV++  +   +  +         VL 
Sbjct: 105 GGLSAVIAEGKRAITVRVNDVVGVAGFALPGNLVDVIVNTNEDAKSASNNNNSISKIVLE 164

Query: 173 NIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
            I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+  +++
Sbjct: 165 KILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQVDVAATAT 224

Query: 232 EDS---DVWDVQEEGKEIQII 249
             +    +          +++
Sbjct: 225 GGATKGTLLGTPAAEPAPKVV 245


>gi|53723206|ref|YP_112191.1| pilus assembly-related, exported protein [Burkholderia pseudomallei
           K96243]
 gi|76817358|ref|YP_336468.1| pilus assembly transmembrane protein [Burkholderia pseudomallei
           1710b]
 gi|126444606|ref|YP_001064075.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|126455786|ref|YP_001076988.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|167829714|ref|ZP_02461185.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 9]
 gi|167899812|ref|ZP_02487213.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           7894]
 gi|167916475|ref|ZP_02503566.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           112]
 gi|217424287|ref|ZP_03455786.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|226194084|ref|ZP_03789685.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237507313|ref|ZP_04520028.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242313081|ref|ZP_04812098.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254182584|ref|ZP_04889178.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|254187135|ref|ZP_04893650.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254262844|ref|ZP_04953709.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
 gi|254296484|ref|ZP_04963940.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
 gi|52213620|emb|CAH39674.1| putative pilus assembly-related, exported protein [Burkholderia
           pseudomallei K96243]
 gi|76581831|gb|ABA51305.1| pilus assembly transmembrane protein [Burkholderia pseudomallei
           1710b]
 gi|126224097|gb|ABN87602.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|126229554|gb|ABN92967.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|157806446|gb|EDO83616.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
 gi|157934818|gb|EDO90488.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184213119|gb|EDU10162.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|217392752|gb|EEC32775.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|225934029|gb|EEH30015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|234999518|gb|EEP48942.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242136320|gb|EES22723.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254213846|gb|EET03231.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
          Length = 281

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+++G  + PN L  V +P  +V  G   D+        
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  S+  +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225


>gi|77919344|ref|YP_357159.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380]
 gi|77545427|gb|ABA88989.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380]
          Length = 272

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 9/237 (3%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++ + ++ +F ++A I+  R +S   V  E            ++++  D+ +G  +
Sbjct: 3   KYGTIIALALAVIFGVIAVILVNRWLS-SKVSQEATTPRESIAMTEIVVAAADVNIGTRL 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
              +L    +P+ +V  G  +D+      +++ G +    ++ G PI   +L    +G G
Sbjct: 62  DQTLLAMAQWPKASVPKGAFEDI------EQVVGRVSVSKMVTGTPILAAELAAPNSGAG 115

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L +L+  G RA  + ++    VGG I PN  VD++ +   S+R       L  + V+AI 
Sbjct: 116 LVALIKPGMRAMAIKVNEVVGVGGFILPNTFVDIISLDERSKRTKVADTFLHKVEVLAIA 175

Query: 181 HNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
                 + +  V  T TLELTP  A+ LV       + LVLR+  D   +      V
Sbjct: 176 QETFIEEGKPKVVRTVTLELTPEDAEKLVEKTHEGPIQLVLRNPLDEKETPPPPKKV 232


>gi|241662166|ref|YP_002980526.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
 gi|309780761|ref|ZP_07675502.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
 gi|240864193|gb|ACS61854.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
 gi|308920443|gb|EFP66099.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
          Length = 283

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 108/213 (50%), Gaps = 18/213 (8%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
           +  +  ++ +    + ++  D+ +G  ++P  ++ V +P  ++  G I+D H       L
Sbjct: 25  SRWLTQQSGSGITKIAVAATDIDLGQRLSPEAIKLVDWPASSLPPGAINDPH------AL 78

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           DG +VR  + +G+P+   KL   G  GGLS+++ +GKRA T+ ++    V G   P  +V
Sbjct: 79  DGRVVRASLTRGEPVLDSKLTPVGTAGGLSAVIAEGKRAITVRVNDVVGVAGFALPGSYV 138

Query: 153 DVVMVRSLSER----------KPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTP 201
           D+++      R          +    +VL  I V+A+   ++ D+ +  V +  TLE+TP
Sbjct: 139 DIIVNTQQDSREAKPGADRNDQSISKIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTP 198

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
            QA+ +  A+SV  LSLVLR+  D     +  +
Sbjct: 199 EQAEKIDLARSVGNLSLVLRNQVDSQHDVTAGA 231


>gi|254192395|ref|ZP_04898834.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|169649153|gb|EDS81846.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
          Length = 281

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+++G  + PN L  V +P  +V  G   D+        
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  S+  +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKDTLSTGGA 225


>gi|86147468|ref|ZP_01065780.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222]
 gi|85834761|gb|EAQ52907.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222]
          Length = 249

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K    +  ++S VF L A   A + +     Q +  I     +   V+++  ++  G V+
Sbjct: 3   KSQVFLLFLLSVVFGLAAVFFAKQWMDN---QVQPTIEVEEVERHPVVVASQEIEAGTVI 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120
               L       + + +    D +      EL G +V   I  G+ +   +    G G  
Sbjct: 60  EDQYLTTKLMEVDWINENNYSDQN------ELIGKVVANTIYAGEVLHKLRFTVPGEGST 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L++L+P+ KRA T+ +     V G + P + VD++   S  +       VL +I+V+A+D
Sbjct: 114 LAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATRTVLKDIKVLAVD 173

Query: 181 HNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
               + E   ++    TLE+TP  A+ L+ A+S   + L LR+  +++
Sbjct: 174 QTARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRNPHEVD 221


>gi|254418623|ref|ZP_05032347.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3]
 gi|196184800|gb|EDX79776.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3]
          Length = 305

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 123/298 (41%), Gaps = 45/298 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R+  I ++ V AL   ++   + +                   +L++  +L  G  
Sbjct: 1   MKPARIAVICIAAVSALGLALVVRAMGNGEPAAPAAAAPVETRPMAKILVAAKNLEPGKR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDD-------------------------------VHQPNA 89
           +    L W  +P + V   FI D                               +  P A
Sbjct: 61  LAEADLAWKDWPVDEVNPAFITDGSTPIPAKPAPEGAGEKAGAAVERVAEAAGQMAGPGA 120

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKP 148
             +  G +VR PIL G+PI   K+V  G+ G L++ L  G RA  + +++ SA GG I P
Sbjct: 121 KSDYIGSVVREPILAGEPIVGRKIVRAGDSGYLAAYLEPGMRAMAIAVTVESAAGGFILP 180

Query: 149 NDHVDVVMVRS-----------LSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTA 195
            D VDVV+               +  K +   V+ N++V+AID       D + +VG+TA
Sbjct: 181 GDRVDVVLTVQNEGGGSAVEGGGATAKYSSATVMQNVKVLAIDQSTRAGDDAQAVVGATA 240

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253
           TLE+ P  A  L  A+S  +LSL LRS AD    S        V    + +++ + G 
Sbjct: 241 TLEVRPQDAVLLAQAKSEGELSLSLRSYADTAGPSGATRAPRAVASASRSVRVYRGGE 298


>gi|154250688|ref|YP_001411512.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1]
 gi|154154638|gb|ABS61855.1| SAF domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 250

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/259 (32%), Positives = 139/259 (53%), Gaps = 16/259 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R+  +V++ V A +A ++A  LVS +    E+ + E P     VL++  +L +G  
Sbjct: 1   MNPVRIGVLVLALVAAGLAALLARGLVSGNDEPVEQKVVEAP--TTEVLVASSNLQLGQR 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119
           +    L W  +P+ ++   +I     P A++E  G + R  +L G+P+  EKLV   G G
Sbjct: 59  IGGGDLRWQRWPDTSLNGAYITRNQSPAALEEYTGSVARASLLSGEPVTSEKLVTLTGAG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            +S+L+  G RA  + I+  ++ GG I PND VD+V +            +L NIRV+AI
Sbjct: 119 FMSALIEPGMRATAISITPETSAGGFILPNDRVDIVDLAKGQ-------TILRNIRVLAI 171

Query: 180 DHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           D   D    E+V VG TATLELTP Q + +  A++  ++ L LRS+A+ + + SE +   
Sbjct: 172 DQRFDEKAGEQVAVGRTATLELTPAQVEVVSVAEAEGRIGLSLRSMAEQDLAGSEKT--- 228

Query: 238 DVQEEGKEIQIIKAGVIVN 256
            V E G  +++++ G   N
Sbjct: 229 -VAEGGSVVKVVRYGTAQN 246


>gi|167744174|ref|ZP_02416948.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 14]
          Length = 281

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+++G  + PN L  V +P  +V  G   D+        
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  S+  +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225


>gi|220923695|ref|YP_002498997.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
 gi|219948302|gb|ACL58694.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
          Length = 264

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 75/263 (28%), Positives = 126/263 (47%), Gaps = 20/263 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + RL  ++V+    + A  +A+ L          V         +VL+   +LA G  +T
Sbjct: 1   MLRLCLLIVALGAGIAAAWLAVSL--RDQPVAAVVPAPVQPATQDVLVVSTELAQGERLT 58

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              + W  +PE  +   ++    +P A+ E  G  +R  +  G+P++  KL     G L+
Sbjct: 59  KENMRWQPWPESALNSAYVTRSARPAALDEFAGSTLRSRMAPGEPVQDGKLAGLNAGFLA 118

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177
           ++LP GKRA  + IS  +  GG I P+D VDV+       +    R+     +L N+ V+
Sbjct: 119 TVLPSGKRAVAVRISAENTAGGFILPSDRVDVIHTFAPQAQGEGAREHRSRTILKNVPVL 178

Query: 178 AIDHNIDSDERV--------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           AID  +D  ++         ++G TATLEL   QA+ L AA++   LSL LRS AD N  
Sbjct: 179 AIDQTVDEAQKADKGKGKSVVIGKTATLELDSRQAEILAAAEAAGTLSLSLRSAADSNEV 238

Query: 230 SSEDSDVWDVQEEGKEIQIIKAG 252
            +  ++     E  + +++I+ G
Sbjct: 239 PTAATE-----ERIQTVRVIRGG 256


>gi|163738371|ref|ZP_02145786.1| CpaB family protein [Phaeobacter gallaeciensis BS107]
 gi|161388292|gb|EDQ12646.1| CpaB family protein [Phaeobacter gallaeciensis BS107]
          Length = 286

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   ++   + +  E          ++V I+   L  G
Sbjct: 1   MRAVFGLVLIVGVALAGGAVMMAKNYITAYQNELARERASRGENIPLVDVFIANDQLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFI---DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
             +T + +  V +PE  + +G     D +  P    +L   +V   + K + I   K+  
Sbjct: 61  ERLTRDSVRSVRWPENAIPEGAFLTMDALFPPQYPDDL--RVVLRRMEKDEAILAVKVTK 118

Query: 116 RG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTV 169
            G + G++S L KG RA  + + +SS V G ++P DHVDV    SL+++          +
Sbjct: 119 PGEDAGITSRLAKGMRAFAIRVDVSSGVSGFLRPGDHVDVYWTGSLNDQNGGRNGEFTRL 178

Query: 170 VLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           + +NI +IA+D     D +  ++  T T  + P Q  AL  AQS  +LSL L    D   
Sbjct: 179 IQTNIELIAVDQTAGGDLDGAVIARTVTAAVRPEQVAALAQAQSTGRLSLSLVGAGDDTV 238

Query: 229 SSSEDSD 235
           +S  + D
Sbjct: 239 ASVIEVD 245


>gi|303248301|ref|ZP_07334563.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ]
 gi|302490326|gb|EFL50238.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ]
          Length = 304

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 16/251 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  ++++ + A+ AG++ +R +       +    +  AK ++VL++   +  G  
Sbjct: 1   MKSKAIPHMILAVILAVAAGVLTIRWLGSVRGPGQAQRPKVEAKKVDVLVAARAIPKGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +   +L    +  E V  G +       A+ E +G +    I K DPI  +KL+ +G   
Sbjct: 61  LDAAMLRLKPYEAEAVPGGALR------AVAEAEGRVAARDISKDDPITPDKLMAKGVTR 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRV 176
           GGL + +  GKRA T+  +     GG++ P   VDVV+   R   + +    V+L NI V
Sbjct: 115 GGLDAAVAPGKRAVTVKGTKVMGSGGLVTPGSRVDVVVTYSRPGKQEEKVSKVILENIPV 174

Query: 177 IAIDHNIDS----DERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +A    ++     D R  + ST   TL +TP +A+ L  A  +  + + LR   D +   
Sbjct: 175 LATGTELEPRIGKDGREELASTDSFTLMVTPEEAERLALAADLGSMHMALRKPGDDDVVK 234

Query: 231 SEDSDVWDVQE 241
           +  +DV    E
Sbjct: 235 TPGADVAGSLE 245


>gi|300692330|ref|YP_003753325.1| pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299079390|emb|CBJ52061.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum PSI07]
          Length = 284

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 30/248 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGII-AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R+  +++    A +A ++ A R +          + ++ +    V ++  D+ +G 
Sbjct: 1   MKNLRIFSMLLIAAIAGLAAVMFASRWL----------MQQSASGITKVAVASADVELGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            ++P +++ V +P  ++  G + D H       LDG +V+  + +G+P+   KL   G  
Sbjct: 51  RLSPEMVKLVDWPAASLPPGVVTDAH------ALDGRVVKASLTRGEPVLESKLTPVGTA 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----------PTV 167
           GGLS+++  GKRA T+ ++    V G   P  +VDV++     E++              
Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDVIVNTMEDEKQAKAAGNDQKEHSIS 164

Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+ AD 
Sbjct: 165 KIVLEKILVLAVAQEVGRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQADP 224

Query: 227 NPSSSEDS 234
             + +  +
Sbjct: 225 RAADTTGA 232


>gi|157961833|ref|YP_001501867.1| SAF domain-containing protein [Shewanella pealeana ATCC 700345]
 gi|157846833|gb|ABV87332.1| SAF domain protein [Shewanella pealeana ATCC 700345]
          Length = 272

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 16/244 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S VF + A  +A   +  +        TE  A   NV+    ++ +G +
Sbjct: 1   MNNKTVLFVILSLVFGVTAVYLAQNWLKTNTK------TEAVASTSNVMTMVTEVPLGTI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L      +  + +G I D+       E +G +V+  + +G+ +R E++  +G G 
Sbjct: 55  IERKHLALTPVADNLIPEGAITDI------TEAEGFVVKHRLYQGEVLRKERITPKGEGS 108

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VD++ + +    K    +VLSN++++AI
Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFTTPSLK--TDIVLSNVKILAI 166

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE + ++    TLEL+  QA+ L+ A+S   L L LR+  D       D +  +
Sbjct: 167 DQKASNDENKPVLVRAVTLELSLEQAETLMIAKSRGSLQLALRNPNDTAVIELADIEEAN 226

Query: 239 VQEE 242
             E+
Sbjct: 227 KTEK 230


>gi|227818614|ref|YP_002822585.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii
           NGR234]
 gi|36958870|gb|AAQ87295.1| Pilus assembly protein, CpaB [Sinorhizobium fredii NGR234]
 gi|227337613|gb|ACP21832.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii
           NGR234]
          Length = 263

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 15/257 (5%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + RL+ ++ +      A  +A+       V+  EV     +    VL++  +LA G  + 
Sbjct: 1   MIRLVILLFALASGGAASWLALGFADQPTVEAAEV---QQSPSQEVLVAAQELARGTTLE 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L W A+ E  +   FI    +P+A + L G+L +   + G+PIR +KL  RG G LS
Sbjct: 58  EPHLRWQAW-EGEIPPVFISRSARPDAKESLKGLLAQSSFVAGEPIREDKLAQRGAGFLS 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177
           S+LP GKRA  + ++  S  GG I PNDHVDV+        S  + K     VLSNIRV+
Sbjct: 117 SMLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDSSGKDGKVVSRAVLSNIRVL 176

Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D  I    D   +VG TATLE  P Q   + AA++   +SL LR++AD   +   +++
Sbjct: 177 AVDQTISEGADGTSVVGKTATLEADPGQIDIIAAAEASGTVSLALRAVADNLEAPVVETE 236

Query: 236 VWDVQEEGKEIQIIKAG 252
                     ++I+  G
Sbjct: 237 ----GSRPGVVRIVSGG 249


>gi|167841424|ref|ZP_02468108.1| putative pilus assembly protein CpaB [Burkholderia thailandensis
           MSMB43]
          Length = 281

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+ +G  + PN L  V +P  +V  G   D+        
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGTKLAPIGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPDQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  ++  +
Sbjct: 198 LDLARSVGTLSLVLRNQIDKDALNTGGA 225


>gi|227819322|ref|YP_002823293.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227338321|gb|ACP22540.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 352

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 110/258 (42%), Gaps = 8/258 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + ++ ++V+ + AL A       ++    +          +   V ++   +  G  
Sbjct: 21  MRSSTMISLIVALLLALGAVFATRSFLADQQARLVSANAPKAEERTLV-VAAKPMRFGDR 79

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V    L+ + +P E   +G    +       + +       I  G+P+   K+   G   
Sbjct: 80  VRSENLKAIPWPSEERPEGSFQTLEAVLG-DDTEPRYAMEAIDPGEPVLTSKITGTGERA 138

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175
            LS+ L +G +A ++ ++    V G ++P+D VDV++ R      +  +  V V+L  ++
Sbjct: 139 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRQQNNSEQTYVDVLLQGVK 198

Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+D   D   +   +  T T E+T  +A+ L    S+  LSL LR+IA  N   +   
Sbjct: 199 VLAVDQTADERKDEPSIVKTVTFEVTTDEAQRLTLGASIGTLSLTLRNIASSNVEQTRPI 258

Query: 235 DVWDVQEEGKEIQIIKAG 252
            V D+        + K+ 
Sbjct: 259 TVADLGGGLISADLAKSA 276


>gi|148976663|ref|ZP_01813350.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
 gi|145964014|gb|EDK29272.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
          Length = 249

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 17/257 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K    +  ++S VF L A   A + +     Q +  I     +   V+++  ++  G V+
Sbjct: 3   KSQVFLLFLLSVVFGLAAVFFAKQWMD---DQVQPTIEVEKVERHPVVVASQEIEAGTVI 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120
               L       + + +    D       +EL G +V   I  G+ +   +    G G  
Sbjct: 60  EEQFLTTKLMEVDWINENNYSD------KEELIGKVVANTIYAGEVLHKLRFTVPGEGST 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L++L+P+ KRA T+ +     V G + P + VD++   S  +       VL +I+V+A+D
Sbjct: 114 LAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATQTVLKDIKVLAVD 173

Query: 181 HNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
               + E   ++    TLE+TP  A+ L+ A+S   + L LR+  ++      +  V   
Sbjct: 174 QTARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRNPHEV------EKKVVRR 227

Query: 240 QEEGKEIQIIKAGVIVN 256
                 + IIK     N
Sbjct: 228 YVPRPSVTIIKGTETSN 244


>gi|294140773|ref|YP_003556751.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12]
 gi|293327242|dbj|BAJ01973.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12]
          Length = 270

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 20/249 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S  F +VA  +A   +  +        T  P     V+     + +G +
Sbjct: 1   MNNKTMLFVLLSLAFGVVAVFLAQSWLESNSE------TGGPENTSTVITMATLVPLGAI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L+    P+  + +  I         +E +G++V+  +  G+ +R E+++ +G G 
Sbjct: 55  LERKHLKLTPMPKSVIPETAIKT------FEEAEGMVVKHNLYTGEILRSERIIKKGEGS 108

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VDV+ +           +VL+N++++AI
Sbjct: 109 TLASLISPNMRAVTIRVNDVVGVAGFLLPGNRVDVLNLFKKDGALH-TDIVLANVKILAI 167

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE +  +    TLEL+  QA+ L+ A+   KL L LR+  D     S + ++  
Sbjct: 168 DQRSSNDENKPKLVRAVTLELSLEQAEILLIAKGRGKLQLALRNPND-----SAEVELAL 222

Query: 239 VQEEGKEIQ 247
           + E  K  +
Sbjct: 223 INETEKREK 231


>gi|194288837|ref|YP_002004744.1| pilus assembly transmembrane protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193222672|emb|CAQ68675.1| PILUS ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG
           19424]
          Length = 279

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 23/252 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK TR ++ ++++ V  + A + A R +      + + +            +  DL +G 
Sbjct: 1   MKNTRAILMLLIALVAGVAAVVSASRWLVQQSSSSVKQVVV----------AANDLNLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            +    L  V++P  +V  G   D      ++ L+G +VR  + +G+PI   KL   G  
Sbjct: 51  PLNGAQLRMVSWPAGSVPPGAFTD------LKALEGRVVRTSLQRGEPILDAKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNI 174
           GGLS+++  GKRA T+ ++    V G   P ++VDV++        S+      +VL  I
Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKSSQNSSISKIVLEKI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  DE +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+   S+  
Sbjct: 165 LVLAVAQQVSRDETQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDVADISTGG 224

Query: 234 SDVWDVQEEGKE 245
           +    +  +  E
Sbjct: 225 ATKGTLLGKAPE 236


>gi|323499922|ref|ZP_08104881.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
 gi|323315163|gb|EGA68215.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
          Length = 247

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++  ++S VF L A   A + +     Q +  +     +   V+I+  ++  G  +    
Sbjct: 7   ILLFLLSIVFGLGAVFFAKQWMDR---QLQPQVEMELIEREPVIIASQEIPAGTPIEEQH 63

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSL 124
           +       +   +G           +EL G +V   I +G+ +   +L   G G  L+SL
Sbjct: 64  VSSRLLEVDWRNEGQFTKA------EELIGQVVATTIYQGEVVHQNRLAAPGEGSTLASL 117

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           +P+ KRA T+ ++    V G + P + VDV+     S        VL +I+V+A+D    
Sbjct: 118 IPENKRAVTIRVNDVIGVAGFLLPGNRVDVLNTIKYSSTYANTVTVLKDIKVLAVDQTAR 177

Query: 185 SDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           + E + ++    TLE++P  A+ L+ A+S  ++ L LR+  +  
Sbjct: 178 TKENKPIIVRAVTLEVSPKDAEKLLTARSKGEIQLTLRNPHEEE 221


>gi|307304372|ref|ZP_07584123.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
 gi|307318079|ref|ZP_07597515.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|306896120|gb|EFN26870.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|306902574|gb|EFN33168.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
          Length = 263

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ ++++      A  +A   +     +  EV          VL++  +L  G VV 
Sbjct: 1   MIRIVILLLALASGGAASWLA---LGTGDQRAVEVAEVQETPSQEVLVAAAELKRGAVVE 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            N L W  + E  +   FI    +P+A   L G L     + G+PIR +KL   G G LS
Sbjct: 58  ENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSLALSGFVAGEPIRDDKLAQGGTGYLS 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-----SLSERKPTVTVVLSNIRVI 177
           SLLP GKRA  + ++  S  GG I PNDHVDV+        S    K     +LSNIRV+
Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDASGDAGKVVSRAILSNIRVL 176

Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D  +    D   ++G TATLE+ P Q  A+ AA++   +SL LR+I D + +S  +++
Sbjct: 177 AVDQTVSQASDGASVIGKTATLEVDPEQISAVAAAEASGTVSLALRAITDNHEASVVEAE 236


>gi|103486618|ref|YP_616179.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256]
 gi|98976695|gb|ABF52846.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256]
          Length = 345

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   ++M IV + V A+ A      ++                    +L++   L VG +
Sbjct: 1   MDTRKIMLIVGALVIAIGAAFGVNYMMRGAGAPAARAAAAPEITGPMILVATRQLPVGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           V P+   +  +P++ V + +   V +   +  L G +VR PI  G P+    LV     G
Sbjct: 61  VGPDSFRFQPWPKDLVENAYF--VKEKTDVNTLVGTVVRHPITAGQPLTQGALVHPNDRG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---------LSERKPTVTVV 170
            L++ L  G RA T+ +S    V G + P D VDVV+ ++           ++  T   +
Sbjct: 119 FLAAALGPGMRAITVKVSQEQGVAGFVFPGDRVDVVLTQTIEVEEGSTYPDDQIFTAETI 178

Query: 171 LSNIRVIAIDHNIDSDERV--LVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           + NIRV+A D   D+++        T    TLE TP  A+ +  AQ + +LSL LR +A+
Sbjct: 179 VRNIRVLATDQRYDAEDETGKTPVRTFGSVTLEATPEIAEKIAVAQGMGRLSLALRPLAE 238

Query: 226 LN 227
             
Sbjct: 239 SA 240


>gi|260431083|ref|ZP_05785054.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414911|gb|EEX08170.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 293

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 17/252 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP----------AKFINVLI 50
           M+    + ++V    A  A  +A   ++ +                         + VL+
Sbjct: 1   MRAVFGLVLIVGIALAGGAVYLARNYITEYQNALARERQAAQEALASAKVDVVPTVGVLV 60

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +   L  G  +T   +  V +PE  V +G   ++         +   V   + K + I  
Sbjct: 61  ANRPLKYGERLTEEDIRVVDWPENAVPEGAFTEMAALFPETGANERFVLRAMEKDEAIME 120

Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RK 164
            K+   G   GL+S L KG RA  + + ++S V G ++P D VDV    SLS      R 
Sbjct: 121 VKVTKPGELAGLTSRLEKGMRAFAISVDVASGVSGFLRPGDVVDVYWTGSLSGAVEGARG 180

Query: 165 PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
               ++ +NI +IA+D +  SD     +  T T+  TP Q  AL  AQ+  +LSL L  +
Sbjct: 181 EITRLIQTNIELIAVDQSAGSDVTGTTIARTVTVAATPEQVAALAQAQNTGRLSLALVGV 240

Query: 224 ADLNPSSSEDSD 235
            D   +S+ + D
Sbjct: 241 HDETVASAIEVD 252


>gi|163733543|ref|ZP_02140986.1| pilus assembly domain protein [Roseobacter litoralis Och 149]
 gi|161393331|gb|EDQ17657.1| pilus assembly domain protein [Roseobacter litoralis Och 149]
          Length = 276

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 6/234 (2%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGMVVTPN 64
           M ++     A  A  +A   +  +  +         A      V ++   L  G  + P 
Sbjct: 1   MVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMQSAIVPTQPVFVATRHLRYGDTLNPE 60

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSS 123
            +  V +P   + DG   D+         +  L+  P+   + +   K+ + G + GL++
Sbjct: 61  DVRAVNWPTNAIPDGIFTDIAVLFPEGTDEPRLIIRPMEPNEALLAVKITEPGEDIGLTT 120

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVIAID 180
            L KG RA  + + +++ V G ++P D VDV      ++ + R+    ++ S +R+IA+D
Sbjct: 121 RLEKGMRAFAIRVDVATGVSGFLRPGDKVDVYWTGGVQTSNGREDVTKLIQSAVRLIAVD 180

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
              D      +  T T+  +P Q  AL  AQS   LSL L    D         
Sbjct: 181 QTEDQMNGARIARTVTVAASPEQVAALAQAQSTGNLSLSLVGAGDDAELDEIKV 234


>gi|269966891|ref|ZP_06180964.1| putative pilus assembly protein [Vibrio alginolyticus 40B]
 gi|269828558|gb|EEZ82819.1| putative pilus assembly protein [Vibrio alginolyticus 40B]
          Length = 251

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 17/250 (6%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           +M +++S VF L A +IA + +   +  T E+      +   VL++  +L  G +++   
Sbjct: 7   IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVLVAAMELEPGTILSEKH 63

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124
           L       + +      D       ++  G +V   I  G+ +   +L   G G  L++L
Sbjct: 64  LSTKLMEVDWI------DDETLKVKEQALGRIVANTIYAGELVNPHRLALPGEGATLAAL 117

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-PTVTVVLSNIRVIAIDHNI 183
           +P+ KRA T+ ++    V G + P + VDV+   S  + K  T   VL NI V+A+D   
Sbjct: 118 IPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAVDQTA 177

Query: 184 DS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            + D + ++    TLE+TP +A+ L++A S   + L LR+     P   +   V      
Sbjct: 178 KTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRN-----PHEVDKPVVARKYTP 232

Query: 243 GKEIQIIKAG 252
              + IIK  
Sbjct: 233 RPSVTIIKGS 242


>gi|167574002|ref|ZP_02366876.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis
           C6786]
          Length = 282

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+ +G  + PN L  V +P  +V  G   DV      + 
Sbjct: 24  ASRWLVQTSSSAVTPVAVAAIDVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KS 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGSKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE+TP QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  ++  +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALNTGGA 225


>gi|110679398|ref|YP_682405.1| pilus assembly domain-containing protein [Roseobacter denitrificans
           OCh 114]
 gi|109455514|gb|ABG31719.1| pilus assembly domain protein [Roseobacter denitrificans OCh 114]
          Length = 282

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 6/240 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVG 58
           M++   M ++     A  A  +A   +  +  +       + A      V ++   L  G
Sbjct: 1   MRVIFGMVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMHSAIVPTQQVFVATRHLRYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             + P  +  V +P   +  G   D+         +  L+  P+   + +   K+ + G 
Sbjct: 61  DTLKPEDVRAVNWPVNAIPQGVFTDIAALFPEGTDEPRLIIRPMEPSEAVLAVKITEPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNI 174
           + GL++ L KG RA  + + ++S V G ++P D VDV      ++ + R+    ++ + +
Sbjct: 121 DIGLTTRLEKGMRAFAIRVDVASGVSGFLRPGDKVDVYWTGGVQTGNGREDVTKLIQTAV 180

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           R+IA+D   D      +  T T+  TP Q  AL  AQS   LSL L  + D         
Sbjct: 181 RLIAVDQIDDQMNGARIARTVTVAATPEQVAALAQAQSTGNLSLSLVGVGDDEELDEIKV 240


>gi|145219385|ref|YP_001130094.1| SAF domain-containing protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145205549|gb|ABP36592.1| SAF domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 262

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 115/239 (48%), Gaps = 19/239 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + + +   ++ +   +A   A R V+                   V+I    + +G  +T
Sbjct: 1   MKKPIIAAIALILGAMAAFTAARWVNISRHTGP-----------KVVIVAQPIELGKAIT 49

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121
              ++ V +P  ++  G +          E+ G + RV ++ G+P+   KL  +G  GGL
Sbjct: 50  TEQIKTVNWPGADIPQGAVSKA------TEVVGRIARVSMMPGEPVLPGKLAPKGATGGL 103

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           +S++  GKRA T+ ++   AV G   P   VD+++    + R+P    VLS ++V+A+  
Sbjct: 104 ASIISDGKRAITVKVNEVIAVAGFALPGSFVDILVSGKDANRQPFSRTVLSRVKVLAVAQ 163

Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
              ++ ++  V +  TLELTP +++ L  A+S+  LSLVLR+  D    +S    + D+
Sbjct: 164 ETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGALSLVLRNELDTGEVNSAGVRLSDL 222


>gi|83717368|ref|YP_440455.1| pilus assembly protein [Burkholderia thailandensis E264]
 gi|167617228|ref|ZP_02385859.1| pilus assembly protein [Burkholderia thailandensis Bt4]
 gi|257141103|ref|ZP_05589365.1| pilus assembly protein [Burkholderia thailandensis E264]
 gi|83651193|gb|ABC35257.1| pilus assembly protein [Burkholderia thailandensis E264]
          Length = 279

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+ +G  + PN L  V +P  +V  G   D      ++ 
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKS 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE+TP QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  ++E +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKSALTTEGA 225


>gi|167579113|ref|ZP_02371987.1| pilus assembly protein [Burkholderia thailandensis TXDOH]
          Length = 279

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+ +G  + PN L  V +P  +V  G   D      ++ 
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKS 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE+TP QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  ++E +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKSALTTEGA 225


>gi|167725246|ref|ZP_02408482.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           DM98]
          Length = 245

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+++G  + PN L  V +P  +V  G   D+        
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  S+  +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225


>gi|113866745|ref|YP_725234.1| flp pilus assembly protein [Ralstonia eutropha H16]
 gi|113525521|emb|CAJ91866.1| flp pilus assembly protein [Ralstonia eutropha H16]
          Length = 280

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 23/252 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK TR ++ ++++ V  + A + A R +      +   +            +  DL +G 
Sbjct: 1   MKNTRAILMLLIALVAGVAAVVSASRWLVQQSSSSVRQVVV----------AANDLNLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            +  + L  V++P  +V  G  +D      M+ L+G +VR  + +G+P+   KL   G  
Sbjct: 51  PLNGSQLRMVSWPTGSVPPGAFED------MKALEGRVVRTSLQRGEPVLDAKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNI 174
           GGLS+++  GKRA T+ ++    V G   P ++VDV++  +      +      +VL  I
Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKTTQSGSISKIVLEKI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+   S+  
Sbjct: 165 LVLAVAQQVSRDDTQPKVVNAVTLEVTPEQAEKLDVARSVGTLSLVLRNQLDVADISTGG 224

Query: 234 SDVWDVQEEGKE 245
           +    +  +  E
Sbjct: 225 ATKGTLLGKTPE 236


>gi|212635454|ref|YP_002311979.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3]
 gi|212556938|gb|ACJ29392.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3]
          Length = 267

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    L+ +V+S VF + A  +A   +  +         E  +    V+    ++ +G +
Sbjct: 1   MNNKTLLFVVLSLVFGVTAVYLAQNWLKSNTKD------EVISTTGTVITMATEVPLGAI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L     PE  +  G + D      + E +G +V+  +  G+ +R E+L  +G G 
Sbjct: 55  LQRKHLSLTTLPESLIPKGAVLD------LAEAEGKVVKQKLYAGEVLRAERLTAKGEGS 108

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VD++ +   S  K    +VLSN++++AI
Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSSGLK--TDIVLSNVKILAI 166

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           D    +DE + ++    TLEL+  QA+ L+ A+S   L L LR+  D  
Sbjct: 167 DQRASNDENKPVLVRAVTLELSLDQAEILMIAKSRGSLQLALRNPNDKA 215


>gi|221067359|ref|ZP_03543464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
 gi|220712382|gb|EED67750.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
          Length = 281

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 109/208 (52%), Gaps = 14/208 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  D+ +G  + PN+L  V +P  ++ DG   D      MQ+L   +V+V +L+G+
Sbjct: 38  KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91

Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159
            +   KL   G  GGL++++  GKRA T+ ++    V G   P ++VDVV+         
Sbjct: 92  AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQAGK 151

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
           + + +     VL N+ V+A+    D DE +  V S  TLEL+P  A+ L  A+SV  LSL
Sbjct: 152 MEDSRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPGDAEKLDLARSVGNLSL 211

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEI 246
           VLR+  D +P+S+       +    + +
Sbjct: 212 VLRNQIDKDPTSTVGITKHQLFGTPEPV 239


>gi|254229331|ref|ZP_04922748.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25]
 gi|262393416|ref|YP_003285270.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25]
 gi|151938139|gb|EDN56980.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25]
 gi|262337010|gb|ACY50805.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25]
          Length = 251

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 17/250 (6%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           +M +++S VF L A +IA + +   +  T E+      +   VL++  +L  G +++   
Sbjct: 7   IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVLVAAMELEPGTILSEKH 63

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124
           L       + +      D       ++  G +V   I  G+ +   +L   G G  L++L
Sbjct: 64  LSTKLMEVDWI------DDETLKVQEQALGRIVANTIYAGELVNSNRLALPGEGATLAAL 117

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-PTVTVVLSNIRVIAIDHNI 183
           +P+ KRA T+ ++    V G + P + VDV+   S  + K  T   VL NI V+A+D   
Sbjct: 118 IPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAVDQTA 177

Query: 184 DS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            + D + ++    TLE+TP +A+ L++A S   + L LR+     P   +   V      
Sbjct: 178 KTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRN-----PHEVDKPVVARKYTP 232

Query: 243 GKEIQIIKAG 252
              + IIK  
Sbjct: 233 RPSVTIIKGS 242


>gi|269962016|ref|ZP_06176371.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3]
 gi|269833339|gb|EEZ87443.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3]
          Length = 251

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 17/258 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   +M +++S VF L A +IA + +   +  T E+      +   VL++  +L  GMV+
Sbjct: 3   KTQVVMLLLLSIVFGLAAVLIAKQWIDGQNQPTVEL---EEIERHPVLVAAMELEPGMVL 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
               L       + + +  +    Q        G +V   I  G+ +   +L   G G  
Sbjct: 60  EEKHLTTKLMEVDWIEEDTLKVSEQA------LGRIVANTIYSGEMVNPNRLALPGEGAT 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179
           L++L+P+ KRA T+ ++    V G + P + VD++   S  + K  +   VL NI+V+A+
Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVLAV 173

Query: 180 DHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    + D + ++    TLE+TP +A+ L++  S  K+ L LR+     P   +   V  
Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRN-----PHEVDKPPVAR 228

Query: 239 VQEEGKEIQIIKAGVIVN 256
                  + IIK     N
Sbjct: 229 KYTPRPSVTIIKGSQASN 246


>gi|296444396|ref|ZP_06886361.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b]
 gi|296258043|gb|EFH05105.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b]
          Length = 264

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 124/259 (47%), Gaps = 16/259 (6%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEE---VITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +     A+VAG  A  ++S      +    V    P     VL++  DL  G  +     
Sbjct: 6   IAVLGVAIVAGGGAFMMLSTEPTPPQPMHLVAPPPPRTTDQVLVAARDLPFGAALAEADT 65

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLL 125
            W+ +P   V  G +     P   ++++G  VR P+  G+PIR E+L+     GL S+++
Sbjct: 66  SWIEWPISAVPPGVLRKSEAPEIKKDIEGAFVRTPLANGEPIRRERLIKGQTPGLMSTMI 125

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAI 179
             G+RA  +D+S ++  GG I PNDHVDV+ +    ++           V+L N+RV+A+
Sbjct: 126 SAGRRAVAIDVSPNTTAGGFILPNDHVDVIRLYRDPDQGGQIGSDMNSEVILRNVRVLAM 185

Query: 180 DH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
                  + E  + G+TATL+L P QA+ ++ AQ   +L+L+LR IAD    +  D    
Sbjct: 186 GPVFQTKNGESSVTGATATLDLEPRQAELVILAQRSGQLALMLRPIAD----ALADEKPE 241

Query: 238 DVQEEGKEIQIIKAGVIVN 256
                   + I++ GV   
Sbjct: 242 SAAPGQDPLTIVRFGVTST 260


>gi|167821373|ref|ZP_02453053.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 91]
          Length = 251

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+++G  + PN L  V +P  +V  G   D+        
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  S+  +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225


>gi|153834044|ref|ZP_01986711.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
 gi|148869599|gb|EDL68589.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
          Length = 251

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 17/258 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   +M +++S VF L A +IA + +   +  T E+      +   VL++  +L  G ++
Sbjct: 3   KTQIVMLLLLSIVFGLAAVLIAKQWIDGQNQPTVEL---EEVERHPVLVAAMELEPGTIL 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
               L       + + +  +         ++  G +V   I  G+ +   +L   G G  
Sbjct: 60  EEKHLTTKLMEVDWIEESTLK------VSEQALGRIVANTIYSGEMVNPNRLALPGEGAT 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179
           L++L+P+ KRA T+ ++    V G + P + VD++   S  + K  +   VL NI+V+A+
Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVLAV 173

Query: 180 DHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    + D + ++    TLE+TP +A+ L++  S  K+ L LR+     P   +   V  
Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRN-----PHEVDKPVVAR 228

Query: 239 VQEEGKEIQIIKAGVIVN 256
                  + IIK     N
Sbjct: 229 RYTPRPSVTIIKGSQASN 246


>gi|260776716|ref|ZP_05885611.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607939|gb|EEX34204.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 247

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 19/248 (7%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++  ++S  F L A   A + +        EV        +    +  ++  G V+    
Sbjct: 7   ILLFLLSIAFGLGAVFFAKQWMDRQLQPQTEVEVVEREPVVV---AAQEIPAGSVIGEQH 63

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSL 124
           L         + +    D  Q  + +EL G +V   I  G+ I   +L   G G  L++L
Sbjct: 64  LT------SKLLEKDWRDEFQFTSSEELIGQVVATSIFPGEIINQNRLTVPGEGSTLAAL 117

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           +P+ KRA T+ ++    V G + P + VD++     SE   + + VL +I+V+A+D    
Sbjct: 118 IPENKRAVTIRVNDVIGVAGFLLPGNKVDILSTVKYSETSASTSTVLKDIKVLAVDQTAR 177

Query: 185 S-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
           + D + ++    TLE+TP QA+ L+ A+S  ++ L LR+          + +    +   
Sbjct: 178 TKDNKPIIVRAVTLEVTPRQAEKLLTARSKGEIQLTLRNP--------HEEEKAVKRYVA 229

Query: 244 KEIQIIKA 251
             + IIK 
Sbjct: 230 PSVTIIKG 237


>gi|167566933|ref|ZP_02359849.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis
           EO147]
          Length = 274

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+ +G  + PN L  V +P  +V  G   DV      + 
Sbjct: 16  ASRWLVQTSSSAVTPVAVAAIDVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KS 69

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 70  LEGRVVRTSLARGEPVLGSKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 129

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE+TP QA+ 
Sbjct: 130 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEK 189

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  ++  +
Sbjct: 190 LDLARSVGTLSLVLRNQVDKDALNTGGA 217


>gi|167851181|ref|ZP_02476689.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           B7210]
          Length = 253

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+++G  + PN L  V +P  +V  G   D+        
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G +VR  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  S+  +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKDTLSTGGA 225


>gi|149911410|ref|ZP_01900028.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
 gi|149805518|gb|EDM65523.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
          Length = 264

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 107/232 (46%), Gaps = 15/232 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ + +S +F + A +IA   +  +           P   + +  S   + +G +
Sbjct: 1   MNKKTVISVAISIMFGIGAILIAQSWLDTNKPSA-------PENQVYIAFSTMVIPIGTI 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    ++    PE    D  + D        E+ G++ +  I   D IRLE+L+ +G G 
Sbjct: 54  IEAKHIKLKILPESMSPDNTVTDP------DEIYGMIAKDTIYIDDIIRLERLLIKGQGS 107

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+ +  RA ++ +     V G + P + +D++   S +    +  V+L NI+++AI
Sbjct: 108 TLASLISENMRAVSIRVDDVVGVAGFLLPGNRIDILNTVSGNGGATSTEVILHNIKILAI 167

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           D     DE +  +    T+E+   QA+ L+ A++  +L L LR+  D +   
Sbjct: 168 DQRAAIDENKPQLVRAITVEVNLEQAEILMTARNQGRLQLALRNPTDSHAVD 219


>gi|193213116|ref|YP_001999069.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327]
 gi|193086593|gb|ACF11869.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327]
          Length = 263

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 119/239 (49%), Gaps = 18/239 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + + + I ++ V   +A  IA R+ +     +E            V+I    +  G V+ 
Sbjct: 1   MKKPVIIAIALVLGAMAAYIAARMSTVQTDGSE----------AKVVIVAMPIDAGKVIA 50

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121
           P+ ++ V +P   V               ++ G + RV ++ G+P+  +KL  +G  GGL
Sbjct: 51  PDQIKAVQWPSSAVPLNAFARTA------DVVGRVARVSMIAGEPVLPDKLALKGAKGGL 104

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           +S LP+GKRA T+ ++   AV G   P  +VD+++      R+     VLS ++V+A+D 
Sbjct: 105 ASTLPEGKRAITVKVNEVIAVAGFALPGSYVDILVNGKDDNRRSFSRTVLSRVKVLAVDQ 164

Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
               D ++  + +  T+EL+P +A+ L  A+++  LSLVLR+  D    +SE   + D+
Sbjct: 165 VTTGDPDKPKLVNAVTVELSPREAEKLDLARNIGNLSLVLRNELDTAEVNSEGVRLPDI 223


>gi|84387246|ref|ZP_00990267.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
 gi|84377893|gb|EAP94755.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
          Length = 249

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 17/257 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K    +  ++S VF L A   A + +      T EV T    +   V+++  ++  G ++
Sbjct: 3   KSQVFLLFLLSVVFGLAAVFFAKQWMDDQVQPTVEVET---VERRPVVVASQEIEAGTII 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120
               L       + + +    D        +L G +V   I  G+ +   +    G G  
Sbjct: 60  EDQFLTTRLMEVDWINENNYSDKA------DLIGKVVANTIYAGEVLHKLRFTVPGEGST 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L++L+P+ KRA T+ +     V G + P + VD++   S  +       VL +I+V+A+D
Sbjct: 114 LAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTISYGKNSAATQTVLKDIKVLAVD 173

Query: 181 HNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
               + E   ++    TLE+TP +A+ L+ A+S   + L LR+  ++      +  V   
Sbjct: 174 QTAKTKENSPIIVRAVTLEMTPKEAEKLLTAKSKGSIQLTLRNPHEV------EKKVVRR 227

Query: 240 QEEGKEIQIIKAGVIVN 256
                 + IIK     N
Sbjct: 228 YVPRPSVTIIKGTETSN 244


>gi|94309593|ref|YP_582803.1| Flp pilus assembly CpaB [Cupriavidus metallidurans CH34]
 gi|93353445|gb|ABF07534.1| Flp pilus assembly CpaB precursor [Cupriavidus metallidurans CH34]
          Length = 281

 Score =  188 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 12/190 (6%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DL +G  +  + L+ V++P  +V  G  +D       + LDG +VR  + +G+PI  
Sbjct: 42  AANDLDLGQPLNGSQLKLVSWPAGSVPPGAFEDP------KTLDGRVVRTSLQRGEPIID 95

Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKP 165
            KL   G  GGLS+++  GKRA T+ ++    V G   P ++VDV++  +      +   
Sbjct: 96  AKLAPVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEDTKSAQNGS 155

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
              +VL  I V+A+   +  D+ +  V +  TLE++P QA+ L  A+SV  LSLVLR+  
Sbjct: 156 ISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVSPDQAEKLDVARSVGTLSLVLRNQM 215

Query: 225 DLNPSSSEDS 234
           D+   ++  +
Sbjct: 216 DVADINTGGA 225


>gi|150377241|ref|YP_001313836.1| SAF domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150031788|gb|ABR63903.1| SAF domain protein [Sinorhizobium medicae WSM419]
          Length = 263

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 11/240 (4%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ ++++      A  +A   +      + EV     A    VL++  +L  G  + 
Sbjct: 1   MIRIVILLLALASGGAASWLA---LGMGDEPSVEVAEVEEAPAQEVLVAAAELKRGAAIE 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            N L W  + E  +   FI    + +A  EL G L     + G+PIR +KL  RG G LS
Sbjct: 58  ENHLRWQPW-EGEIPPVFISRSSRADATTELKGSLALSDFVAGEPIREDKLAQRGTGYLS 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177
           SLLP GKRA  + ++  S  GG I PNDHVDVV        +    K     +LSNIRV+
Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVVHTAVRPDAAGDAGKVVSRAILSNIRVL 176

Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D  +    D   ++G TATLE+ P Q  A+ AA++   +SL LR+I+D + +S  +++
Sbjct: 177 AVDQTVSQAADGTSVIGKTATLEVNPEQIAAVAAAEASGTVSLALRAISDNHEASVVEAE 236


>gi|114705457|ref|ZP_01438365.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506]
 gi|114540242|gb|EAU43362.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506]
          Length = 282

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 94/267 (35%), Positives = 152/267 (56%), Gaps = 14/267 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT---EEVITENPAKFINVLISKGDLAV 57
           M  ++++ + V+ + A+ AG++A+++ +P   +         + P K  +VLIS GD+ +
Sbjct: 10  MNRSQIIVVGVAALAAIGAGLLALKVSTPSQQEPVIITAAPAQPPVKLEDVLISSGDVPM 69

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           GM    N L W  +P + + +GFI    +P A+ EL+G + R     G+P+R  KL+   
Sbjct: 70  GMRFD-NGLSWQKWPVDGIGEGFILKNDRPEAIDELNGSIARQAFFAGEPVRSSKLIQSD 128

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLS 172
           +G +S+LLP GKRA  + I+ ++A GG I PNDHVDV+M R +              VL 
Sbjct: 129 SGFMSALLPAGKRAVAVQIAAATAAGGFILPNDHVDVIMTRRVEGDGGANAKILTETVLR 188

Query: 173 NIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPS 229
           N+RV+AID  I+    +R +VGS ATLE+   QA+AL AAQ +A +  L LRS+AD  P 
Sbjct: 189 NLRVLAIDQTIEDAEGQRNVVGSVATLEVDGEQAEALTAAQQIADRFVLSLRSLADSIPG 248

Query: 230 SSEDSDVWDVQEEGKE--IQIIKAGVI 254
           S   +     +E+ +   ++I++ G +
Sbjct: 249 SPGYAAFLLAEEKARRGPVRIVRYGKV 275


>gi|28899194|ref|NP_798799.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836767|ref|ZP_01989434.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810]
 gi|260361568|ref|ZP_05774595.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030]
 gi|260876725|ref|ZP_05889080.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034]
 gi|260898196|ref|ZP_05906692.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466]
 gi|260900396|ref|ZP_05908791.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037]
 gi|28807418|dbj|BAC60683.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749913|gb|EDM60658.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810]
 gi|308089099|gb|EFO38794.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466]
 gi|308091466|gb|EFO41161.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034]
 gi|308109142|gb|EFO46682.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037]
 gi|308114026|gb|EFO51566.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030]
 gi|328474269|gb|EGF45074.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 10329]
          Length = 251

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 17/250 (6%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           +M +++S VF L A +IA + +   +  T E+      +   V+++  +L  G ++    
Sbjct: 7   IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVVVATMELEPGTILDEKH 63

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124
           L       + +      D       ++  G +V   I  G+ +   +L   G G  L++L
Sbjct: 64  LTTKLMEVDWI------DDETLKVPEQALGRIVANTIYAGELVNPNRLAQPGEGATLAAL 117

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI 183
           +P+ KRA T+ ++    V G + P + VDV+   S  + K   T  VL NI V+A+D   
Sbjct: 118 IPENKRAVTIRVNDVIGVAGFLLPGNKVDVLSTVSYGKGKQATTLTVLKNINVLAVDQTA 177

Query: 184 DS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            + D + ++    TLE+TP +A+ L++A S  ++ L LR+     P   +   V      
Sbjct: 178 KTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGEIQLALRN-----PHEVDKPVVAKKYTP 232

Query: 243 GKEIQIIKAG 252
              + IIK  
Sbjct: 233 RPSVTIIKGS 242


>gi|163751743|ref|ZP_02158961.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99]
 gi|161328395|gb|EDP99554.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99]
          Length = 270

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 117/250 (46%), Gaps = 20/250 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S VF +VA  +A   +  +         +       V+     + +G +
Sbjct: 1   MNNKTMLFVLLSLVFGVVAVFLAQSWLESNSE------ADGLEATSTVITMATLVPLGAI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L+    P   + +  I         +E +G++V+  +  G+ +R E+++ +G G 
Sbjct: 55  LERKHLKLTPMPNSVIPEAAIKT------FEEAEGMVVKHNLYSGEILRSERIIKKGEGS 108

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VDV+ +           +VL+NI+++AI
Sbjct: 109 TLASLISPNMRAVTIRVNDVIGVAGFLLPGNRVDVLNLFKKDGSLH-TDIVLANIKILAI 167

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE +  +    TLE++  QA+ L+ A+   KL L LR+  D     S + ++  
Sbjct: 168 DQRSSNDENKPTLVRAVTLEMSLEQAETLLIAKGRGKLQLALRNPND-----SAEVELAL 222

Query: 239 VQEEGKEIQI 248
           + E+ +  +I
Sbjct: 223 INEKQQREEI 232


>gi|56697918|ref|YP_168289.1| CpaB family protein [Ruegeria pomeroyi DSS-3]
 gi|56679655|gb|AAV96321.1| CpaB family protein [Ruegeria pomeroyi DSS-3]
          Length = 305

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 105/257 (40%), Gaps = 14/257 (5%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMR----LVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           K+  + G+V+    AL  G + M         + +  E            V ++   L  
Sbjct: 17  KMRAVFGLVLIVGIALAGGAVMMARNYISAYQNELARERQARAQIVPTKTVYVASRPLRY 76

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  +T   +  V +PE  + +G   D       ++ +   V   + K + I   K+   G
Sbjct: 77  GERLTKEDVRAVNWPENAIPEGTFLDAAMLFPERQEENRYVLRAMEKDEAIMAIKVTKPG 136

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVT 168
            + GL+S L +G RA  + + ++S V G ++P D VDV     LS         +     
Sbjct: 137 EDAGLTSQLARGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGGLSGATGPLEGMQGEITR 196

Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           ++ +NI+++AID     D     +  T T+   P Q  +L  AQ+  +L+L L    D  
Sbjct: 197 LIQTNIQIVAIDQISGGDVTGANIARTVTVAALPQQVASLAQAQTTGRLTLALVGADDDT 256

Query: 228 PSSSEDSDVWDVQEEGK 244
            +++ + D   +   G 
Sbjct: 257 IAAAVEVDQRMLLGLGA 273


>gi|167908128|ref|ZP_02495333.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           NCTC 13177]
          Length = 256

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 12/208 (5%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +  ++  + +    V ++  D+++G  + PN L  V +P  +V  G   D+        
Sbjct: 24  ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           L+G + R  + +G+P+   KL   G  GGLS+++  G RA T+ ++    V G   P ++
Sbjct: 78  LEGRVARTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137

Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206
           VDV++          ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ 
Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           L  A+SV  LSLVLR+  D +  S+  +
Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225


>gi|239908022|ref|YP_002954763.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus
           RS-1]
 gi|239797888|dbj|BAH76877.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus
           RS-1]
          Length = 300

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 112/252 (44%), Gaps = 18/252 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  I+++ + AL AG++ +R +        E   +  A  + V+++   +  G  
Sbjct: 1   MKTKAVPHIILAVILALTAGVLTIRWLGSVRAPKVE-QAKPAAPKVEVVVAARAIPKGGR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +  ++++   F  E    G + DV      QE  G +    I   DPI  +KL+ +G  +
Sbjct: 60  LDASMVKSKGFEAEAAPQGALRDV------QEAYGRISARDISPDDPITPDKLMPKGATS 113

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175
           GGL + +  GKRA T+  S     GG+I P   VDV++   +   K       ++L N+ 
Sbjct: 114 GGLDASVAPGKRAFTIKGSKIMGSGGLITPGCRVDVLVTYPVPNGKNDEKINKIILENVP 173

Query: 176 VIAIDHN----IDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           ++         I  D R  + +T   TL + P +A+ L  A     L L LR+  D +  
Sbjct: 174 ILTTGTERETKIGKDGREELANTDFYTLMVAPEEAERLALASDTGSLHLALRTPGDADIV 233

Query: 230 SSEDSDVWDVQE 241
           ++  +DV    E
Sbjct: 234 TTSGADVAKSLE 245


>gi|323491531|ref|ZP_08096710.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
 gi|323314107|gb|EGA67192.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
          Length = 247

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++  ++S  F L A   A + +        EV        +   I+  ++  G V+    
Sbjct: 7   ILLFLLSIAFGLGAVFFAKQWMDNQLQPQTEVEVVEREPVV---IAAQEIPAGTVIEEQH 63

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSL 124
           +         + +       Q  A ++L G +V   +  G+ + + +L ++G G  L+SL
Sbjct: 64  IT------NKLLEKAWRSESQFTASEDLIGQVVASNVYPGEILHISRLANQGEGSTLASL 117

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           +P+ KRA T+ ++    V G + P + VDV+      +       VL  I+V+A+D    
Sbjct: 118 IPENKRAVTIRVNDVIGVAGFLLPGNKVDVLNTIKYGKNSANTVTVLKEIKVLAVDQTAR 177

Query: 185 SDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           + E + ++    TLE++P QA+ L++AQS   + L LR+  +  
Sbjct: 178 TKENKPIIVRAVTLEVSPRQAEKLLSAQSRGDIQLALRNPHEEE 221


>gi|99082185|ref|YP_614339.1| Flp pilus assembly CpaB [Ruegeria sp. TM1040]
 gi|99038465|gb|ABF65077.1| pilus assembly protein [Ruegeria sp. TM1040]
          Length = 287

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   +    H +  E    +     +NV ++   L  G
Sbjct: 1   MRAAFGLVLIVGVALAGGAVMMAKNYIEAYQHALAQERSNRDAAVPTVNVFVANKTLTYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQ-PNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
             +T   +  VA+PE  + +G   +  +   +    D   V   + K +P+   K+   G
Sbjct: 61  EELTKESVRSVAWPENALPEGVFHEEAELFPSDSPKDARFVLRTMEKNEPLLAVKVTAPG 120

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------KPTVTVV 170
            + G++S L KG RA  + + ++S V G ++P D VDV        R           ++
Sbjct: 121 EDAGITSRLEKGMRAFAIRVDVASGVSGFLRPGDRVDVYWSGQPPARGGQELGGEVTRLI 180

Query: 171 LSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            SNI +IA+D     D    ++  T T++  P +   L  AQ+  +LSL L    D   +
Sbjct: 181 QSNIELIAVDQMSGGDFSSAIIARTVTVKAQPEEVARLAQAQATGRLSLALVGAQDDTIA 240

Query: 230 SSEDSDVWDVQEEG 243
           S  + D   +   G
Sbjct: 241 SLVEVDQRALFGLG 254


>gi|218887828|ref|YP_002437149.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758782|gb|ACL09681.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 274

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 17/245 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + L+ I ++ V ALVAG++  R +  +     ++      + + + ++  D+  G  
Sbjct: 1   MRASSLIQISLALVLALVAGVLVFRFMQVNRAAAPQMAA---PEQVELAVAAADVPRGAK 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118
           +    ++   F + +   G       P       G ++   +  G+PI   +L+  G   
Sbjct: 58  LAAEQIKLAPFLKSSAPSGAFTKDTLP------VGRVLSSAVAAGEPITEARLLQDGASH 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIR 175
           GG+S+L+  G RA  +  +    + G I+P + VDV++      R+ +     +VL N+R
Sbjct: 112 GGVSTLIAPGMRAVAVKGNKVLGLSGFIRPGNRVDVLVTLDDETREKSKSRTKLVLENVR 171

Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+A    +  +      S+    TLE++P QA+ L  A S  +L   LR+ AD     + 
Sbjct: 172 VLATGTELKQEGDDTSTSSVDVYTLEISPPQAEPLALAASRGELHFALRNPADDGTVLTP 231

Query: 233 DSDVW 237
            +DV 
Sbjct: 232 GTDVP 236


>gi|163742212|ref|ZP_02149600.1| CpaB family protein [Phaeobacter gallaeciensis 2.10]
 gi|161384542|gb|EDQ08923.1| CpaB family protein [Phaeobacter gallaeciensis 2.10]
          Length = 266

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 8/220 (3%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
                 + +  E          ++V I+   L  G  +T   +  V +PE  + +G    
Sbjct: 6   YITAYQNELARERASRGENIPLVDVFIANTQLKYGERLTKEHIRSVRWPENAIPEGAFLT 65

Query: 84  VHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSA 141
           +      Q  D   +V   + K + I   K+   G + G++S L KG RA  + + +SS 
Sbjct: 66  MDALFPPQYPDDHRVVLRRMEKDEAILAVKVTKPGEDAGITSRLSKGMRAFAIRVDVSSG 125

Query: 142 VGGMIKPNDHVDVVMVRSLSER-----KPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTA 195
           V G ++P DHVDV    SL+++          ++ +NI +IA+D     D +  ++  T 
Sbjct: 126 VSGFLRPGDHVDVYWTGSLNDQNGGRNGEFTRLIQTNIELIAVDQTAGGDLDGAVIARTV 185

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           T  + P Q  AL  AQS  +LSL L    D   +S  + D
Sbjct: 186 TAAVRPEQVAALAQAQSTGRLSLSLVGAGDDTVASVIEVD 225


>gi|89053489|ref|YP_508940.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1]
 gi|88863038|gb|ABD53915.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1]
          Length = 274

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 3/250 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M++  ++ + V    A  A  IA      +     E   +     + +++    L  G  
Sbjct: 1   MRIVFILVLAVGVGLAGFAVSIAKDRFDQYQTALAE-QRDAILPTVELIVVSRQLRYGEQ 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119
           +TP+ ++ + +P E+V  G    + +     E     V   + + +PI L K+   G + 
Sbjct: 60  ITPDDVQLIRWPAEHVPFGAFTTMDELFPPDEEGARTVLRMMEQDEPILLVKVTAPGEDA 119

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
           G++S L  G RA  + + ++S V G ++P D VDV              ++ +N+++IAI
Sbjct: 120 GVASRLEAGMRAIALRVDVNSGVSGFLRPGDRVDVYWTGPGRNGDTVTRLIRANVQLIAI 179

Query: 180 DHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D   D       +  T T+   P    AL  AQ    L+L L  + D       +     
Sbjct: 180 DQIADEQRNSPTIARTITVTARPEDVAALTQAQGSGSLTLALVGVGDETEQGEVEVSTSA 239

Query: 239 VQEEGKEIQI 248
           +  E +E+ +
Sbjct: 240 LLGEIEEVAV 249


>gi|197118221|ref|YP_002138648.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
 gi|197087581|gb|ACH38852.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
          Length = 289

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 117/253 (46%), Gaps = 18/253 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           +TR   +    + AL+ G +A  + + +  +      + P + + +  +  DL +G  + 
Sbjct: 1   MTRPSAMTTVTIIALLLGGLATIMANNYLKKQ----ADKPYEGVPIASAAVDLPLGSKLN 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-- 120
              ++   +P++ +  G   D         L G +V  P+  G+ I   KL+   + G  
Sbjct: 57  ATQVKLATWPKDALPAGGYQDYKP------LVGRIVVRPLSAGEVITENKLMPLNSSGGI 110

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176
           ++ ++P G RA T+ ++  + V G I PN  VDV++      S +ER     ++L N+ V
Sbjct: 111 MTYMVPDGHRAVTVSVNEVAGVAGFITPNSRVDVLLTIPRPGSTNERDNISKIILQNVPV 170

Query: 177 IAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +A     +  E  +  V  T TL++TP++A+ L+       L L+LR++ D+    ++ +
Sbjct: 171 LATGQVTEQKEGGKPGVVPTVTLDVTPIEAEKLIVGTKKGSLQLLLRNVIDVASVDTKGA 230

Query: 235 DVWDVQEEGKEIQ 247
            V       + +Q
Sbjct: 231 TVSRALGGTETLQ 243


>gi|254477805|ref|ZP_05091191.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11]
 gi|214032048|gb|EEB72883.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11]
          Length = 286

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 10/245 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   ++   + +  E          ++V I+   L  G
Sbjct: 1   MRAVFGLVLIVGIALAGGAVMMAKNYITAYQNALAEERASRGEVIPLVDVFIANEPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFI-DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
             +TP  +  V +P+  + +G             E    +V   + K + I   K+   G
Sbjct: 61  ERLTPERVRAVRWPQNAIPEGAFLTAEELFPPQAEEKPRVVLRTMEKDEAILAIKVTKPG 120

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVL 171
            + GL+S L +G RA  + + +SS V G ++P D VDV     + ++          ++ 
Sbjct: 121 EDAGLTSRLERGMRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRVDDQTSERSGDFTRLIQ 180

Query: 172 SNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +NI +IAID +  SD +   +  T T+   P Q  AL  AQS  +L+L L    D   +S
Sbjct: 181 ANIELIAIDQSAGSDLDGATIARTVTVSARPEQVAALAQAQSTGRLTLSLVGAEDDTVAS 240

Query: 231 SEDSD 235
             + D
Sbjct: 241 VIEVD 245


>gi|78186672|ref|YP_374715.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
 gi|78166574|gb|ABB23672.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
          Length = 266

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 15/232 (6%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
            ++     +A  I  R +         V + +      V+I+   +  G  +  N L+ V
Sbjct: 8   AIALTLGAMAAFITARWMG-------VVQSRSEVSGPTVVIAARAIDAGTAIAENQLKAV 60

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKG 128
            +P   V +G            ++ G + RV ++ G+P+   KL     +GGLSS++P G
Sbjct: 61  QWPRSTVPEGASART------DDVAGRIARVSMIAGEPVLPGKLAPTNASGGLSSIIPDG 114

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-E 187
           KRA T+ ++   AV G   P  +VD+++    +ER+P    VLS I+V+A+     ++ +
Sbjct: 115 KRAITVKVNEVIAVAGFALPGSYVDILVSGRDAERQPFSRTVLSRIKVLAVAQETTAEPD 174

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
           +  V +  TLELTP +++ L  A+S+  LSLVLR+  D    +S    + D+
Sbjct: 175 KPKVVNAVTLELTPHESETLDLARSIGVLSLVLRNELDTGEINSAGVRLADI 226


>gi|94497253|ref|ZP_01303825.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58]
 gi|94423358|gb|EAT08387.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58]
          Length = 337

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 19/266 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59
           M   +++ +V + + A+   ++A  ++S     +         A   +VL++   L VG 
Sbjct: 1   MDAKKIVLLVGALIIAVTTALLARNMLSSSSTPSVNAANMPVEADQPHVLVAVKALPVGT 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           ++      +  +P++ V   +        A   L G ++R  I  G P+    LV  G+ 
Sbjct: 61  ILDAESFRFQPWPKDLVEQAYYLRGQADPA--RLAGSVIRTAITAGQPLTQGSLVKPGDR 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSN 173
           G L++ L  G RA T+ +S  ++V G + P D +D+V+ +S++             +L N
Sbjct: 119 GFLAAALAPGMRAVTVPVSAQTSVAGFVFPGDRIDLVLTQSVAGGGDGEPLKVSETILRN 178

Query: 174 IRVIAIDHNIDS---DERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD--- 225
           +RV+A D  +D+   D + +V   S  TLE+TP  A+ +  AQ+V  LS+ LRS+AD   
Sbjct: 179 LRVLATDQRMDALGPDGKPVVQTYSNVTLEVTPKIAEKIAVAQTVGSLSMSLRSMADTPS 238

Query: 226 --LNPSSSEDSDVWDVQEEGKEIQII 249
                 +  D D+ +      E  I+
Sbjct: 239 DLDAAIAGADVDLPEGASPAAEKAIL 264


>gi|329890997|ref|ZP_08269340.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568]
 gi|328846298|gb|EGF95862.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568]
          Length = 310

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 127/302 (42%), Gaps = 50/302 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  ++  I ++ + A+   ++   + S                   VL++  DL  G  
Sbjct: 1   MKPAKIAVICIAALAAIGLALVVRAMGSSGQPTATATAAVETRPMAKVLVAARDLEPGRR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDD------------------------------------- 83
           +    L W  +P + +   FI D                                     
Sbjct: 61  LVDADLSWKDWPADELNPLFITDGPPPPSKAEGAAAENAAVEGAGDAKSTTVDKAMKAVA 120

Query: 84  -VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141
            ++ P A  +  G +VR PIL G+P+   K+V  G+ G +++ L  G RA  + +++ +A
Sbjct: 121 ELNTPGAKSDYIGAVVREPILAGEPLVARKIVRAGDSGYMAAYLEPGMRAMAIRVTVETA 180

Query: 142 VGGMIKPNDHVDVVMVR------SLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGS 193
            GG I P D VDV++ R           K +   V+ N++V+AID +     DE+ +VG+
Sbjct: 181 AGGFILPGDRVDVLLTREVKGSGDDGGTKYSAATVMRNVKVLAIDQSTRAAEDEQAVVGA 240

Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS---SEDSDVWDVQEEGKEIQIIK 250
           TATLELT   A+ L  A+S  +LSLVLRS AD    S               G  +++ +
Sbjct: 241 TATLELTGRDAEVLALAKSEGELSLVLRSYADTAGPSGHVPGAVRGRATGGGGSVVRVYR 300

Query: 251 AG 252
            G
Sbjct: 301 EG 302


>gi|283852072|ref|ZP_06369346.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B]
 gi|283572462|gb|EFC20448.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B]
          Length = 300

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 110/252 (43%), Gaps = 16/252 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  ++++ + ALVAG++ +R +       E        K I VL++   LA G  
Sbjct: 1   MKSKAIPHMILAVILALVAGVLTIRWLGSVRGTGEPGKPAAETKKIEVLVAARPLAKGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118
           +   ++    +  E    G + D        E+ G +    I + DPI  +KL+ +G   
Sbjct: 61  LDTTMVRLKPYDPEAAPLGAMRDAS------EVVGRVTAREISQDDPITPDKLLPKGAAG 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRV 176
           GGL + +  GKRA T+  +     GG+I P   VDV+    +     +    V+L NI V
Sbjct: 115 GGLDASVEPGKRALTVKGTKVMGSGGLITPGCRVDVLSTYNQPGKADEKVTKVILENIPV 174

Query: 177 IAIDH----NIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +         +  D R  + +T   TL +TP +A+ L  A  +  + L LR   D +  +
Sbjct: 175 LTTGTEREVRVGQDGREELANTDFFTLMVTPEEAERLALASDLGNMHLALRKPGDDDVVA 234

Query: 231 SEDSDVWDVQEE 242
           +  +DV    + 
Sbjct: 235 TAGADVARSLDA 246


>gi|114799072|ref|YP_761692.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444]
 gi|114739246|gb|ABI77371.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444]
          Length = 281

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 19/269 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE-----EVITENPAKFINVLISKGDL 55
           M   R++ ++++ V A  A ++  R+  P  V         +I +     I VL +  DL
Sbjct: 1   MSPIRIIILLLALVAAGGAALLVSRMSQPQVVTETVTRDNNIIEKEQVSEIKVLTASRDL 60

Query: 56  AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
            +G  +    L+W  +PE  V +G   +   P A++EL G +V++PI K +PI  +++V 
Sbjct: 61  TIGEQIKAEDLQWSIWPELGVAEGQYTETAAPGAVEELTGAVVKMPIYKLEPIMPQRVVK 120

Query: 116 RGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--------SERKPT 166
           RG  G L  L+ +  RA ++ IS  SA GG I PND VD+++            +  +  
Sbjct: 121 RGEAGLLPVLMGEDMRAVSIGISPESASGGFILPNDRVDLILTYEQTPSATNGLTSARTV 180

Query: 167 VTVVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
              VL N+RV+AID      + +E   +G TATLE+ P +A+ +  +QS  +LSL LR +
Sbjct: 181 SMTVLQNVRVLAIDQTYAPGEPEESTRIGQTATLEVLPSEAELVALSQSKGQLSLALRPL 240

Query: 224 ADLNPSSS--EDSDVWDVQEEGKEIQIIK 250
            DL  SS      ++    E    + II+
Sbjct: 241 NDLAVSSPRKPRLELNGGDEGEGAVMIIR 269


>gi|254293213|ref|YP_003059236.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814]
 gi|254041744|gb|ACT58539.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814]
          Length = 321

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 16/237 (6%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
            EV        + VL++  DL VG  V    L W ++PEE+    F  +   P+A++ + 
Sbjct: 43  SEVGQAEQIPVLKVLVATTDLKVGQFVKEGQLSWQSWPEESNTSSFFTEEMSPDAIEAMQ 102

Query: 95  GVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           G +VR  ++ G+P+  EK+V  G  G ++++L  G RA  ++IS  +A GG I PNDHVD
Sbjct: 103 GAVVRTNMMAGEPLTSEKVVHPGEAGFMAAVLTPGMRAVAVEISAETAAGGFIFPNDHVD 162

Query: 154 VVMVRSLSERKPT-------VTVVLSNIRVIAIDHNI----DSDERVLVGSTATLELTPM 202
           V++   +   +PT       +  +L+N+RV+AID       +     +VG  ATLEL+  
Sbjct: 163 VLLTFEVDVERPTGITEETAIDTILNNVRVLAIDGYYRPVEEEAGDAVVGHRATLELSKQ 222

Query: 203 QAKALVAAQSVAKLSLVLRSIAD-LNPSSSEDSDVWDVQEEGK---EIQIIKAGVIV 255
            A  L+AAQ    LSLVLRSI++   PS +  + +      G     +++ + GV V
Sbjct: 223 DAMVLMAAQERGDLSLVLRSISELSGPSGATANGLAMASRRGAGSDGVRVFQKGVSV 279


>gi|260462608|ref|ZP_05810814.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
 gi|259031514|gb|EEW32784.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
          Length = 351

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 12/254 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ IV++GVF ++A ++A   ++    Q   +   N  +   V+++   L  G +
Sbjct: 1   MRANTIIMIVLAGVFGVLAVVLANIWLAN---QRGAIAQTNEVQRDTVVVAAVALKFGDI 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG---VLVRVPILKGDPIRLEKLVDRG 117
           ++ + L  VA+P   V  G      +        G         I   +P+   K+   G
Sbjct: 58  LSADKLREVAWPAGAVPAGAFKTTEELLTKDLPVGGGTKQALQSIGVNEPVLATKITGPG 117

Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLS 172
               LS++L +G +A ++ ++    V G + P D VD+++ R++ +   T    V V+L 
Sbjct: 118 QRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTVRDDDGTDKSFVDVLLQ 177

Query: 173 NIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +++V+A+D   D   +   V  + TLE +   A+ L  A    +LSL LR  A     ++
Sbjct: 178 SMKVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAASKGETT 237

Query: 232 EDSDVWDVQEEGKE 245
           E   + D+  E   
Sbjct: 238 ERITLSDLTGETPA 251


>gi|78186538|ref|YP_374581.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
 gi|78166440|gb|ABB23538.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
          Length = 262

 Score =  185 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 117/239 (48%), Gaps = 19/239 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + + +   ++ +   +A   A R V+         + ++      V+I    + +G  +T
Sbjct: 1   MKKPIIAAIALILGAMAAFTAARWVN---------VAQHTGP--KVVIVALPIELGKAIT 49

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121
              ++ V +P  +   G   +        ++   + RV ++ G+P+   KL  +G  GGL
Sbjct: 50  AEQIKAVNWPGTDAPQGAYANTA------DVVSRIARVSMMPGEPVLPGKLAPKGATGGL 103

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           +S++P GKRA T+ ++   AV G   P  +VDV++    +  +P    VL+ ++V+AI  
Sbjct: 104 ASIIPDGKRAITVKVNEVIAVAGFALPGSYVDVLVSGKDASHQPFARTVLNRVKVLAIAQ 163

Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
              ++ ++  V +  TLELTP +++ L  A+S+  LSLVLR+  D    +S    + D+
Sbjct: 164 ETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGSLSLVLRNELDTGEENSAGVRMSDL 222


>gi|194335912|ref|YP_002017706.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308389|gb|ACF43089.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 263

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 113/241 (46%), Gaps = 20/241 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  + + + ++ +   +A  +A R +S                   V++ +  +  G  
Sbjct: 1   MKPQQFV-LAIALILGAMAAFLAARWMS-----------VAQTSMSRVVVVEQPIEAGKA 48

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           +  + +  + +P   V       +        + G +  V ++ G+P+   KL      G
Sbjct: 49  IKAHQIRSIDWPGSAVPRDASTRIAS------VVGRIALVSMMPGEPVLPGKLAPTTATG 102

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
           GLSS++PKGKRA T+ ++   AV G   P  +VDV++    + ++P    VL  ++V+AI
Sbjct: 103 GLSSIIPKGKRAITVKVNEVIAVAGFALPGSYVDVLVSSKDANQQPFSVTVLLRVKVLAI 162

Query: 180 DHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
                +D ++  V +  TLELTP +A+ L  A+++  LSLVLR+  D    +S    + D
Sbjct: 163 AQETTADRDKPKVVNAVTLELTPHEAEKLDLARNIGALSLVLRNEFDTGKINSAGVRLSD 222

Query: 239 V 239
           +
Sbjct: 223 I 223


>gi|85859140|ref|YP_461342.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
 gi|85722231|gb|ABC77174.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
          Length = 295

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 19/246 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   L+ +  +   AL+  ++A   +     Q        P +   V+++  D+    V+
Sbjct: 3   KKKHLIFLGGAVFLALIVTLLAYNWI-----QKTATAKAKPQEMQKVVVAAFDVPWSTVL 57

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NG 119
           T +++    F +E++ +G+  D  Q      + G  V  PI   +PI   +L       G
Sbjct: 58  TKDMVRTATFLKESLPNGYYLDPAQ------IVGRTVIQPIRTNEPITEARLAPTSIRTG 111

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176
           G+++++   KRA ++ +     V G I P + VDV++  +    +   P   +VL NI V
Sbjct: 112 GVAAVITPSKRAMSVKVDKVVGVSGYIHPGNRVDVLVTLNEQRGEVTAPVTKIVLENILV 171

Query: 177 IAID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           +A     +     E+       TLE+TP + + L  A +  K+ L LR+  D    ++  
Sbjct: 172 LASGPEFNETKKGEKPANVDVITLEVTPEEGEKLALASTEGKIQLALRNFGDNEAVATRG 231

Query: 234 SDVWDV 239
           + + ++
Sbjct: 232 AKIPNL 237


>gi|90411207|ref|ZP_01219220.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
 gi|90328053|gb|EAS44374.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
          Length = 266

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 30/267 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVS------PHHVQTEEVITENPAKFINV------- 48
           K    + + +S +  L A I+A   +           +  E +T+   +   V       
Sbjct: 3   KGKIFLTLFISIMMGLGALILANNWLQSKQANLNSQTKPSEPVTQVEVQIKEVMKEEPKV 62

Query: 49  --LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             + ++  + +G  +    L    +P + V              +++ G+L R  I +GD
Sbjct: 63  PRVTAQQRIPLGTKIEAKHLSIEYYPTDLVS------TKGYETPEQVVGMLARNEIFEGD 116

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            +R E+LV  G G  L++L+    RA T+ ++    V G + P D VDV+  +  S    
Sbjct: 117 LLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGFLLPGDFVDVIYTKEKSNN-- 174

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
               VL  I+++A+D    +D+ + ++    TLELTP QA++LV A+S  +L L LR+  
Sbjct: 175 -AVTVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQAESLVTAKSKGELQLSLRNPN 233

Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           D+    ++       +     + IIK 
Sbjct: 234 DIEKIKTKRVY----RRTTDAVTIIKG 256


>gi|258405292|ref|YP_003198034.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM
           5692]
 gi|257797519|gb|ACV68456.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM
           5692]
          Length = 295

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 13/245 (5%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPH--HVQTEEVITENPAKFINVLISKGDLAVGM 59
           +L  L+ I ++ V A+   +     +        T E   E       V+++  D++ G 
Sbjct: 3   RLRALIPIALALVIAIAGSVFIYNWMQEQTTRQDTVEKAREKAPSTQEVVVAALDISAGS 62

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117
            +T  +L+   + ++N+  G   D  Q      L G +   P  K +PI   +L      
Sbjct: 63  QLTEEMLQTGQYLKKNLPPGSFTDPDQ------LLGRVALAPFKKNEPIVDHRLAPTDIK 116

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRV 176
           +GG+S+L+ KG RA ++  +    + G + P   VDV++        +     +L N+++
Sbjct: 117 SGGVSALISKGNRAVSLGGNKVLGISGFVLPGSRVDVMVTWNDPDSGEQITKRILDNVKI 176

Query: 177 IAIDHNIDSDER--VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +A    +   E          TLE+TP +A+ L   ++   L + LR+  D  P  ++ +
Sbjct: 177 LATSTKMQETESGGTAPVDVYTLEVTPEEAEILTHIRNQGSLQMALRNPTDNEPVMTDGA 236

Query: 235 DVWDV 239
              D 
Sbjct: 237 TAKDS 241


>gi|13475418|ref|NP_106982.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
 gi|14026170|dbj|BAB52768.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
          Length = 354

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 12/254 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ IV++GVF ++A ++A   ++    Q   +   N  +   V+++   L  G  
Sbjct: 1   MRANTVIMIVLAGVFGVLAVVLANIWLAN---QRSAIAQTNDIQRDTVVVAAVALKFGDT 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK---GDPIRLEKLVDRG 117
           ++ + L  VA+P   V  G      +      L G   +  +      +P+   K+   G
Sbjct: 58  LSADKLREVAWPAGAVPAGAFKTTEELLTKDVLPGAAPKQALQAIGVNEPVLATKITGPG 117

Query: 118 NG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLS 172
               LS++L +G +A ++ ++    V G + P D VDV++ R         +  V V+L 
Sbjct: 118 QRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDVLLTRTVRSDDGADQSFVDVLLQ 177

Query: 173 NIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
            +RV+A+D   D   +   V  + TLE +   A+ L  A    +LSL LR  A     ++
Sbjct: 178 GMRVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAASKGETT 237

Query: 232 EDSDVWDVQEEGKE 245
           E   + D+  E   
Sbjct: 238 ERVTLSDLTGEMPA 251


>gi|167648153|ref|YP_001685816.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31]
 gi|167350583|gb|ABZ73318.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31]
          Length = 296

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 43/295 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVG 58
           M   R+M ++++ V A+   ++  +++S             P       VL++K DLA+G
Sbjct: 1   MNPLRVMIVLIAAVSAIGLAVVMQKMMSGKAPSAPIAQASAPVGKPMTQVLVAKRDLAIG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQP-------------------------NAMQEL 93
             +T   + W  +P + +   FI +                                + +
Sbjct: 61  QRLTAADVTWQPWPSDTINAAFITNGAADPVPAKATAKAAKAVGDVAEGMIGGVTPEKAV 120

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           +G +VR PIL G+PI   K+V  G GG LS +L  GKRA  + ++  +AVGG + P D V
Sbjct: 121 EGAIVRDPILAGEPITSRKIVRGGEGGYLSVVLSPGKRAMAVPVTSETAVGGFVLPGDRV 180

Query: 153 DVVMVRS---------LSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTP 201
           DV+  R           S +      ++ N+RV+A+D     + D + +V +TATLE+ P
Sbjct: 181 DVIQTREAQSVGEGEGASGKHTIAETIVQNVRVLALDQATAAEKDAKTIVATTATLEVGP 240

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
           ++A+AL  A++   ++L LR+  DL   S     +    +E   ++I + G   N
Sbjct: 241 IEAEALTRAKAAGPVTLTLRAYTDLGGPSG----LAVRSQEASVVRINRGGETSN 291


>gi|254506783|ref|ZP_05118923.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
 gi|219550364|gb|EED27349.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
          Length = 233

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 11/215 (5%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
           F L A   A + +        E+      +   V+I+  ++  G  +    +       E
Sbjct: 2   FGLGAVFFAKQWMDRQLQPQTEL---EVVEREPVIIASQEIPAGTPIEEQHITTKLLEVE 58

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAAT 133
              +G   D +       + G +V   I  G+ +   +L   G G  L+SL+P+ KRA T
Sbjct: 59  WRNEGQFTDQN------AILGQVVATTIFPGEVLHQNRLTVPGEGSTLASLIPENKRAVT 112

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVG 192
           + ++    V G + P + VDV+     S        VL +I+V+A+D    + E + ++ 
Sbjct: 113 IRVNDVIGVAGFLLPGNRVDVLNTIKYSATSANTVTVLKDIKVLAVDQTARTKENKPIIV 172

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
              TLE++P  A+ L+ A+S  ++ L LR+  +  
Sbjct: 173 RAVTLEVSPKDAEKLLTARSKGEIQLTLRNPHEEE 207


>gi|294012240|ref|YP_003545700.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
 gi|292675570|dbj|BAI97088.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
          Length = 295

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 9/228 (3%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +A   V+  ++   E +         V+++   L  G  VT   +  V +P  +V  G  
Sbjct: 4   LAAVFVANSYLSRAEKVPPPEGGMAKVVVATVSLPFGSAVTAEKIRVVDWPANSVPPGAF 63

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISS 140
            D  Q  ++    G +V   I  G+PI   KL   G    +S++L    RA  + +S  +
Sbjct: 64  RDPIQLTSLG--KGRVVLRQIEPGEPILASKLSGEGGRATMSAVLAPEMRAVAVRVSDVA 121

Query: 141 AVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIAIDHNI-DSDERVLVGST 194
           A GG + P D VDV + R+L +      +    V+L   RVIAID N  D+ +   VG T
Sbjct: 122 AAGGFVLPGDTVDVFVTRTLQDPMGGASQQITDVLLQGTRVIAIDQNANDTSKDPAVGKT 181

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
           ATLE+  + A+ LV AQ V +L+LVLR++ D    + +   + D+++ 
Sbjct: 182 ATLEVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPAVQTVGIEDLRDG 229


>gi|304320646|ref|YP_003854289.1| CtpC protein [Parvularcula bermudensis HTCC2503]
 gi|303299548|gb|ADM09147.1| CtpC protein [Parvularcula bermudensis HTCC2503]
          Length = 253

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 15/259 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK----FINVLISKGDLA 56
           MK  RL+ ++V+      A  +   L           +   P +       V+ S  D+ 
Sbjct: 1   MKAARLLILLVAIAAGGAAFFM---LAGNDEPAVTTAVPTAPIQPRMAMAEVMFSAKDIP 57

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G +++  +++WV +P  NV + FI    Q + +  L     R+ I    PI     V  
Sbjct: 58  QGAILSEGMVKWVKWPSANVPEFFITKDDQ-DFIDNLGLRRARLRIDANQPIYGVNTVAH 116

Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
           G+ G L+S+L  G RA T  + +    GG I P D VD+       + +   + +L NIR
Sbjct: 117 GDRGMLASILTPGMRAVTARMGLEETSGGFILPGDRVDIFATGIGDDGQMETSAILRNIR 176

Query: 176 VIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           V+AID   N+  ++  L GST T EL+P Q  + + A+   +L+LVLRS+ DL+P +   
Sbjct: 177 VLAIDQVTNVTDEQTALNGSTVTFELSPAQVPSFIGARDNKQLTLVLRSVYDLSPET--G 234

Query: 234 SDVWDVQEEGKEIQIIKAG 252
             + D   E  E+ +I+ G
Sbjct: 235 MPIVDTSPE--EVVVIRFG 251


>gi|259417281|ref|ZP_05741200.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B]
 gi|259346187|gb|EEW58001.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B]
          Length = 267

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI-DDVH 85
              + +  E    E     +NV ++   L  G  +T   +  VA+PE  + +G   ++  
Sbjct: 9   AYQNALAHERSNREAAVPTVNVFVANKTLTYGEELTKENVRAVAWPENALPEGIFSEESD 68

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGG 144
              +    D   V   + K +P+   K+   G + G++S L KG RA  + + ++S V G
Sbjct: 69  LFPSDSPKDARYVLRTMEKNEPLLAVKITAPGEDAGITSRLEKGMRAFAIRVDVASGVSG 128

Query: 145 MIKPNDHVDVVMVRSLSER------KPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATL 197
            ++P D VDV        R           ++ SNI +IA+D     D    ++  T T+
Sbjct: 129 FLRPGDRVDVYWSGQPPARSGQERSGEVTRLIQSNIELIAVDQMSGGDFSNAIIARTVTV 188

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
           +  P +   L  AQS  +LSL L    D   +S  + D   +   G
Sbjct: 189 KAQPEEVARLAQAQSTGRLSLALVGAQDDTIASLVEVDQRSLFGLG 234


>gi|296284551|ref|ZP_06862549.1| Flp pilus assembly protein CpaB [Citromicrobium bathyomarinum
           JL354]
          Length = 353

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 130/270 (48%), Gaps = 15/270 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN-VLISKGDLAVGM 59
           M   +L+ ++ + V A     IA  + +          T         VL+++  L VG 
Sbjct: 1   MDRKKLVLLLAALVIAAGTAFIARSMFAGASAPEVAAATGPVEPTGPRVLVAQRSLPVGT 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           ++T + + + A+P+E V D +  D      + +L G +VR  I  G+P+    LV  G+ 
Sbjct: 61  IITQDAISYQAWPQELVRDAYFIDGEA--DVSKLLGTVVRYQITAGEPVTQGALVAPGDR 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
           G L++ L  G RA T+ ++  ++V G + P D VD++M    +E       +L N+RV+A
Sbjct: 119 GFLAAALGPGMRAITVPVNAQTSVAGFVFPGDRVDLMMTHE-TEGVKATETILRNLRVLA 177

Query: 179 IDHNIDS---DERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-----P 228
            D +      D + +V   ST TLE+TP  A+ +  AQ+V  LSL LRSIAD +      
Sbjct: 178 TDQSTSQNTVDGQTVVNGFSTVTLEVTPKIAEKIAVAQTVGTLSLSLRSIADNSTDLERA 237

Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258
            +S D  + D     +E +++     +  D
Sbjct: 238 LASGDIAIPDDATPEEEARLLARARNMPSD 267


>gi|260574617|ref|ZP_05842620.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2]
 gi|259023034|gb|EEW26327.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2]
          Length = 284

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 8/243 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           M++   + +VV    A  A  +A   +S        E          + V +    L  G
Sbjct: 1   MRMVFGLVLVVGLALAGFAVYMAQGFISQTQAELAQERAARAKAGPLVEVYVVNKPLNYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T   ++ + +P+  + +    D         +    V   + K +P+   K+ + G 
Sbjct: 61  DPLTKEDVQKIYWPQNALPETIFTDEALLFPANAVGQRFVLRQMEKFEPLLAVKVTEPGQ 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNI 174
           + GL++ L KG RA  + +  +S V G + P D+VDV    + ++         ++ S I
Sbjct: 121 DAGLTARLAKGMRAFAIKVDATSGVSGFLHPGDNVDVYWTGTANDAGVGGEMTRLIESTI 180

Query: 175 RVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           ++IA+D   + D     +V +T T+E +P +   L  AQ+  KL+L L    D + +   
Sbjct: 181 KIIAVDQMANDDRSGSAVVAATVTVEASPEEVARLAQAQATGKLALSLVGANDASVAGLV 240

Query: 233 DSD 235
           + D
Sbjct: 241 EVD 243


>gi|86137992|ref|ZP_01056568.1| CpaB family protein [Roseobacter sp. MED193]
 gi|85825584|gb|EAQ45783.1| CpaB family protein [Roseobacter sp. MED193]
          Length = 286

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 112/257 (43%), Gaps = 14/257 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   +S +   +  E           +V ++   L  G
Sbjct: 1   MRAVFGLVLIVGVALAGGAVMMAKNYISAYQTELARERANRGEVIPTTDVFVATKQLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVH---QPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
             +T + +  V +P + + +G    +     P    +L   +V   + K + +   KL +
Sbjct: 61  ERLTEDAVRKVRWPSDAIPEGAFTTLETLFPPANPGDL--RVVLRTMEKDEALLEAKLTN 118

Query: 116 RG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTV 169
            G + G++S L +G RA  + + +SS V G ++P DHVDV         S    +    +
Sbjct: 119 PGQDAGITSQLQRGMRAFAISVDVSSGVSGFLRPGDHVDVYWTGGVRDGSGGRGQEITRL 178

Query: 170 VLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           +  +I +IA+D +  ++     +  T T+ + P Q  AL  AQ+  +LSL L    D   
Sbjct: 179 IEPSIELIAVDQSASTETNGATIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTV 238

Query: 229 SSSEDSDVWDVQEEGKE 245
           +S  + +   +   G++
Sbjct: 239 ASVIEVNQRSLLGLGEQ 255


>gi|197106458|ref|YP_002131835.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
 gi|196479878|gb|ACG79406.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
          Length = 287

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---NVLISKGDLAVGM 59
             R+M +  + + +  A  +  + +     Q         A       VL++   L  G 
Sbjct: 4   SRRMMYLGAAALLSSGAVFLTQQWLQGQLSQATASARAGAAPAAAEAQVLVAAQALPPGT 63

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           ++ P+ + W A+P +    G++       A  ++ G +VR  +  G P+    +V  G+ 
Sbjct: 64  ILKPSHVRWQAWPADAPTAGYLTSAASGPA--QIAGAVVRGELQPGQPLTTTGVVQPGDR 121

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             L+++L  G RA T+++S +S V G I P D VD+V+ R + + +     VL+++RV+ 
Sbjct: 122 SFLAAVLKPGHRAVTVNVSAASGVAGFIFPGDRVDLVLSRRIGDDRHVSETVLTDVRVVG 181

Query: 179 IDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           ID    +  + V+V  TATLE+TP QA+ +     + KLSL LRS+A
Sbjct: 182 IDQRVANEKQEVVVPQTATLEVTPKQAEIVALMPELGKLSLSLRSLA 228


>gi|319782174|ref|YP_004141650.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168062|gb|ADV11600.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 344

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 11/251 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   L+ IV++GVF ++A ++    ++    Q   +      +   V+++   L  G  
Sbjct: 1   MRANTLIMIVLAGVFGVLAVVLVNIWLAG---QRSAMAQTGVVQGSTVVVAAMPLKFGDA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           ++ + L  VA+P   V  G         A            I   +PI   K+   G   
Sbjct: 58  LSADKLREVAWPAGAVPAGAFKSTKDLLAGD--GAKQALQSIGVNEPILATKITGPGQRA 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175
            LS++L +G +A ++ ++    V G + P D VD+++ R         K  V V+L +++
Sbjct: 116 TLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTARGDDGADKSFVDVLLQSMK 175

Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+AID   D   +   V  + TLE +   A+ L  A    +LSL LR  A     ++E  
Sbjct: 176 VLAIDQVADESKDSPTVVKSVTLEASTRDAQKLTLAAGAGQLSLALRQAAASKGETTERV 235

Query: 235 DVWDVQEEGKE 245
            + D+  E   
Sbjct: 236 TLSDLTGETPA 246


>gi|258621446|ref|ZP_05716480.1| Pilus assembly protein [Vibrio mimicus VM573]
 gi|262165920|ref|ZP_06033657.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223]
 gi|258586834|gb|EEW11549.1| Pilus assembly protein [Vibrio mimicus VM573]
 gi|262025636|gb|EEY44304.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223]
          Length = 250

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 16/236 (6%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       + V        +   I+  D+  G V+    L         + 
Sbjct: 19  AAVFFAKQWMDKQMTPQQAVEVVEREPVV---IAAIDIPAGSVIEQQHLTTK------LL 69

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136
           +    ++ Q +  + L G +V  PI +G+ I +++L   G G  L+SL+P+  RA T+ +
Sbjct: 70  EKSWRNISQFSDTKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+       VL +I+V+A+D    S E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           TLE+TP QA+ L++AQS  ++ L LR+     P   E+      +     + IIK 
Sbjct: 190 TLEVTPEQAEKLLSAQSKGEIQLTLRN-----PHEPEEKVAVTRRYVAPSVTIIKG 240


>gi|262171231|ref|ZP_06038909.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451]
 gi|261892307|gb|EEY38293.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451]
          Length = 250

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 16/236 (6%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       + V        +   I+  D+  G V+    L         + 
Sbjct: 19  AAVFFAKQWMDKQMTPQQAVEVVEREPVV---IAAIDIPAGSVIEQQHLTTK------LL 69

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136
           +    ++ Q +  + L G +V  PI +G+ I +++L   G G  L+SL+P+  RA T+ +
Sbjct: 70  EKSWRNISQFSDPKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+       VL +I+V+A+D    S E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           TLE+TP QA+ L++AQS  ++ L LR+     P   E+      +     + IIK 
Sbjct: 190 TLEVTPEQAEKLLSAQSKGEIQLTLRN-----PHEPEEKVAVTRRYVAPSVTIIKG 240


>gi|16127176|ref|NP_421740.1| pilus assembly protein CpaB [Caulobacter crescentus CB15]
 gi|221235977|ref|YP_002518414.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000]
 gi|7208424|gb|AAF40191.1|AF229646_3 CpaB [Caulobacter crescentus CB15]
 gi|13424572|gb|AAK24908.1| pilus assembly protein CpaB [Caulobacter crescentus CB15]
 gi|220965150|gb|ACL96506.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000]
          Length = 297

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 133/294 (45%), Gaps = 42/294 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVI------TENPAKFINVLISKGD 54
           M   RL+ ++++ V A+   ++  R +     +   ++               VL++K D
Sbjct: 1   MSPVRLLIVLIAAVSAIGLAVVLQRALGGAPAKPTGLVEAPGGPAAPGKPMTQVLVAKRD 60

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAM 90
           L VG  +    + W A+P +++   FI +   P                        +  
Sbjct: 61  LPVGTRLVATDVGWQAWPSDSINAAFITNGSAPVTPDGKVEAAKAVVAATADQMIGGDPA 120

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149
           + ++G +VR PIL G+PI   K+V  G GG LS +L  GKRA ++ ++  +AVGG I P 
Sbjct: 121 KIVEGAIVRDPILIGEPITPRKIVRGGEGGYLSVVLTPGKRAMSVPVTSDTAVGGFILPG 180

Query: 150 DHVDVVMVRSLSERKP------TVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTP 201
           D VDV+  R                 VL NIRV+A+D     + D + +V +TATLE+ P
Sbjct: 181 DRVDVLSTRDAPAAGDQGGKVMIAETVLQNIRVLALDQATAAEKDAKSIVAATATLEVGP 240

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255
           ++A+AL  A++   ++L LR+  D+   S     V         ++I + G   
Sbjct: 241 VEAEALARAKAGGPITLALRAYTDMGGPSGVTHAVAGDDS---TVRINRGGQTT 291


>gi|54302291|ref|YP_132284.1| Flp pilus assembly protein [Photobacterium profundum SS9]
 gi|46915713|emb|CAG22484.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           SS9]
          Length = 264

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 26/243 (10%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHV------QTEEVITENPAKFINV------- 48
           K    + + +S +  L A I+A   +           +  E +T+   +   V       
Sbjct: 3   KGKIFLTLFISIMMGLGALILANNWLQSKQANLNAQTKPSEPVTQVEVQIKEVMKEEPKV 62

Query: 49  --LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             ++++  + +G  +    L    +P + V              +++ G+L R  I +GD
Sbjct: 63  PRVMAQQRIPLGTKIEAKHLSIEYYPTDLV------KSKGYETPEQVVGMLARNEIFEGD 116

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            +R E+LV  G G  L++L+    RA T+ ++    V G + P D VDV+ ++  S    
Sbjct: 117 LLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGFLLPGDFVDVIYIKEKSNN-- 174

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
               VL  I+++A+D    +D+ + ++    TLELTP QA++LV A+S  +L L LR+  
Sbjct: 175 -AITVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQAESLVTAKSKGELQLSLRNPN 233

Query: 225 DLN 227
           D+ 
Sbjct: 234 DIE 236


>gi|307294423|ref|ZP_07574267.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
 gi|306880574|gb|EFN11791.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
          Length = 307

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 8/223 (3%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
            ++  ++ + E   +       V+++   L  G  VT   +  V +P  +V  G   D  
Sbjct: 22  FIANSYLSSAEKAPQADGGMAKVVVATVSLPFGSAVTAEKIRTVDWPANSVPPGAFRDPI 81

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGG 144
           Q  ++    G +V   I  G+PI   KL   G    +S++L    RA  + +S  +A GG
Sbjct: 82  QLTSLG--KGRVVLRQIEPGEPILASKLSGEGGRATMSAVLAPEMRAVAVRVSDVAAAGG 139

Query: 145 MIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNI-DSDERVLVGSTATLEL 199
            + P D VDV + R+L++     +    V+L   RVIAID N  D+ +   VG TATLE+
Sbjct: 140 FVLPGDTVDVFVTRTLTDPVAGSQQITDVLLQGTRVIAIDQNANDTSKDPAVGKTATLEV 199

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
             + A+ LV AQ V +L+LVLR++ D    + +   + D+++ 
Sbjct: 200 NQVDAQKLVLAQQVGQLTLVLRNLTDKPNPAVQTVGIEDLRDG 242


>gi|126729099|ref|ZP_01744913.1| CpaB family protein [Sagittula stellata E-37]
 gi|126710089|gb|EBA09141.1| CpaB family protein [Sagittula stellata E-37]
          Length = 288

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 11/245 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58
           M+L   + ++     A  A  +A   +  +     +   +         + +S   +A G
Sbjct: 1   MRLVFGLVLLAGIGLAGFAVYMAQNYIGAYETALVQARQQTHVSVPTKQIYVSARPIAYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T   +    +PEE + +G  D+   P   + ++  +    I   + I   K+   G 
Sbjct: 61  QEITEEDIRLAPWPEEIMPEGIFDE-ETPLLTENMEPRVALRAIDAFEAIVPSKVSQPGG 119

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVL 171
           + GL+  L  G+ A  + + ++S V G ++P D VDV     +  R P         ++L
Sbjct: 120 SAGLTHYLKPGESAFAIRVDVASGVSGFLRPGDRVDVYWTGRVDSRDPNMPRGEVTKMIL 179

Query: 172 SNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           + IR+IAID N ++D     +  T T+  T  Q   L  AQS  +L+L L S  +   + 
Sbjct: 180 AGIRLIAIDQNSEADTSGTSIARTVTVAATREQTLVLTHAQSTGQLTLSLISQNEDGEAI 239

Query: 231 SEDSD 235
           + + D
Sbjct: 240 TTEVD 244


>gi|209515950|ref|ZP_03264811.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160]
 gi|209503608|gb|EEA03603.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160]
          Length = 375

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 22/257 (8%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ IV+  + A V  II   L     V   +     P     V ++  DL  GM++ 
Sbjct: 1   MPRILKIVILVILASVGAIIFRALF----VAASQPGQARPPAMDRVRVAAADLPEGMLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNA-MQELDGVLVRVPILKGDPIRLEKLVDRGN-GG 120
            + L W   P + V  G +      +A   +L G ++R  +  G  +    ++     G 
Sbjct: 57  ESDLAWKEVPHKQVLQGALVKGDAESAEATDLKGDVLRHAVTAGTMLGTADVIPPNAPGF 116

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVVL 171
           L++ L  G RA ++ I   S   G+I+P D+VDV++ + L           R      V+
Sbjct: 117 LAAALKPGMRAISVAIDDVSGNAGLIQPGDYVDVLLTQQLDGPVHAPQNTARSVESETVV 176

Query: 172 SNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-- 224
           + +RV+A+         D+ +      T T E+TP  A+ +  A  +  LSL LRS A  
Sbjct: 177 NRVRVLAVGSIFQRPKADAADANTRARTVTFEVTPHTAQVIAVATHLGSLSLALRSFATS 236

Query: 225 DLNPSSSEDSDVWDVQE 241
           D NP    +  +     
Sbjct: 237 DRNPPVIANETLPQTPP 253


>gi|157375509|ref|YP_001474109.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis
           HAW-EB3]
 gi|157317883|gb|ABV36981.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis
           HAW-EB3]
          Length = 274

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 20/248 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S +F + A  +A   +  +          NP    +V+     + +G +
Sbjct: 1   MNNKTILFVLLSLIFGVAAVFLAQSWLKTN------TEAVNPQVSTSVITMATLVPLGTI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L     P   + +  I         +  +G++V+  +  G+ +R E++  +G G 
Sbjct: 55  LERKHLILTPMPNTVIPETAIKT------FEGAEGMVVKQNLYAGEVLRSERITVKGEGS 108

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VDV+ +     R     VVL+N++++AI
Sbjct: 109 TLASLISPQMRAVTIRVNDVVGVAGFLLPGNRVDVLNLFKRGGRLQ-TDVVLANVKILAI 167

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE +  +    TLEL   QA+ L+ A+   KL L LR+  D     S   ++  
Sbjct: 168 DQRSSNDENKPKLVRAVTLELNLEQAEVLMIAKGRGKLQLALRNPND-----STKVELAL 222

Query: 239 VQEEGKEI 246
           + E    I
Sbjct: 223 INEAKDTI 230


>gi|83943940|ref|ZP_00956397.1| CpaB family protein [Sulfitobacter sp. EE-36]
 gi|83845187|gb|EAP83067.1| CpaB family protein [Sulfitobacter sp. EE-36]
          Length = 287

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 11/246 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58
           M++   + ++     A  A  +A   +S +    Q  +         + V ++ G L  G
Sbjct: 1   MRMVFGLVLLAGIALAGGAVYLAKGRISEYQRANQQAQEALAQIVPTVGVYVANGPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T   +  V +PE  + +G   +          D  +V   + K + I   K+ + G 
Sbjct: 61  QRLTREDVRQVNWPENAIPEGTFIEEAALFPENSDDLRVVLRAMEKDEAIMAVKVTEPGA 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVV 170
           + GL+S L +G RA  + + +SS V G ++P D VDV     ++       +      ++
Sbjct: 121 DTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINRGGNDRADTGDVTKLI 180

Query: 171 LSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            + +++IAID +   +     + +T T+ + P Q  AL  AQS   LSL L    D   +
Sbjct: 181 EAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTGDLSLSLVGAEDDTVA 240

Query: 230 SSEDSD 235
              + D
Sbjct: 241 GEIEVD 246


>gi|116748929|ref|YP_845616.1| SAF domain-containing protein [Syntrophobacter fumaroxidans MPOB]
 gi|116697993|gb|ABK17181.1| SAF domain [Syntrophobacter fumaroxidans MPOB]
          Length = 292

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 125/267 (46%), Gaps = 14/267 (5%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPH-HVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +   +  + ++ V ALVA ++  + V     VQT  V  +     + V ++  DL  G  
Sbjct: 3   RFRAIFPLALAIVLALVASVVVYKWVQMKTGVQTTVVTEKAEPGGVQVALASADLPWGTK 62

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +T  +++   +P +++  G+  D        +++G ++  P+ +G+ +   KL       
Sbjct: 63  LTREMVKMAEYPPKHLPAGYFSDPA------KIEGRVLITPVKQGEQLLESKLAPLSVTT 116

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRV 176
           GG+S+++  GKRA  +       + G I+P + VDV++    ++ K   T  VVL N++V
Sbjct: 117 GGVSAVVSVGKRAIAVAGDKVIGLAGFIQPGNFVDVLVTIRDTQEKTPSTSKVVLENVKV 176

Query: 177 IAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +A    ID             TLE+TP +A+ L  A S+ KL   LR++ D     +  +
Sbjct: 177 LATGTVIDKKAGTEPGPVDVFTLEVTPEEAERLAFAASLGKLHFALRNVTDTEVVYTMGT 236

Query: 235 DVWDVQEE-GKEIQIIKAGVIVNKDGE 260
            + D  +     ++++ A  +V  + E
Sbjct: 237 TIADALDAYRPRMKMVSAQPVVKSEPE 263


>gi|83954513|ref|ZP_00963224.1| CpaB family protein [Sulfitobacter sp. NAS-14.1]
 gi|83840797|gb|EAP79968.1| CpaB family protein [Sulfitobacter sp. NAS-14.1]
          Length = 287

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 11/246 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58
           M++   + ++     A  A  +A   +  +    Q  +         + V ++ G L  G
Sbjct: 1   MRMVFGLVLLAGIALAGGAVYLAKGRIGEYQRANQQAQEALAQIVPTVGVYVANGPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T   +  V +PE+ + +G   +          D  +V   + K + I   K+ + G 
Sbjct: 61  QRLTREDVRQVKWPEDAIPEGTFIEEAALFPENSDDLRVVLRAMEKDEAIMAAKVTEPGA 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVV 170
           + GL+S L +G RA  + + +SS V G ++P D VDV     ++       +      ++
Sbjct: 121 DTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINRGGNDRADTGDVTKLI 180

Query: 171 LSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            + +++IAID +   +     + +T T+ + P Q  AL  AQS   LSL L    D   +
Sbjct: 181 EAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTGDLSLSLVGAEDDTVA 240

Query: 230 SSEDSD 235
              + D
Sbjct: 241 GEIEVD 246


>gi|255262747|ref|ZP_05342089.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62]
 gi|255105082|gb|EET47756.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62]
          Length = 282

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 7/246 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+    + +V+    A  A  +A   +S + ++    E         +++  +K  L  G
Sbjct: 1   MRAVFGLVLVLGVALAGFAVYMAKGYISDNQLRLAQAEAARAAMVPTVDIFAAKNPLVYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
            ++T   +  + +PE ++  G    + +     +    +V  PI   + I   K+   G 
Sbjct: 61  QMLTIEDVHHIRYPEASLPPGAFRTIEELFPNGDEKLRVVLRPIEPNEVILPVKVTSPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNI 174
           + GL+  L +G RA  + + +SS V G ++P D VDV      +    R+    ++ S++
Sbjct: 121 DAGLTQRLAQGMRAFAIRVDVSSGVSGFVRPGDRVDVYWSGVANVGQRRQDLTRLIQSSV 180

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           ++IAID + D ++    +  T T+E++ ++  AL  AQ+   LSL L    D       +
Sbjct: 181 KIIAIDQSADGNQSEARIARTVTVEVSQVEVAALAQAQATGNLSLALVGYGDNTDVGIVE 240

Query: 234 SDVWDV 239
            D  ++
Sbjct: 241 IDTQEL 246


>gi|77462454|ref|YP_351958.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           2.4.1]
 gi|221638317|ref|YP_002524579.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides KD131]
 gi|332560338|ref|ZP_08414660.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N]
 gi|77386872|gb|ABA78057.1| Putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           2.4.1]
 gi|221159098|gb|ACM00078.1| Flp pilus assembly protein CpaB precursor [Rhodobacter sphaeroides
           KD131]
 gi|332278050|gb|EGJ23365.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N]
          Length = 274

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 102/251 (40%), Gaps = 9/251 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+L     +++    A  A  +A   +S   +    E    +     + V ++   L  G
Sbjct: 1   MRLVFAFVLLIGIALAGFAVYMAQGYISQTQIALEKERAARKKLGPMVEVFVTNKPLNYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T   +  + +P   + +                   V   + K +P+   K+   G 
Sbjct: 61  APLTRADVRTIMWPANALPETIFQK-ESDLFPDPAKPRYVLRQMEKFEPVLGVKVTAPGI 119

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
             G+   L  G RA  + + ++S V G ++P D VDV    S S  + T  ++   I ++
Sbjct: 120 EAGI--RLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGE-TTRLIEKTIPIV 176

Query: 178 AIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D   ++D     ++  T T+E++P Q   L  AQ+  +LSL L    D   +++   D
Sbjct: 177 AVDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEATATPVD 236

Query: 236 VWDVQEEGKEI 246
             ++  E  ++
Sbjct: 237 TRNLIGEPDKV 247


>gi|126461332|ref|YP_001042446.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126102996|gb|ABN75674.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 274

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 102/251 (40%), Gaps = 9/251 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+L     +++    A  A  +A   +S   +    E    +     + V ++   L  G
Sbjct: 1   MRLVFAFVLLIGIALAGFAVYMAQGYISQTQIALEKERAARKKLGPMVEVFVTNKPLNYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T   +  + +P   + +                   V   + K +P+   K+   G 
Sbjct: 61  APLTRADVRTIMWPANALPETIFQKESDL-FPDPAKPRYVLRQMEKFEPVLGVKVTAPGI 119

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
             G+   L  G RA  + + ++S V G ++P D VDV    S S  + T  ++   I ++
Sbjct: 120 EAGI--RLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGE-TTRLIEKTIPIV 176

Query: 178 AIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D   ++D     ++  T T+E++P Q   L  AQ+  +LSL L    D   +++   D
Sbjct: 177 AVDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEATATPVD 236

Query: 236 VWDVQEEGKEI 246
             ++  E  ++
Sbjct: 237 TRNLIGEPDKV 247


>gi|46580523|ref|YP_011331.1| hypothetical protein DVU2118 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449942|gb|AAS96591.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234262|gb|ADP87116.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris RCH1]
          Length = 272

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 113/252 (44%), Gaps = 18/252 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ T ++ ++ + V ALVAG++  R V  + V  +          + ++++  D+  G  
Sbjct: 1   MRRTAVIQVIAALVLALVAGVLVFRFVQVNRVAQQT----QQPPGVVLVVAAVDMEKGAK 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +  + L+   F   +   G   D       + L G ++  P+  G+ I   +L+     +
Sbjct: 57  IRADQLKTSTFLSASAPPGGFTDA------KSLVGRVLATPVTTGEVITETRLLPADATS 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIR 175
           GG+S+++  G RA  +  +    + G I+P + VD+++      R+       V+L+ I+
Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170

Query: 176 VIAIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+A    +     D         TLE+TP QA+ L  A S  +L   LR+ AD  P  + 
Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230

Query: 233 DSDVWDVQEEGK 244
            +DV     + +
Sbjct: 231 GTDVPATLRQLQ 242


>gi|126737255|ref|ZP_01752990.1| CpaB family protein [Roseobacter sp. SK209-2-6]
 gi|126721840|gb|EBA18543.1| CpaB family protein [Roseobacter sp. SK209-2-6]
          Length = 285

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 9/244 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT--EEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A + +S H      E            + ++   L  G
Sbjct: 1   MRAVFGLVLIVGVALAGGAVMMAKKYISAHQAALAHERANRAEVIPTTEIYVAVKQLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFID-DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
             +T   ++ V +P E++ +G  + +       +  D  +V   I   + I   K+   G
Sbjct: 61  ERLTAEAVKKVRWPTESLPEGAFEMEAELFPTAKPSDQRVVLRMIEPNEAILAVKVTKPG 120

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLS 172
            + G++S L +G RA  + + ++S V G ++P D VDV        +  +      ++ S
Sbjct: 121 EDAGITSQLQRGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGVARGASGQDGEMTRLIES 180

Query: 173 NIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +I +IA+D +  +D    ++  T T+ + P Q  AL  AQ+  +LSL L    D   +S+
Sbjct: 181 SIELIAVDQSASTDVNGAMIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTVASA 240

Query: 232 EDSD 235
            + D
Sbjct: 241 IEVD 244


>gi|260771479|ref|ZP_05880404.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972]
 gi|260613605|gb|EEX38799.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972]
 gi|315181061|gb|ADT87975.1| Flp pilus assembly protein CpaB [Vibrio furnissii NCTC 11218]
          Length = 249

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 17/248 (6%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++  ++S +F L A   A + +        EV        +    +  D+    V+    
Sbjct: 7   ILLFLLSVLFGLGAVFFAKQWMDRQVQPQTEVEVVERVPVVV---ASRDIPASTVIEEQY 63

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124
           L      +  + +    +        E+ G +    I   + I  ++L   G G  L++L
Sbjct: 64  LTTRLLEKSWMTENQFSEP------TEVIGKIAESDIYPNEIIVAQRLSIPGEGATLAAL 117

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           +P+ KRA T+ ++    V G + P + VDV+     S+     T +L +IRV+A+D    
Sbjct: 118 IPEDKRAVTIRVNDVIGVAGFLLPGNKVDVLNTIQYSKTSANTTTILKDIRVLAVDQTAK 177

Query: 185 SDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
           + E + ++    TLE++P +A+ L++A+S   + LVLR+     P + E+  V       
Sbjct: 178 TQENKPIIVRAVTLEVSPKEAEKLLSAKSKGDIQLVLRN-----PHAVEEKVVRRYVPP- 231

Query: 244 KEIQIIKA 251
             + IIK 
Sbjct: 232 PSVTIIKG 239


>gi|261252086|ref|ZP_05944659.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
 gi|260935477|gb|EEX91466.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
          Length = 247

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 11/218 (5%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
           S VF L A   A + +        EV        I    +  ++  G V+    +     
Sbjct: 13  SIVFGLGAVFFAKQWMDRQLQPQVEVEVVEREPVIV---AAQEIFAGSVIEEQHVT---- 65

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKR 130
               + +    D  Q    +EL G +    I  G+ I   +L   G G  L+SL+P+ KR
Sbjct: 66  --SRLLEKDWRDELQFTKAEELVGQVAATTIYPGEIIHPNRLSSSGEGSTLASLIPENKR 123

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RV 189
           A T+ ++    V G + P + VD++      +   + + VL  I+V+A+D    S E + 
Sbjct: 124 AVTIRVNDVIGVAGFLLPGNKVDILNTVKYGKNSASTSTVLKEIKVLAVDQTARSKENKP 183

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           ++    TLE+TP QA+ L++AQS   + L LR+  +  
Sbjct: 184 VIVRAVTLEVTPRQAEKLLSAQSRGNIQLTLRNPHEEE 221


>gi|320155488|ref|YP_004187867.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O]
 gi|319930800|gb|ADV85664.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O]
          Length = 248

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 11/213 (5%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       ++V        +   I+  ++  G V+ P  L         + 
Sbjct: 19  AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTK------LL 69

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136
           +    ++ Q    +EL G +V   I  G+ I  ++L   G G  L++L+P+ KRA T+ +
Sbjct: 70  EKSWRELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+       VL +I+V+A+D    + E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTISYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           TLE+TP QA+ L++A+S  ++ L LR+  +   
Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPEE 222


>gi|120602160|ref|YP_966560.1| SAF domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120562389|gb|ABM28133.1| SAF domain [Desulfovibrio vulgaris DP4]
          Length = 272

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 18/252 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ T ++ ++ + V ALVAGI+  R V  + V  +          + +++S  D+  G  
Sbjct: 1   MRRTAVIQVIAALVLALVAGILVFRFVQVNRVAQQT----QQPPGVVLVVSAVDMEKGAK 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +  + L+   F   +   G   D       + L G ++  P+  G+ I   +L+     +
Sbjct: 57  IRADQLKTSTFLSASAPPGGFTDA------KSLVGRVLATPVTTGEVITETRLLPADATS 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIR 175
           GG+S+++  G RA  +  +    + G I+P + VD+++      R+       V+L+ I+
Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170

Query: 176 VIAIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+A    +     D         TLE+TP QA+ L  A S  +L   LR+ AD  P  + 
Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230

Query: 233 DSDVWDVQEEGK 244
            +DV     + +
Sbjct: 231 GTDVPATLRQLQ 242


>gi|239814525|ref|YP_002943435.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
 gi|239801102|gb|ACS18169.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
          Length = 280

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  D+ +G  V P +L  V +P  ++  G   D       + L+  +V+V +L+G+
Sbjct: 38  KVVVAAVDIELGSRVNPQMLSLVDWPSGSLPAGSFKDA------KSLEDRVVKVGVLRGE 91

Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161
            I   KL   G  GGLS+++  GKRA T+ ++    V G   P ++VDV++         
Sbjct: 92  AILEGKLAPVGTQGGLSAVIASGKRAMTVRVNDVVGVAGFALPGNYVDVMVNAQQDKNRG 151

Query: 162 -ERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            E +     VL  + V+A+    + D+ +  V S  TLEL+   ++ L  A+SV  LSLV
Sbjct: 152 EEGRQISKTVLEKVLVLAVAQEANRDDTKPKVVSAVTLELSLEDSEKLDLARSVGTLSLV 211

Query: 220 LRSIADLNPSSSEDSDVWDVQEE 242
           LR+  D    ++       +  E
Sbjct: 212 LRNQMDKTTVATAGITKGQLFGE 234


>gi|118581114|ref|YP_902364.1| SAF domain-containing protein [Pelobacter propionicus DSM 2379]
 gi|118503824|gb|ABL00307.1| SAF domain protein [Pelobacter propionicus DSM 2379]
          Length = 291

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 15/220 (6%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
           +++       K   ++++  D+ VG  +    L+ +A+P  ++  G   D       + L
Sbjct: 30  SKKSKETEAGKGKGIVVASADIPVGSKLNTTHLKMMAWPATSIPPGSFTDT------KAL 83

Query: 94  DGVLVRVPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
              +   PI  G+P+   KL+      G G ++ ++P G RA T+ ++  + V G + P+
Sbjct: 84  IDRISIRPIGPGEPLTEAKLMPRDGAPGAGIMTYIIPDGHRAVTVAVNEVAGVAGFLSPH 143

Query: 150 DHVDVVMV----RSLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQA 204
           + VDVV+      S         +VL N+ ++A     +  D + +V  T T++LTP  A
Sbjct: 144 NKVDVVLTTIPPGSNDPNATISKIVLQNVPILATGQITEQKDGKPVVVPTVTIDLTPEDA 203

Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           + LV A S   L ++LR I D     S  + +  V    +
Sbjct: 204 EKLVVASSKGSLQMLLRGIRDSALVESRGATIAKVLGAVR 243


>gi|27365105|ref|NP_760633.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
 gi|27361251|gb|AAO10160.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
          Length = 248

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 11/213 (5%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       ++V        +   I+  ++  G V+ P  L         + 
Sbjct: 19  AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTK------LL 69

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136
           +    ++ Q    +EL G +V   I  G+ I  ++L   G G  L++L+P+ KRA T+ +
Sbjct: 70  EKSWRELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+       VL +I+V+A+D    + E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           TLE+TP QA+ L++A+S  ++ L LR+  +   
Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPEE 222


>gi|322419945|ref|YP_004199168.1| Flp pilus assembly protein CpaB [Geobacter sp. M18]
 gi|320126332|gb|ADW13892.1| Flp pilus assembly protein CpaB [Geobacter sp. M18]
          Length = 308

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 114/221 (51%), Gaps = 13/221 (5%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            +E+      +   ++++  D+ +G  ++   L+  ++P++++  G   DV      + L
Sbjct: 30  QKEMDMTKAVQPQTLVVAAADIPIGGTISEPQLKTTSWPKDSIPPGSAADV------KSL 83

Query: 94  DGVLVRVPILKGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
            G +   PI  GD +  +KL  +    G+G ++ ++P G RA T+ ++  + V G I PN
Sbjct: 84  VGRVAIRPISNGDAVTEQKLKPKAGAAGSGFMTYIVPLGHRATTVAVNEVAGVAGFITPN 143

Query: 150 DHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKA 206
           D +DVV+   L  S+++    ++L N+ V+A     +  E + +V  T TL+LTP  A+ 
Sbjct: 144 DRIDVVLTTQLPGSQKENISKIILQNVPVLATGQITEQKEGKPVVVPTVTLDLTPEDAEK 203

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           LV A S   L L+LR+IAD  P +++ + +  V       +
Sbjct: 204 LVLAGSKGSLQLLLRNIADSAPLNAKGATIAKVLAGTPPPE 244


>gi|37680845|ref|NP_935454.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
 gi|37199594|dbj|BAC95425.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
          Length = 248

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 11/213 (5%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       ++V        +   I+  ++  G V+ P  L         + 
Sbjct: 19  AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTK------LL 69

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136
           +    ++ Q    +EL G +V   I  G+ I  ++L   G G  L++L+P+ KRA T+ +
Sbjct: 70  EKSWRELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+   +   VL +I+V+A+D    + E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSASTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           TLE+TP QA+ L++A+S  ++ L LR+  +   
Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPEE 222


>gi|21673268|ref|NP_661333.1| hypothetical protein CT0429 [Chlorobium tepidum TLS]
 gi|21646356|gb|AAM71675.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 278

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 115/246 (46%), Gaps = 19/246 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R + +V++     +   IA R +S                  +V+I +  +A G  + 
Sbjct: 1   MKRPIFVVIALTLGAMTAFIAARWMSGPKASGP-----------SVVIVEQPIAAGRPIL 49

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121
              ++ +++    V               ++ G +  VP++ G+P+   KL   G  GGL
Sbjct: 50  AGQIKAISWSGSVVPQEAFSRTA------DVVGRIALVPMIPGEPVLPGKLAPIGATGGL 103

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           SS++P GKRA ++ ++    V G   P  +VD+++       +P   +VLS ++V+A++ 
Sbjct: 104 SSIIPAGKRAISVRVNDVVGVAGFALPGSYVDILVSGRDVSGQPFSRIVLSKVKVLAVEQ 163

Query: 182 -NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
             +   ++  V +  TLEL+P +++ L  A+++  LSLVLR+  D    +S    + DV 
Sbjct: 164 DTVAEKDKPKVVNAVTLELSPQESEKLDLARNIGALSLVLRNELDTTVVNSVGVRLSDVV 223

Query: 241 EEGKEI 246
              + +
Sbjct: 224 YPQRGV 229


>gi|253701799|ref|YP_003022988.1| Flp pilus assembly protein CpaB [Geobacter sp. M21]
 gi|251776649|gb|ACT19230.1| Flp pilus assembly protein CpaB [Geobacter sp. M21]
          Length = 291

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 108/210 (51%), Gaps = 13/210 (6%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            +EV +    +   ++++  D+ +G  +TP  L+  ++P++++  G   D+      + +
Sbjct: 30  QQEVKSAKAIQPQRIVVAAADIPIGTAITPAQLKVTSWPKDSIPPGSARDI------EAV 83

Query: 94  DGVLVRVPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
              +   PI  GD +   KL       G G ++ ++P+G RA T+ ++  + V G + P+
Sbjct: 84  ANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPS 143

Query: 150 DHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKA 206
           D VDV++      +E++    +VL N+ ++A     D  E + +V  T TL+L P  A+ 
Sbjct: 144 DRVDVIVTTPLPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEK 203

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           LV + S   L L+LR+I+D++   S  + +
Sbjct: 204 LVLSASKGSLQLLLRNISDISHVDSRGATI 233


>gi|197117447|ref|YP_002137874.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
 gi|197086807|gb|ACH38078.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
          Length = 291

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 109/210 (51%), Gaps = 13/210 (6%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            +EV +   A+   ++++  D+ +G  +TP  L+  ++P++++  G          ++ +
Sbjct: 30  QQEVKSAKAAQPQRIVVAAVDIPIGTAITPAQLKVASWPKDSIPPG------SARGIEAV 83

Query: 94  DGVLVRVPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
              +   PI  GD +   KL       G G ++ ++P+G RA T+ ++  + V G + P+
Sbjct: 84  ANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPS 143

Query: 150 DHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKA 206
           D VDV++   +  +E++    +VL N+ ++A     D  E + +V  T TL+L P  A+ 
Sbjct: 144 DRVDVIVTTPVPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEK 203

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           LV + S   L L+LR+I+D +   S+ + +
Sbjct: 204 LVLSASKGSLQLLLRNISDSSHVDSKGATI 233


>gi|114568969|ref|YP_755649.1| Flp pilus assembly CpaB [Maricaulis maris MCS10]
 gi|114339431|gb|ABI64711.1| Flp pilus assembly CpaB [Maricaulis maris MCS10]
          Length = 278

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 19/231 (8%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
             + +L ++ D+ +G  ++     W A+P+E +  G+I + ++   + +  G +VR PI 
Sbjct: 42  PAVRILAARRDVEIGERISAADFYWQAWPDEALAPGYIVE-NRGQTIADFAGSVVRAPIS 100

Query: 104 KGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----- 157
           +G+PI   +LV  G+ G ++++L  G RA  + IS  +  GG I PND VDV++      
Sbjct: 101 QGEPITGRRLVQPGDAGFMAAVLTPGMRAVAVPISAETGAGGFILPNDRVDVIVSFEEET 160

Query: 158 --RSLSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
             R  + R      ++ N RV+AID   + ++D+ V VG TATLELTP QA+A+  A + 
Sbjct: 161 EGRRGAGRAFVARTIVENARVLAIDQSFSSEADDEVAVGETATLELTPDQARAVSVAVAR 220

Query: 214 AKLSLVLRSIADLNPSS--------SEDSDVWDVQEEGKEIQIIKAGVIVN 256
            +++LVLRS+ D + +          E       +     + +I+ G    
Sbjct: 221 GEIALVLRSLTDNSGAPVLVSGGELPEAPSQSFQERRSSSVTLIRYGRAQQ 271


>gi|146276365|ref|YP_001166524.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554606|gb|ABP69219.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 274

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 107/255 (41%), Gaps = 9/255 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58
           M+   ++ +++    A  A  +A   +S   V  E+           + V ++   L  G
Sbjct: 1   MRFVFVLVLLLGLGLAGSAVYMAQGYISQTQVALEKEREARKRLGPMVEVFVTNKPLNYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             ++   ++ + +P   + +    D       +      V   + K +P+   K+ + G 
Sbjct: 61  APLSREDVQKILWPANALPETIFKD-ETALFPETGKPRYVLRQMEKFEPVLAVKVTEPGV 119

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
             GL   L  G RA  + + ++S V G ++P D VDV    + +  + T  ++   I ++
Sbjct: 120 EAGL--RLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGAGANGE-TTRLIEKTIPIV 176

Query: 178 AIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D   ++D     ++  T T+E++P Q   L  AQ+  +LSL L    D   + +   D
Sbjct: 177 AVDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEADAAPVD 236

Query: 236 VWDVQEEGKEIQIIK 250
              +  E   I +I+
Sbjct: 237 TRILIGEPDRIVVIE 251


>gi|78357402|ref|YP_388851.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219807|gb|ABB39156.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 272

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 22/247 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL--ISKGDLAVG 58
           MK + L+ I V+ V AL AG +  R++           T  P K  +V+  ++  D+  G
Sbjct: 1   MKKSSLIQIAVALVLALGAGALVFRMM------QAPARTAQPPKVASVMLAVAAADMTKG 54

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +    +    F  +    G        ++  EL G ++   +  G+PI   +LV+   
Sbjct: 55  TRIRAEQITMAEFLLQTAPAGAF------SSADELTGRVLASAVTAGEPITPARLVEDTV 108

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSN 173
             GG+S+++  GKRA  +  +    + G I+P +HVDV++    + R   K     VL N
Sbjct: 109 RYGGVSTMISPGKRAVAVKGNNVLGMAGFIRPGNHVDVLVTIDDNRRPQDKAVTKTVLEN 168

Query: 174 IRVIAIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           IRV+A    ++    D         TLE+ P + + L  A S  ++   LR+ AD +   
Sbjct: 169 IRVLATGTELEQQGDDTATSPVDIYTLEMLPREVEVLSLAASRGEVHFSLRNPADTDSVK 228

Query: 231 SEDSDVW 237
           +  +DV 
Sbjct: 229 TAGTDVP 235


>gi|134299960|ref|YP_001113456.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134052660|gb|ABO50631.1| SAF domain protein [Desulfotomaculum reducens MI-1]
          Length = 234

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 19/236 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+    +  +++ +F LVA     + +             +   F  V++    L    +
Sbjct: 1   MRNK--LIFILAIIFGLVAAFGVYQYLGHLKQSY-----RSSGNFKQVVVPTQPLGPKTL 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +T  +++    P E +  G         A Q++ G + R  +   +PI L ++      +
Sbjct: 54  ITDKMVKVKDIPVELIQPG------TAIAPQDVVGKITRSELYPEEPIMLNRIYKDSNTD 107

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTVTVVLSNIRVI 177
           G L+ L+P+G+RA T+ +   S V G+++P DHVD+++      E+    T++L NI+V+
Sbjct: 108 GDLALLIPEGQRALTVAVDDVSGVAGLLQPGDHVDIIVTFDYEGEQTSLSTLLLQNIQVL 167

Query: 178 AIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           A+  ++D+    E+     T TL + P QA  L  A     + L+LRS  D   ++
Sbjct: 168 AVGQSLDNTPKAEKKTSSQTVTLSVQPGQATPLTLATERGSIRLMLRSPKDAGTAN 223


>gi|116626780|ref|YP_828936.1| SAF domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229942|gb|ABJ88651.1| SAF domain [Candidatus Solibacter usitatus Ellin6076]
          Length = 309

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 119/246 (48%), Gaps = 21/246 (8%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  + +    + V AL+                   +     K + V+++  D+A+G ++
Sbjct: 3   RQKKFLLFGAAWVSALLLTWFYY----------ANAVAPKQEKTLRVVVASRDMAIGTLL 52

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
             + L+ V +PE+++  G +        +Q  +  +V VP+   +P+   KL D     G
Sbjct: 53  KKSDLKVVNYPEKDIPKGAV------FTLQGAENRVVMVPMNTNEPVLQGKLSDTTTVEG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           ++S + KG RA ++ ++  + V G+I+P  HVDV+  R  S  + T + +L N+RVI+  
Sbjct: 107 VASTIEKGYRAVSVQVTDVTGVAGLIQPGSHVDVLFTRPGSMAEATTSTILQNVRVISTG 166

Query: 181 HNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
            +I +    D R     T TL LTP +A+ L  A++  ++ L LR+  DLN  +S +   
Sbjct: 167 RSITAGQVVDPRAPKSPTVTLVLTPDEAQKLELAKNQGRIGLSLRNPLDLNRDASTEPLT 226

Query: 237 WDVQEE 242
            +V + 
Sbjct: 227 TEVLDP 232


>gi|294012432|ref|YP_003545892.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
 gi|292675762|dbj|BAI97280.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
          Length = 338

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59
           M   +++ +V + + A+   ++A  ++S          +    A   +VL++   L VG 
Sbjct: 1   MDAKKIVLLVGALIIAVTTALLARNMLSSSSAPPAGASSMPVEADQPHVLVATKALPVGT 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           ++      +  +P++ V   +   +      Q+L G ++R  I  G P+ L  ++  G  
Sbjct: 61  ILDAESFRFQPWPKDLVEQAYY--IKGQADPQKLVGSVIRTAISAGQPMTLGSVIKPGER 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSN 173
           G L++ L  G RA T+ +S  ++V G + P D VD+V+ +S+S             +L N
Sbjct: 119 GFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLVLTQSVSGGGEGEPLKVSETILRN 178

Query: 174 IRVIAIDHNIDS---DERVLV--GSTATLELTPMQAKALVAAQSVA 214
           +RV+A D  +D+   D + +V   S  T+E+TP  A+ +  AQ++ 
Sbjct: 179 LRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224


>gi|89068016|ref|ZP_01155433.1| CpaB family protein [Oceanicola granulosus HTCC2516]
 gi|89046255|gb|EAR52312.1| CpaB family protein [Oceanicola granulosus HTCC2516]
          Length = 281

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 5/256 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A  +A   +     Q   E  +       + V      +  G
Sbjct: 1   MRAVFGLVLIVGVGLAGFAVYMAQGYLQDTQAQLARERAVAAQATPTVEVYAVTRQIGYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +TP+ +  V + E  + DG      +     +    +V  P+   +P+   K+ + G 
Sbjct: 61  EQLTPDDVTLVKYAEPFLPDGVFRAEEELFPEGDTQLRVVLRPMEVNEPVLAVKVTEPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRV 176
           + G++S L +G RA  + + ++S V G ++P D VD+    R+    +    ++ SN+ +
Sbjct: 121 DAGITSRLGRGMRAFAIRVDVASGVSGFLRPGDKVDIYWTGRNSRGGEEVTKLIESNVNL 180

Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           IAID + D       +  T T+E+TP Q  AL  AQS  +LSL L    D   + + + D
Sbjct: 181 IAIDQSADGSALNTTIARTVTVEITPQQVAALAQAQSTGRLSLSLVGTNDDTVAEAIEVD 240

Query: 236 VWDVQEEGKEIQIIKA 251
              +    ++ Q+++A
Sbjct: 241 QRRLLGIPEQQQVVEA 256


>gi|159043679|ref|YP_001532473.1| SAF domain-containing protein [Dinoroseobacter shibae DFL 12]
 gi|157911439|gb|ABV92872.1| SAF domain protein [Dinoroseobacter shibae DFL 12]
          Length = 280

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 5/231 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58
           M+L   + +++    A  A ++A      +   V  ++         + V +    +  G
Sbjct: 1   MRLVFGLVLLLGVGLAGFAVMMAKDRFDQYQTVVAKQQQKLAAAVDVVEVYVMDTPIRYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +  + +  V +P + + +G            E         +   +P+   K+ + G 
Sbjct: 61  EKIGKDDVRKVRWPADALPEGAFQTEEGLFPDAEGRLRTATRAMEANEPVLAVKVTEPGQ 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           + G+SS L KG RA  + ++++S V G ++P D VDV    S S+ +    ++ S++++I
Sbjct: 121 DAGVSSRLGKGMRAFAISVTVTSGVSGFLRPGDRVDVYWSGS-SKGQDVTKLIQSSMQII 179

Query: 178 AIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
            ID N D D     +  T T+E TP Q   L  AQ    LSL L   AD  
Sbjct: 180 GIDQNADMDRTAPTIARTVTVEATPQQVAGLAQAQRTGSLSLSLVGAADDA 230


>gi|307293449|ref|ZP_07573295.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
 gi|306881515|gb|EFN12731.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
          Length = 338

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59
           M   +++ +V + + A+   ++A  ++S          +    A   +VL++   L VG 
Sbjct: 1   MDAKKIVLLVGALIIAVTTALLARNMLSSSSAPQASASSMPVEADQPHVLVATKALPVGT 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           ++      +  +P+E V   +       +  Q+L G ++R  I  G P+ L  ++  G  
Sbjct: 61  ILDAESFRFQPWPKELVEQAYYLKGQ--SDPQKLVGSVIRTAISAGQPMTLGSVIKPGER 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSN 173
           G L++ L  G RA T+ +S  ++V G + P D VD+++ +S+S             +L N
Sbjct: 119 GFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLMLTQSVSGGGDGEPLKVSETILRN 178

Query: 174 IRVIAIDHNIDS---DERVLV--GSTATLELTPMQAKALVAAQSVA 214
           +RV+A D  +D+   D + +V   S  T+E+TP  A+ +  AQ++ 
Sbjct: 179 LRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224


>gi|308050060|ref|YP_003913626.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799]
 gi|307632250|gb|ADN76552.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799]
          Length = 288

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 113/249 (45%), Gaps = 17/249 (6%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           +  L  +++S  F + A ++A   +           ++       V+     +  G ++ 
Sbjct: 1   MRSLFFVLISIGFGIGAVLLAQNWLKQGQP------SDIDDNRQPVMTMAISVPSGTIIQ 54

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-L 121
              L   + P   V D  +         +++ G++ + P+++GD +  +KLV +G G  L
Sbjct: 55  EKHLVLKSVPPGLVPDEVLSKP------EQVVGMVAKFPLVEGDFLSRQKLVPKGEGSVL 108

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVIA 178
           +SL+    RA T+ ++    V G + P + VDV++    R  ++      VVLSN++V+A
Sbjct: 109 ASLIAPNMRAVTIRVNDVVGVAGFLLPGNRVDVLVTLAKRRSADETAQTEVVLSNLKVLA 168

Query: 179 IDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           +D   + D  + ++    TLE+T  QA+ L++A+S   + L LR+  D    +    +  
Sbjct: 169 VDQRANQDSNQPVLVRAVTLEVTLEQAEELMSARSRGNIQLALRNPNDDVEVAVASDEAA 228

Query: 238 DVQEEGKEI 246
              +   E 
Sbjct: 229 QTAQVAPEP 237


>gi|83312839|ref|YP_423103.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1]
 gi|82947680|dbj|BAE52544.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1]
          Length = 300

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 118/270 (43%), Gaps = 24/270 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ +VV+ + A    ++A   +     +  +    +    + +LI   D+  G  
Sbjct: 1   MRPI-VIIVVVAALAAGGTAMLAKSWLDRQEARRAK--AADEPATVEILIINRDVPSGAA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           +  + L + ++P+  V    +      ++     G++ R P+ +G+P+          +G
Sbjct: 58  LAGDDLRYESWPKAAVSPRLVTRKPGEDSKAAFVGMIARRPLAEGEPVSAATTFRPEASG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165
            ++ LL  G RA ++ I+  +AV G + P D VDVV+   + + +               
Sbjct: 118 VMAGLLAPGMRAISIAITNPTAVSGFVTPGDRVDVVLASDIKKSEEGINAEAGSGLLLRY 177

Query: 166 TVTVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
               VL+++RV+AID  I    D   + G TATLE+TP QA+ L  A  +  L L LR  
Sbjct: 178 GAETVLADLRVLAIDQQITRGRDGAPIQGKTATLEVTPKQAEILTVAGMMGTLQLSLRPQ 237

Query: 224 ----ADLNPSSSEDSDVWDVQEEGKEIQII 249
                   P+  E  D     E GK +Q +
Sbjct: 238 RGEDGAAKPAMGEVLDFTADLEAGKVLQAV 267


>gi|332188388|ref|ZP_08390113.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17]
 gi|332011617|gb|EGI53697.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17]
          Length = 329

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 22/258 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV---ITENPAKFINVLISKGDLAV 57
           M   +L+ +V + + A +  + A  L +            +   P     VL++   L V
Sbjct: 1   MDSRKLLLLVGALLVAGMTAVFARTLTAGSGAPQAGAAVIVAPPPETGPEVLVATRALPV 60

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G ++    L++  +P+E V   +         + +L G +VR  I  G P+    +V  G
Sbjct: 61  GTIIDATALKFQPWPKEMVGGAYYLKGQA--DLAKLQGTVVRYAITAGQPLTQGAVVQPG 118

Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVL 171
           + G L++ L  G RA T+ +S  + V G + P D +D+V+ + ++             +L
Sbjct: 119 DRGFLAAALTPGMRAVTVPVSAQTGVAGFVFPGDRIDMVLTQDVAGGGDGPPLKVSETIL 178

Query: 172 SNIRVIAIDHNIDS------DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
            N+RV+A D   DS         +   +T T+E TP  A+ L  AQ+V  LSL LR++AD
Sbjct: 179 RNVRVLATDQRTDSQSGEDGKTPIQTFTTVTVEATPKMAEQLAVAQTVGTLSLSLRALAD 238

Query: 226 -----LNPSSSEDSDVWD 238
                 NP++     V D
Sbjct: 239 RPDDLQNPAAVNAGPVAD 256


>gi|323702114|ref|ZP_08113782.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM
           574]
 gi|323532996|gb|EGB22867.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM
           574]
          Length = 234

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 19/245 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+    + ++++ +F L A     + +             +   F  V++ K  +    +
Sbjct: 1   MRNK--LILILAILFGLAAAFGVFKYLDGLKKSY-----RSSGNFKQVVVPKQTIGPNTM 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGN 118
           +T  +++    P E +  G   D       +++ G + R  +   +PI L +L       
Sbjct: 54  LTAQMVKVKDIPVEMIQPGTAMDT------KDVVGKVTRSDLYPEEPILLSRLHQDKDST 107

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIRVI 177
           G L+  +P G+RA T+++   S V GM+KP DHVD+++       K T  +++L NI+V+
Sbjct: 108 GELALAIPTGQRALTVEVDAVSGVAGMLKPGDHVDILVTFDYEVEKTTLTSLLLQNIKVL 167

Query: 178 AIDH---NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           A+     +    ++ +   T TL +TP QA  L       K+ L+LRS  D   ++   S
Sbjct: 168 AVGQSLVSAQKGDQKVNTQTVTLAVTPEQAPPLTLGSERGKIRLMLRSPKDEGTANLPSS 227

Query: 235 DVWDV 239
            + ++
Sbjct: 228 RMQNL 232


>gi|149176582|ref|ZP_01855195.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797]
 gi|148844695|gb|EDL59045.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797]
          Length = 349

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 118/256 (46%), Gaps = 21/256 (8%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
            V A+  G++AM  V     + ++   +   K  NVL++  ++  G  +  + +++ ++P
Sbjct: 3   LVIAVGCGLVAMLGVRQVLNKDDQ---QAEVKTANVLMTIAEIPPGTPLNESNVKFKSWP 59

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
            + V +G +        +++     ++   + G+ +   KL ++G  G S  +P GKR  
Sbjct: 60  IDQVPEGAVTK------LEQYKDRSIKTRAVPGEIVMKAKLSEQGVRGASVEIPDGKRVF 113

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIRVIAIDHNID---S 185
           T  + ++    G+I P D VDV +  +  + +        V+L  +++ A DH  D   +
Sbjct: 114 TTSVDMTKTHSGLILPGDFVDVYVTFTARKPEGGMSTITKVILERVKIFATDHLTDVGGT 173

Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
           +   +     +L L+P +   L  A+   ++ L LR+ +D    S++  DV    +E  E
Sbjct: 174 ESNQVKSKNISLLLSPREGAMLKLAEKKGEVHLALRAQSD----STDSEDVQFDDDELAE 229

Query: 246 IQIIKAGVIVNKDGEG 261
           +  I+    + KDGE 
Sbjct: 230 VFSIEGSEYL-KDGEE 244


>gi|327189766|gb|EGE56910.1| putative cpaB pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 304

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 8/248 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + ++ +V++ V A  A       +S    +   +      +   V ++   +  G  
Sbjct: 1   MRSSTILSLVIAFVLAAAAVFGMREYLSDQKARLLAMNGMKAEERTLV-VAAKPMRFGDR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    L+ + +P      G    +       +         I  G+P+   K+   G   
Sbjct: 60  IRSENLKAIPWPSNETPAGSFVSIETVVGNDD-QPRYAMAAIDPGEPVLSSKITGAGERA 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175
            LS+ L +G +A ++ ++    V G ++P+D VDV++ R         +  V V+L  ++
Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPEGNDQTFVDVLLQGVK 178

Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+D   D   +   V  T T E+T  +A+ L    S+  LSL LR++A  +   +   
Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNVASSSIEQTRPI 238

Query: 235 DVWDVQEE 242
            V D+   
Sbjct: 239 TVADLGGG 246


>gi|23016178|ref|ZP_00055937.1| COG3745: Flp pilus assembly protein CpaB [Magnetospirillum
           magnetotacticum MS-1]
          Length = 296

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 33/282 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           ++ + A   G++A   +     Q       + A  + VL+   D+  G  ++ + L + +
Sbjct: 1   MASLAAGGTGMLANAWLDR---QESRHAKADDAPVVEVLVINRDVPSGAALSVDDLRYES 57

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGK 129
           +P        +      +A     G++ R  + +G+P+         + G L+ LL  GK
Sbjct: 58  WPRSAATARLVVRRPGEDAKAAFVGMIARRALTEGEPVSAATTFKPDSSGVLAGLLGPGK 117

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------------------V 167
           RA ++ I+  +AV G I P D VDVVM+  L + +                         
Sbjct: 118 RAISITITNPTAVSGFITPGDRVDVVMLTDLKKIEDAQGRESKQEEGRFGGETLLVRFGA 177

Query: 168 TVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             VLS+IRV+AID  I    D   + G TATLE+TP QA+ LV A+++  L L LR    
Sbjct: 178 ETVLSDIRVLAIDQQITRGRDGAAIQGKTATLEVTPKQAEILVLAETMGMLQLSLRPQQG 237

Query: 226 LNPSSSEDS----DVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263
             P+ +       D     E GK +Q    G    K G   S
Sbjct: 238 DGPAVAPQPGEMLDFTADLEAGKALQ-ASVGFAAKKKGTKAS 278


>gi|209546484|ref|YP_002278402.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537728|gb|ACI57662.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 305

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 8/248 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + ++ +V++ V A  A       +S    +   +      +   + ++   +  G  
Sbjct: 1   MRSSTILSLVIAFVLAAAAVFGMREYLSDQKARLLAMNGVKAEERTLI-VAAKPMRFGDR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           + P  L  + +P      G    +                 I  G+P+   K+   G   
Sbjct: 60  IRPENLRAIPWPSNETPAGSFVSIETVVGSDA-QPRYAMAAIDPGEPVLSSKITGAGERA 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175
            LS+ L +G +A ++ ++    V G ++P+D VDV++ R         +  V V+L  ++
Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPAGNDQTFVDVLLQGVK 178

Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+D   D   +   V  T T E+T  +A+ L    S+  LSL LR+IA  +   +   
Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNIASASVEQTRPI 238

Query: 235 DVWDVQEE 242
            V D+   
Sbjct: 239 TVADLGGG 246


>gi|260426594|ref|ZP_05780573.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45]
 gi|260421086|gb|EEX14337.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45]
          Length = 286

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 110/245 (44%), Gaps = 11/245 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58
           M+L   + ++     A  A  +A +      + +Q E            + ++   +  G
Sbjct: 1   MRLVFGLVLIAGLGLAGFAVHLAQKQFGAYQNALQLERAKAVKAVPTRMIYVTTQAVPTG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
            V+    ++   +P+E + +G  D+ + P A  E    +V   + K + +   ++ + G 
Sbjct: 61  EVLRKEYVKLAPWPQEILPEGVFDETNPPFADGEAP-RVVTRAMDKFEAVLTTRISEPGG 119

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171
           + GL++ L +G+RA  + + ++S V G ++P D VDV     +        R     ++ 
Sbjct: 120 DAGLTTRLERGQRAFAIKVDVTSGVSGFLRPGDRVDVYWTGKMPGTDANLPRGEVTKLIE 179

Query: 172 SNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           + +++IAID   +  +    +  T T+ ++P Q   L  AQS  +LSL L +  D + + 
Sbjct: 180 TAVKLIAIDQTAEVENSDATIARTVTVAVSPQQVAGLAQAQSTGRLSLSLLAANDDSIAE 239

Query: 231 SEDSD 235
           + + D
Sbjct: 240 AIEVD 244


>gi|225872753|ref|YP_002754210.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791215|gb|ACO31305.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum
           ATCC 51196]
          Length = 271

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 18/251 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +L  ++ + V +    ++  R ++              A     + +   +AVG V
Sbjct: 1   MKSRQLTALLAALVISGGFTLLLGRKLTHS--------AHRAAPQKQYMAAARPIAVGEV 52

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    ++ + +P      G +         +++ G     P+  G PI    L   G+  
Sbjct: 53  IQAADVKTILWPANLPLQGGMATT------KDVIGRAAIFPVTVGQPILSTDLAAPGSSL 106

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIA 178
           G+++ +P G RA  +      AVGG I P  HVDV++  R+    +P    VL N  V+A
Sbjct: 107 GITTRIPNGMRAIALHTDDVIAVGGFIFPGSHVDVLVTYRNPGSPQPITATVLQNALVLA 166

Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
             H    D   +    +  TL L+P  A+  V A +   +  VLR+ AD        +D+
Sbjct: 167 TGHQTQPDPQGKPTTVNIVTLLLSPEDAERAVLASTQGTIHFVLRNGADQQKGMPPPADL 226

Query: 237 WDVQEEGKEIQ 247
            ++     + +
Sbjct: 227 AELDGYSPQPR 237


>gi|317154606|ref|YP_004122654.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2]
 gi|316944857|gb|ADU63908.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2]
          Length = 273

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 120/275 (43%), Gaps = 30/275 (10%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L+ I +S + AL  G++     S     T++ +    A+ + V+++  DL  G+ +T
Sbjct: 5   ARALIQIGISLILALGTGVLIFMWTSGV---TQQPVAAPRAETVPVVVALTDLRPGIKLT 61

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGG 120
           P +LE   F  ++   G   +         LDG ++ V +   + +   KL D     GG
Sbjct: 62  PAMLETRQFTPDSRPSGAFGEPGL------LDGRVLGVAVGANEAVTEAKLADASVIGGG 115

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVI 177
           +S+L+  GKRA ++  +    + G ++P D VDV++       ++ +P   +VL  ++V+
Sbjct: 116 VSALIEPGKRAMSVKGNAVMGLAGFVRPGDRVDVIVSLVQGRGNQEEPVTKLVLERVKVL 175

Query: 178 AID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           A        D++ +       TLELTP +++ L  A +   L+  LR+  D +   ++  
Sbjct: 176 ATGTELQAPDTEGKAASVDVYTLELTPDESERLALAATQGTLNFALRNATDTDKVLTDGV 235

Query: 235 DV-------------WDVQEEGKEIQIIKAGVIVN 256
            V               V+     +++I  G    
Sbjct: 236 TVNKALAALRPAPKPAPVRRNQVSVEVITGGETTT 270


>gi|114764945|ref|ZP_01444118.1| CpaB family protein [Pelagibaca bermudensis HTCC2601]
 gi|114542657|gb|EAU45681.1| CpaB family protein [Roseovarius sp. HTCC2601]
          Length = 286

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 10/238 (4%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
              + +Q E            + +    +A G ++TP+ ++   +P E + +G   +  +
Sbjct: 29  AYQNALQEERQKAVEAVPTGRIYVMTRPIARGEILTPDAVKLAPWPMEIMPEGIFTE-KR 87

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGM 145
           P  ++     +V   + K D +   ++ + G + GL+S L +G+RA  + + +++ V G 
Sbjct: 88  PLFVEGDAPRVVVNAMDKFDAVLDGRVSEPGGDAGLTSRLERGERAFAIKVDVATGVSGF 147

Query: 146 IKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATL 197
           ++P D VDV     +    P         ++ + IR+IA+D   +S+      +  T T+
Sbjct: 148 LRPGDRVDVYWTGRVPGNDPNLPQGDVTKLIETGIRLIAVDQTAESETANPTTIARTVTV 207

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255
            +TP Q   L  AQS  +LSL L +  D   + + + D   +    K  Q ++   I 
Sbjct: 208 AITPQQVAGLAQAQSTGRLSLSLMAANDETVADAIEVDQRALLGLTKREQQVEKKSIQ 265


>gi|84386798|ref|ZP_00989823.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
 gi|84378326|gb|EAP95184.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
          Length = 293

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 29/271 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM + +   F  V GI  + L   ++        +   + + VL+    + +G  
Sbjct: 1   MTAKRLMLLSL---FCSVLGISVLLLSQTNNESASTSSKQAVKQTVKVLVPTRTIEIGQA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVDRGNG 119
            TPN   W   P++ + + +ID V   +   +     L R  ++K   +    + +   G
Sbjct: 58  YTPNSFRWKEVPQQEL-ENYIDHVTPEDISADHTMSGLARTKLVKDSILSKADITEPEGG 116

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTV 169
             LS  L  G RA ++ +   ++  G I+P D VD++++ S            +   VT 
Sbjct: 117 YSLSLKLQPGYRAISVPVDQVTSNSGFIEPGDRVDILLLGSQDGELLRYGNSSQGLYVTT 176

Query: 170 VLSNIRVIAID--HNIDSDERVLVGS----------TATLELTPMQAKALVAAQSVAKLS 217
           ++ + RV+A +     +S ++    +          + +LE+TP QA  +V A+ + KL+
Sbjct: 177 IVHDARVLAFNDKQTAESYQKARESNQHKKVVPDDSSVSLEVTPEQANQVVLAKQLGKLT 236

Query: 218 LVLR--SIADLNPSSSEDSDVWDVQEEGKEI 246
           LVLR  + A   P  +    +  +  +  ++
Sbjct: 237 LVLRGQNEAQDQPQHANAVTLKVISPDTTQV 267


>gi|84501677|ref|ZP_00999849.1| CpaB family protein [Oceanicola batsensis HTCC2597]
 gi|84390298|gb|EAQ02857.1| CpaB family protein [Oceanicola batsensis HTCC2597]
          Length = 265

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 7/213 (3%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
                V +    L  G  ++   +  + +P   + +G   + +      +     V   +
Sbjct: 23  VPTKMVYVVNRQLKYGEQLSRADVRQIEWPAAAIPEGVFHEENTLFPENDPRPRFVLRTM 82

Query: 103 LKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
            + + +   K+   G + GL+S L KG RA  + + ++S V G ++P D VD+     +S
Sbjct: 83  ERNEAVLTGKVTAPGEDAGLTSRLEKGMRAFAIKVDVASGVSGFLRPGDKVDIYWTGRVS 142

Query: 162 E-----RKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAK 215
                       ++ + I++IA+D   + D    ++  T T+ + P Q  AL  AQS  +
Sbjct: 143 GMDRNASGEVTKLIETGIQLIAVDQMANGDHSEAMIARTVTVAVNPQQVGALAQAQSTGR 202

Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248
           L+L L    D   + + + D   +    +  QI
Sbjct: 203 LALSLVGNLDDTVAEAIEVDQRSLLGLSEAPQI 235


>gi|220922531|ref|YP_002497833.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
 gi|219947138|gb|ACL57530.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
          Length = 307

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
              ++  ++ +   +   P     ++++   L  G  +TP     + +P E   +G    
Sbjct: 19  AAFLARSYLMSVSSVGPAPLPAHTIVVATQPLPFGTQLTPENTTEIDWPSETRLEGSF-- 76

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAV 142
               + +   +  +V   I + + +   K+   G    LS+L+ +G RA  + +     V
Sbjct: 77  -ATRDELLRGERRVVLSSIARNEVVLAGKITGPGQRATLSTLIEEGMRAVAVRVDDVRGV 135

Query: 143 GGMIKPNDHVDVVMVRSLS--ERKPTVTVVLSNIRVIAIDHNI-DSDERVLVGSTATLEL 199
            G I PND VDVV+ R     E K    ++L N++V+AID    D  ++  V    TLEL
Sbjct: 136 AGFILPNDRVDVVLTRDEEARESKGFADILLQNVKVLAIDQLANDHADKPTVARAVTLEL 195

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            P+QA+ ++ AQ V +LSL+L    +    +     V D+   
Sbjct: 196 NPVQAQKIILAQGVGRLSLILNKAGNATSDTPSRVTVADLGRP 238


>gi|90406751|ref|ZP_01214944.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3]
 gi|90312204|gb|EAS40296.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3]
          Length = 286

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 112/267 (41%), Gaps = 25/267 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM   V      + G+            T   + +   K + +L+S  ++  G +
Sbjct: 1   MTAKRLMYFSVFISLIGLLGLFM-----SVSSPTAPALIKEENKTLTILVSSQEIKSGRL 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNG 119
            + +I  W   PE ++ +            +     +V   +  G  +     L      
Sbjct: 56  YSASIFAWKKVPESDLAEQIDYIQKIDFNNKAYKKSIVTGDLPAGHIMSQSDFLTLEDGA 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVV 170
            LS LL  G RA ++ +   +A  G+I+P DHVDV+++ S  +         R   V  +
Sbjct: 116 FLSVLLRPGYRAVSVGVDHITANSGLIRPGDHVDVLLLASKEKELRSTGNETRSLYVKTI 175

Query: 171 LSNIRVIA------IDHNIDSDERVL----VGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           + N+RV+A      ID   +  +R        S  TLE+ P QA  ++ A  +  LS++L
Sbjct: 176 VQNVRVLALNDALQIDRYQEEKKRNKGMLPEKSAVTLEVLPAQANTVILANQLGTLSMLL 235

Query: 221 RSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           R+ +D +  ++   D+ D+  E K++Q
Sbjct: 236 RNSSDNSILANTQVDIGDIFPEIKQVQ 262


>gi|163745847|ref|ZP_02153206.1| CpaB family protein [Oceanibulbus indolifex HEL-45]
 gi|161380592|gb|EDQ05002.1| CpaB family protein [Oceanibulbus indolifex HEL-45]
          Length = 286

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 10/245 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58
           M+    + ++V    A  A  +A   +S +     +             V +++  L  G
Sbjct: 1   MRAVFGLVLLVGIALAGGAVYLAKDRISQYQAANAQAQAALAQVVPTQTVWVAEKPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T   +  V +PE  + +G   +          D  +V   I K + I   K+ + G 
Sbjct: 61  QPLTREDVRAVNWPENAIPEGSFIEETLLFPENTKDHRIVLRNIEKDEAIMAVKVTEPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLS 172
           + GL+S L +G RA T+ + +SS V G ++P D VDV           S       ++ S
Sbjct: 121 DSGLTSRLARGMRAFTIKVDVSSGVSGFLRPGDRVDVYWTGRVNVGNQSSNGDVTKLIES 180

Query: 173 NIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            +++IAID + D+   E   +  T T+ + P Q  AL  AQS  KLSL L    D   + 
Sbjct: 181 AVQLIAIDQSADALVMEEASIAKTVTVAVKPQQVAALAQAQSTGKLSLSLVGTNDDTVAE 240

Query: 231 SEDSD 235
           + + D
Sbjct: 241 AIEVD 245


>gi|254466356|ref|ZP_05079767.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I]
 gi|206687264|gb|EDZ47746.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I]
          Length = 285

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 13/246 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   +S   + +  E          ++V ++   L  G
Sbjct: 1   MRAVFGLVLIVGVALAGGAVMMAKNYISAYQNELARERAARAETVPTVDVFVATKPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVH---QPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
             ++ + +  V +PE  + +G    +     P +  +L   +V   + K + +   K+  
Sbjct: 61  ERLSQDAVRAVRWPENAIPEGAYTTLDALFPPQSGDKL--RVVLRAMEKDEAVMAVKVTA 118

Query: 116 RG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVV 170
            G + G++S L +G RA  + + +SS V G ++P D VDV        +   R     ++
Sbjct: 119 PGEDAGITSRLQRGMRAFAIKVDVSSGVSGFLRPGDKVDVYWTGMMPGAGGSRGEVTRLI 178

Query: 171 LSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            +N+ ++A+D +   D    ++  T T+   P Q  AL  AQ+  +LSL L    D   +
Sbjct: 179 ETNVELVAVDQSAGGDINEAIIARTVTVAAKPAQVAALAQAQTTGRLSLALVGAGDDTIA 238

Query: 230 SSEDSD 235
           S  + D
Sbjct: 239 SVVEVD 244


>gi|86360579|ref|YP_472467.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284681|gb|ABC93740.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42]
          Length = 304

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 8/248 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + ++ +V++ V A  A       +S    +   +      +   V ++   +  G  
Sbjct: 1   MRSSTILSLVIAFVLAAAAVFGMRAYLSDQKARLLAMNGVKTEERTLV-VAATPMRFGDR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    L  + +P      G    +       +         I  G+P+   K+   G   
Sbjct: 60  IRSENLRAIPWPSNETPTGSFVSIDLVVG-NDAQPRYAMAAIDPGEPVLSSKITGAGERA 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175
            LS+ L +G +A ++ ++    V G ++P+D VDV++ R         +  V V+L  ++
Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPAGNDQTFVDVLLQGVK 178

Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+D   D   +   V  T T E+T  +A+ L    S+  LSL LR++A  +   +   
Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNVASSSVEQTRPI 238

Query: 235 DVWDVQEE 242
            V D+   
Sbjct: 239 TVADLGGG 246


>gi|126725968|ref|ZP_01741810.1| CpaB family protein [Rhodobacterales bacterium HTCC2150]
 gi|126705172|gb|EBA04263.1| CpaB family protein [Rhodobacterales bacterium HTCC2150]
          Length = 284

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 107/257 (41%), Gaps = 9/257 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58
           M+L     +V     A  A  +A   +  +   +   +   +N  +   V ++   L  G
Sbjct: 1   MRLVFGAVLVAGVGLAGFAVNMAQDRIGQYQSALAASQANAQNKVELKTVFVASKTLDYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
            ++T   +     P +++ +G                  +   + + + +   K+   G 
Sbjct: 61  DMLTEEDVREAMVPVDSIPEGAFMAKADLFDENPNKPRQILRLMTENEILLAYKVTKPGE 120

Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVLS 172
             G+++LL  G RA ++ +  ++ V G++  +DHVDV      ++           ++ +
Sbjct: 121 EAGVATLLTPGMRAFSIRVDDTTGVAGLLNADDHVDVYWTGGKADGLGNRDGGVTKLIQA 180

Query: 173 NIRVIAIDHNIDSDERVLV-GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           N++++AID + D          T T+E++P Q  +L  AQ+  KLSL L  I+D   +  
Sbjct: 181 NVKLVAIDDSADKQRSSSRSARTVTVEVSPQQVASLAQAQNSGKLSLSLVGISDDIVALV 240

Query: 232 EDSDVWDVQEEGKEIQI 248
           E+ D   +    + + +
Sbjct: 241 EEVDQNRLLGVQETVVV 257


>gi|153006806|ref|YP_001381131.1| SAF domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030379|gb|ABS28147.1| SAF domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 322

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 14/221 (6%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E   +        V+++  D+    ++    L  + +P  +   G   D         L 
Sbjct: 52  EAKASAAKVPTTKVVVASVDIPSATMLRTESLSVIDWPSASTPQGTFADPAT------LV 105

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
             +V   + KG+PI   +L   G   GL+++LP G RA  + ++    V G + P D VD
Sbjct: 106 ERVVTSAVSKGEPILESRLAAPGTAAGLAAVLPAGMRAVAVRVNDVVGVAGFLHPGDAVD 165

Query: 154 VVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQAKA 206
           V++  S S      P   ++L N+RV+A+   ++      ++ +  + ATL +   Q++ 
Sbjct: 166 VIVTMSPSGGGGQAPMSKIILQNVRVLAVGKEVERADRAFDKAIPATVATLMVDSEQSEK 225

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           L  A +  ++ L LRS AD    ++       +   G+E +
Sbjct: 226 LALAATKGQILLSLRSGADEEMLATPGITPPVLLASGREPE 266


>gi|288956968|ref|YP_003447309.1| pilus assembly protein [Azospirillum sp. B510]
 gi|288909276|dbj|BAI70765.1| pilus assembly protein [Azospirillum sp. B510]
          Length = 288

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 18/235 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKL  +   + +   A+V G++    V          I +       + ++  DL  G  
Sbjct: 1   MKLGTVFLGIAAVSMAVVGGLMVQAAVGARGAPAAVEIPQR-----RIAVAAADLPAGSF 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNG 119
           + P  + W AFPE  +    +  V   + +  L G +VR  +  G+ I  ++L   R  G
Sbjct: 56  LQPMSVRWEAFPENALRPETL--VEGKDNIDSLVGAVVRDAVKAGEIISRDRLLSPRERG 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIR 175
            L+++L  G RAA++ ++  S   G+I P DHVD+++ +  ++    R+     +L N+R
Sbjct: 114 FLAAVLAPGMRAASVAVNEVSGTAGLIFPGDHVDLLLTQEANDEGAARRLATETILDNLR 173

Query: 176 VIAIDHNID------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           V+A+D   D        +   V  T TLE+T  QA+ +  A ++ KL+L LRS+A
Sbjct: 174 VLAVDQRTDFPKGEEPGQTARVARTVTLEVTAKQAQVISVAANLGKLTLSLRSLA 228


>gi|218661134|ref|ZP_03517064.1| pilus assembly protein [Rhizobium etli IE4771]
          Length = 205

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 90/205 (43%), Positives = 130/205 (63%), Gaps = 4/205 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AMR+     V T+          +NVL+S G+LAVG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LEEGSVHWMAWPQGGVVPGLITEAEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNIDSDE---RVLVGSTATLELTP 201
           D  I   +   + +VG+TATLELTP
Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTP 205


>gi|149200846|ref|ZP_01877821.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035]
 gi|149145179|gb|EDM33205.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035]
          Length = 289

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 13/248 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVG 58
           M+    + ++V    A  A  +A   +  +  Q E    +     + +++ ++   L  G
Sbjct: 1   MRAVFGLVLIVGLGLAGFAVYMAKNYIDGYQRQLEAERQQRAPVIETVDIFVATRALQYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +  + +   AFP+ ++ +G      +     E         +   +PI   K+ + G 
Sbjct: 61  EALDKDAVRLTAFPKTSLPEGVFKATEELFPKGETVARRALRRMEMNEPILAVKVTEPGA 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVT 168
             G++S L +G RA  + + ++S V G ++P D +D+    S+                 
Sbjct: 121 EVGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTIDIYWTGSVGAGNMRTEGNSMGEVTK 180

Query: 169 VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           ++ + +++IA+D   D D    ++  T T+ + P Q  AL  AQS  +LSL L    D  
Sbjct: 181 LIENGVKLIAVDQVADMDTSETVIARTVTVAVKPQQVAALAQAQSTGRLSLSLVGALDDT 240

Query: 228 PSSSEDSD 235
            +   + D
Sbjct: 241 VAEVIEVD 248


>gi|315497466|ref|YP_004086270.1| flp pilus assembly protein cpab [Asticcacaulis excentricus CB 48]
 gi|315415478|gb|ADU12119.1| Flp pilus assembly protein CpaB [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 47/297 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58
           MK +R + + ++ V AL+  ++   ++  +         +    A  + VL++   L VG
Sbjct: 1   MKASRFVVVGIAAVAALLLALVVRGMIGGNGASNANASQKVAVEAPTVKVLVAARHLKVG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDD----------------------------------- 83
             +    L W A+PE+ + + +  D                                   
Sbjct: 61  ERIAEADLAWKAWPEDGITESYFTDKPVTPVAPAEAKSAEDKALEEKVKNGAAQVADVAD 120

Query: 84  --VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISS 140
             ++    M  + G +VR  +L  +PI   K+V    GG ++ +L  G RA  + +++ S
Sbjct: 121 KTLNPTRGMDAVLGGVVREEMLANEPIVARKVVRADAGGFMAVMLAPGMRAMAVPVTVES 180

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAIDHNID--SDERVLVGSTA 195
             GG I P D VD+V+   L     T      VL N++V+A+D  ++  SD+  ++G+TA
Sbjct: 181 TAGGFILPGDRVDIVVSTELQSNGQTTHVAKPVLRNVKVLAVDQTVEAKSDQPSVIGATA 240

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252
           TLE+ P + +AL  A++   LSL+LRS AD+   S            G ++ + + G
Sbjct: 241 TLEVRPEEGEALAQAKAQGPLSLMLRSYADVGGPSGRVG--PSATGTGNKVVVYRNG 295


>gi|13471033|ref|NP_102602.1| hypothetical protein mll0900 [Mesorhizobium loti MAFF303099]
 gi|14021777|dbj|BAB48388.1| mll0900 [Mesorhizobium loti MAFF303099]
          Length = 308

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 25/247 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV-----QTEEVITENPAK--FINVLISKG 53
           M+   +  I ++ VF  ++   A   V          +T  +    P +  F  ++++K 
Sbjct: 1   MRGKAITMIGIAAVFGAISIFAADFWVKSQAKADAEEKTASIAAPVPPRIEFKTIVVAKA 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
            L  G  +    L  + +P++++  G    +            +V  PI   +P+ L KL
Sbjct: 61  PLRYGQELDRAKLIEIPWPQDSLPQGAFATIDGLLGEG---NRIVLSPIEVNEPVLLTKL 117

Query: 114 VDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------- 165
               G   LS++L  G RA T+     + VGG + P D VDVV+ R   E +        
Sbjct: 118 SGPNGRATLSNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQG 177

Query: 166 ------TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
                 T  +V+++ +V+++    D  +    + ++ T+E+T   A+ +  A++V  LSL
Sbjct: 178 AAGSTVTSEIVVADAKVLSVGQGADERQTTPQITNSVTIEVTTEGAQKVALARTVGTLSL 237

Query: 219 VLRSIAD 225
            LRS ++
Sbjct: 238 SLRSASE 244


>gi|294676058|ref|YP_003576673.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003]
 gi|294474878|gb|ADE84266.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003]
          Length = 291

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 18/252 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58
           M++   + +V+    A +A  +A + +S   V+ + ++ E     + ++V++ +  LA G
Sbjct: 1   MRMIVALVLVLGVALAGLAVYMAQQQISQFQVERDRLVAEQRNAPQLVDVVVLRRPLAYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAM------------QELDGVLVRVPILKGD 106
              T   L  +     ++  G    V  P                E             +
Sbjct: 61  ERFTAADLGVIKMQVGHLPAGIFHSVATPQGAPEEAQAASVFPGGETRPRAALRAYDAYE 120

Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            I   K+   G + G+++ L    RA T+ +  ++ V G ++P D VDV     ++  + 
Sbjct: 121 AILANKITAPGVDAGITASLSPNMRAFTISVDATTGVSGFLRPGDRVDVYWSGEVNGER- 179

Query: 166 TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
              ++ +N+R+IAID + D+D  E   +  T T E+TP Q  +L  AQ   +L+L L  +
Sbjct: 180 VTKLIDTNLRLIAIDQSADADRAEETQLAKTVTAEVTPEQVASLTLAQGTGELTLSLVGM 239

Query: 224 ADLNPSSSEDSD 235
            +     + + D
Sbjct: 240 QNTADPGAIEID 251


>gi|319779650|ref|YP_004130563.1| SAF domain protein [Taylorella equigenitalis MCE9]
 gi|317109674|gb|ADU92420.1| SAF domain protein [Taylorella equigenitalis MCE9]
          Length = 325

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 9/253 (3%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNILEWVAF 71
             FA+ AGI+A    + +  +    I  N  +  I  +++ GD+  G ++  +IL     
Sbjct: 11  AGFAIGAGILATFSANKYMKEKISQIEANHRQVMIPRIVAAGDIPEGTIIDSSILAVRDI 70

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131
           PE  V      D   P+  + ++G ++  P+  GDP+             S  +  G+RA
Sbjct: 71  PENWVSS----DSLSPDEFERIEGKIITSPLTAGDPVLWAHTSTVSRRPFSEKVAVGRRA 126

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN--IDSDERV 189
            TM +   ++V G+I P D +D+ +      R      +L  + V+A D    + +D   
Sbjct: 127 VTMPVDTINSVSGLIVPGDLIDLYVSFKYRNRD-ITAPLLQGVLVLATDKESKLTNDGSE 185

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS-SEDSDVWDVQEEGKEIQI 248
              ST TL+ +P +A  LVAA+    ++  LR+  D   S      D+  +        I
Sbjct: 186 REFSTVTLDTSPEEAAKLVAARQDGVITAFLRNPDDKKASQKGVKGDLASILGIATSGPI 245

Query: 249 IKAGVIVNKDGEG 261
           ++    V    +G
Sbjct: 246 VRKKASVIYGDQG 258


>gi|254512153|ref|ZP_05124220.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11]
 gi|221535864|gb|EEE38852.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11]
          Length = 290

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 17/270 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-------TEEVITENPA---KFINVLI 50
           M+    + +++    A  A  +A   ++ +  +        EE +    A     ++VL+
Sbjct: 1   MRSVFGLVLIIGVALAGGAVYMAREYITDNQAKLAQERKLREEALANAKAGLVPTVDVLV 60

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           S   L  G  +T   +  V +PE  + +G   ++         +   V   + K + I  
Sbjct: 61  SNRSLKYGEQLTQEDIRVVQWPENAIPEGTFVEIAALFPDTRDNERFVLRAMEKDEAIMA 120

Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTV 167
            K+   G   GL S LPKG RA  + + ++S V G ++P D VDV          R    
Sbjct: 121 VKVTAPGETAGLRSQLPKGMRAFAISVDVASGVSGFLRPGDTVDVYWTGAVRSEGRGEIT 180

Query: 168 TVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL+NI ++A+D     D     +  T T+  TP Q  AL  AQ+  ++SL L    D 
Sbjct: 181 RLVLTNIELVAVDQTAGLDVTGTTIARTVTVAATPQQIAALAQAQNTGRMSLALVGAQDD 240

Query: 227 NPSSSEDSD---VWDVQEEGKEIQIIKAGV 253
             +   + D   +  ++E+     +++  V
Sbjct: 241 KVAEVVEVDQRALLGIEEQAPAPVVVEKKV 270


>gi|116620531|ref|YP_822687.1| SAF domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223693|gb|ABJ82402.1| SAF domain [Candidatus Solibacter usitatus Ellin6076]
          Length = 299

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 108/251 (43%), Gaps = 19/251 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  +  + + A  A ++  R++      T    T      + V ++  +L VG +
Sbjct: 1   MNKRFVGVLTFAFLVAAGASLVLYRVLINRPQATNAAPT-----MVQVALATRNLEVGTL 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + ++   +P   V  G    V      +++ G  V   I   +PI   +L  +G GG
Sbjct: 56  LKEDDVKLSDWP-GAVPIGATAQV------KDVLGRGVTTAIFAKEPIIESRLAPKGAGG 108

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLSNIR 175
            L++++P G RA  + ++    V G + P  HVD+++  +              +L NI 
Sbjct: 109 GLAAMIPSGMRAVAVRVNEVVGVAGFVVPGMHVDILISGNTPGGDGNLGTLTKTLLQNIE 168

Query: 176 VIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           V++   +   D++ + ++     L +TP QA+ L  A +   + L+LR+  D   S +  
Sbjct: 169 VLSAGQDFKKDNEGKPIMVQVVNLLVTPEQAEQLSLASNQTTIQLILRNPLDHEISKTSG 228

Query: 234 SDVWDVQEEGK 244
           + +  +   G+
Sbjct: 229 TALRSLFTGGR 239


>gi|260463893|ref|ZP_05812089.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
 gi|259030268|gb|EEW31548.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
          Length = 299

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 23/238 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEE-----VITENPAKFINVLISKGDLAVGMVVT 62
            I ++ VF  ++   A   V       E+            +F  ++++   L  GM + 
Sbjct: 1   MIGIAAVFGAISIFAADFWVKSQADAQEKTASIAAPAPPKIEFKTIVVANAPLRYGMELD 60

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGL 121
              L  + +P++++  G    +          G +V  PI   +P+ L KL    G   L
Sbjct: 61  RTKLIEIPWPQDSLPQGAFATIDGLLGEG---GRVVLSPIEVNEPVLLTKLSGPNGRATL 117

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------TVT 168
           S++L  G RA T+     + VGG + P D VDVV+ R   E +              T  
Sbjct: 118 SNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTITSE 177

Query: 169 VVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +V+++ +V+++    D  +    + ++ TLE+T   A+ +  A++V  LSL LRS ++
Sbjct: 178 IVVADAKVLSVGQGADERQTAPQIANSVTLEVTTEGAQKVALARTVGTLSLSLRSASE 235


>gi|319943381|ref|ZP_08017663.1| SAF domain protein [Lautropia mirabilis ATCC 51599]
 gi|319743196|gb|EFV95601.1| SAF domain protein [Lautropia mirabilis ATCC 51599]
          Length = 339

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 108/268 (40%), Gaps = 15/268 (5%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L+ +  + +   VA     R V+       E +     + ++V+++   L  G +V
Sbjct: 11  RHRNLLLMSAAMLCGGVAIYAGSRYVNEQVQAERERLAPVAQQMVDVVVANATLDKGEIV 70

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           +   +   + P E V    +     P     L G  + +P+  G+ +    +        
Sbjct: 71  SGETMAIRSVPAEYVSSSVVT----PEQFDALVGQRLLLPMRPGEMLSTAAVSSAEQLVF 126

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLSNI 174
           SS +  G RA T+ +   +++ GM++P D +D+++                    +L N+
Sbjct: 127 SSRVKPGIRALTISVDEINSISGMLQPGDRIDLLLTARPPSASGHGEAEHDATVPLLQNL 186

Query: 175 RVIAIDHN----IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            V+A         + +      S+ T+E+TP QA+ L+ AQ   +L+ VLR+  D  P  
Sbjct: 187 LVMATGRQVRPGANDNGDDRSFSSVTVEVTPSQAQRLIVAQRAGRLTAVLRNPDDGMPMD 246

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKD 258
           +   D+  +  +     +    V+  +D
Sbjct: 247 AAAVDLRSLFPQPARPAVAPRKVVARQD 274


>gi|329847252|ref|ZP_08262280.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19]
 gi|328842315|gb|EGF91884.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19]
          Length = 311

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 128/305 (41%), Gaps = 50/305 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVG 58
           MK +R + + V+ + A++   +   +++    Q  +   +         VLI+  +L  G
Sbjct: 1   MKASRYVVMGVAAIAAILLAFLVRGMIAGGGAQEAKATVDKTPAVATARVLIAARELKAG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAM---------------------------- 90
             ++   L W  +P  ++   +I D   P                               
Sbjct: 61  TRISEADLTWQEWPVASLNAAYIVDGGMPAGAPGMEGAAKPAADKPKSDVEEKVGDVTQA 120

Query: 91  -----------QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISI 138
                      +   G + R  IL  +PI   K+V    GG ++ +L  G RA  + +S+
Sbjct: 121 VADKIAPSPTKEAYVGGVAREDILANEPIIDAKIVRSDEGGFMAVMLQPGMRALAVPVSV 180

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNIRVIAIDHN--IDSDERVLV 191
            +  GG I P D VD+++   L       T+     VL NIRV+AID +   + D++ ++
Sbjct: 181 DNTAGGFILPGDRVDILVTHQLPSATGRGTIDSVQPVLRNIRVLAIDQSVAAEQDKQTVI 240

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-PSSSEDSDVWDVQEEGKEIQIIK 250
           G+TATLE++P   + +  A++   LSL+LRS AD   PS +  +       E   +++ +
Sbjct: 241 GATATLEVSPGDGQVVTLAKASGTLSLMLRSYADAQGPSGAVTTSPTGGASEDLPVRVYR 300

Query: 251 AGVIV 255
            G   
Sbjct: 301 NGQAT 305


>gi|297618080|ref|YP_003703239.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145917|gb|ADI02674.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM
           12680]
          Length = 242

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 25/251 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++   I ++ +F L A ++A R ++    + E      P   + V+++  D+    V
Sbjct: 1   MKGSKKYWI-LAILFGLAATVLAYRYIAGVKARYE------PKNLVQVVVAATDIPKNSV 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   ++    P +      + D      + E+ G +    I+ G+ I   K++      
Sbjct: 54  ITREKVKLELVPAQFAHPAAVRD------LDEVVGRVAASYIVAGEEILSAKIISDAEKT 107

Query: 121 --LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSNIR 175
             L+  +P GKRA ++ ++  S V G+++P D VDV+    L+  +  V V   +L ++ 
Sbjct: 108 NKLAYAVPMGKRAVSVPVNAVSGVSGLVRPGDRVDVIATVELASGQENVAVTSFILQDVE 167

Query: 176 VIAIDHNIDSDERV-------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           V+A+D N+D  + V          +T TL +TP +A+ LV A     + L LR+ AD + 
Sbjct: 168 VLAVDQNLDETKPVPAAKEEAAPATTVTLAVTPEEARPLVLASEQGSIRLALRAPADHDR 227

Query: 229 SSSEDSDVWDV 239
                  + D+
Sbjct: 228 VMLPPVRLVDI 238


>gi|86159250|ref|YP_466035.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775761|gb|ABC82598.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 307

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 16/216 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            E            V+++  DL     +  ++L  V +P  NV +G   D        +L
Sbjct: 48  VETRTAAARVSTTPVVVATIDLPEATTLRADVLTVVQWPSANVPEGAASDPA------KL 101

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
              +VR  ++KG+P+   +L     G GL+++LP G RAA + ++    V G I P D V
Sbjct: 102 VDRVVRARVIKGEPVIESRLAAADAGHGLAAILPPGMRAAAVRVNDVVGVSGFIHPGDSV 161

Query: 153 DVVMVRSLSERKPT-----VTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQ 203
           DV++V        +       ++L N+ V+A+   ++ +    E+ L  + ATL +   Q
Sbjct: 162 DVIVVMRPESNGNSNPAYFSKIILQNVPVLAVGKELERNERSLEKSLPATVATLMVDSEQ 221

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
           ++ L  AQ+   + L LRS  D     +   +   +
Sbjct: 222 SEKLALAQTKGNILLTLRSGIDRELVDTTGVNPAGL 257


>gi|325108089|ref|YP_004269157.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
 gi|324968357|gb|ADY59135.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
          Length = 418

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 20/248 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+  ++ +     FA+  G+IAM  V     Q      ++  + + VL++  D++ G++
Sbjct: 1   MKMKTILVLA----FAVGCGLIAMVGVQQMIAQQSN---KDQNQTVEVLVAAQDISPGVL 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +      +   P E V    +       + +E     + VP++ GD IR  KL  RG   
Sbjct: 54  LNQANCAFKKLPVEGVPSDAVR------SKEEYAERGLLVPVMAGDIIRKSKLGARGEIA 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLSNIRV 176
            S+ +P G R  ++ ++ +    G+++P D VD+ +   +   +        ++L  I V
Sbjct: 108 ASASIPAGMRTVSIQVNDTKTHSGLLQPGDRVDLQVTYEVRTSEGFRVTKTAILLEYIEV 167

Query: 177 IAID--HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            A D   N+++ E + +     TL +TP QA  +  A +  +L  ++RS AD +  + E 
Sbjct: 168 FASDAFRNLEAGESKEIKAKNITLLVTPDQANFIQLANTKGELVPIMRSRADSHLITPEG 227

Query: 234 SDVWDVQE 241
            D   + E
Sbjct: 228 VDAQVIAE 235


>gi|83950065|ref|ZP_00958798.1| CpaB family protein [Roseovarius nubinhibens ISM]
 gi|83837964|gb|EAP77260.1| CpaB family protein [Roseovarius nubinhibens ISM]
          Length = 281

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 13/240 (5%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGMVVTPNIL 66
           ++V    A  A  +A  ++  +  +       N    K ++V ++K  LA G  +T   +
Sbjct: 1   MIVGIGLAGFAVYMAKSVIQGYRTELNSARAANQPAIKTVDVYVAKRALAYGDRLTKEDV 60

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLL 125
             V +P   + +G    V       + +   V   + K + +   K+   G + G+ + L
Sbjct: 61  VQVKYPARALPEGVFQTVEDLFPEGQKEFRTVLRAMEKYEALLGVKVTAPGEDAGILTKL 120

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---------SLSERKPTVTVVLSNIRV 176
            +GKRA  + +  +S V G ++P D VDV                       ++L+ + +
Sbjct: 121 ERGKRAFAIKVDTTSGVAGFLRPGDRVDVYWTGNTGRGGLRTEGDSTGDVTKLILTGVNL 180

Query: 177 IAIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           IA+D +  D     ++  T T+ ++P +  AL  AQ+  KL+L L    +   +   + D
Sbjct: 181 IAVDQSSNDQTTGAILARTVTVAVSPQEVAALAQAQATGKLTLSLLGTKEDTIAEVIEVD 240


>gi|116623254|ref|YP_825410.1| SAF domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226416|gb|ABJ85125.1| SAF domain [Candidatus Solibacter usitatus Ellin6076]
          Length = 300

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 17/249 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +M + VS V+AL+      RL                A    V+++   L  G  
Sbjct: 3   MDRRFVMVMGVSLVWALMVSAAFFRLAGGGG-------RTRAASRKQVVVATRPLPAGST 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  + ++  + PE+    G    V      +++    V   I   +P+   +L  +G+G 
Sbjct: 56  LDRDAVKLRSVPEDVFPAGAFSRV------EDVLERPVISAIQPEEPVVEARLAVKGSGA 109

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIRVIA 178
           GL  ++P G RA ++ ++    V G + P   VDV++      R  T    VL NI V++
Sbjct: 110 GLGPMIPTGMRAISVRVNDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQTVLQNITVLS 169

Query: 179 IDHNIDSDER--VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
               I +D R   ++    TL +TP +A+AL  A +   + LVLR+  D   + +    +
Sbjct: 170 AGQTITTDGRSQPIMAPVVTLLVTPGEAEALTLANTEGHIQLVLRNSTDRISAPTRGRRL 229

Query: 237 WDVQEEGKE 245
            ++     E
Sbjct: 230 HELYGAAAE 238


>gi|27378603|ref|NP_770132.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27351751|dbj|BAC48757.1| blr3492 [Bradyrhizobium japonicum USDA 110]
          Length = 329

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 114/263 (43%), Gaps = 16/263 (6%)

Query: 1   MKLTRLMGIVVSGVFALVA-GIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVG 58
           M     + I++  + A  A G+IA  +  P  V          P   +   ++   L+ G
Sbjct: 13  MSSALRLSIIIVLLLATAAFGLIAYNMNLPKQVPVAVTEQGPAPPSTVGYFVAARPLSRG 72

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRG 117
            +         +   E +  G I  +  P+A   L G LVR  +  G PI L+ ++  R 
Sbjct: 73  TLARDEDFAVRSALPERLPAGAI--LETPDAKAGLTGSLVRKFVEAGSPITLQDVLRPRD 130

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLSN 173
            G L+S+L    RA ++ +   S V G+I+P DHVDV++ +   +  P       VVL N
Sbjct: 131 RGFLASVLAPDSRAISIKVDEESGVSGLIRPGDHVDVLLTQVFEKADPARRALSEVVLGN 190

Query: 174 IRVIAIDHNIDSDERVL------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL- 226
           +RVIAID  I    R +         T +LEL P Q K +  A+ +  +SL +R+  +  
Sbjct: 191 VRVIAIDQEIVQGGRTVSSLAGKQAQTVSLELAPDQVKKITVAKQIGTISLAVRAAVEQW 250

Query: 227 NPSSSEDSDVWDVQEEGKEIQII 249
           + + +      DV  E      +
Sbjct: 251 DTADTGAMSSCDVSPEIARQNAV 273


>gi|323700358|ref|ZP_08112270.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. ND132]
 gi|323460290|gb|EGB16155.1| Flp pilus assembly protein CpaB [Desulfovibrio desulfuricans ND132]
          Length = 273

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 15/247 (6%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
             L+ I +S   A++AG+I  +  +         + EN    +    +K DL  G+ +T 
Sbjct: 6   RALVQITLSLFLAVIAGVIIFKWTNGVKQAAPTAVVENTVPVVV---AKTDLGRGVKLTE 62

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGL 121
           ++LE   F +++   G   +V      ++++G ++   +  GD +   KL D+    GG+
Sbjct: 63  DMLEIRKFTQDSRPSGAFAEV------KQVEGRVLNQTVGMGDALTPLKLADKSIMGGGV 116

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAID 180
           S+L+  GKRA  +  +    + G ++P D VDV++  ++    KP   +VL  I+VIA  
Sbjct: 117 SALITPGKRAMAVKGNEVMGLSGFVRPGDRVDVIVSLTVGRNEKPVTKLVLEQIKVIATG 176

Query: 181 HNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
             +   + + +V      TLELTP +++ L  A +   L   LR+  D     +  + V 
Sbjct: 177 TQLTPPNEEGKVASVGVYTLELTPAESERLALASTQGTLHFALRNEQDNADVRTIGTTVP 236

Query: 238 DVQEEGK 244
                 +
Sbjct: 237 QTLAALR 243


>gi|51245388|ref|YP_065272.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54]
 gi|50876425|emb|CAG36265.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54]
          Length = 285

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 115/263 (43%), Gaps = 19/263 (7%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTP 63
           RL  +V++ V A     +  + +S  +V    V+ + P +   ++ ++  D++ G  +  
Sbjct: 6   RLTFLVIAVVIAFSVSFVVYKKMSTPNV----VMEQKPGQATTDIAVAVKDMSRGSKIGS 61

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGL 121
             ++   + +E +  G   D      ++++ G +V  P+   +PI    L  +    GGL
Sbjct: 62  EDVQMATYLQETLPSGHFTD------LEQVVGRIVLSPLTTTEPILNSDLAPQDLTKGGL 115

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAI 179
           ++++   KRA  + +     V G + P   VDV++   +    R      VL NI V+++
Sbjct: 116 AAVITPTKRAMAIKVDNVIGVAGFLHPGHLVDVLVSIEKPGDTRSQITKTVLQNILVLSV 175

Query: 180 DHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED-SDV 236
                   D++V   +  TLE+   + + L  A +  ++ L LR  +D+ P  +   +  
Sbjct: 176 GTLAQESADKKVHKVTVVTLEVDLEEGEKLALAVNEGRIQLALRGYSDVEPVLTRGITKT 235

Query: 237 WDVQEEGKEI-QIIKAGVIVNKD 258
             ++    ++ + +K G    K 
Sbjct: 236 SLLKSYSPDVFKTVKGGKTAVKK 258


>gi|328953762|ref|YP_004371096.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM
           11109]
 gi|328454086|gb|AEB09915.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM
           11109]
          Length = 272

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 12/232 (5%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
           G  A  + S            +    +  + +  ++A G V+ P +L+ V  P+E+V   
Sbjct: 17  GGFAAYIASGWLKARARPAARDSVAMMPAVAAARNIAPGSVLIPELLKVVQLPKEHVAAD 76

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISI 138
              D      ++ L+G + R  I+ G+ I+  +L  +G  GG++ ++   KRA T+ +  
Sbjct: 77  AATD------LKALEGRVTRQLIVAGEVIQEHELAPKGAPGGMAGIIGNDKRAVTIKVDE 130

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIAIDHNIDS---DERVLVGS 193
           +S V G I P + VDV++    +E    P   +VL N+ V+    +I+     ER  V  
Sbjct: 131 ASGVAGFIVPGNRVDVLLSLDRNEFKNDPVTQIVLQNLPVLGTGQDIEQQKAGERPKVVP 190

Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
           T TLE+TP + + L  A     ++L LR   +     +  + V  +    K+
Sbjct: 191 TVTLEVTPEEGERLALAAKEGTITLALRGWTEKAAIPTAGARVSALLTPEKK 242


>gi|197123318|ref|YP_002135269.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K]
 gi|196173167|gb|ACG74140.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K]
          Length = 307

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 16/216 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            E            V+++  DL     +  ++L  V +P  NV +G   D        +L
Sbjct: 48  VETRTAAARVSTTPVVVATIDLPEATTLRADVLSVVQWPSANVPEGAASDPA------KL 101

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
              +VR  ++KG+P+   +L     G GL+++LP G RAA + ++    V G I P D V
Sbjct: 102 VDRVVRARVIKGEPVVESRLAAADAGHGLAAILPPGMRAAAVPVNDVVGVAGFIHPGDSV 161

Query: 153 DVVMVRSLSERKPT-----VTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQ 203
           DV++V        +       ++L N++V+A+   +  +    E+ L  + ATL +   Q
Sbjct: 162 DVIVVMRPETNGNSNPAFFSKIILQNVQVLAVGKELGRNERSLEKSLPATVATLMVDSEQ 221

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
           ++ L  AQ+   + L LRS  D     +   +   +
Sbjct: 222 SEKLALAQTKGSILLTLRSGIDRELVDTTGVNPAGL 257


>gi|218513094|ref|ZP_03509934.1| pilus assembly protein [Rhizobium etli 8C-3]
          Length = 202

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 128/202 (63%), Gaps = 4/202 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AMR+     V T+          +NVL+S G+LAVG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I ++ +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LEEGSVHWMAWPQGGVVPGLITEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNIDSDE---RVLVGSTATLE 198
           D  I   +   + +VG+TATLE
Sbjct: 181 DQQIQEKDDGSKAVVGTTATLE 202


>gi|329900777|ref|ZP_08272581.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327549366|gb|EGF33934.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 323

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 11/236 (4%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + + V+    + A ++A   +S    Q   +        I V+++KGDL  G V++ + +
Sbjct: 16  LVLGVALTIGVGAALLARSFLS---DQIASIEARGKGPTIPVVVAKGDLNKGTVLSADNV 72

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
                P E      +     P+    +DG  +   +  G+ +    +  +     S+ L 
Sbjct: 73  AVRQIPREFAHSASV----FPDQFARIDGQPIAYGLKSGESVMWGLMEGKKVPTFSARLE 128

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
            G RA T+ +   +++ G+++P D +D+++      +K     +L  ++V+A       D
Sbjct: 129 AGHRAMTVPVDEINSISGLLEPGDSIDLIVTVDHGGKK-ITFPLLQAVQVMATGQRAVDD 187

Query: 187 ERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
            R       ST TL  TP QA+ ++ A+   K++ +LR+ AD  P +    D+  +
Sbjct: 188 PRTGERRQFSTVTLNTTPEQAQNVIVAREAGKITALLRNPADQAPMAGTRGDLAAL 243


>gi|294139869|ref|YP_003555847.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12]
 gi|293326338|dbj|BAJ01069.1| Flp pilus assembly protein CpaB, putative [Shewanella violacea
           DSS12]
          Length = 288

 Score =  161 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 27/269 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M + RLM   V   F  +AG+I + L      +   + TEN      +L++K  +  G  
Sbjct: 1   MTVKRLMYFSV---FISLAGLIGLYLSISAPQKQINIKTENVRH--EILVAKQLIKSGQR 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
            + ++ EW A  E+ + +           + + +  ++      G  + L   +    GG
Sbjct: 56  FSASLFEWQALNEDQLTNLVDYIDRDKFDILKFNDSVLVSSFTAGHIMSLSDFLKPEEGG 115

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170
            LS  L  G RA ++ +   +A  G++ P D VDV++          R    +   V  +
Sbjct: 116 FLSVSLRPGYRAVSVPVDQVTANSGLVGPGDFVDVLLLASQEQELRTRGNDTQSLYVKTI 175

Query: 171 LSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSVAKLSLVL 220
             N+RV+A +H +  ++ +             S  TLE+ P QA  ++ A  +  L+LVL
Sbjct: 176 ARNVRVLAFNHAVKVEQYIAAQKEYKGFIPDDSAVTLEVLPKQANRIILANQLGILTLVL 235

Query: 221 RSIADL-NPSSSEDS-DVWDVQEEGKEIQ 247
           RS  D  + ++S+D  ++ D+  + K +Q
Sbjct: 236 RSNNDSVDEANSQDQINIADIFPDIKRVQ 264


>gi|261251599|ref|ZP_05944173.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
 gi|260938472|gb|EEX94460.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
          Length = 279

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 27/271 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM + +     L A  IA+ L++P   Q+E+        F  VL++K  + VG  
Sbjct: 1   MTAKRLMLLSLI----LSAVGIAILLLNPSKPQSEQRQAAAEV-FKRVLVAKQGVVVGQP 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            T N+ +W +  E+ +   ++D + +    + +L   +    I  G  +  +      +G
Sbjct: 56  YTLNMFQWKSVSEQELN-NYLDFISEEEFSRLDLKPGIAHTAIQSGQVMSSDDFETPASG 114

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTV 169
             ++  +  G RA ++ +   +A  G ++P D VD++++ S  E             VT 
Sbjct: 115 ISMAFKVQSGHRAISVPVDAVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTT 174

Query: 170 VLSNIRVIAIDHNID----SDERVLVG------STATLELTPMQAKALVAAQSVAKLSLV 219
           +  ++RV+A +   D       R   G      S+ +LE+TP QA  +V A  + KL+L 
Sbjct: 175 IAIDVRVLAFNQYADPQDFQKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLS 234

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           LR   ++     E   V          Q+  
Sbjct: 235 LRGAGEMISDVDEKYTVTSTLINPDSKQVAP 265


>gi|302037440|ref|YP_003797762.1| pilus assembly protein CpaB [Candidatus Nitrospira defluvii]
 gi|300605504|emb|CBK41837.1| Pilus assembly protein CpaB (modular protein) [Candidatus
           Nitrospira defluvii]
          Length = 403

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 24/256 (9%)

Query: 1   MKLTR--LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           M   R  L+ + + G+  L   + A + +     QT  +  E  ++ I + ++  DLA G
Sbjct: 1   MTPQRRALIVVALGGLIGLATSLWAYQWLQDVTEQTR-LDMEAKSRTIPIAVAAADLAWG 59

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
            V+  + +  V FP + V +G         + + L G +V + + + +PI   KL     
Sbjct: 60  AVLADDAVRMVPFPADTVPEGHF------ASAETLKGRVVIMDVKQHEPILESKLAPATV 113

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNI 174
            +GG++++    KRA  + +    AVGG IKP D VDV+    R      P   VVL N+
Sbjct: 114 TSGGVAAVTHPEKRAVAVKVDDVVAVGGFIKPGDRVDVLTTVRRPGKTDDPVTKVVLENV 173

Query: 175 RVIAIDHNID-----------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           RV+A+  + +            + ++ V S  TLE+ P +A+ L  A +  K+ L LR+ 
Sbjct: 174 RVLAMGQDTERAAQTDKAAKNQETKLSVPSVMTLEVAPDEAEKLALASTEGKVQLALRNP 233

Query: 224 ADLNPSSSEDSDVWDV 239
             +   ++  + +  +
Sbjct: 234 QSVTAVATTGATISSL 249


>gi|85705149|ref|ZP_01036249.1| CpaB family protein [Roseovarius sp. 217]
 gi|85670471|gb|EAQ25332.1| CpaB family protein [Roseovarius sp. 217]
          Length = 289

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 19  AGIIAMRLVSPHHVQT--EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           A  +A   +  +  Q   E        + +++ ++   +  G  +T   +  +AFP++++
Sbjct: 19  AVYMAKTYIDGYQQQLALERQQRAPNIETVDIYVANQLIKYGEPLTTEAVRLIAFPKDSL 78

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMD 135
            +G      +               + K +PI   K+   G   G++S L +G RA  + 
Sbjct: 79  PEGAFSSTEELFPSGASVVRKALRRMEKNEPILAVKVTKPGEEAGITSQLERGMRAFAIK 138

Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDHNIDSD 186
           + ++S V G ++P D VD+    S+                 ++ + +++IA+D   D D
Sbjct: 139 VDVTSGVSGFLRPGDTVDIYWTGSIGAGNLRTEEDSTGEVTKLIDTGVKLIAVDQVADMD 198

Query: 187 -ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
               +V  T  + +TP Q  AL  AQS  +LSL L   +D   + S + D
Sbjct: 199 MTEAVVARTVAVAVTPNQVAALAQAQSTGRLSLSLVGASDDTVAQSIEVD 248


>gi|84687278|ref|ZP_01015158.1| CpaB family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664711|gb|EAQ11195.1| CpaB family protein [Rhodobacterales bacterium HTCC2654]
          Length = 274

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 8/231 (3%)

Query: 13  GVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
              A  A  +A   +  +      E        +   + + K  +A G  +T   +    
Sbjct: 3   VGLAGFAVYMARDYIGNYQAALEQERAARAQMVQTAEIYVVKESVAYGDRITDENIRLTR 62

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGK 129
           FP + + +G      +     E     V   + K + +   K+ + G + G+++ L  G 
Sbjct: 63  FPVDAIPEGAFKTEEELFPQGEKRYRTVLRAMEKDEALLAVKVTEAGADAGVAARLASGM 122

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNIDS 185
           RA  + + ++S V G ++P D VD+      S      +    ++ +NIR+IAID   D+
Sbjct: 123 RAFAIRVDVASGVSGFLRPGDKVDIYWTGRGSSDSVTSQEVTKLIQTNIRIIAIDQMADT 182

Query: 186 DER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           D     V  T T+E TP Q  AL  AQ+  +++L L    D   + + + D
Sbjct: 183 DRTAPTVARTVTIEATPEQVAALAQAQATGRMALSLVGAQDDTVAEAVEID 233


>gi|323493504|ref|ZP_08098626.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
 gi|323312327|gb|EGA65469.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
          Length = 280

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 117/271 (43%), Gaps = 27/271 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM + +     L A  I++ L+S    + ++        F  VL++K  + +G  
Sbjct: 1   MTAKRLMLLSLV----LSAVGISILLLSQSEQKNDQQQAAAET-FKRVLVAKQKVDIGQP 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPN-AMQELDGVLVRVPILKGDPIRLEKL-VDRGN 118
            T N+ EW    ++ + D ++D + +   ++Q+    +    IL G  +        +G 
Sbjct: 56  YTLNMFEWKQVSQQEL-DNYLDYISREAFSVQQFTPGIAHSEILAGQVMSAGDFSTPKGG 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTV 169
             L+  +  G RA ++ +   +A  G ++P D VD++++ S  E             VT 
Sbjct: 115 VSLAFKVRNGYRAISVPVDSVTANSGFVQPGDKVDILLLGSEVEELKKYDNKVSGLYVTT 174

Query: 170 VLSNIRVIAIDHNIDSD----ERVLVG------STATLELTPMQAKALVAAQSVAKLSLV 219
           +  ++RV+A +   D+D    +R   G      S+ +LE+ P QA  +V A  + KL+L 
Sbjct: 175 IAKDVRVLAFNQYSDADNFQKKRSAYGADLPDNSSVSLEVNPEQATQIVLANQIGKLTLS 234

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           LR   + +        V   Q   +  Q+  
Sbjct: 235 LRGAGEDDSDDQSIYTVKSTQINPESKQVAP 265


>gi|149915643|ref|ZP_01904169.1| CpaB family protein [Roseobacter sp. AzwK-3b]
 gi|149810535|gb|EDM70378.1| CpaB family protein [Roseobacter sp. AzwK-3b]
          Length = 290

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 14/249 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT--EEVITENPAKFINVLISKGDLAVG 58
           M+L   + +V+    A  A  +A   +  +  Q   E        + + VL++K  L  G
Sbjct: 1   MRLVFGLVLVLGLGLAGFAVYMAKSYIQGYQNQLALERAQRAPQIETVEVLVAKTPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             + P+ +  V FP++ + +G    +       E +   VR  +   + I   K+   G 
Sbjct: 61  QKLKPDAVRLVKFPKDALPEGVFMTMDALFPKGEQEPRAVRRAMEVNEAIMAVKVTAPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----------KPTV 167
           + G+SS L +G RA  + + ++S V G ++P D VDV     +                 
Sbjct: 121 DAGISSQLAQGMRAFAIKVDVASGVSGFLRPGDRVDVYWTGQVRGGSDVRTEGNSMGDVT 180

Query: 168 TVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            ++ + +++IA+D   D +  + ++  T T+   P Q  AL  AQ+  +LSL L    + 
Sbjct: 181 KLIETGVQLIAVDQISDENTTQAIIARTVTVAARPQQVAALAQAQATGRLSLSLVGTDEE 240

Query: 227 NPSSSEDSD 235
           + +   + D
Sbjct: 241 SVAEVIEVD 249


>gi|115358170|ref|YP_775308.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
 gi|115283458|gb|ABI88974.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
          Length = 342

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 17/236 (7%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
            V  + AGI A  L    +V             + V ++  DL  G+++  N L W    
Sbjct: 8   AVLIIAAGIGAFIL-RQLYVSASTPPPPGNTADVRVRVAAADLPEGLLLRDNDLAWKPMA 66

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRA 131
              V  G   +        +L G L+R  +  G PIR + ++  G    L++ L  G RA
Sbjct: 67  RAQVPAGAFVESQPG---ADLKGALLRSRVEAGAPIRADNVISAGAPDFLAAALQPGMRA 123

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRVIAIDHN---- 182
            ++ +   S   G+I+P D VDVV+ + +     T        V+   RV+A+       
Sbjct: 124 ISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGSATTPGTFEAETVVRRARVLAVGSEFQRA 183

Query: 183 ---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
                + +  +   T TLE+ P  A+ ++ A  +  LSL LRS A  +   +   D
Sbjct: 184 KGPASAPDAPVRARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRRQAAGGD 239


>gi|326797326|ref|YP_004315146.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1]
 gi|326548090|gb|ADZ93310.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1]
          Length = 315

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 113/277 (40%), Gaps = 37/277 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK + +  +  + +FAL   ++   L+ S    +T   +      +  VL++   L  G 
Sbjct: 1   MKASSVFFVSGALIFALGGALLGSALLTSEPPPKTVTKVVPKKPNYRAVLVASNTLRPGD 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            +    +EW A  ++   D F   +   +   +L G  V  PI  G  +  + LV  G  
Sbjct: 61  FMNATSIEWRAADKQYPEDAFF--LKGLDEKSQLYGATVTQPIPAGTELESDLLVSPGEP 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------- 165
           G ++S+L  G RA  +   + ++  G+I   D VDV++       +              
Sbjct: 119 GFIASVLKPGMRAVAIPADVVTSNAGLISGGDRVDVILSLKRDYEQGADNNPLATIKLPK 178

Query: 166 -TVTVVLSNIRVIAID----------HNIDSDERVLVGS-------TATLELTPMQAKAL 207
                +L N+RV++++            ++S +     S       T TLE+ P   + L
Sbjct: 179 LASQTLLRNVRVLSLNGTLDAFREKVQKVESKKEKKTDSNKRKSYETVTLEVLPKDVERL 238

Query: 208 VAAQSVAKLSLVLRSI--ADLNPSSSEDSDVWDVQEE 242
             A+ V  L L LRS+   DL  S+S + D  + Q E
Sbjct: 239 TVAREVGILQLALRSVQGQDLALSTSPEKDSKESQSE 275


>gi|144898050|emb|CAM74914.1| Flp pilus assembly protein CpaB [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 288

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 23/275 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ ++V+ + A +  ++A R           V  ++    + VL+   D+A G  
Sbjct: 1   MRPLAIVLVIVAVLAAGLTALLAKRWTDKQSTARPTVAADS----VEVLVLARDVATGSA 56

Query: 61  VTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGN 118
           ++   L +  +P   V  G F+      +      G + R P+ +G+P          G+
Sbjct: 57  LSDADLRYENWPA--VNAGRFMTRKDGDDPKARAIGAVARRPLSEGEPFTPSATFTRDGS 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------- 165
           G L+ +L  G RA ++ IS +SAV G + P D VDVV+                      
Sbjct: 115 GILAGMLAPGMRAVSVAISNASAVSGFVVPGDRVDVVLAADFQRADSEAAGKGGGAIVRY 174

Query: 166 TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
               VL++++V+A+D       D   + G TATLE++P QA+ LV A  + +LSL+LR +
Sbjct: 175 AAETVLADVKVLAVDQQFSKGKDGPTIQGKTATLEVSPDQAEILVTAGLMGQLSLILRGV 234

Query: 224 ADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258
              +  +          +    ++ +  G      
Sbjct: 235 GPQDAGNQTKRPFTADTQASAAMRALAGGSAKPAA 269


>gi|225181998|ref|ZP_03735430.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
 gi|225167283|gb|EEG76102.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
          Length = 229

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 18/234 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +    ++S + ALVA       ++    Q+     ++ A    +L+++ ++     
Sbjct: 1   MKGKKF--FLLSLILALVAAGAIFHYLNEMERQS-----KSAANLTTILVAREEIPARTR 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           ++ ++      P++ +    I +        ELDG   R  ++ G+ +   +LV ++   
Sbjct: 54  LSASMFTTAEVPQDAIHGDAIRETS------ELDGAYARERLVAGEQVLSARLVFEQSET 107

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIRVIA 178
           GLS  +  G RA T+ ++  S V G I P D+VD ++    +E + T   VV S I+V+A
Sbjct: 108 GLSYKVSDGHRAVTVPVNNVSGVAGYILPGDYVDAIVTIESTEDEDTVTKVVESKIKVLA 167

Query: 179 IDH-NIDSDERVLVGSTATLELTPMQA-KALVAAQSVAKLSLVLRSIADLNPSS 230
                ++ D   L+  T TL+ TP  A  A++ A     L LVLR + + N  +
Sbjct: 168 SGQYTVEQDREQLIVETVTLD-TPADAVTAIIQASERGSLRLVLRPVEESNDRA 220


>gi|332284570|ref|YP_004416481.1| putative secreted protein [Pusillimonas sp. T7-7]
 gi|330428523|gb|AEC19857.1| putative secreted protein [Pusillimonas sp. T7-7]
          Length = 326

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 13/233 (5%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L  ++++GV  L A   A + +     + + +  +     +  +++  DL  G  + 
Sbjct: 7   NRSLAMLLLAGVAGLGAAWAAKQHIDG---KVQLLEAQARTPMVERIVAAYDLPAGTRLG 63

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
           P  L    FP      G +     P    EL G ++R P+  GD +       + +   S
Sbjct: 64  PEHLALRHFPANVASSGSL----APGRFTELTGTMLRAPLRGGDAVLEVHTTGQDHAAFS 119

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID-- 180
           S L  G+RA +M +   ++V G+++P D +D+ +     +R+     +L  + V+A D  
Sbjct: 120 SHLSAGRRAISMPVDAINSVSGLLQPGDLIDLYVSFEY-QRRHITAPLLQGVLVLATDAN 178

Query: 181 -HNIDSDERVLVGS--TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              +        GS  T TL+ +P  A  LVAA+    ++ VLR   D+  S 
Sbjct: 179 TQFVQDAGHASRGSYATVTLDASPEDAVKLVAARQGGTITAVLRPPQDVASSQ 231


>gi|197106488|ref|YP_002131865.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
 gi|196479908|gb|ACG79436.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
          Length = 310

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 7/244 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M++  ++ +  S V  L A ++A + V P     +       A  + V+++  ++  G  
Sbjct: 1   MRVVTIVSLAASAVLGLGALVVA-KTVLPGAGAAKGAAVVQEAPGVPVVVAAREIKYGDK 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           + P +L  V  P   V  G    V Q  +  +    +    +   +P+   K+   G+  
Sbjct: 60  LVPGMLTIVNAPAGLVPQGAFQTVDQVLSADKGGPPVALTRLAAREPVLPTKISGPGSRP 119

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIR 175
            +S+ + +G RA T+ +  SS VGG   P D VDVV++R L+   P       VV+ N R
Sbjct: 120 TVSAEVGEGMRAYTLKVDASSGVGGHALPGDRVDVVLLRDLTPSGPDRNFISYVVVQNAR 179

Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+ +D N D + E+    STATLE++  +++ L  A ++  LSL LR   +   + +   
Sbjct: 180 VLGVDLNADPTSEKPATPSTATLEVSVEESQKLAIAATLGTLSLALRRSGEAEIADAGPL 239

Query: 235 DVWD 238
              D
Sbjct: 240 RTGD 243


>gi|149912018|ref|ZP_01900612.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
 gi|149804917|gb|EDM64951.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
          Length = 288

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 110/269 (40%), Gaps = 27/269 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RL+ + V      + G+I +       V +     ++  K   VL+S  D+ +G  
Sbjct: 1   MNAKRLVYLSVCM---SLLGLIWLFFSLSAPVNSTP--KQDTVKTYEVLVSTQDVVIGRP 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
            + ++  W    E +V D          ++Q L   +     + G  +     +    GG
Sbjct: 56  YSASLFAWKTVDESSVRDRIDFIDKANFSIQALKNTVAAADFVTGQILSPSDFLKPEQGG 115

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170
            LS +L    RA ++ +   +A  G+I P DHVDV++          R    +   V  +
Sbjct: 116 FLSVMLRPNYRAVSIPVDEVTANSGLIGPGDHVDVLLLASKSQELRSRGNETQSLYVKTI 175

Query: 171 LSNIRVIAID---HNIDSDERVL-------VGSTATLELTPMQAKALVAAQSVAKLSLVL 220
             N+RV+A +         E+           ST TLE++P+QA  +  A  +  LS+VL
Sbjct: 176 AQNVRVLAFNDALQLARYMEKQKHNKGVIPDNSTVTLEVSPLQANQITLANQLGTLSMVL 235

Query: 221 R--SIADLNPSSSEDSDVWDVQEEGKEIQ 247
           R  +  + + +     +V D+    K++Q
Sbjct: 236 RSKNSQETDSAVIPAVNVDDILPAIKQVQ 264


>gi|283779854|ref|YP_003370609.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
 gi|283438307|gb|ADB16749.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
          Length = 372

 Score =  158 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 108/247 (43%), Gaps = 20/247 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M++  L+ I ++    LVA I   +++                +   +L++  D+ +   
Sbjct: 1   MRMKSLILIFIALGCGLVASIGISQVMERGGSGAAPA-----MEMEQILVALADIDIDAK 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    ++   +P+  V +G +       ++ E++    +    KG+PI L K+ D+ N  
Sbjct: 56  LNAENVQLEEWPKSKVPEGAVR------SLDEVEAKFAQQRFFKGEPILLAKISDQ-NVN 108

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178
               +P+G R   + +   + +   I P D VDV++    SE  ++     +L N+RV A
Sbjct: 109 PMIRIPEGYRVMPVKVDDETVLKA-ISPGDRVDVMVFLRRSEEIKQTATYTILRNVRVFA 167

Query: 179 IDHNIDSD----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           ++ N + D     + +   T +L + P Q++ L  A  + K+ L +R   D    + E  
Sbjct: 168 VNSNTERDLETKGQDVNARTVSLIIKPQQSRELAVASQIGKIILTMRRP-DETDEAGEGE 226

Query: 235 DVWDVQE 241
           DV  + E
Sbjct: 227 DVTPITE 233


>gi|319783875|ref|YP_004143351.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169763|gb|ADV13301.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 301

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 25/252 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFIN------VLISKGDLAVGMV 60
            I ++ VF  ++   A   V S     +EE  +  PA  +       ++++   L  GM 
Sbjct: 1   MIGIAAVFGAISIFAADFWVKSQAKADSEEKTSSIPAPVVPKVEFKTIVVANAPLRYGME 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           +    L  + + +E+V  G    +   NA+      +V  PI   +P+ L KL    G  
Sbjct: 61  LDRAQLSEIPWSQESVPQGAFTTI---NALLADGSRVVLSPIEVNEPVLLTKLSGPNGRA 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------T 166
            LS+++  G RA T+     + VGG + P D VDVV+ R   E +              T
Sbjct: 118 TLSNMMTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTIT 177

Query: 167 VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             +V+++ +V+++    D  +    + ++ T+E+T   A+ +  A++V  LSL LRS ++
Sbjct: 178 SEIVVADAKVLSVGQGADERQTTPQISNSVTIEVTTDGAQKVALARTVGTLSLSLRSASE 237

Query: 226 LNPSSSEDSDVW 237
                S  + + 
Sbjct: 238 GADGKSGVTTIS 249


>gi|172062958|ref|YP_001810609.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
 gi|171995475|gb|ACB66393.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
          Length = 342

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 17/236 (7%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
            V  + AGI A  L    +V             + V ++  DL  G+++  N L W +  
Sbjct: 8   AVLIIAAGIGAFIL-RQLYVSASTPPPPGNTADVRVRVAAADLPEGLLLRDNDLAWKSMA 66

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRA 131
              V  G   +        +L G L+R  +  G PIR + ++  G    L++ L  G RA
Sbjct: 67  RAQVPAGAFVESQPG---ADLKGALLRNRVDAGAPIRADNVISAGAPDFLAAALQPGMRA 123

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRVIAIDHN---- 182
            ++ +   S   G+I+P D VDVV+ + +     T        V+   RV+A+       
Sbjct: 124 ISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGSATTPGTFEAETVVRRARVLAVGSEFQRA 183

Query: 183 ---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
                + +  +   T TLE+ P  A+ ++ A  +  LSL LRS A  +   +   D
Sbjct: 184 KGPASAPDAPVRARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRRQAAGGD 239


>gi|148261012|ref|YP_001235139.1| SAF domain-containing protein [Acidiphilium cryptum JF-5]
 gi|326404412|ref|YP_004284494.1| putative pilus assembly protein [Acidiphilium multivorum AIU301]
 gi|146402693|gb|ABQ31220.1| SAF domain protein [Acidiphilium cryptum JF-5]
 gi|325051274|dbj|BAJ81612.1| putative pilus assembly protein [Acidiphilium multivorum AIU301]
          Length = 275

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 20/249 (8%)

Query: 6   LMGIVVSGVFALV-AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
           L+ I +  + AL  AG   +  +  H             K + +L +   LA G ++ P 
Sbjct: 2   LLRIALFILLALGLAGFGTVAWLDMH----PSHPHAKAPKMVALLATGRPLAPGTLLQPA 57

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSS 123
                  P   V    + D   P       G +VR  +  GD +  + ++  G+ G L++
Sbjct: 58  DFVAENRPPSKVPADAVPDT--PANRAAYTGAMVRHRLSAGDLLATDIVIRPGDHGFLAA 115

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSNIRVI 177
           +L  G RA ++ +   +   G+I P DHVD+++ + L+       ++     VLS++RVI
Sbjct: 116 VLQPGMRAVSVGVDAITGAAGLIWPGDHVDLLLTQHLTGANLLPTQRVAAETVLSDVRVI 175

Query: 178 AIDHNIDSDERVL------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           AID  +                T TLE+TP QA+ +  A  +  LSL++R        + 
Sbjct: 176 AIDQRLVQGASGTHPAAKNTARTVTLEVTPEQAERVEVAAHLGPLSLIVRPSEAARGPTP 235

Query: 232 EDSDVWDVQ 240
           +   V+  Q
Sbjct: 236 KPPPVFSGQ 244


>gi|84685163|ref|ZP_01013062.1| pilus assembly protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666895|gb|EAQ13366.1| pilus assembly protein [Rhodobacterales bacterium HTCC2654]
          Length = 275

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 10/254 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   L+        A+    +A R++         V      + + ++ +  D+  G  
Sbjct: 1   MRKAPLILAASGIALAVGCAAVAQRVLGGSEQAAPTVAV---PETVVLIAAARDIRFGEP 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119
           +  + L    +P + V  G  D        +          I +GD +    + + G + 
Sbjct: 58  IRRDDLVPQTWPADLVPTGAFDSATVLLGAEGTAPRRATQTIREGDVVLAANVSEFGASV 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            + S L  G RA  + ++  +AVGG + P DHVD+V+ +   +   T  V+L + RV+A+
Sbjct: 118 TIGSTLSPGTRAVAIRVNADTAVGGFVSPGDHVDIVLTQGRGDTLRTG-VILQDTRVLAV 176

Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS----D 235
           D + ++        T T+E+ P  ++ LV AQ   +LSL+LR+   +  +   D     D
Sbjct: 177 DQDTEA-RGARKARTITVEVAPRDSQRLVLAQEAGQLSLILRNDDAIGDTGEMDQITLRD 235

Query: 236 VWDVQEEGKEIQII 249
           VW   E   E +++
Sbjct: 236 VWGDPEPTPEPEVV 249


>gi|148976308|ref|ZP_01813032.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
 gi|145964402|gb|EDK29657.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
          Length = 290

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 105/229 (45%), Gaps = 22/229 (9%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
             +++ L S  +  +E+V      + I VL+    + +G   TPN  +W A P   + + 
Sbjct: 16  VALSVLLFSQGNNASEKVSVPTTQQTIKVLVPSRTIDIGQNYTPNSFQWKAIPLGEL-EN 74

Query: 80  FIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDIS 137
           +ID V   +  ++     + +  +++G  +    + +   G  LS  L  G RA ++ + 
Sbjct: 75  YIDYVTPESISEDHSMSGIAQTKLVEGSVLSHADITEPKGGYSLSFKLQPGYRAISVPVD 134

Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVVLSNIRVIAID--HNIDSD 186
             +A  G I+P D VD++++ S            +   VT ++ + RV+A +     +S 
Sbjct: 135 QITANSGFIQPGDRVDILLLGSQDGELLRYGNSSQGLYVTTIVHDARVLAFNNTQAAESY 194

Query: 187 ERVLVG--------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           ++V           S+ +LE+TP QA  +V A+ + KL+L LR   D  
Sbjct: 195 QKVRDSYGAVIPDNSSVSLEVTPEQANQVVLAEQLGKLTLALRGQNDTQ 243


>gi|147677784|ref|YP_001211999.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum
           SI]
 gi|146273881|dbj|BAF59630.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum
           SI]
          Length = 242

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 27/239 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ + V    A   G      V   +++   VI+     F  V +++  +     
Sbjct: 1   MKNRLILILAVIVGLAAAGGT----YVYLDNLKKSYVIS---GDFTRVAVARQRITARTR 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +T  ++E    P + + +          + +E+ G + +  IL G+ I  ++L    +  
Sbjct: 54  ITAQMIELKDIPAKYINELA------AVSPEEIVGKIAKSEILPGEQILRDRLAQGSSAT 107

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSN 173
            GL+ +L  GKRA T+ ++  S + G+IKP D VDVV           E+    ++++ +
Sbjct: 108 DGLAFMLQPGKRAVTVAVNEVSGLAGLIKPGDRVDVVGTFDLQGAPGQEKSSITSILIQD 167

Query: 174 IRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           + V++ D           + ++     T TL +TP QA+ LV       + L+LR   D
Sbjct: 168 VDVLSTDQATIPLQENGQNGKKEAPARTVTLSVTPEQAQPLVLCSEKGTIRLILRPATD 226


>gi|322434103|ref|YP_004216315.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9]
 gi|321161830|gb|ADW67535.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9]
          Length = 291

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 19/230 (8%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M   RL    +++ + + +   +  R +  H    E V  ++       + +   L  G 
Sbjct: 1   MNGRRLTTAFLIALLISGLCTWVLSRKMGTH--AAERVADQHY------VAASRPLQSGE 52

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            + P+ +E V +P  N   G           ++L G  V  P+ K  P+  + L   G+G
Sbjct: 53  QLKPDSMELVNWPASNPIAGGFLKP------EDLVGRSVLYPVEKDQPLTDKLLSTAGSG 106

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVI 177
            GL++ +P G RA ++       V G + P  H+DV++  R+    +P    VL +  V+
Sbjct: 107 PGLAARIPAGMRAISLKSDEIMGVAGFLSPGSHLDVLVTYRTDKNPEPVTLTVLQDAEVL 166

Query: 178 AIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           A    I  D D + +  +  TL LTP  A+  V A S   +  +LRS +D
Sbjct: 167 AAGQKIQPDPDGKPVTATVVTLLLTPEDAQRAVLASSQGAIHFILRSGSD 216


>gi|148253053|ref|YP_001237638.1| hypothetical protein BBta_1513 [Bradyrhizobium sp. BTAi1]
 gi|146405226|gb|ABQ33732.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 309

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 23/244 (9%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           +   S    +   V+  +      VL++   +A+G ++    + W       V  G++  
Sbjct: 23  IAWFSQMRSRPVAVVERSVESRPAVLVAARTIALGTLLRKEDIAWKDVMPGEVRPGYLMR 82

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAV 142
                A  E  G + R    + +P+   + V  G+   L+++L  G RA ++ +  + + 
Sbjct: 83  GQVSEA--EFLGAISRRNFAQDEPLIASEFVKPGDRQFLAAVLKPGSRAISIFVDAAQSA 140

Query: 143 GGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSNIRVIAIDHNIDSDER-------- 188
            GM  P D VDV++ +S  E      RK     +L ++RVIAID ++             
Sbjct: 141 AGMALPGDRVDVILTQSFGEQATDPGRKTVSETMLRDVRVIAIDQSLTPSTNVAAAISTE 200

Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVL----RSIADLNPSSSEDSDVW--DVQEE 242
             +  T TLEL   QA+AL+ A  + K  L +    R   +     +E   VW  DV   
Sbjct: 201 ARIPKTVTLELLERQAEALMVAAQLGKFQLAVLPLERVAVEHPEEQTEAGPVWASDVSPA 260

Query: 243 GKEI 246
            +E+
Sbjct: 261 LREV 264


>gi|254461000|ref|ZP_05074416.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium
           HTCC2083]
 gi|206677589|gb|EDZ42076.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 286

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 14/243 (5%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI------SKGDLAVGMV 60
           M   V  +  +    +A+ +   +  Q +  + E  A    V+       +   L+ G  
Sbjct: 1   MIFGVVLLIGIALAGVAVHMTQKYVNQHKAALLEAQANKTPVVPTVPVFVANRKLSYGDE 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119
           +    +    +P   +  G      +   + +     V     K + I   K+ + G + 
Sbjct: 61  IKLKDIAVAQWPSNALPKGIFQSKEELFPIDQAGARYVMRATEKFEAILAVKITEPGKSV 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSN 173
           GL S L  G+ A T+ +  +S V G ++P ++VDV     +              ++ S 
Sbjct: 121 GLQSRLEPGQSAFTIKVDSTSGVSGFLRPGNNVDVYWTGKVQANGEQRKSRTVTRLIESA 180

Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +R+IAID + + + ++  +  T T+ +T +Q  +L  AQS  +L+L L    D   +   
Sbjct: 181 VRIIAIDQSANEEVKKASIARTVTVAVTQLQGASLTQAQSTGRLNLSLVGERDETIAELI 240

Query: 233 DSD 235
           + D
Sbjct: 241 EVD 243


>gi|302391028|ref|YP_003826848.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501]
 gi|302203105|gb|ADL11783.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501]
          Length = 278

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 114/244 (46%), Gaps = 16/244 (6%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + IV++ +  L+       ++       +E + E P    +V+++K ++     +T + +
Sbjct: 5   VVIVIAVILGLITSGAVYFMMDN---MQQEAVKEQPK--ASVVVAKQNIEPREQITRSKV 59

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSL 124
           +    P+E V    +  + Q      L        I+ G+ +   +L+ +   + GL+  
Sbjct: 60  QLKQVPQETVHSQAVTSISQAVEKFALK------DIISGEQLLKPRLLGKEEVSSGLAFN 113

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-TVVLSNIRVIAIDHNI 183
           L   KRA T+ ++  S V G + P D+VDVV V S  E + TV   VL  ++V+A+  ++
Sbjct: 114 LADDKRAVTVPVTEVSGVAGFLTPGDYVDVVSVFSTYEAQQTVAKTVLQKVKVLAVAQDM 173

Query: 184 --DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
             + D++  V  + TL +   +A+ LV A    ++ LVLRS  + + S S      ++  
Sbjct: 174 VRERDQKPKVTKSVTLGVGLAEAEKLVLADRKGEIRLVLRSAQNESFSMSNGVKFEELVG 233

Query: 242 EGKE 245
             +E
Sbjct: 234 NLEE 237


>gi|327540753|gb|EGF27320.1| Pilus assembly, Flp-type CpaB [Rhodopirellula baltica WH47]
          Length = 403

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 103/247 (41%), Gaps = 20/247 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   +  ++++ V   +A I   + +         V        + + ++   + +   
Sbjct: 30  MRNKSVF-LILACVCGTIAAIGVSQWMQAQSTGQSSVA------TVEIFVTAKTIDIAEE 82

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + +    +P + V  G          +++++G   R    +G+P+   KL+   NG 
Sbjct: 83  ITADKIRLEQWPADRVPTGA------SGKLEDVEGKFARQRFYEGEPVMPVKLMADANGS 136

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178
            S  +P G    +M     S+V  +++P D VDV+     SE   + T   VL+ +RV A
Sbjct: 137 -SQTIPVGFSVVSMRADPESSVATLVRPGDRVDVMAYFVKSELIPETTAKTVLTGVRVFA 195

Query: 179 ID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +D      +DS+       + +L +      A   A  + K+ L L + +D+N +   ++
Sbjct: 196 VDGRTEREVDSEAEAKPARSISLLIHKKDTPAWTYASELGKIRLTLGNPSDINETKDGET 255

Query: 235 DVWDVQE 241
           D    QE
Sbjct: 256 DGGAGQE 262


>gi|87199533|ref|YP_496790.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
 gi|87135214|gb|ABD25956.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
          Length = 260

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 13/218 (5%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           A    ++++   +  G  +T        +P   V  G   ++            +    I
Sbjct: 4   ASLTRIVVASQAIEFGKPLTNTNTRLADWPAGTVPPGAFTNLA-----DAQRNRIAMQAI 58

Query: 103 LKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-- 159
             G+PI   ++    G   L++ LP G  A ++ IS  + V G ++P D VD+++ R   
Sbjct: 59  AAGEPILASRVTGTDGRATLAAALPPGMVAVSLPISDVTGVSGFVRPGDLVDIILTRQIP 118

Query: 160 ---LSERKPTVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAK 215
                ++     V+L  + V+ ID   D S    +VG TAT+++  + A+ L  A+ +  
Sbjct: 119 GEGAGQQDKMTDVILRQVAVLGIDQVADKSKTEAVVGKTATVQVDTLGAQKLALARELGT 178

Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253
           LSL LRS+A +  +    + V      G+++ I +   
Sbjct: 179 LSLGLRSLASVEDTGPTRT-VLARDLAGRQLFIARRSA 215


>gi|32473552|ref|NP_866546.1| pilus assembly protein CpaB [Rhodopirellula baltica SH 1]
 gi|32398232|emb|CAD78327.1| probable pilus assembly protein CpaB [Rhodopirellula baltica SH 1]
          Length = 403

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 103/247 (41%), Gaps = 20/247 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   +  ++++ V   +A I   + +         V        + + ++   + +   
Sbjct: 30  MRNKSVF-LILACVCGTIAAIGVSQWMQAQSTGQSSVA------TVEIFVTAKTIDIAEE 82

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + +    +P + V  G          +++++G   R    +G+P+   KL+   NG 
Sbjct: 83  ITADKIRLEQWPADRVPTGA------SGKLEDVEGKFARQRFYEGEPVMPVKLMADANGS 136

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178
            S  +P G    +M     S+V  +++P D VDV+     SE   + T   VL+ +RV A
Sbjct: 137 -SQTIPVGFSVVSMRADPESSVATLVRPGDRVDVMAYFVKSELIPETTAKTVLTGVRVFA 195

Query: 179 ID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +D      +DS+       + +L +      A   A  + K+ L L + +D+N +   ++
Sbjct: 196 VDGRTEREVDSEAEAKPARSISLLIHKKDTPAWTYASELGKIRLTLGNPSDINETKDGET 255

Query: 235 DVWDVQE 241
           D    QE
Sbjct: 256 DGGAGQE 262


>gi|260778163|ref|ZP_05887056.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606176|gb|EEX32461.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 279

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 115/269 (42%), Gaps = 29/269 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM + +     L++ +    L+        +   +    F  VL+S  D+ VG V
Sbjct: 1   MTAKRLMMLSI-----LLSSVGIGLLLLGQDNSEHQTKEQPEQVFQRVLVSGQDIGVGDV 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            TPN+  W +  EE + D ++D V +       L   +  + I +G  I    L+   G 
Sbjct: 56  YTPNMFRWQSLSEEQLSD-YVDYVTEDEITSINLASGIAHIAIKQGQVIAAADLIPPQGG 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTV 169
             L+  +  G RA ++ +   +A  G ++P D VD++++ S                V+ 
Sbjct: 115 ASLALKVRAGYRAVSVPVDQVTANSGFVQPGDKVDILLLGSKVSELKKYDNVVEGLYVST 174

Query: 170 VLSNIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           + +N+R++A ++   S+           ++   S+ +LE+TP QA  +V A  + +L+L 
Sbjct: 175 IATNVRILAFNNLSSSEGFQEKRHDYGAKIPDNSSVSLEVTPEQATQIVLANQLGRLTLS 234

Query: 220 LRSIA--DLNPSSSEDSDVWDVQEEGKEI 246
           LR     D +   S       +  E K I
Sbjct: 235 LRGSGETDFSLPQSHTITTTQLNPESKLI 263


>gi|283769331|ref|ZP_06342230.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219]
 gi|283103988|gb|EFC05372.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219]
          Length = 228

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 27/235 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK    +  + +   AL    +A+ L+S              A+   V ++  ++     
Sbjct: 1   MKK---IKFIAAISGALTMVFLALFLISSS--------AGRGAQSTAVYVASKNIKANQQ 49

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--- 117
           +T ++LE+   P   V +G            EL G + +V ILK   I  E +   G   
Sbjct: 50  ITEDMLEYKKVPGNLVVEGA------AKNKDELLGKMAKVDILKNSVISKENVYKEGEPE 103

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
            NGGL+ ++ KGKRA +  +  S+ +  +++  D VD+++ R   +       +LSN+++
Sbjct: 104 KNGGLTYVIAKGKRAISFPVEYSTGISSLLRGGDRVDIILTR-AKDSNFVSKTILSNVKI 162

Query: 177 IAIDHNID-----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           +A+ ++       S       ST T+EL+P     L+       LSL LR+  D 
Sbjct: 163 LALGNDYSVGVNKSGSEGKSYSTVTVELSPEDCVKLMNGSKAGTLSLSLRTPGDN 217


>gi|162147490|ref|YP_001601951.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545597|ref|YP_002277826.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786067|emb|CAP55649.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533274|gb|ACI53211.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 292

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 32/271 (11%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
           R++ IVV+    +   I+    +          +TE     + VL+++     G ++   
Sbjct: 4   RILLIVVAVSGLIGVVILGRLALHSGEKPVVAQVTEKKVPTVGVLVARKAEPAGALLQSG 63

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSS 123
            L+   FP   V  G I DV  P+    L G L+RVP+ +G  +  E ++  G+ G L++
Sbjct: 64  DLQTKDFPANLVPPGAIHDV--PSERAALTGGLLRVPVPEGGLLTNEAVLRVGDHGFLAA 121

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------------ 165
           +L  G  A ++ +   S V  +I+P D+VD+++   ++                      
Sbjct: 122 VLKPGDSAVSVGVDSVSGVADLIEPGDYVDLIVTHDVATADVANSGGGAGGNPGGDAGGG 181

Query: 166 --TVTVVLSNIRVIAID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                 VLS +RV+AID    H    D R +   T TLE+TP QA+A+  A  + +L+L 
Sbjct: 182 RIAAETVLSALRVVAIDREMQHTSTVDSRGVGNRTVTLEVTPAQAEAVAVAGRLGRLTLA 241

Query: 220 LRS-----IADLNPSSSEDSDVWDVQEEGKE 245
           +RS     +A   P ++   DV      G E
Sbjct: 242 VRSLDQAGVAAFAPHTTWGGDVSPALAHGPE 272


>gi|312883753|ref|ZP_07743472.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368502|gb|EFP96035.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 279

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 23/228 (10%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
             IA+ L++P   Q E+        F  VL++K  + VG   T N+ +W    E+ +   
Sbjct: 16  VGIAILLLNPSKPQFEQSQAAAEI-FKRVLVAKQRVVVGQPYTLNMFQWEKVSEQEL-SN 73

Query: 80  FIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDIS 137
           ++D + + +  + +L   +    I  G  +  +      G   ++  +  G RA ++ + 
Sbjct: 74  YLDFISEEDFSRLDLKSGIAHTAIQSGQVMSKDDFETPNGGISMAFKVQNGHRAISVPVD 133

Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDHNID---- 184
             +A  G ++P D VD++++ S  E             VT +  N+RV+A +   D    
Sbjct: 134 AVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTTIAVNVRVLAFNQYADPQDF 193

Query: 185 SDERVLVG------STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
              R   G      S+ +LE+TP QA  +V A  + KL+L LR   + 
Sbjct: 194 QKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLSLRGAGEA 241


>gi|330811038|ref|YP_004355500.1| hypothetical protein PSEBR_a4092 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379146|gb|AEA70496.1| Hypothetical protein; putative exported protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 271

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 16/227 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    L  I +S V  L A  +A   +S        +         +V+++  ++  G +
Sbjct: 1   MSSRTLPLIGISLVMGLGAAWMADSWLS------ARLNATPDDHLRSVVVATVEIPFGQM 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           V    +  V  P + + D         ++ ++  G +    IL+GD +R  +L +  G  
Sbjct: 55  VEAQQVTTVRMPMDTIPDDAF------DSSEQAVGKIATFDILRGDIVRGARLSEHLGGS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS--LSERKPTVTVVLSNIRVI 177
            L+SL+   KRA ++ +     VGG + P + VDV+  ++        T   +L N+RV+
Sbjct: 109 TLASLIAPDKRAISVRVDDVVGVGGFLLPGNRVDVLATKTTNAGSNSATSRTLLENLRVL 168

Query: 178 AIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           A+D    +D+ + +V    TLE++  +A+ LV AQ+  KL L LR+ 
Sbjct: 169 AVDQTAGTDKTQPVVVRAVTLEMSATEAELLVTAQTEGKLQLALRNP 215


>gi|78062907|ref|YP_372815.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
 gi|77970792|gb|ABB12171.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
          Length = 342

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 106/274 (38%), Gaps = 28/274 (10%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K  RL  +VV+             ++   +V               V ++  DL  G+++
Sbjct: 3   KPLRLAVLVVAAGIG-------AFILRELYVAASTPSVATETDQARVRVAAADLPEGLLL 55

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
             N L W   P   V  G   +        +L G L+R  +  G PIR+E ++  G    
Sbjct: 56  RDNDLAWKRMPRAQVPAGAFVESQPG---ADLKGALLRNHVGAGAPIRVENVIPAGAPDF 112

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIR 175
           L++ L  G RA ++ +   S   G+I+P D VDV++ + +     +        V+   R
Sbjct: 113 LAAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVLLTQQIGGSATSPGTFEAETVVRRAR 172

Query: 176 VIAIDHNIDSDERV-------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           V+A+       +             T TLE+ P  A+ ++ A  +  LSL LRS A  + 
Sbjct: 173 VLAVGSEFQRAKAPASAPDATARARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDR 232

Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGI 262
                 D     E+  + Q + AG +     E  
Sbjct: 233 RQPAGGD-----EQEPDTQPVWAGDVSRAAREAA 261


>gi|242315438|ref|ZP_04814454.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|242138677|gb|EES25079.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
          Length = 366

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  +A            +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102
           +    L W          G + +                          +L G L+R P+
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160
             G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L 
Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174

Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207
                    +R      + + +RV+A+         D+ +      T T E++   A+ +
Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234

Query: 208 VAAQSVAKLSLVLRSIA 224
                +  LSL LRS A
Sbjct: 235 TVGAHLGALSLALRSFA 251


>gi|225174960|ref|ZP_03728957.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
 gi|225169600|gb|EEG78397.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
          Length = 238

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 97/237 (40%), Gaps = 17/237 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R + +  + +  LV  +     +   +      I  +     NV+++   +     
Sbjct: 1   MKANRKLLLA-AVIVGLVTVVALNSYIRSLNTPALASIPHS-----NVVVASSTIPAHTR 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +T  +L+ V+ P + V    +       ++ +  G + R  I++G+ +   ++V      
Sbjct: 55  ITAEMLDVVSIPNDAVHPEALR------SVDDAAGGISRTEIVRGEQVIDARVVTEDRRA 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVI 177
            LS  +P+G RA ++ +   + V G I   D++DV++    +E         V  N+ V+
Sbjct: 109 TLSYRVPEGMRAISIPVGEVTGVAGYISAGDNIDVLITYDDTEIHEGAITYTVFQNVNVL 168

Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           A   N     DE   V  T TL +T  QA+ L  A       L LRS  D +    E
Sbjct: 169 ATGPNTREKDDEEQEVVGTVTLSVTAAQAEVLAYALLKGNYHLTLRSPLDEDEVELE 225


>gi|284048527|ref|YP_003398866.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM
           20731]
 gi|283952748|gb|ADB47551.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM
           20731]
          Length = 339

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 102/272 (37%), Gaps = 38/272 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +LM +  S   A+   ++ + L +    Q    +    A  + V+ +  D+A   V
Sbjct: 27  MSPRKLMLLCGSAALAVFL-LLYVILSALFPDQKPGNVA---AGNVTVVEAARDIAPQTV 82

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T  +L+ V  P   V  G + D  Q        G    + +  GD +   KL   G GG
Sbjct: 83  LTEEMLKTVEVPANLVPAGALTDKKQA------LGKKTGIDLFAGDILTERKLTSHG-GG 135

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
              ++P G RA +  ++  + V G  KP D VD+++V            +L ++ ++A++
Sbjct: 136 FVGMIPDGMRAVSFGVNDVTGVSGFAKPGDKVDILLVTDKEGNGIVSKTLLKDVLILAVN 195

Query: 181 ----------HNIDSDERVLVG-----------------STATLELTPMQAKALVAAQSV 213
                         SD++ L                   S  T+ LTP  A  L+ +  +
Sbjct: 196 KSSDRPQGTTQTSGSDKKTLTSGSQPAGNSGSTGSMGTPSVVTVALTPYDAAKLIGSSRI 255

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
            +L ++LR         S    V  +      
Sbjct: 256 GQLQMMLRPADGSTDDKSIGYYVIPLPGNTAS 287


>gi|87312293|ref|ZP_01094391.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM
           3645]
 gi|87284997|gb|EAQ76933.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM
           3645]
          Length = 363

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +A   +S       +  T    +  N+ ++  D+ +   ++P +++   +P++ V +G +
Sbjct: 1   MASIGISQVLESKSQQSTAPQMEMENIFVAIEDIDINEQLSPELIKLEPWPKDKVPEGAV 60

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISS 140
            +      ++E++    RV +  G+PI   KL     + G S ++PKG R  ++ ++  +
Sbjct: 61  TN------LEEIENRRPRVRLYAGEPILERKLFGSNEDKGASKMIPKGFRVHSVRVTAET 114

Query: 141 AVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIAID----HNIDSDERVLVGST 194
           +  G+I P D VDV++    S    K     +L N+RV A++       DS+   +   T
Sbjct: 115 SASGLILPGDRVDVLVYLRNSGSINKTLTRTILKNVRVFAVNEQTHRETDSEGNTITAKT 174

Query: 195 ATLELTPMQAKALV 208
            +L + P Q + L+
Sbjct: 175 VSLLVKPSQVEVLM 188


>gi|121534342|ref|ZP_01666166.1| SAF domain [Thermosinus carboxydivorans Nor1]
 gi|121307112|gb|EAX48030.1| SAF domain [Thermosinus carboxydivorans Nor1]
          Length = 286

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 23/232 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKL+    + ++ V +L    +  + +       +E   + P + + V+++K D+     
Sbjct: 1   MKLSTKGVLAIALVLSLATTGLIYKYL-------QEATQKTPQEGVVVVVAKVDIPPKTK 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119
           +T  ++     P E V  G + +      ++   G + R  I+ G+ I   +LV +G + 
Sbjct: 54  ITAEMVATAKVPAEYVQPGAVRE------LKTAVGAIAREHIVAGEQIAERRLVIQGKSA 107

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIA 178
           G + ++P  KRA T+ ++  + V G +KP D+VDVV     +        ++L N+ V+A
Sbjct: 108 GFTGIIPPDKRAVTIAVTEVTGVAGFVKPGDYVDVVATFDQNTVGDNVSQIILQNVLVLA 167

Query: 179 IDH--------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +              +  +  +T TL +TP +   L  A+   K+ L LR 
Sbjct: 168 ANRDAEAGAADGAKDKKEAIKTATVTLAVTPDEVAQLALAEDKGKVRLALRP 219


>gi|217978827|ref|YP_002362974.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2]
 gi|217504203|gb|ACK51612.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2]
          Length = 338

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 105/253 (41%), Gaps = 22/253 (8%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF---INVLISKGDLAVGMVV 61
           R + IV+  VF +    + +  V     +  EV +   A       +L +   +  G ++
Sbjct: 4   RKLLIVLGAVFVIAGVGLCIAWVGQLRNREIEVASPAAAPAASEQAILSATRAIPAGELL 63

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
             + + W       V  G +       A  E  G + R     G+ +    LV   +   
Sbjct: 64  RSDDIGWKNVGAAGVQAGNLLRGQ--VAETEFFGAITRRDFAAGEGLIASDLVKPNDRRF 121

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIR 175
           L+++L  G+RA ++ +  + +  G++ P D+VDV++ +   +     R+     VL N+R
Sbjct: 122 LAAVLKPGRRALSVSVDAAQSAAGLVLPGDYVDVILTQDFGDKIDIGRRTVSETVLWNVR 181

Query: 176 VIAIDHNIDSDERVL-----------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           VIA+D ++D+    +           +  T TLE+   QA+ L+ A  + K  L +R + 
Sbjct: 182 VIAVDQSLDAQTSTVAEHTALGAESHIPKTVTLEMFERQAETLLVAAQLGKFQLAVRPLV 241

Query: 225 DLNPSSSEDSDVW 237
                  ED  + 
Sbjct: 242 GSGDVKIEDQHIA 254


>gi|300856049|ref|YP_003781033.1| putative cell wall-binding protein [Clostridium ljungdahlii DSM
           13528]
 gi|300436164|gb|ADK15931.1| putative cell wall binding protein [Clostridium ljungdahlii DSM
           13528]
          Length = 321

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 24/223 (10%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
             AK   +L++   ++ G ++   +++ +  P   +FD +I D        ++ G     
Sbjct: 35  EAAKKTTILVAAETISPGTLIDKKMIKKIQVPYNPIFDNYIKDSS------KIAGKYTTE 88

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I K +   ++KL+++G   L+  +    RA ++ ++  S V G++KP D+VD+++  S 
Sbjct: 89  TISKNEGFHIDKLLEKGGDELNLKIDNDYRAISISVTGDSGVSGLLKPKDYVDIIVYTSE 148

Query: 161 SERK------PTVTVVLSNIRVIAIDHNIDSDERVLVGST------------ATLELTPM 202
                         +VL NI+V+A+D  I  D +    +              TL +   
Sbjct: 149 KRDGIKVVRPDEAKIVLQNIQVLAVDKQISRDNKESNSNKSSDNGKAPTNFLVTLSVKVS 208

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
             + +V AQS+  + L LR + D   + +  +   D+     E
Sbjct: 209 DLEKVVLAQSIGSIKLALRPLKDEITTQTNGTTWEDMSVNTDE 251


>gi|261856885|ref|YP_003264168.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2]
 gi|261837354|gb|ACX97121.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2]
          Length = 258

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
            + + V+ +   +A ++A++ ++          T  P K   V++   +L VG V++   
Sbjct: 8   FLYVAVAVLLGGLASVLAVKYINQQV--ATRTHTAAPQKMRTVVVPVHNLKVGDVLSAKD 65

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
           L     P   V    +     P+  +   G ++  P+ +G PI    +    N   S ++
Sbjct: 66  LATRDIPVAYVPADALT----PDDYESHLGQMLTTPLAQGAPISAMAMEPIANHF-SDII 120

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI-- 183
              + A T+D+S ++++ G+I P DH+D++++ S + +      +LS++ V+A   +   
Sbjct: 121 KPDRVAYTIDVSETNSISGLIVPGDHIDILLLLSKNSKDDI-RPLLSDVLVLATGKHAKG 179

Query: 184 ---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
              D  E     S  TLELTP  A+ +  A+ + +L ++LRS     P +       D+ 
Sbjct: 180 VRSDGTEGNQGYSNLTLELTPKNAQRIGIAKKMGQLLVMLRSPDTKFPPNLGLLTASDLL 239

Query: 241 EEGKE 245
             G  
Sbjct: 240 GAGPR 244


>gi|255597441|ref|XP_002536774.1| conserved hypothetical protein [Ricinus communis]
 gi|223518588|gb|EEF25608.1| conserved hypothetical protein [Ricinus communis]
          Length = 302

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 20/257 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++ ++ I++  V A++  +I   +V+       + ++      + + +S  DL  G+++ 
Sbjct: 1   MSNIIKILLLLVGAVLIALIVRTVVASISHPAAQAVS-----TVKIRVSAADLPQGLLLR 55

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGL 121
            + L W   P  NV    I  V       EL G L+R     G  +  + ++     G L
Sbjct: 56  DDDLAWKDVPAGNVPAAAI--VANAPNAIELKGALLRHAAAAGTVLGPDDVILPSAPGFL 113

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIR 175
           ++ L    RA ++ I   S   G+I+P D+VD+++ + +  R        +   V+  +R
Sbjct: 114 AATLKPDMRAVSVAIDDVSGNAGLIQPGDYVDLLLTQQMDHRTDSPDLAVSSETVVERVR 173

Query: 176 VIAID------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           V+A+          D+ +      T TLE+TP  A+ +  A  +  LS  LRS A  +  
Sbjct: 174 VLAVGSELSRPKTSDAPDANNRARTVTLEVTPHMAEVVSVAARLGSLSFALRSFAKASRE 233

Query: 230 SSEDSDVWDVQEEGKEI 246
           +   S V          
Sbjct: 234 ADAASAVPASGPLQARP 250


>gi|167581962|ref|ZP_02374836.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           TXDOH]
          Length = 269

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 105/271 (38%), Gaps = 39/271 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  IA            +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYIA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA--------------MQELDGVLVRVPILKGD 106
           +    L W      +V  G + +                      +L G L+R P+ +G 
Sbjct: 55  LRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGM 114

Query: 107 PIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----- 160
           P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L     
Sbjct: 115 PLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGG 174

Query: 161 ----SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQ 211
                ER      + + +RV+A+         D+ +      T T E++   A+ +    
Sbjct: 175 APADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGA 234

Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            +  LSL LRS A  +  ++  +        
Sbjct: 235 HLGALSLALRSFATSDRGAAGLASAEPPAPP 265


>gi|149178506|ref|ZP_01857094.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797]
 gi|148842621|gb|EDL56996.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797]
          Length = 324

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 14/238 (5%)

Query: 10  VVSGVFALVAGIIAMRLVSP--HHVQTEEVITENPAKFINVLI---SKGDLAVGMVVTPN 64
           + + +FA++ G+ A   V    H      V+ E+P      ++   +  DL  G  ++ +
Sbjct: 1   MTAAIFAILLGLGAAYTVRQFLHEKPKPFVLAEDPPAGPKKIVLPIASRDLVPGQKLSLD 60

Query: 65  ILEWVAFPEENVFDGFIDDVHQPN---AMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
            +  +    E +   +  D          Q + G  ++  I  G P     L   G G G
Sbjct: 61  DISLLQISPELLSKRYDADSEGKQRIMMTQYIAGRTLKTAIKAGQPFHTIDLFANGMGPG 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAI 179
           +S +L  G RA T+ I     V G  +P   VDV+     ++  P  T  +L  +RV+A+
Sbjct: 121 ISEILEPGNRAVTVAIHKIGNVAGFSRPGTIVDVLFRSKETDGIPETTITLLEKVRVLAV 180

Query: 180 DHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
                   +V  G       TLE++P Q K L   +    LSL LR   +     S  
Sbjct: 181 GDQAVPGHKVGEGGGMDHPVTLEVSPEQGKVLKVVEDHGILSLALRHPDENTEVVSAG 238


>gi|319788662|ref|YP_004148137.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1]
 gi|317467174|gb|ADV28906.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1]
          Length = 274

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 22/239 (9%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
               + I ++   AL+A  +A+  V      T    T++    + V +   D+  G ++ 
Sbjct: 7   SKNFLYIAIAVGMALLAAFVAVNYVQT----TVAERTQDNRPMVEVAVPMDDMPQGAILQ 62

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
           P  L     P E      +     P    + +G ++R P+  G P+    LV   +   S
Sbjct: 63  PGDLALRRIPAEYAPADAVT----PENHGQFEGRMLRSPVRGGAPLSASALVPLYDQF-S 117

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSNIRVI 177
            L+P+GK A T+ +  ++++ GMI P D +D++ ++   E     T      +L  +RV+
Sbjct: 118 RLIPRGKVAYTLSVDENNSISGMIAPGDLIDILFLKDKDESSGARTGALALPLLQQVRVL 177

Query: 178 AIDHNIDS----DERVL----VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           A    I      D R        S+ TLEL   QAK L  A     L ++LR + D +P
Sbjct: 178 ATGTRIGERVAPDGRPADDGQGFSSVTLELDHGQAKTLAVASEAGSLRVLLRELEDDSP 236


>gi|167919050|ref|ZP_02506141.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei BCC215]
          Length = 275

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  +A            +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102
           +    L W          G + +                          +L G L+R P+
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160
             G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L 
Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174

Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207
                    +R      + + +RV+A+         D+ +      T T E++   A+ +
Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234

Query: 208 VAAQSVAKLSLVLRSIA 224
                +  LSL LRS A
Sbjct: 235 TVGAHLGALSLALRSFA 251


>gi|254441777|ref|ZP_05055270.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307]
 gi|198251855|gb|EDY76170.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307]
          Length = 286

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 112/277 (40%), Gaps = 15/277 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           M+    + + V    A  A  +    +   +   + +    E     ++V      +  G
Sbjct: 1   MRAVFGLVLFVGMGLAGFAIYMVQGYLQEQNANLERQRAAMELAVPTVHVYAVNRVMEHG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +T   +  + + E  + +G      +  +    +  +V   +   +PI   K+   G 
Sbjct: 61  EQITMQDIIMIRYAEPYLPEGVFRTAEELFSAGPDELRVVIRQMEPNEPILATKVTAPGE 120

Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171
            GG+++LL +G RA T+++ +SS V G + P D VDV     ++             ++ 
Sbjct: 121 VGGITALLARGMRAFTIEVDVSSGVSGFLNPGDRVDVYWTGRVNGIDGANTNGEFTKLIQ 180

Query: 172 SNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           + I ++AID   +S      +  T T+++TP Q  AL  AQ+   LSL L    D   +S
Sbjct: 181 AGIELVAIDQTSESGRIGASIARTVTVQVTPDQVAALAQAQATGNLSLSLVGREDDTVAS 240

Query: 231 SEDSDVWDV-----QEEGKEIQIIKAGVIVNKDGEGI 262
           S + +   +     Q    EIQ  +   I  + G  +
Sbjct: 241 SVEVNQASLLGIEAQAPTPEIQTAEICSIRTRRGAEV 277


>gi|167902789|ref|ZP_02489994.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei NCTC
           13177]
          Length = 279

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  +A            +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102
           +    L W          G + +                          +L G L+R P+
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160
             G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L 
Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174

Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207
                    +R      + + +RV+A+         D+ +      T T E++   A+ +
Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234

Query: 208 VAAQSVAKLSLVLRSIA 224
                +  LSL LRS A
Sbjct: 235 TVGAHLGALSLALRSFA 251


>gi|295690799|ref|YP_003594492.1| Flp pilus assembly protein Cpab [Caulobacter segnis ATCC 21756]
 gi|295432702|gb|ADG11874.1| Flp pilus assembly protein CpaB [Caulobacter segnis ATCC 21756]
          Length = 293

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 132/288 (45%), Gaps = 40/288 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGII---AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           M   RL+ ++++ V A+   ++   A+ + +   V               VL++K DLA+
Sbjct: 1   MSPVRLLIVLIAAVSAIGMAVVLQRALGVKADKPVAAAAPAAAPAKPMTQVLVAKRDLAI 60

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAMQEL 93
           G  +T   ++W A+P ++V   FI +   P                        +  + L
Sbjct: 61  GARLTQADIDWQAWPSDSVNAAFITNGAAPAEGETTSGAVALAKAAVTGQMIGGDPAKAL 120

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           DG +VR PIL G+PI   K+V  G GG LS +L  GKRA  + +S  +  GG I P D V
Sbjct: 121 DGAIVRDPILAGEPITARKIVRGGEGGYLSVVLTPGKRAVAVPVSADTTAGGFILPGDRV 180

Query: 153 DVVMVRSLS------ERKPTVTVVLSNIRVIAIDHN--IDSDERVLVGSTATLELTPMQA 204
           DV+  R          R      VL N+RV+A+D     D D +  + ++ATLE+   +A
Sbjct: 181 DVLSTRDAPLPGGVGGRVIIGETVLRNVRVLALDQKTVADKDAKSQIATSATLEVGAAEA 240

Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252
           +AL AA++   ++L LR+  D    S   +   D       ++I + G
Sbjct: 241 EALAAAKAGGPVTLALRAYTDAGAPSGGFAGPSD----PAAVRINRGG 284


>gi|260892925|ref|YP_003239022.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4]
 gi|260865066|gb|ACX52172.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4]
          Length = 233

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 20/234 (8%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A+ A +     +               A +++V+++  D+ V   +TP++L+    P   
Sbjct: 14  AVGAAVGTYFYLERLKATY-----RQKAHYVSVVVAAQDIPVRTSLTPSLLKLQDLPSSC 68

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG--GLSSLLPKGKRAAT 133
           V    +  +      ++  G +  VP+++G+ +   KL    +    L+  L  G+RA T
Sbjct: 69  VHPLAVRRI------EDAVGRVTTVPLVRGEVLLQSKLASSKDEKQELALSLQPGERAVT 122

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHNIDSDERVL 190
           + ++  S VGG++KP D VDVV    L  +    T   +V SN+RV+A+  +        
Sbjct: 123 LAVNAVSGVGGVLKPGDRVDVVATFDLESQGTKTTYTALVASNVRVLALGSS----GEKK 178

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
              T TL +TP Q   +  A     + L LR   +   +      + D+ E GK
Sbjct: 179 PYDTVTLAVTPRQGALITLATERGSVRLFLRGPKEQEATQLLPVKLPDLLEAGK 232


>gi|254197384|ref|ZP_04903806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|169654125|gb|EDS86818.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
          Length = 350

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  +A            +     P + + V ++  DL  G++
Sbjct: 5   LKLASLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102
           +    L W          G + +                          +L G L+R P+
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160
             G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L 
Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174

Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207
                    +R      + + +RV+A+         D+ +      T T E++   A+ +
Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234

Query: 208 VAAQSVAKLSLVLRSIA 224
                +  LSL LRS A
Sbjct: 235 TVGAHLGALSLALRSFA 251


>gi|126452162|ref|YP_001066149.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|126225804|gb|ABN89344.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
          Length = 350

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  +A            +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102
           +    L W          G + +                          +L G L+R P+
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160
             G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L 
Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174

Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207
                    +R      + + +RV+A+         D+ +      T T E++   A+ +
Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234

Query: 208 VAAQSVAKLSLVLRSIA 224
                +  LSL LRS A
Sbjct: 235 TVGAHLGALSLALRSFA 251


>gi|83721444|ref|YP_442981.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
 gi|257139205|ref|ZP_05587467.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
 gi|83655269|gb|ABC39332.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           E264]
          Length = 345

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 107/277 (38%), Gaps = 44/277 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  +A            +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA--------------MQELDGVLVRVPILKGD 106
           +    L W      +V  G + +                      +L G L+R P+ +G 
Sbjct: 55  LRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGM 114

Query: 107 PIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----- 160
           P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L     
Sbjct: 115 PLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGG 174

Query: 161 ----SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQ 211
                ER      + + +RV+A+         D+ +      T T E++   A+ +    
Sbjct: 175 APADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGA 234

Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248
            +  LSL LRS A     +S+   V     E     +
Sbjct: 235 HLGALSLALRSFA-----TSDRGAVGLASAEPPAPPV 266


>gi|188586926|ref|YP_001918471.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351613|gb|ACB85883.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 233

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 18/237 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVGM 59
           KL +  G++VS + A+V  +I  + +S      E            + V+++  +L  G 
Sbjct: 3   KLKKYRGLLVSLILAIVTVLIIHQYISSLETAYEGTGPREIDGEDQVAVVVATSNLDTGT 62

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           ++T + L+    PE+      + D       +E+ G +++  +++ + +   +++     
Sbjct: 63  ILTQDHLDTRKVPEQTAHPQAVTD------KEEITGEVLKQDVVEHEVLMSSRVLGEEEA 116

Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVL 171
             LS ++P+ KRA ++ +   S V G I+  D+VDVV  +   +R+        +  ++L
Sbjct: 117 NKLSEVIPENKRAMSVAVDQVSGVAGFIQAGDYVDVVATKDEEDREGQEPSQDSSSEIIL 176

Query: 172 SNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            N++V+A+   I     E V   ST TL +   +A  L  A+    + L+L+ I + 
Sbjct: 177 DNLQVLAVGDRILYSRQELVQEVSTVTLAVNRNEATELTHAEEEHVIRLLLQPITEN 233


>gi|152994346|ref|YP_001339181.1| SAF domain-containing protein [Marinomonas sp. MWYL1]
 gi|150835270|gb|ABR69246.1| SAF domain protein [Marinomonas sp. MWYL1]
          Length = 309

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 109/271 (40%), Gaps = 31/271 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVG 58
           MK++ +  I  + VFA+   ++   L S        V      K  F  VL +  DL  G
Sbjct: 1   MKVSSVFFISGALVFAIGGALLVRVLASTPPPPAPVVKAAPAPKPVFTPVLAASKDLVPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  + ++W+A  ++     +   +   + +  + G  VR P+ KGD +    +V  G+
Sbjct: 61  DFIDNSAVQWLAVDKQYESHSYF--LKGVDQVDAVFGATVREPVAKGDVLGSRVVVLPGD 118

Query: 119 GGL-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------ 165
            G  +S+L  G RA  +     ++  G++   D VDVV+     +               
Sbjct: 119 AGFIASVLESGMRAVAIPADAVTSNAGLVSAGDRVDVVLGLKRDQENGGEADPMASIELP 178

Query: 166 --TVTVVLSNIRVIAIDHNIDSDERVLV------------GSTATLELTPMQAKALVAAQ 211
                 +L N+RV+A++  ++   +                 T TLE+ P   + L  A+
Sbjct: 179 KLASQTLLRNVRVLALNDAVEEMAKEKPTEEKSGAKKRKFYETVTLEVFPKDVERLTVAR 238

Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            +  L L LRS+ +     S D +    ++E
Sbjct: 239 EIGVLQLALRSVRNEMLVGSSDENRIAARDE 269


>gi|76810999|ref|YP_333434.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei
           1710b]
 gi|126438737|ref|YP_001058907.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|134282270|ref|ZP_01768975.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|226196386|ref|ZP_03791968.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|254179873|ref|ZP_04886472.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|254188721|ref|ZP_04895232.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254258897|ref|ZP_04949951.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
 gi|76580452|gb|ABA49927.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           1710b]
 gi|126218230|gb|ABN81736.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|134246308|gb|EBA46397.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|157936400|gb|EDO92070.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184210413|gb|EDU07456.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|225931603|gb|EEH27608.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|254217586|gb|EET06970.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
          Length = 350

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  +A            +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102
           +    L W          G + +                          +L G L+R P+
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
             G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L+
Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174

Query: 162 ERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207
               T            + + +RV+A+         D+ +      T T E++   A+ +
Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234

Query: 208 VAAQSVAKLSLVLRSIA 224
                +  LSL LRS A
Sbjct: 235 TVGAHLGALSLALRSFA 251


>gi|303241713|ref|ZP_07328210.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
 gi|302590714|gb|EFL60465.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
          Length = 250

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 114/261 (43%), Gaps = 24/261 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+      IV+S + AL    +    +       +  +  +  ++I+V ++   +A    
Sbjct: 1   MESVNKRVIVISIILALFTTALVFLYI------KDATVKPDVVEYIDVYVAAKTMAAKYE 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   ++     +E +    +          ++ G  ++  +++G+ I   +LV   N  
Sbjct: 55  ITEADIKKTRVTKEYLNTDAVL------VQADIIGKRLKESVIEGEQILRSRLVQEDNFT 108

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVL 171
           L+  +P+G RA +++++  + V  +I+P D VD++    L ++               V+
Sbjct: 109 LAYNVPEGMRAISVNVNEQTEVANLIRPGDFVDIIASFPLEKQDIGQNTIINLGISQTVI 168

Query: 172 SNIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            N++V+A+  +  I+ D+++ +  T TL ++P  A+ L        + + LRSI D    
Sbjct: 169 QNVQVLALGQDLAIEEDKKLELPKTVTLAVSPKDAEKLTFVTEFGTMRMTLRSIGDDKII 228

Query: 230 SSEDSDVWDVQEEGKEIQIIK 250
            S D  + D     K + I+ 
Sbjct: 229 -SGDGTIKDDVMGDKGVIIVP 248


>gi|121599044|ref|YP_993007.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1]
 gi|124386572|ref|YP_001026339.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229]
 gi|126449623|ref|YP_001080387.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247]
 gi|254177864|ref|ZP_04884519.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC
           10399]
 gi|254358541|ref|ZP_04974814.1| Flp pilus assembly protein CpaB family [Burkholderia mallei
           2002721280]
 gi|121227854|gb|ABM50372.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1]
 gi|124294592|gb|ABN03861.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229]
 gi|126242493|gb|ABO05586.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247]
 gi|148027668|gb|EDK85689.1| Flp pilus assembly protein CpaB family [Burkholderia mallei
           2002721280]
 gi|160698903|gb|EDP88873.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC
           10399]
          Length = 350

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  +A            +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102
           +    L W          G + +                          +L G L+R P+
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
             G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L+
Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174

Query: 162 ERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207
               T            + + +RV+A+         D+ +      T T E++   A+ +
Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234

Query: 208 VAAQSVAKLSLVLRSIA 224
                +  LSL LRS A
Sbjct: 235 TVGAHLGALSLALRSFA 251


>gi|217421311|ref|ZP_03452815.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|237812164|ref|YP_002896615.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|217395053|gb|EEC35071.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|237502713|gb|ACQ95031.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
          Length = 350

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F   A  +A            +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102
           +    L W          G + +                          +L G L+R P+
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
             G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L+
Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174

Query: 162 ERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207
               T            + + +RV+A+         D+ +      T T E++   A+ +
Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234

Query: 208 VAAQSVAKLSLVLRSIA 224
                +  LSL LRS A
Sbjct: 235 TVGAHLGALSLALRSFA 251


>gi|53719432|ref|YP_108418.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei K96243]
 gi|52209846|emb|CAH35818.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei K96243]
          Length = 350

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KL  LM + V G F          L    +V   +     P + + V ++  DL  G++
Sbjct: 5   LKLAGLMLVAVVGAF----------LFRVLYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102
           +    L W          G + +                          +L G L+R P+
Sbjct: 55  LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
             G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ + L+
Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174

Query: 162 ERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207
               T            + + +RV+A+         D+ +      T T E++   A+ +
Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234

Query: 208 VAAQSVAKLSLVLRSIA 224
                +  LSL LRS A
Sbjct: 235 TVGAHLGALSLALRSFA 251


>gi|319941903|ref|ZP_08016224.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804556|gb|EFW01426.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis
           3_1_45B]
          Length = 295

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 36/225 (16%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           +        V++EN A+ ++V  +  +L+ G  ++   +EW A  +    D F+ +  Q 
Sbjct: 27  AVQKEAAAPVVSENKAQ-VSVARAAANLSPGSFLSARDIEWTAVAQSAAKDTFVQNESQ- 84

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMI 146
               +L G LV  PI  G+ I    L+ R +   ++++L  G RA T+++ + +   G++
Sbjct: 85  ----DLSGALVLKPIKAGEVISPSALLARTDPEFVAAVLAPGMRAFTIEVDMVTGGAGLL 140

Query: 147 KPNDHVDVVMVRSLSERK----------PTVTVVLSNIRVIAIDHNIDSDE--------R 188
           +P + VDV++      +K               +L N+RVIA+DH I+            
Sbjct: 141 RPGNRVDVILAAQTDPQKSRAFASQKNFDVARTLLHNLRVIAVDHTIEPKGFGADPQSSD 200

Query: 189 VLVGS-----------TATLELTPMQAKALVAAQSVAKLSLVLRS 222
             +             T TLE+TP   + L  A+S  +LSL LR+
Sbjct: 201 PRMVRSSTPANINRKGTVTLEVTPKDVELLTVARSNGQLSLSLRN 245


>gi|220918103|ref|YP_002493407.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955957|gb|ACL66341.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 309

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 16/255 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R    V   V A++A +    L++ +       +         V++++ D+ V   +
Sbjct: 17  RKRRAAWGVTFLVVAILAAVGVALLLTRYMDARVAAVR---VPTSGVVVAQVDIPVATPI 73

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
            P  L  V +P   +  G   +         L G +  VPI +G+ +   KL   G   G
Sbjct: 74  KPEWLGVVPWPVTALPPGAASEPA------ALVGQVAIVPITRGEAVLPSKLATAGARSG 127

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179
           L++LLP G RA  + +     V G + P D VDV++     E  P T  +VL N++V+A+
Sbjct: 128 LATLLPAGMRAVAVRVDDVVGVAGFLHPGDRVDVIVTMQPREGVPYTSKIVLQNVKVLAV 187

Query: 180 DHNID----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
             +++      E+    + ATL +T  +++ L  + S  +L L LR++ D     ++   
Sbjct: 188 GQHLELRGKDAEKPNPVTVATLMVTGDESERLALSASKGQLLLSLRALGDEELVDTKGIT 247

Query: 236 VW-DVQEEGKEIQII 249
                    +E ++ 
Sbjct: 248 PPVLFASAAQEPRVA 262


>gi|317122047|ref|YP_004102050.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
 gi|315592027|gb|ADU51323.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
          Length = 236

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 19/248 (7%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M   R++  +++  +  L   ++    +     Q E          + V+++   +    
Sbjct: 1   MSRGRIVRYLLLPVLVGLAVTVLVAFYIRVPAGQAES------GPRVPVVVATRPVPAQT 54

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGN 118
            +  ++L     P + V  G I        +++  G + +VP+ +G+ +   KL    G 
Sbjct: 55  RLEADMLAVRQVPADLVGRGAIGR------LEDAVGKVTKVPLAEGEFVLASKLARGDGT 108

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIR 175
            GL+  LP+G RA T+      AVGG ++P D VDV +          +P V +++ N+ 
Sbjct: 109 DGLAYRLPEGTRALTVAADPVIAVGGFVQPGDRVDVFIGLPGGQPGVAQPEVRLLVENVL 168

Query: 176 VIAIDHNIDSDERVL-VGST-ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           V+A+     ++ +    G T  TL ++P  A A+V A+   +L L LR   D  P+    
Sbjct: 169 VLAVQQQTAAEGQPAGEGLTHLTLAVSPAHAAAIVLAEQEGRLRLALRPAGDDTPAGPIT 228

Query: 234 SDVWDVQE 241
           + + D+  
Sbjct: 229 ARLADLAR 236


>gi|115376401|ref|ZP_01463638.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1]
 gi|310822673|ref|YP_003955031.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1]
 gi|115366608|gb|EAU65606.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1]
 gi|309395745|gb|ADO73204.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1]
          Length = 270

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V+   ++ +E         + V+++  D+  G V++  ++   + PE+ V    +    +
Sbjct: 21  VAYSAIKKKEADVRRGWNLVPVVVAAQDIPEGSVISFEMISQRSVPEQFVTSSVV----K 76

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
           P++   +    V VP+  GDP+   +    +    LS+ + K  RA T++   +++VGG 
Sbjct: 77  PDSANYVVNQKVLVPLQAGDPLLWSQFETTKAAERLSTKVQKKGRAVTIEAKSTTSVGGW 136

Query: 146 IKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLE 198
           I+PNDHVDV+   R     +     +L N+ V+A      +       E     S  +L 
Sbjct: 137 IRPNDHVDVIGTFRDPQTDENVAVTLLQNVIVLATGKITGTTNVNLIPENQRDYSNISLL 196

Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           + P +A+ LV A  +  L+L LR+  D++               G+  ++++
Sbjct: 197 VIPEEAEILVLASELGNLTLSLRNEDDVDLIEERGRATISTLLSGERTRVLE 248


>gi|302343420|ref|YP_003807949.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075]
 gi|301640033|gb|ADK85355.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075]
          Length = 279

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 12/209 (5%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
             +   E   +   ++++  DL  G+ ++   L    +P E    G         A++ L
Sbjct: 33  KAQQEAERRVRTAPLVVAAVDLPAGLELSAGRLAVAQWPVEARPPGHF------GAVKPL 86

Query: 94  DGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
            G +++ P++KG+P+   KL       GL++ +  G RA T+       V G +K  D V
Sbjct: 87  LGRVLQQPVVKGEPLLAGKLSPEGAAAGLAAAIKPGWRAVTISADEVVGVAGYLKVGDRV 146

Query: 153 DVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDER---VLVGSTATLELTPMQAKAL 207
           DV+         ++    + L ++ V+A+ H  + D +    L G   TL   P  A+ L
Sbjct: 147 DVIATVKGLDQGKEAVARLALQDLEVLAVSHQAEQDGKKPPKLKGQVLTLLARPADAERL 206

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
             A    K+ L LR+  D  P+ +  + +
Sbjct: 207 ALAAGEGKILLALRNRQDRQPALTRGARL 235


>gi|237653357|ref|YP_002889671.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T]
 gi|237624604|gb|ACR01294.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T]
          Length = 286

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 20/263 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L+ + V+ +F L A  +A R +     +  E+      +  + +++K DLAVG  +T
Sbjct: 6   PRNLIILAVASLFGLGAAWLAARYL---EERATEIELRQQGQMGHAVVAKTDLAVGTPLT 62

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            +++     P E +    I     P   +   G ++  P   G+P+   +L +R    LS
Sbjct: 63  RDLVAVREVPVEWLHSSAIT----PEQFERAAGAVLAQPARGGEPLVWSQLEERRPATLS 118

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
           + L  G+RA T+ +  +S++ G+++P D +D++              +L  +RV+A    
Sbjct: 119 AQLAPGRRATTIPVDETSSLSGLLRPGDRIDLLATVQRDH-HHLTLPLLQGVRVLATGSR 177

Query: 183 IDSDERVLVGS-------TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
               E    G        T TL+L+  +A  LVAA+++A+L+ VLR   D   +  + +D
Sbjct: 178 TRPGEDDGAGDLLGGSFGTLTLDLSEEEATRLVAARALARLTAVLRHPRDTRTAPLQRTD 237

Query: 236 VWDV-----QEEGKEIQIIKAGV 253
              +           + +I  G+
Sbjct: 238 ALALLGLAPPAREAGVPVIYGGI 260


>gi|296121061|ref|YP_003628839.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
 gi|296013401|gb|ADG66640.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
          Length = 390

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 21/241 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+  ++ ++V+    L+A +   + +            E     I VL+++ ++  G  
Sbjct: 1   MKMKPMILMLVAVACGLIAMMGVQQTLGS-------RSGEGSGPKIKVLVARKEVQAGTP 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + +    +    D  I      ++ +E D    RV + +G  +  ++L ++G  G
Sbjct: 54  LDETCVGFKLVSKSEAPDDVI------SSKEEYDKRAPRVKLYEGQYVLKKQLGNKGEYG 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLSNIRV 176
            S  +P G R  T+ ++ +    G++ P D VDV +  S +  K         VL  I V
Sbjct: 108 ASMEIPPGMRVVTVPVTATMTHSGLLSPGDRVDVQVTYSYTRPKYGKTFKTRTVLQYIEV 167

Query: 177 IAIDH----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
            A D        + E        +L + P Q   L  AQ    L L+LR   D  P+   
Sbjct: 168 WATDSVRMGTEAAKEDSSQSKNVSLLVYPGQGALLQLAQEKGTLHLLLRGRNDKAPAEQT 227

Query: 233 D 233
            
Sbjct: 228 G 228


>gi|255658703|ref|ZP_05404112.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544]
 gi|260849090|gb|EEX69097.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544]
          Length = 358

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 106/276 (38%), Gaps = 49/276 (17%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K+T    +V +GV +++ G++    +S    +  E   +     + V+ +K D+    VV
Sbjct: 17  KITYRQWVVAAGVVSILLGLMVYLAMSGDDQKAAE---KPQTNLVQVVAAKQDIPERTVV 73

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGG 120
             ++L+ V  P E V +G   DV                 I +GD +   K+ VD    G
Sbjct: 74  KEDMLKVVEVPSELVPEGAFHDVADAIDHP------TSTAIQQGDIMTSRKVYVDIRMAG 127

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
            + ++P   RA T+ I+  + V G   P D+VD++++    E      ++L ++ ++ I+
Sbjct: 128 FTGIIPPDCRAVTIPINDVTGVSGFAHPGDYVDIMVITGTKENGINGRIILQDVLLLGIN 187

Query: 181 HNID----------------------SDERVLVGS-----------TATLELTPMQAKAL 207
              D                      S     VGS           TAT+ L P  A  L
Sbjct: 188 RTADLPNTPTGDSSKKDGSQSDKQDASSGTANVGSVNTKASSDTMATATVALKPADALKL 247

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
            A      L LVLR      P    D   +D    G
Sbjct: 248 AAESQEGTLYLVLR------PFKPRDMYTFDTDYAG 277


>gi|84516632|ref|ZP_01003991.1| CpaB family protein [Loktanella vestfoldensis SKA53]
 gi|84509668|gb|EAQ06126.1| CpaB family protein [Loktanella vestfoldensis SKA53]
          Length = 277

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 107/249 (42%), Gaps = 7/249 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A  +  + ++    Q      I       ++V ++   +  G
Sbjct: 1   MRAVFGLVLLVGMGLAGFAVYMVNQYMATQTAQLDRARQIAAQALVTVDVYVTTRSVTYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T + +  V +P + + +G                 +V +P++  + +   K+ + G 
Sbjct: 61  EYLTADDVRLVPYPRDYLPEGTFATEQSLFPQGTQTPRVVVLPMIANELVLTTKVSEPGA 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           + GL++L+  G RA  ++  +++   G+++P+D +DV     L + +    ++ S +++I
Sbjct: 121 SRGLTALVEPGFRAFPVEGRVAAGF-GILRPDDRIDVYWTGRLRDGREVTNLIKSGLQII 179

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           A+  +  +        +  +++TP +   L  AQ+  +L+L L    DL+ +     D  
Sbjct: 180 AVLGDAGNRGGP---QSVVVQVTPEEVALLTQAQNSGQLTLALVGTGDLSETGPVTIDNS 236

Query: 238 DVQEEGKEI 246
            +  E   +
Sbjct: 237 ALTGEQDIV 245


>gi|108759025|ref|YP_632818.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK
           1622]
 gi|108462905|gb|ABF88090.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK
           1622]
          Length = 271

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           ++   ++ +E         + V+++  D+  G V+T  ++   + PE+ V    +    +
Sbjct: 21  IAYSAIKKKEADVRRGWNLVPVVVAAQDVPEGTVITFEMISQRSVPEQFVTSSVV----R 76

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
           P++   +    V V +  GDP+   +    +    LSS + K  RA T++   +++VGG 
Sbjct: 77  PDSASYIVNQKVLVALQAGDPLLWSQFETTKAAERLSSKVQKKARALTIEAKHTTSVGGW 136

Query: 146 IKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLE 198
           I+PNDHVDV+   R     +     +L N+ V+A      +       E     +  +L 
Sbjct: 137 IRPNDHVDVIGTFRDPQTDENVAVTLLQNVIVVATGKITGTTNVNLIPENQREYNNISLM 196

Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           + P +A+ LV A  + +L+L LR+  D++               G+  ++++
Sbjct: 197 VLPEEAEILVLAVELGQLTLSLRNEDDVDLIEERGRATISTLLSGERTRVLE 248


>gi|170725114|ref|YP_001759140.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908]
 gi|169810461|gb|ACA85045.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908]
          Length = 298

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + ++++ V   +A             +    ++++  K   V+++  +L  G +++   +
Sbjct: 11  VLLIIAIVLGSIAAWATKNYFITKEQELIAELSKDNIKMAQVVVATQELRKGDIISEANM 70

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
                  + +    I     P    ++ G ++  P+  G P+    L        S +L 
Sbjct: 71  SVRKIQADTLPLDAIH----PKDFNQIVGQMLLEPMSPGRPLMGTYLPGHKAEQFSDILK 126

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAID-HN 182
           +G+RA T++I   ++  GM+ P+DH+D+++               ++L N+ V+A    +
Sbjct: 127 EGQRAVTINIDELNSTAGMLVPSDHIDLLLSFDEESGDIERKKLQLLLENVTVLATGRQS 186

Query: 183 IDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           +D +        +     +T TL L+   A  +  A+   K    LR+  + 
Sbjct: 187 VDVNPELADTLYDNPNAYNTVTLALSVHDAARVTLAKEKGKFVTFLRNQTES 238


>gi|167836690|ref|ZP_02463573.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           MSMB43]
          Length = 351

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 32/255 (12%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
            ++ + A+ A ++    ++               +         DL  G+++  + L W 
Sbjct: 9   ALTVIAAIGAFVMRGLFIAASRPVPPPAPVMARVRAA-----AADLPEGLLLRDSDLVWK 63

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKG 128
           + P + V  G   +     +  +L G L+R  + +G PI    ++     G L++ L  G
Sbjct: 64  SVPRDQVPPGAWAEGEPGGS--DLKGNLLRHMVREGTPIGAGDVISPNAPGFLAAALKLG 121

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTVVLSNIRVIAI 179
            RA ++ I   S   G+I+P D+VDV++ + L                  V S +RV+A+
Sbjct: 122 MRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLGTSGGPPVPPDHAIVSETVASRVRVLAV 181

Query: 180 D---HNIDSD----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-- 224
                    D                 T TLE+TP  A+A+  A  +  LSL LRS A  
Sbjct: 182 GSVFQRPKDDAAQTNSNSNSNSSARARTVTLEVTPFYAQAITLASHLGSLSLALRSFAVS 241

Query: 225 DLNPSSSEDSDVWDV 239
           + NP+S        V
Sbjct: 242 ERNPASLAPEAPAPV 256


>gi|294102190|ref|YP_003554048.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM
           12261]
 gi|293617170|gb|ADE57324.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM
           12261]
          Length = 288

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 120/256 (46%), Gaps = 23/256 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R + ++VS +  ++AG++  + +  + ++    I     + ++V+++        +
Sbjct: 1   MK-KRGIFLIVSLLLGIMAGLLVYQQIRSYKLK----IARAERELVSVVVAARPKDAFSI 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           +T   ++ V  P  ++  G +       ++ E+ G    + + +GDP+   KL  D    
Sbjct: 56  ITAEDVKVVRMPRSSIPTGEVL------SLDEVVGKASMLALSEGDPVLKGKLSLDPEKL 109

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRSLSERKPTVTVVLSNIRVIA 178
           G++  LP G+ A  + I    A GG+++P D+VDV  + R      PT  ++LS ++V+A
Sbjct: 110 GVAFQLPDGRVAIALPIDEVIAAGGLLRPGDYVDVFHVYREKDAVSPTSRLLLSRVKVLA 169

Query: 179 IDHNIDS-------DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +   +          E+ ++  +A +E++P +A     AQS+  + L LR     N  + 
Sbjct: 170 LGGVLTRKEEKEGTKEKEMLARSAVVEVSPEEAAVAAWAQSLGSVWLALRPA---NEETL 226

Query: 232 EDSDVWDVQEEGKEIQ 247
             + V+   E   E Q
Sbjct: 227 TPAVVYKGPEVSPEPQ 242


>gi|251789645|ref|YP_003004366.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591]
 gi|247538266|gb|ACT06887.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591]
          Length = 308

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 109/270 (40%), Gaps = 40/270 (14%)

Query: 1   MKLTRLMGIVVSGVFA-LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK+   + + V+ + A ++A I+  +L      Q        P +   VL++  DL+ G 
Sbjct: 1   MKINSTLLLSVALIAAGVMALIVRSQLPGTPAAQQTPAPAPIPVEKTAVLVTARDLSPGD 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            +  + + W     +         +   +   +L G  +R  I  G P+    +V     
Sbjct: 61  FIDGSAVRWQE--TDQPVSRTFYFIRGKDQESQLYGATLRGKIPAGTPLNNNSVVRPNEP 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTV-------- 167
           G ++++L  G RA ++  S+ ++  G++   D+VD+++     +    +PT         
Sbjct: 119 GFIAAVLRPGMRAISIPTSVVASNAGLVSAGDYVDIILSLRRDDEVALQPTSQQPVPPPV 178

Query: 168 ---TVVLSNIRVIAIDHNIDS----------------------DERVLVGSTATLELTPM 202
                V  N+RV+A+++  D+                       +R  +  + TLE TP 
Sbjct: 179 VGAQTVARNLRVLALNNQTDAITSMRPRQDINGAEPAQNTPQGRQRTPIYQSITLEATPK 238

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           QA+ L  A+ V  L +  RS  D +  +  
Sbjct: 239 QAEVLTVAKEVGLLQMAQRSALDTSDDAEA 268


>gi|50119733|ref|YP_048900.1| hypothetical protein ECA0788 [Pectobacterium atrosepticum SCRI1043]
 gi|49610259|emb|CAG73702.1| putative exported protein [Pectobacterium atrosepticum SCRI1043]
          Length = 314

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 103/272 (37%), Gaps = 44/272 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S        ++ + P K + VL++   L  G  
Sbjct: 1   MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPMVVKVPEK-VAVLVAAKALHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +    L W     +       + +   ++   L G  +R  + +G P+    LV     G
Sbjct: 60  IDSASLRWDE--TDKPVSRTFNFIRGKDSQSLLLGATLRETVAEGTPLTSNVLVKPNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165
            ++++L KG RA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQAELPPSRNQPVVMPLL 177

Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++    +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDKTGTPIYPRFDVAEDGTVLDATAKSRESAVRSRPTTYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           TP QA+AL  A+ +  L L LRS    + +  
Sbjct: 238 TPQQAEALAVAKELGMLHLALRSATQDDIADP 269


>gi|114797097|ref|YP_759868.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC
           15444]
 gi|114737271|gb|ABI75396.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC
           15444]
          Length = 295

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 18/233 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   L+ + +S      A       +S    +    +         + +++  +  G +
Sbjct: 1   MKAIPLISLGLSLALGAGAIFFGREFMSGDGGEANAAVAAPAIAMTQIAVARATIEPGKL 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  +++E   +PE  V  G +  V          G++V      G+P+  EK+   G+  
Sbjct: 61  IDASMVEMRDWPESAVPAGAMRAVTDLGETAYSRGLVV-----AGEPLLAEKIDTTGSVL 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----------VT 168
            L++ +  G RA ++ ++  + V G + P D VDV       + +               
Sbjct: 116 TLAANIQPGMRAVSVVVANDTGVAGFVLPGDRVDVNEFVEAKDARGAPEDSRRSADVFAQ 175

Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            VL  ++V+A+D   +   E     +T TLE+TP  A  L AA   A L L L
Sbjct: 176 PVLKGVKVLAVDQTFEEGLEGAYPSNTVTLEVTPQDALLLGAASRRAALGLAL 228


>gi|121607247|ref|YP_995054.1| SAF domain-containing protein [Verminephrobacter eiseniae EF01-2]
 gi|121551887|gb|ABM56036.1| SAF domain [Verminephrobacter eiseniae EF01-2]
          Length = 306

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
           Q   +   +  + I +L++K +L  G ++    +     P +      I     P   + 
Sbjct: 41  QVAAIEARSKKETIALLVAKRELKKGDLLATGNVAVREIPLDYAHSNAI----APEHFER 96

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           ++G  +   +  G+ +    +  R     S+ +  G+RA T+ +   +++ G+++P D +
Sbjct: 97  IEGQGIEHGLKAGEMLLWSLMQTRKAATFSARIEIGRRAITVHVDEINSISGLLEPGDAI 156

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV---LVGSTATLELTPMQAKALVA 209
           D+++      +K     +L N++V+A       D +       ST TL+ T  QA++++ 
Sbjct: 157 DLMVTLDRGGKK-ITFPLLQNVQVMATGQRSADDPKSGERRQYSTVTLDTTQAQAQSVIV 215

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
           A+   K++ +LR+  D    + + + +  +  +  + Q +  G    
Sbjct: 216 AREAGKITALLRNPQDTQVQAGDSAAIAALLGQAGDAQSLADGAAGR 262


>gi|37680195|ref|NP_934804.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
 gi|37198942|dbj|BAC94775.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
          Length = 279

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 96/271 (35%), Gaps = 25/271 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            + V    ++   +     +     Q              VL +   LA G  +    L 
Sbjct: 5   YMAVFAALSIALFLAGFVWLDTSQAQPPSQPLSTVEHKAKVLTTNRALAKGSFIERENLV 64

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLP 126
           W               +     ++++ G +    I     +  E L+       LS+L+ 
Sbjct: 65  WKEVSLAERESLGEVFLQPVFELEQIAGSVAVQFIPADSVLSPEMLLRPEQSDFLSALVK 124

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----------TVTVVLSNIRV 176
            G RA ++++   +A  G+++P + VDV++       +            V  VL NI +
Sbjct: 125 PGMRAISIELDPMAAGLGLLRPGNKVDVLLTSQSEIDQDANGTPIYNNMAVETVLQNIHL 184

Query: 177 IAID------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +AI          +   +    ++ T E++   A+ LV A  + +LSLVLR   D    +
Sbjct: 185 LAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGNNDQTEVA 244

Query: 231 SED--------SDVWDVQEEGKEIQIIKAGV 253
           ++               Q+  + + +I+  V
Sbjct: 245 NKPLKWAKDISGAYDLEQQPTQSVTVIRGNV 275


>gi|27365650|ref|NP_761178.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
 gi|320156052|ref|YP_004188431.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O]
 gi|27361798|gb|AAO10705.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
 gi|319931364|gb|ADV86228.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O]
          Length = 279

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 95/271 (35%), Gaps = 25/271 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            + V    ++   +     +     Q              VL +   LA G  +    L 
Sbjct: 5   YMAVFAALSIALFLAGFVWLDTSQAQPPSQPLSTVEHKAKVLTTNRALAKGSFIERESLV 64

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLP 126
           W               +     + ++ G +    I     +  E L+       LS+L+ 
Sbjct: 65  WKEVSLAERESLGEVFLQPVFELDQIAGSVAVQFIPADSVLSPEMLLRPEQSDFLSALVK 124

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----------TVTVVLSNIRV 176
            G RA ++++   +A  G+++P + VDV++       +            V  VL NI +
Sbjct: 125 PGMRAISIELDPMAAGLGLLRPGNKVDVLLTSQSEIDQDANGTPIYNNMAVETVLQNIHL 184

Query: 177 IAID------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +AI          +   +    ++ T E++   A+ LV A  + +LSLVLR   D    +
Sbjct: 185 LAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGNNDQTEVA 244

Query: 231 SED--------SDVWDVQEEGKEIQIIKAGV 253
           ++               Q+  + + +I+  V
Sbjct: 245 NKPLKWAKDISGAYDLEQQPTQSVTVIRGNV 275


>gi|330830433|ref|YP_004393385.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565]
 gi|328805569|gb|AEB50768.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565]
          Length = 296

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 23/232 (9%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           S    +     +  P +   VL++   +  G  + P  L W A PE    +     +   
Sbjct: 30  SGASPRDPPAESLAPDRVAQVLVAAHRVQAGSFIHPEDLRWQALPEAEERNLPGLFLFGF 89

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMI 146
              + L G LV   +  G  +  + LV    +  LS+++  G RA T+ +   +A  G+I
Sbjct: 90  TDTKALKGSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLI 149

Query: 147 KPNDHVDVVMVRSLSER----------KPTVTVVLSNIRVIAIDHNIDSDERVLVGS--- 193
           +P + VDV++    + +            +  ++L++I+++AID  + +D   L G+   
Sbjct: 150 RPGNRVDVILTSKHARQHNAQGAEVTSNQSAEIILTDIKLLAIDAQV-TDIAALNGNPAA 208

Query: 194 -------TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
                    T EL P  A  L+ A  + +L+LVLRS     P+ S    + +
Sbjct: 209 QDNFDQVAVTFELPPRAAARLLLAHRLGELALVLRSAQ-SAPAGSPAMALPE 259


>gi|127511580|ref|YP_001092777.1| SAF domain-containing protein [Shewanella loihica PV-4]
 gi|126636875|gb|ABO22518.1| SAF domain protein [Shewanella loihica PV-4]
          Length = 298

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 116/281 (41%), Gaps = 25/281 (8%)

Query: 1   MKLTRL----MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56
           MKL  +    + +V++ +   ++             +  + +T++     +V+++   L 
Sbjct: 1   MKLKSIDFNWVLLVIALILGGISAWATKNYFIAKEQELRDELTKDNIAMADVIVATQPLK 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G +++   +       + +    I     P+   E+ G ++  P+  G P+    L   
Sbjct: 61  KGDIISQANMSVRQIRADTLPLDAIH----PSRFGEVAGQMLLQPMAPGRPLIETYLPGM 116

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSN 173
                S +L +G+RA T+DI   ++  GM+ P+DH+D+++      R        ++L +
Sbjct: 117 RVAQFSDILKEGQRAVTIDIDEINSSAGMLVPSDHIDLLLSFKEEGRNGERKRLQLLLED 176

Query: 174 IRVIAIDHN-IDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           + V+A     ID +        +     +T TL L+   A  +  A+       +LR+  
Sbjct: 177 VTVLATGRRSIDVNPELVDTLYDNPNAYNTVTLALSVNDAARVSLAKQKGDFVTLLRNQK 236

Query: 225 DLNPS---SSEDSDVWDVQEEGKE--IQIIKAGVIVNKDGE 260
           + +     S  +  +++ +EE  E  +++I  G  +    +
Sbjct: 237 ESSALEFISMHEGQLFNREEENHELAVEVITGGSGIKTSTQ 277


>gi|167620126|ref|ZP_02388757.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           Bt4]
          Length = 234

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 34/235 (14%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA------------- 89
            + + V ++  DL  G+++    L W      +V  G + +                   
Sbjct: 1   PQQVRVRVAAADLPAGLLLRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAA 60

Query: 90  -MQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
              +L G L+R P+ +G P+    ++     G L++ L  G RA ++ I   S   G+I+
Sbjct: 61  AAGDLKGDLLRHPVREGMPLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIE 120

Query: 148 PNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGS 193
           P D+VDV++ + L          ER      + + +RV+A+         D+ +      
Sbjct: 121 PGDYVDVLLTQQLAAPGGAPADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRAR 180

Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248
           T T E++   A+ +     +  LSL LRS A     +S+   V     E     +
Sbjct: 181 TVTFEVSSHDAQVITVGAHLGALSLALRSFA-----TSDRGAVGLASAEPPAPPV 230


>gi|227326301|ref|ZP_03830325.1| hypothetical protein PcarcW_02899 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 314

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 103/275 (37%), Gaps = 44/275 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S        V+ + P     VL++  DL  G  
Sbjct: 1   MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPVVVKAPEPT-KVLVAAKDLHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +  + L W     E       + V+  +    L G  +R P+ +G  +    +V+    G
Sbjct: 60  LDSSSLRWQE--TEKSVSRAFNFVYGQDKQSLLLGATLREPVKEGSWLSSNVVVNPNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165
            ++++L KG RA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQSELPASRNQPVVMPLL 177

Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++    +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDKTGTPVYPRFDTAEDGTVLDATAKSRESAVRSRPATYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           TP QA+AL  A+ +  L L LRS    +       
Sbjct: 238 TPQQAEALAVAKELGILHLALRSADLDDSVDPATG 272


>gi|301165541|emb|CBW25112.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
          Length = 271

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 112/272 (41%), Gaps = 30/272 (11%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
           +   AL+  + AM +V  +    +  I +   K  +V+I+K D+    ++  + +   + 
Sbjct: 5   ALTLALIIAVFAMFMVYTYIDDEKTKIIKKYGKEQSVVIAKVDIKELELIDDSKVTVTSM 64

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKR 130
           P   V +     +      +E+   +  VPILKG+ I   ++       GLS  +  GKR
Sbjct: 65  PSNFVHEKAFKTI------KEIQNTVATVPILKGEQITKPRVSWPDERSGLSRQVAVGKR 118

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIRVIAIDHNIDSDE 187
           A ++D+S  ++VG +IKP D VD++     +  +     +  +L ++ +++   +I  + 
Sbjct: 119 AISLDVSERASVGKLIKPGDRVDILAGIDYAGGRKDLQKMKTILQDVLILSTGKSISGNL 178

Query: 188 RVLVGS-----------------TATLELTPMQAKALV--AAQSVAK-LSLVLRSIADLN 227
            ++                    T TLEL P + + LV   + +      L LR+  D  
Sbjct: 179 PIIGVKTPRVIKKMKLNTYSDYGTVTLELDPYEVQKLVFILSYNSGTPPYLALRNNTDKE 238

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259
               + + ++D+  E      I         G
Sbjct: 239 VVRIKSTKLFDILGEDASEAKIFFSEKYKSQG 270


>gi|117619605|ref|YP_855990.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561012|gb|ABK37960.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 296

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 25/236 (10%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
           A +   P   Q  E      A+   VL++   +  G  + P  L W   P     +    
Sbjct: 27  APQTAVPPGEQAPE--PAASARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAEEMNLPGL 84

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSA 141
            +      + L G LV   +  G  +  + LV    +  LS+++  G RA T+ +   +A
Sbjct: 85  FLFGFTDTKALKGSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAA 144

Query: 142 VGGMIKPNDHVDVVMVRSLSER----------KPTVTVVLSNIRVIAIDHNIDSDERVLV 191
             G+I+P + VDV++    + +          K +  ++L++I+++AID  + +D   L 
Sbjct: 145 SHGLIRPGNRVDVILTSKHTHQRNAQGAEVTSKQSAEIILTDIKLLAIDAQV-TDIAALN 203

Query: 192 GS----------TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           G+            T EL P  A  L+ A  + +L+LVLRS     P+ SE   + 
Sbjct: 204 GTVAAQDNFDQVAVTFELAPSAAARLLLAHRLGELALVLRSAQ-AAPTGSEAVTLP 258


>gi|332798621|ref|YP_004460120.1| Flp pilus assembly protein CpaB [Tepidanaerobacter sp. Re1]
 gi|332696356|gb|AEE90813.1| Flp pilus assembly protein CpaB [Tepidanaerobacter sp. Re1]
          Length = 264

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 97/273 (35%), Gaps = 46/273 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +K  RL+ ++ + V  +   +I   L     +          +K I V+ +  ++A    
Sbjct: 3   LKKIRLIALIAALVTCISLYLIVSNLQKGGSIALN-------SKTITVVTATQNIAPYTK 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +T  ++        +    +         + ++ G + +  I  G+ I   ++    +  
Sbjct: 56  ITAEMVSAQNITASDGIQNYFT------QIGDVVGKICKSDIYAGEVITSNRIAGEKDIS 109

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------- 168
            GL++ L  G RA T+ + +   V   IK  ++VDV+ V  +       T          
Sbjct: 110 LGLATQLENGMRAVTIAVDVEQGVAATIKAGNYVDVIYVNKVDGGSGDTTASSYLNSAAG 169

Query: 169 --------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
                                 L N++V+A+D+    D+      + TL +TP QA  L 
Sbjct: 170 AKNPVNSQTLYHNYGQYFAVTALQNVKVVALDNVFYKDDTKTSYQSVTLGVTPEQAAQLA 229

Query: 209 A-AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
                   + L LR   D    S    +V++  
Sbjct: 230 LMCDGEGTIRLSLRPQEDKTMISEPRGEVFENT 262


>gi|261820213|ref|YP_003258319.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163]
 gi|261604226|gb|ACX86712.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163]
          Length = 312

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 44/265 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S        V+ + P K   VL++  DL  G  
Sbjct: 1   MKVNSTYVLSGALVLAGIVALVVRSHLSSAPPPPPPVVVQAPEKTA-VLVAAKDLHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +    L W    EE V     + V   ++   L G  +R  + +G  +    LV +   G
Sbjct: 60  IDSASLRWQ-VTEEPV-SRTFNFVRGKDSQSLLFGATLRETVTEGSALTNNVLVRQNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165
            L+++L KGKRA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FLAAVLGKGKRAISVPTSAVASNAGLVAAGDRVDVILSMKRDDQPELPASRNQPVVMPLL 177

Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++    +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDRTGTPVYPRLDAMEDGATLDAAAKSRESAVRSRPATYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIA 224
           TP QA+AL  A+ +  L L LRS  
Sbjct: 238 TPQQAEALAVAKELGILHLALRSAT 262


>gi|227114875|ref|ZP_03828531.1| hypothetical protein PcarbP_18020 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 314

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 112/310 (36%), Gaps = 55/310 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S        V+ + P K   VL++  DL  G  
Sbjct: 1   MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPVVVKAPEK-AAVLVAAKDLHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P+ L W     +       + V   +    L G  +R  + +G  +    +V     G
Sbjct: 60  IDPSSLRWQT--TDEPVSRSFNFVRGQDNQSLLLGATLRETVTQGSWLSSNVVVKPNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165
            ++++L KG RA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FVAAVLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPASRNQPVVMPLL 177

Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++    +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDKTGTPIYPRFDAAEDGTVLDATAKSRESAVRSRPATYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE-----------DSDVWDVQEEGKEIQI 248
           TP QA+AL  A+ +  L L LRS    +                 +D++     G   + 
Sbjct: 238 TPQQAEALAVAKELGILHLALRSADLDDVVDPTTGRPHVTTVPLATDIYGAFSAGSGERK 297

Query: 249 IKAGVIVNKD 258
           +K      KD
Sbjct: 298 VKIYRAAQKD 307


>gi|113867003|ref|YP_725492.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
 gi|113525779|emb|CAJ92124.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
          Length = 343

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 104/256 (40%), Gaps = 27/256 (10%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            L+   I   L        E++  + N  + + V++   + A G V+  N       P +
Sbjct: 26  GLLTLWIYHFLSGREAALKEQLAAQLNEGRRVAVMVPVRNAAPGTVIDGNGFAAREIPAD 85

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134
            V++  I      ++  ++  + +   + +G P+R   +    +   S LL  GKRA T+
Sbjct: 86  LVYEDMI----LASSFDKVANLRLVRQVRQGQPVRRADVEALQSRDFSDLLKPGKRAFTI 141

Query: 135 DISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
           ++ + ++   M+KP +HVD+ ++ S         K T  +++S++ V+A   ++   +  
Sbjct: 142 EVDMVNSTAKMLKPGNHVDLFLISSTSPTAAGTDKQTARLLMSDMLVLATGQDVRPRDYG 201

Query: 190 LV-----------------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
                                + TL ++P QA  L  AQ V  L  VLR+ AD   +   
Sbjct: 202 EAMAAQAAEGAEGVDTNPDYDSLTLMVSPEQAARLALAQKVGSLRAVLRNAADKTATPQI 261

Query: 233 DSDVWDVQEEGKEIQI 248
                 +   G E  I
Sbjct: 262 AVSEHALFAGGDEAAI 277


>gi|296134297|ref|YP_003641544.1| Flp pilus assembly protein CpaB [Thermincola sp. JR]
 gi|296032875|gb|ADG83643.1| Flp pilus assembly protein CpaB [Thermincola potens JR]
          Length = 257

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 102/264 (38%), Gaps = 43/264 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   ++  + V+   AL+  +     +         V T+       V+++  ++    V
Sbjct: 1   MSNKKI--LFVAVFLALLTTLAMNYYLEQVKKAATNVTTKK------VVVANVNIPARTV 52

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118
           +T +++     PEE V    + D       +++ G +    I  G+ +  EK++ +    
Sbjct: 53  ITGDMVSVKDVPEEFVHPNAVLDE------EQVIGFVSGSDISAGEQVLREKILRKEGNP 106

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------T 166
             LS  +P G RA ++ I+  + VGG+++P D VDV+    L    P             
Sbjct: 107 VSLSYQVPLGSRAMSVPINEVTGVGGLVRPGDRVDVIGTIELETSNPASNQQTGPTQTTV 166

Query: 167 VTVVLSNIRVIAIDHN---------------IDSDERVLVGSTATLELTPMQAKALVAAQ 211
             V+L N+ V+A+  N                 +++        TL +   + +AL    
Sbjct: 167 AHVLLQNVEVLAVGDNFTPATNRAVNQGKEDAKNNQSDTGAKNVTLAIPADKMQALTLML 226

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
              K++L LRS  D +       D
Sbjct: 227 DHGKVTLALRSPLDQSRYDRPPFD 250


>gi|253687067|ref|YP_003016257.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753645|gb|ACT11721.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 314

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 104/272 (38%), Gaps = 44/272 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S        V+ + P K I VL++  DL  G  
Sbjct: 1   MKVNSTYVLSGAFVLAGIVALVVRSHLSSEPPAPPPVVAKAPEK-IAVLVAAKDLHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +  + + W     +       + V   ++   L G  +R  + +G  +    +V     G
Sbjct: 60  IDSSSVRWQT--TDESVSRSFNFVRGRDSQFLLFGATLRETVKEGTQLSSNVVVKPNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165
            ++++L KG RA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FVAAVLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPVSRNQPVVMPLL 177

Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++  + +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDKVGTPVYPRLDAMEDGAALDAAAKSRESAVRSRPATYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           TP QA+AL  A+ +  L L LRS    +    
Sbjct: 238 TPQQAEALTVAKELGILHLSLRSATQDDVVDP 269


>gi|304311184|ref|YP_003810782.1| Flp pilus assembly protein [gamma proteobacterium HdN1]
 gi|301796917|emb|CBL45130.1| Flp pilus assembly protein [gamma proteobacterium HdN1]
          Length = 283

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
            +    +     Q  + I +   + I V+++  DL +G VVT         P+  V    
Sbjct: 26  FLTQNYIKTEVTQRNKAIDQQ-REAIQVVVASADLNIGDVVTLKNAVVRDIPKTFVPSEA 84

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +      N    L+G  ++  +  G+ I    +      G+ SLL  G+RA T+ +    
Sbjct: 85  VT---PANFAATLEGRQLKYKVKYGEVILPMHVSSTKIEGIVSLLEPGERAITIPVGKED 141

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI---------DSDERVLV 191
            + G ++P   VD+ +         T    L  ++VIA    +         D  +    
Sbjct: 142 TISGFLRPGSRVDLFLTLKDGAVSRTA-PFLQRVKVIATGTELNDGIPRELKDPKKLQKT 200

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
            S  TL +TP+QA  L+ +QSV  +++VLR   D +
Sbjct: 201 FSDVTLAVTPVQATKLIHSQSVGDIAMVLRRPEDKS 236


>gi|307726634|ref|YP_003909847.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
 gi|307587159|gb|ADN60556.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
          Length = 365

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 105/268 (39%), Gaps = 31/268 (11%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNI 65
           + +  +   A     +  + ++    + ++ I  N     + V++   DL  G  ++ + 
Sbjct: 16  VLLFAAVCVAGGLTFLLYKYLNEREARLKQQIAANKVHDAVQVVVPARDLPAGTPLSSSD 75

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
                   + V     DD+ +P+  ++     +  P+ +G P+R   +        S +L
Sbjct: 76  FVSREIQGDLV----YDDMIRPDNFEQYRTSHLVKPVRRGLPLRAGDIDALRGRDFSDIL 131

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179
           P G+RA T++I   ++   +++P + VDV  +         S+ +    +++ N+ V+A 
Sbjct: 132 PAGQRAVTVEIDTVNSTALLVRPGNRVDVYWIGKAFHQDRTSDDQRVAQLIMPNVLVLAT 191

Query: 180 DHNI---------DSDERVLVGS-----------TATLELTPMQAKALVAAQSVAKLSLV 219
             ++         + D+     S           T TL++    A  +  AQ +  L L+
Sbjct: 192 GQDLRPRDAGEASEQDQANANSSAMSRQQGMGYTTVTLQVPAEDAGRIALAQKIGGLRLI 251

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           LR+  D   +    ++  DV  +     
Sbjct: 252 LRNADDKASAGPVLTEEQDVFADPATFN 279


>gi|330819175|ref|YP_004348037.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3]
 gi|327371170|gb|AEA62525.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3]
          Length = 354

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 108/276 (39%), Gaps = 34/276 (12%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L+GI V+    +        LVS   ++  E         ++V++ + D+  G  +   +
Sbjct: 18  LIGIAVAAAGGITWVTYRYMLVSEARIKA-EAAERREGPGVSVVVPRADVPAGTPLDSAV 76

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
                   + V     DD+ Q +        ++  P+ +G P+RL+ +        S  L
Sbjct: 77  FVAREISADLV----YDDMLQVDDFTHHRNAVLVKPVRRGRPLRLQDVDATRARDFSDTL 132

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------ERKPTVTVVLSNIRV 176
             G RA T+ I   ++   M++P + VD+  V +LS             ++ +++  +RV
Sbjct: 133 AAGMRALTLPIDAINSTDSMLRPGNRVDLYWVGTLSFVTRGGDPAGDTKSIRLLMPGVRV 192

Query: 177 IAIDHNIDSDERVLVGS------------TATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           +A  H++   +                  T TL++   +A  +  AQ +  L LVLR+  
Sbjct: 193 LATGHDVRPRDAGEAARDMADGARRDGYGTVTLQVPVAEAARIALAQKLGGLRLVLRNSK 252

Query: 225 DLNPSSSEDSDVWDVQ--------EEGKEIQIIKAG 252
           D         D  ++         ++ + ++II  G
Sbjct: 253 DPGDPVQRGLDETELFAARADAPADDRERVEIITGG 288


>gi|313902402|ref|ZP_07835805.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
 gi|313467333|gb|EFR62844.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
          Length = 236

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 107/245 (43%), Gaps = 17/245 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++  ++  V A +A  I +                     + V+++   +     
Sbjct: 1   MSRGRMVRYLLLPVLAGLAVTILVAF-----YVRVPAGEAGKEPRVPVVVATRPVPAQTP 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119
           +  ++L     P + V  G +  +      +E  G + +VP+ +G+ +   KL    G+ 
Sbjct: 56  LQADMLAVRQVPADVVGRGAVGRI------EEAVGKVTKVPLAEGEFVLTSKLARGDGSD 109

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRV 176
           GL+  LP+G RA T+      AVGG ++P D VDV++          +P   +++ N+ V
Sbjct: 110 GLAYRLPEGTRALTIAADPVLAVGGFVQPGDRVDVLIGLPGGKPGVEQPEARILVENVLV 169

Query: 177 IAIDHNIDSDERVLVG--STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +A+  +  ++        +  TL + P  A A+V A+   +L L+LR   D  P+ +  +
Sbjct: 170 LAVQQDTAAEGEPAGDGLTHLTLAVAPAHAAAIVLAEQEGRLRLLLRPAGDGRPAGAVTA 229

Query: 235 DVWDV 239
            + D+
Sbjct: 230 RLADL 234


>gi|319940439|ref|ZP_08014784.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806065|gb|EFW02814.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis
           3_1_45B]
          Length = 321

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 116/288 (40%), Gaps = 44/288 (15%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINV-----LISKGDLA 56
           K + L+ +  + V A  A  +A  L++PH  +      +  A    V       +   + 
Sbjct: 4   KTSSLLLLGFAVVLAGCAAFVARGLLAPHAAERPAAAAQAKASEAQVPPVWAAAAAKPVE 63

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPN--AMQELDGVLVRVPILKGDPIRLEKLV 114
            G  ++   ++WV    +      I      +  A   L G  VR  + +G+ I  + ++
Sbjct: 64  PGEFLSGTAIKWVEMKADEAPASAISAKRPGDRTAAALLMGATVRRSVPQGELITQDDVL 123

Query: 115 DRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--------------RS 159
             GN G L+++L  GKRA ++  S  S+  G++   D VDV++               ++
Sbjct: 124 YPGNPGFLAAVLSPGKRAVSIPTSAVSSNSGLVSAGDWVDVILTLKRETAEAMADQQDKT 183

Query: 160 LSERKPTVTVVLSNIRVIAID--------------HNIDSDERVLVG------STATLEL 199
               K     +L+N+RV+A++                 D+ +            T TLE+
Sbjct: 184 SGMTKLAAQTILTNVRVLALNNSTESIAPQPETAPQKTDAKKTASTAARRVDYRTITLEV 243

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           TPM+A+AL  A+    L + +R +    P + + +    V E+   + 
Sbjct: 244 TPMEAQALAVAKEAGDLQVSIRGL--REPETKDAAGTSAVNEKTAAVT 289


>gi|119773844|ref|YP_926584.1| Flp pilus assembly protein CpaB-like protein [Shewanella
           amazonensis SB2B]
 gi|119766344|gb|ABL98914.1| Flp pilus assembly protein CpaB-like protein [Shewanella
           amazonensis SB2B]
          Length = 298

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 100/246 (40%), Gaps = 20/246 (8%)

Query: 1   MKLTRL----MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56
           M+  R+    + + ++ V   +A             +    ++ +  K ++V+++  +L 
Sbjct: 1   MQSKRIDFNWVLLGIALVLGSLAAWATKNYFIVKEQEIRAELSNSNVKMVDVVVATQELR 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G +V    +   +   + +    I    +P+   E+ G ++   +  G P+    L   
Sbjct: 61  KGDIVDETNMSVRSIRADVIPLDAI----RPSQFNEVAGQMLLSEMSPGRPLISAYLPGF 116

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSN 173
                S LL +G+RA T+DI+  ++  GM+ P+D VD+ +  ++         + +++  
Sbjct: 117 KTRQFSDLLQEGQRAVTIDINEENSTAGMLVPSDLVDLFLSYTVENGDSERVKMELLIEK 176

Query: 174 IRVIAIDHNI---------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            +V+A                 +     +T TL L+   A  +  A+   K   +LR+ A
Sbjct: 177 AQVLATGKRSIDVHPELVNSIYDNPDSYNTVTLALSTEDAIRVSLAKGRGKFVTLLRNKA 236

Query: 225 DLNPSS 230
           +  P +
Sbjct: 237 ESAPVA 242


>gi|297581607|ref|ZP_06943529.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385]
 gi|297534014|gb|EFH72853.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385]
          Length = 294

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 27/268 (10%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPA--------KFINVLISKGDLAVGMVVTPNILEWVAF 71
            I+++  +      T   +++  A             L +K  +  G ++      WV  
Sbjct: 16  AILSIAWMQNSRPSTSPSVSKPTAVSSLPEKAATPRALAAKYPVQAGALLRAQDFHWVEL 75

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKR 130
             E+        +   + +  L+G L+     +   + +  ++    +  +S++L  GKR
Sbjct: 76  GSEHNASLNDLFLENFSQLDALEGSLITRHQDESQLLNVNDIIRPEQSHYVSAMLAPGKR 135

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVIAID----- 180
           A T++++ +    G+++P + VDVV+       S S  K   T VL  +R++AI      
Sbjct: 136 AVTLELTQAGVSHGLLRPGNWVDVVLTNESNVESASTPKYAATTVLEGVRLLAIGSVVTE 195

Query: 181 ----HNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
                ++++            T E++P  AK L+ AQ +  LSLVLRS  + + +  E+ 
Sbjct: 196 FIAKQSVENGANPNSYEPVRVTFEVSPSDAKHLLLAQRLGVLSLVLRSQFESDLAEMEEG 255

Query: 235 DV-WDVQ-EEGKEIQIIKAGVIVNKDGE 260
            + WD Q  E    + +    +   DGE
Sbjct: 256 SILWDEQVSESFNPESLPRKTVRIFDGE 283


>gi|296158513|ref|ZP_06841343.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
 gi|295891081|gb|EFG70869.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
          Length = 365

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 110/286 (38%), Gaps = 44/286 (15%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNI 65
           + + ++ + A     +  + ++    + +  +  +  +  + V++   D  VG  ++   
Sbjct: 16  VLLFLAVLVAGGLTFLLYKYLNDREKKLKADLDAHRVRAGVTVVVPAQDAPVGTPLSSGN 75

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
                   + V     DD+ + +  ++     +  P+ +G P+R   +        S +L
Sbjct: 76  FVAREIAGDLV----YDDMIRADGFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDFSDIL 131

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179
             G RA T++I   ++   +++P + VDV  V  +      S+ K    +V+ N+ V+A 
Sbjct: 132 RPGTRALTVEIDTVNSTALLLRPGNRVDVYWVGKVFHENRTSDEKKVAQLVMPNVLVLAT 191

Query: 180 DHN---------IDSDERVLVGS-----------TATLELTPMQAKALVAAQSVAKLSLV 219
             +            D+     S           T TLE+       +  AQ +  L L+
Sbjct: 192 GEDMRPRDAGEAAQQDQANANSSAMSRQTGMGYTTVTLEVPVDDVARIALAQKIGGLRLI 251

Query: 220 LRSIAD---LNPSSSEDSDVW----------DVQEEGKEIQIIKAG 252
           LR+  D     PS +++SDV+                + +++I  G
Sbjct: 252 LRNSEDKGADGPSLAQESDVFIDPARGHVTSGTGPAPQTVEVISGG 297


>gi|323529160|ref|YP_004231312.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
 gi|323386162|gb|ADX58252.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
          Length = 363

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 100/267 (37%), Gaps = 31/267 (11%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-INVLISKGDLAVGMVVTPNI 65
           + + V+   A     +  + ++    + +  I  N  +  I V++   DL  G  ++ + 
Sbjct: 16  VLLFVAVCVAGGLTFLLYKYLNERETKLKAEIAANKVRTDIAVVVPARDLPAGTPLSSSD 75

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
                   + V     DD+ +P    +     +  P+ +G P+R   +        S +L
Sbjct: 76  FVSREIQGDLV----YDDMVRPENFDQYRASHLVKPVRRGLPLRAADIDALHGRDFSDVL 131

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179
           P G+RA T++I   ++   +++P + VDV  +         S+ +    +++++  V+A 
Sbjct: 132 PAGQRAVTVEIDTVNSTALLLRPGNRVDVYWIGKAFHQDHTSDDRRVAQLMMADALVLAT 191

Query: 180 DHNIDSDERVLVG--------------------STATLELTPMQAKALVAAQSVAKLSLV 219
             ++   +                         +T TL++       +  AQ +  L L+
Sbjct: 192 GQDLRPRDAGEAAEHDQANANSSAMSRQEGMGYTTVTLQVPAEDVGRIALAQKIGGLRLI 251

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEI 246
           LR+  D         +  DV  +   +
Sbjct: 252 LRNADDKATGGPALVEEKDVFIDPANV 278


>gi|91777218|ref|YP_552426.1| putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400]
 gi|91689878|gb|ABE33076.1| Putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400]
          Length = 363

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 108/268 (40%), Gaps = 34/268 (12%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNI 65
           + + ++ + A     +  + ++    + +  +  +  +  + V++   D+ VG  ++   
Sbjct: 16  VLLFLAVLVAGGLTFLLYKYLNDREKKLKADMDAHRVRAGVTVVVPAQDVPVGTPLSSGD 75

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
                   + V     DD+ + +  ++     +  P+ +G P+R   +        S +L
Sbjct: 76  FVAREIAGDLV----YDDMIRADNFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDFSDVL 131

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179
             G RA T++I   +A   +++P +HVDV  V  +      S+ K    +V+ N+ V+A 
Sbjct: 132 RPGTRALTVEIDTVNATALLLRPGNHVDVYWVGKVFHEDHTSDEKKVAQLVMPNVLVLAT 191

Query: 180 DHN---------IDSDERVLVGS-----------TATLELTPMQAKALVAAQSVAKLSLV 219
             +            D+     S           T TLE+       +  AQ +  L L+
Sbjct: 192 GEDMRPRDAGEAAQQDQANANSSAMSRQAGMGYTTVTLEIPVDDVARVALAQKIGGLRLI 251

Query: 220 LRSIAD---LNPSSSEDSDVWDVQEEGK 244
           LR+  D     PS +++SDV+     G+
Sbjct: 252 LRNSEDKGADGPSLAQESDVFIDPARGR 279


>gi|51468905|emb|CAE47778.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 314

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 31/259 (11%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            ++ AG+ A  L+  +  + +    +       V+++K D+A    +   ++E    P +
Sbjct: 24  LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPAD 83

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAAT 133
            +    I          E+ G +  VPI KG  +    L+  G + G+S  +   KRA T
Sbjct: 84  FIQPDAIT------IPDEIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKRAVT 137

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNIRVIAIDHNI------- 183
           + +     V  +I+P D +D+           ++  V  +++++ V+A   ++       
Sbjct: 138 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 197

Query: 184 ---DSDERVLV---------GSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229
              DS  + L           +T T+E TP +A+ L  + + +   L + LR+ +D    
Sbjct: 198 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 257

Query: 230 SSEDSDVWDVQEEGKEIQI 248
               S   D       + +
Sbjct: 258 PRMPSSTSDSVLGKPMVSV 276


>gi|325111215|ref|YP_004272283.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
 gi|324971483|gb|ADY62261.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
          Length = 349

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 25/243 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +    +  I++  +  L+A  I            +E+ T        V ++  D+  G +
Sbjct: 4   LTPAFITLIMLIVIGGLIAVYIGKSFFYTEPAPPQEISTRL------VPMAGSDIPAGTL 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + +         + +  +      N  + + G      I +  PI    L   G   
Sbjct: 58  ITSDHIV-----RGRLREDKMTRETILND-EAIIGRYSLTDIKQAQPILTSDLYAPGER- 110

Query: 121 LSSLLPKGKRAATMDISISSAV-GGMIKPNDHVDVVMVRSLS-----ERKPTVTVVLSNI 174
               L  G +A T+ +  S++V  G+I+P D+VDV +  S        R      V   I
Sbjct: 111 PPLELEPGMQAVTVSLGDSTSVVDGLIEPGDYVDVHLTVSDDLSDSRYRGGFTMTVFKGI 170

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           RV+A++            +T T ELTP Q+  ++ AQ    +++        NP    D 
Sbjct: 171 RVLAMNRLTQPTNISRGANTVTFELTPSQSNIILEAQRHGTITVS------YNPDGPGDG 224

Query: 235 DVW 237
            V 
Sbjct: 225 GVA 227


>gi|254487761|ref|ZP_05100966.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101]
 gi|214044630|gb|EEB85268.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101]
          Length = 198

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 9/153 (5%)

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           E++G +V+V     + I   K+   G + GL+S L +G RA T+ + +SS V G ++P D
Sbjct: 5   EVNGDVVQVVARSFEAILAAKVTAPGEDTGLTSRLARGTRAFTIKVDVSSGVSGFLRPGD 64

Query: 151 HVDVVMVRSLS-------ERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPM 202
            VDV     ++              ++ + +++IAID +   +     +  T T+ + P 
Sbjct: 65  RVDVYWTGRITVGDSNLRNAGDVTKLIEAGVQLIAIDQSAGGEMNEANIAQTVTVAVKPS 124

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           Q  AL  AQS  KLSL L    D   + + + D
Sbjct: 125 QVAALAQAQSTGKLSLSLVGADDDTIAGAIEVD 157


>gi|226325180|ref|ZP_03800698.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758]
 gi|225206528|gb|EEG88882.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758]
          Length = 497

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 10/233 (4%)

Query: 2   KLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           K++RL  +     V A++AG +A+       +     I E  +    V+ +   +  G  
Sbjct: 272 KVSRLQKVTAGLAVIAVLAGGVAVV----SEIDANNRIAEAFSGTTEVVAATKTIHAGDE 327

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           ++ + L +V+ P   V DG I      ++ +   G +    I KG  +       + N  
Sbjct: 328 ISASDLAFVSVPNSTVADGAITKKDIDDSSKTPVGRVATQYIAKGSQLTNASTAGKDNPE 387

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L++ +  G  A T+ +   S +GGM++ ND V V+     S      TV+  ++R+ A+
Sbjct: 388 SLAAAIGDGMEAVTISVDAQSGMGGMLRVNDRVKVIQPNDGSLGGDGFTVIADSVRIAAL 447

Query: 180 DHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           D N           ST TLE+TP QA  +   ++   L+L L S AD   S  
Sbjct: 448 DGNFSSGSGSSDGYSTVTLEVTPEQAGKI---RTAGGLTLTLPSSADTTESGE 497


>gi|42521753|ref|NP_967133.1| putative flp pilus assembly protein CpaB [Bdellovibrio
           bacteriovorus HD100]
 gi|39574283|emb|CAE77787.1| putative flp pilus assembly protein CpaB [Bdellovibrio
           bacteriovorus HD100]
          Length = 301

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 31/259 (11%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            ++ AG+ A  L+  +  + +    +       V+++K D+A    +   ++E    P +
Sbjct: 11  LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPAD 70

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAAT 133
            +    I          E+ G +  VPI KG  +    L+  G + G+S  +   KRA T
Sbjct: 71  FIQPDAIT------IPDEIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKRAVT 124

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNIRVIAIDHNI------- 183
           + +     V  +I+P D +D+           ++  V  +++++ V+A   ++       
Sbjct: 125 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 184

Query: 184 ---DSDERVLV---------GSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229
              DS  + L           +T T+E TP +A+ L  + + +   L + LR+ +D    
Sbjct: 185 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 244

Query: 230 SSEDSDVWDVQEEGKEIQI 248
               S   D       + +
Sbjct: 245 PRMPSSTSDSVLGKPMVSV 263


>gi|281356955|ref|ZP_06243445.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548]
 gi|281316513|gb|EFB00537.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548]
          Length = 264

 Score =  121 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 104/258 (40%), Gaps = 21/258 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+      ++ + VF L+A ++     S   ++ E+      ++ + ++    D A    
Sbjct: 1   MRQK--FLLLGAVVFGLLAFVL-----SYQQLEAEKRRIIGDSETVVLIKLAVDKAPNEE 53

Query: 61  VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           + P  L  V +P     +   +      + +  + G  +   +  G  ++   L      
Sbjct: 54  LQPGDL--VRYPVRRSREMQSMSREIPWSEVSRVIGRQLETTMTAGQVLQSTDLKPMTQR 111

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RSLSERKPTVTVVLS 172
            G + ++  G RA  + +   S+V  +I+PND VDV+        R  S        +L 
Sbjct: 112 QGFNGVIRPGMRAVAIPVDPVSSVNNLIQPNDDVDVIGTFRFPDVRGDSSLDTVTLTILQ 171

Query: 173 NIRVIAIDHNIDSDE----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           +++V+A+ +   S            T TL L P + + ++ A    KL+L LR+  D+  
Sbjct: 172 DVKVLAVGNRWGSASLDPAGARSYGTVTLLLYPEEVEMIIFASQKGKLNLSLRNFEDVKI 231

Query: 229 SSSEDSDVWDVQEEGKEI 246
           S   +    + ++  KEI
Sbjct: 232 SRETEKRSVNFKQLEKEI 249


>gi|76663414|emb|CAE47790.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 302

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 31/250 (12%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            ++ AG+ A  L+  +  + +    +       V+++K D+A    V   ++E    P +
Sbjct: 11  LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTVYDTMVETKELPAD 70

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAAT 133
            +    I          E+ G +  VPI KG  I    L+  G + G+S  +   KRA T
Sbjct: 71  FIQPDAIT------VPDEIIGNVAAVPIRKGQMIVKNNLLTPGPDTGISLQVAPSKRAVT 124

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNIRVIAIDHNI------- 183
           + +     V  +I+P D +D+           ++  V  +++++ V+A   ++       
Sbjct: 125 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 184

Query: 184 ---DSDERVLV---------GSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229
              DS  + L           +T T+E TP +A+ L  + + +   L + LR+ +D    
Sbjct: 185 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 244

Query: 230 SSEDSDVWDV 239
               S   D 
Sbjct: 245 PRMPSSTSDS 254


>gi|319795563|ref|YP_004157203.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS]
 gi|315598026|gb|ADU39092.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS]
          Length = 319

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 99/259 (38%), Gaps = 25/259 (9%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
             L +        +  +  ++  +V++++  +  G  V P ++   + P E + +  +  
Sbjct: 36  YYLRASEREIAASLEKDADSQRRDVVVARQPIGEGSQVLPGMVAKRSVPNEYLHNDALT- 94

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143
              P +  +  G  + VP+  G P+             +  + +G RA T+ +   S++ 
Sbjct: 95  ---PESFAQFAGRQLTVPVAAGKPLLASFFAAPRKVF-AQEIEQGVRAVTIPVDEISSIS 150

Query: 144 GMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIRVIAIDH---------------NIDSD 186
           GM++  D +D + V   S       V+  L ++ V A                  + D+D
Sbjct: 151 GMLRAGDRIDFMYVVEKSAANDPSVVIPLLQDVEVRATGQITSEQFAAMRKRADVSADTD 210

Query: 187 ERVL-VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS--EDSDVWDVQEEG 243
                  +T T+ + P  A+ L+ AQ + K+   LR+  D    ++  +  D+  +    
Sbjct: 211 PYARQRYATVTVAVQPQDAQKLILAQRLGKIIATLRNPEDRATMTTGVDAVDLDAIVSGF 270

Query: 244 KEIQIIKAGVIVNKDGEGI 262
           +  + +         G G+
Sbjct: 271 RPQRAVPVAASHAAGGSGV 289


>gi|149175454|ref|ZP_01854075.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797]
 gi|148845722|gb|EDL60064.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797]
          Length = 367

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 17/225 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      + +  +F +   +IA  +        EE     P    N+ ++  +L  G +
Sbjct: 1   MKSLTPAKVTL-LMFGVFGVLIAAYIGKRLLAGKEEA---PPVATRNIPMAISELEPGTL 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           VT   L       +N+    +       + + + G +V+  I    PI   +L   G   
Sbjct: 57  VTDEHLGLGPIAIKNLKPEMMT------SNRVIVGRIVKERIPAATPISTGQLYPAGE-T 109

Query: 121 LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSNI 174
               +  G RA ++ + S    V G+IKP ++VDV M  +               + + +
Sbjct: 110 PPIQVEPGMRAISVSLESSVDLVDGLIKPGEYVDVHMTPTGMNNDKRLNGGMTLTLFNGV 169

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           RVIAI+ +   +     G+  TLELTP QA  ++ A+   ++++ 
Sbjct: 170 RVIAINRSYTQNSSSRRGTNVTLELTPEQANIMILARDRGEITMS 214


>gi|78486069|ref|YP_391994.1| Flp pilus assembly CpaB [Thiomicrospira crunogena XCL-2]
 gi|78364355|gb|ABB42320.1| Flp (type IV) pilus assembly protein CpaB homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 296

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 110/266 (41%), Gaps = 36/266 (13%)

Query: 1   MKLTRLMGIV--VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN------VLISK 52
           MKL     +V  ++ + A++A ++    V     + E   +      +       ++++ 
Sbjct: 1   MKLKTSDWVVYGIAALSAILAIVLVYGYVQNRVAEAEANASTKTITVVEKPELHSIVVAS 60

Query: 53  GDLAVGMVVTPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
            D+  G  +  + ++ +  P E  V  G I +       Q   G +    I  G+ I  +
Sbjct: 61  RDIYRGEKIEADDVKVLNVPMEGLVVKGVIINP------QNAVGHVAHQKIYAGEWILAK 114

Query: 112 KLVDRGNG---GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TV 167
           KL          + +LL K +RA  + I   + + G+I P DHVDV+ V   ++ K    
Sbjct: 115 KLKLESQSRFQSVEALLEKTRRAIRLPIEPDTGLLGIISPGDHVDVISVFESADSKRMVS 174

Query: 168 TVVLSNIRVIAID----------------HNIDSDERVLVGST-ATLELTPMQAKALVAA 210
             +L NI V++I                  N+ ++++     +   L++   QA+ L  A
Sbjct: 175 RTILQNITVLSIGIENQMRASTADSEEDNQNLFANKQASNKKSMVALDVDTTQAEKLALA 234

Query: 211 QSVAKLSLVLRSIADLNPSSSEDSDV 236
            +V  + L+LR+ AD     ++  ++
Sbjct: 235 MNVGAIHLLLRNSADTELVDTKGVNL 260


>gi|154250525|ref|YP_001411349.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1]
 gi|154154475|gb|ABS61692.1| SAF domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 317

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 22/228 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                + VL++  D+  G  ++   L      E     G   D           G +   
Sbjct: 70  AAENAVTVLVAARDVVRGQRISEADLGLRRM-EGPAPSGSFADAQSA------IGRVATD 122

Query: 101 PILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-- 157
            I     I  + L  +    G+++L+P+G+RA  + I+    VGG ++  D VDV     
Sbjct: 123 DIRSSQIIFQQALSSEPAAAGIAALVPEGQRAFAIRIAEEDIVGGFLQAGDRVDVFATFP 182

Query: 158 ----------RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--GSTATLELTPMQAK 205
                           +    ++L +++V+A+   +      +     T T+   P    
Sbjct: 183 GAVYGQQGGLGQREGDQSKSALLLQDMQVLAVGPALSHQAGQVNAGARTVTVAAPPNALA 242

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253
            L  A  +  ++L +R+  D   +  E   + D++  G  +  ++A  
Sbjct: 243 RLALAGRLGHITLAIRNPGDREVAPGELVALDDLRPAGAAVAPVEAKS 290


>gi|91775996|ref|YP_545752.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT]
 gi|91709983|gb|ABE49911.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT]
          Length = 299

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 107/282 (37%), Gaps = 42/282 (14%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           + + +  + A ++    +   H    +     PA    +++++ D+  G V+ P  L   
Sbjct: 8   ITAILLFIGAVLVGWYGIRAGHQPEIQAPAPLPAVLYPLVVARQDIPAGHVLLPEDLALE 67

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
                   +    +    +A  +L G +V   I K  PI       RG    + LL  G+
Sbjct: 68  --------ESESQNPLAYSATTDLVGRMVESSIEKNAPILSSHFAQRGPA--AQLLKHGE 117

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVI----AIDHN 182
           R   + +     VGG I+P DHVDV++  + S       +   +L ++RVI    A+  N
Sbjct: 118 RGVAIKVDEVVGVGGFIQPGDHVDVLVYINSSNGMTTDSSAQSILRDVRVISYGDALQQN 177

Query: 183 ID------------------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           +                   S  + L G +A + +       L+ A S   L L LR  +
Sbjct: 178 VSSSNVSPGPASMLADNGSTSKPQALSGHSAVIAVKEEDVSRLMLAASGGTLRLSLRGAS 237

Query: 225 -DLNPSSSEDSDVWDVQEEGKEI------QIIKAGVIVNKDG 259
            D+   SS+   + ++    + +      +++KA       G
Sbjct: 238 PDVAKKSSDLVRLSEITGSQQPVKAPSLPKVVKAAPTKKNAG 279


>gi|269926136|ref|YP_003322759.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789796|gb|ACZ41937.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 258

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 28/254 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++ ++V    A  AG+  +      +V       +   K + V+++  D+A G  +
Sbjct: 3   KRIGILLMIVGLALAAFAGLTVI------NVTRAAREAKPVIKQVQVVVAAQDIAQGSPI 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120
           T ++LE   FP +      +      +++ +         I+KG  I    L D    G 
Sbjct: 57  TASMLETKPFPADFAPSEAV------SSINDAVNRYSATNIVKGQIITRPLLSDTKQVGK 110

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------------RSLSERKPTVT 168
           L+  +PKGK A  +  S   +  G I+P D VDV++             ++  E + T  
Sbjct: 111 LALSIPKGKVAFALPASDLLSGNGQIQPGDRVDVLVTFFVKMTSIGPDGQTSDEERATTQ 170

Query: 169 VVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQ--SVAKLSLVLRSIAD 225
             L ++ V+ +      SD          L + P QA  L  A+    A + L LR  +D
Sbjct: 171 TTLQDLEVLDVLGTGAGSDGGNAKSPAVVLLVDPQQAVTLKLAKDSDKAVIDLALRGSSD 230

Query: 226 LNPSSSEDSDVWDV 239
            +     D +  D 
Sbjct: 231 DHKQHETDGETEDS 244


>gi|186473163|ref|YP_001860505.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
 gi|184195495|gb|ACC73459.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
          Length = 339

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 16/225 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
             EV  +   + I V++ + D+  G  ++ +         + V     DD+ + +A    
Sbjct: 44  RAEVAGKLALRGIEVVVPRRDVPAGTPLSSDAFVSREIAADLV----YDDMVRVDAFDAF 99

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
               +   ++ G P+R            S +LP G+RA T +I   ++   M++P + VD
Sbjct: 100 RKAKLVRAVMHGRPLRTSDFDAPRGRDFSDMLPAGQRALTFEIDAVNSTASMLRPGNRVD 159

Query: 154 VVMVRSL----SERKPTVTVVLSNIRVIAIDHNI------DSDERVLVGS--TATLELTP 201
           +  V +     +  +  V ++L  + V+A   ++      D DE        T T+++  
Sbjct: 160 MYWVGTQAYASAGERKAVRLLLPGVLVLATGRSVNARDAGDVDEPASASRYDTVTMQVPA 219

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246
             A  +V AQ +  L L+LR+ AD +  ++   ++ +    G ++
Sbjct: 220 ADAPRIVLAQKMGTLRLILRNAADDDDIAASPVELTEGDVFGAQL 264


>gi|319791193|ref|YP_004152833.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS]
 gi|315593656|gb|ADU34722.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS]
          Length = 319

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 90/235 (38%), Gaps = 24/235 (10%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
             L +        +  +  ++  +V+++   L  G  V P ++   + P E V +  I  
Sbjct: 36  YYLRASEREIAASLEKDADSQRRDVVVANRALGDGTTVLPTMVAKRSVPNEYVHNDAIT- 94

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143
              P    +  G  + VP+  G P+             +  + +G RA T+ +   S++ 
Sbjct: 95  ---PETFSQFAGRQLSVPVAAGKPLLASFFSAPRKVF-AQEIEQGVRAITIPVDEISSIS 150

Query: 144 GMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIRVIAIDH---------------NIDSD 186
           GM++  D +D + +   S       VV  L ++ V A                  + D+D
Sbjct: 151 GMLRAGDRIDFMYMVEKSAANDPSVVVPLLQDVEVRATGQITSEQFAAMRKRSDVSADTD 210

Query: 187 ERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
                  ST T+ + P  A+ L+ AQ + K+   LR+  D   + +   D  D+ 
Sbjct: 211 PYAQQRYSTVTVAIQPQDAQKLILAQRLGKIIATLRNPEDRA-TMTSGVDAVDLD 264


>gi|317403406|gb|EFV83919.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54]
          Length = 279

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 17/227 (7%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
             + + +  E+    ++ L++  DL  G  +TP  L     P +      I    +P   
Sbjct: 36  RQRVDTLAGEHREAMVSRLVAARDLPAGTELTPAHLAIRDIPAQWAPAASI----EPRDG 91

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGG---LSSLLPKGKRAATMDISISSAVGGMIK 147
             + G  + + + +GDP+    L    +     L++ L  G+RA  + ++    V  +++
Sbjct: 92  DSVLGTRLGLALAQGDPVLSGCLARADSASPPALAARLDPGQRALQVPVADLGTVADLLR 151

Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207
             D VD+ +      R+   T +L  +RV+A+    D+          TL  TP QA   
Sbjct: 152 VGDLVDIYVSFPHRGRE-VTTPLLQGVRVLAV---PDAGGGTGPAQ-VTLAATPNQAMRY 206

Query: 208 VAAQSVAKLSLVLRSIADL-----NPSSSEDSDVWDVQEEGKEIQII 249
           +AA+    L+ ++R+ AD      +P     S +    E  +E  ++
Sbjct: 207 LAARRAGTLTGLVRNRADTARIPEDPPRDLASLIGLAPEAPREPAVV 253


>gi|167824271|ref|ZP_02455742.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei 9]
          Length = 192

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMI 146
               +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I
Sbjct: 28  EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 87

Query: 147 KPNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVG 192
           +P D+VDV++ + L          +R      + + +RV+A+         D+ +     
Sbjct: 88  EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 147

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA--DLNPSSSEDSD 235
            T T E++   A+ +     +  LSL LRS A  D     +  ++
Sbjct: 148 RTVTFEVSSRDAQVITVGAHLGALSLALRSFATSDRGAVGTAPAE 192


>gi|311105391|ref|YP_003978244.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8]
 gi|310760080|gb|ADP15529.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8]
          Length = 284

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVI-TENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
             AL+AG+++   V  H  Q  + +  E     ++ L++  DL  G  +    L     P
Sbjct: 19  AIALIAGLVSAWAVREHVQQRVQALEAEARTPMVSRLVAAYDLPAGTQLEELHLAVREIP 78

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRA 131
           E       ID    P  +  L G  +   +  G+P+    L        L+S L  G+RA
Sbjct: 79  EPWASRASID----PLDLSGLLGATLLADVANGEPLLRGHLTFTAPVPALASRLRSGQRA 134

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV 191
            T+  +    +  +++  D +D+ +  +  +++ TV  +L  +RV+ +    D + +   
Sbjct: 135 LTVAATDLGGLAEVLRVGDAIDIYVSFAHRQQELTV-PLLQGMRVLMVGGEADGENK--- 190

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           G   TL  TP +A   VAA+    L+ +LR   D    S    
Sbjct: 191 GGNITLAATPDEAMRFVAARQSGVLTAMLRHRDDAAVVSGAAQ 233


>gi|167911034|ref|ZP_02498125.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei 112]
          Length = 210

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 15/152 (9%)

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMI 146
               +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I
Sbjct: 28  EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 87

Query: 147 KPNDHVDVVMVRSLSERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVG 192
           +P D+VDV++ + L+    T            + + +RV+A+         D+ +     
Sbjct: 88  EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 147

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            T T E++   A+ +     +  LSL LRS A
Sbjct: 148 RTVTFEVSSRDAQVITVGAHLGALSLALRSFA 179


>gi|257791505|ref|YP_003182111.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|257475402|gb|ACV55722.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
          Length = 243

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 20/229 (8%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R + +V +   A+    +    ++  +VQ+E             +I+   ++ G  ++
Sbjct: 33  SARKLSLVTAASVAIAVIAVVYAFLTSSNVQSEIATLRENTSST--VITTTAISQGTTIS 90

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GL 121
           P++L+ V  P   +    I D       Q+L G +    I     +    L    N   L
Sbjct: 91  PDMLKVVDIPASFLNSEAIADT------QDLVGKIALYNIAANSQVTSGMLSAMDNAATL 144

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           +S L  G  A ++ +   S + G+IK ND+VD++             V++ N+RV A+D 
Sbjct: 145 ASSLQAGNVAISIAVDSESGLSGLIKQNDYVDIL---------GNGEVIVQNVRVAALDS 195

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+     V   +T TLE+ P QA A+  AQS   L  VLR   +     
Sbjct: 196 NLS--GSVSQYATVTLEVAPTQATAIQEAQSENPLRFVLRPAVERTAPG 242


>gi|167845817|ref|ZP_02471325.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei B7210]
          Length = 181

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMI 146
               +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I
Sbjct: 18  EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 77

Query: 147 KPNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVG 192
           +P D+VDV++ + L          +R      + + +RV+A+         D+ +     
Sbjct: 78  EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 137

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA--DLNPSSSEDS 234
            T T E++   A+ +     +  LSL LRS A  D     +  +
Sbjct: 138 RTVTFEVSSRDAQVITVGAHLGALSLALRSFATSDRGAVGTAPA 181


>gi|161524906|ref|YP_001579918.1| Flp pilus assembly protein CpaB [Burkholderia multivorans ATCC
           17616]
 gi|189350344|ref|YP_001945972.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342335|gb|ABX15421.1| Flp pilus assembly protein CpaB [Burkholderia multivorans ATCC
           17616]
 gi|189334366|dbj|BAG43436.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 313

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 98/246 (39%), Gaps = 35/246 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K+   + I ++ +  + A ++     +PH    +  +  NP   ++V+++   L VG  +
Sbjct: 7   KIIAGLLIAIAVLLGIYAWMLGR--STPHPAPVQPTVAANP---VSVVVATRTLPVGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+    P  +V  G   D         L G +    I    P+  + LV     GL
Sbjct: 62  AADALKVQ--PIASVPAGAFADPAV------LVGRVPARDIPASAPVVSDALVS----GL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLSN 173
           +  +  G+RA  + +  ++AVG  ++P + VDV +               +    +++S 
Sbjct: 110 AEDVQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGNSMLDGEVSQTQARLLMSK 169

Query: 174 IRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           +RV++                S+ +      A L +   Q  AL   +S  +L+L LR+ 
Sbjct: 170 VRVLSFGDATPDRDSGNNTNGSNGQPSGVRIAVLAVPTAQVDALTLGESSGRLTLALRNP 229

Query: 224 ADLNPS 229
            D   +
Sbjct: 230 RDDELA 235


>gi|239817411|ref|YP_002946321.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
 gi|239803988|gb|ACS21055.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
          Length = 331

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 93/285 (32%), Gaps = 38/285 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE-------EVITENPAKFINVLISKG 53
           M     +   +  + A+  G  A  L      +T        E      A    V+++  
Sbjct: 1   MINLTKIVAAILVLLAIALGGYAWMLGRQAPAKTAVTATAPSEQPQSQQAPTYPVVVAAK 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
            L  G  +  + L            G   +V          G +  + + +G P+   +L
Sbjct: 61  PLPAGQAIPADALRVERLTVN--PAGAFQEVATA------TGRVPVIDLSEGSPLMDNQL 112

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVV 170
           V     GL+  + +G+RA  +       VG  I+P D VDV +          +    ++
Sbjct: 113 VS----GLALRVGEGERAVAIKADEIMGVGNKIQPGDFVDVFITLKSDGKDVDRSQARLL 168

Query: 171 LSNIRVIA-------------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
           LS  RV+A              D      +R     TA L ++      L    +  +L 
Sbjct: 169 LSRKRVLAFGSASVDGLPSKTTDKQQQQAQRTEAPRTAVLAVSVDDVNRLTIGDATGRLM 228

Query: 218 LVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGI 262
           L LR+  D+     +   ++       +   ++ G       EG+
Sbjct: 229 LALRNPNDVAEPDPK---LFADLPTALQPASVRPGEPRRASLEGL 270


>gi|296158793|ref|ZP_06841622.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
 gi|295890998|gb|EFG70787.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
          Length = 316

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 28/243 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     +   V    ALV G+ A  L           +T        V+++   LA G  
Sbjct: 1   MPNLTRIFAGVLIAVALVLGLFAWTLSRR---PAPVAVTPATHASFPVVVATRALAPGKP 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + L   + P     +G   +  Q      L G +    I    P+   +L    + G
Sbjct: 58  ITVDDLRIQSLPIN--PNGAFTEPAQ------LAGRVPNAEIGADSPVLESQL----SSG 105

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVL 171
           L+  +  G+RA  + +   +AVG  ++P + VDV                  +    +++
Sbjct: 106 LAERVEAGERALAVRVDEGNAVGNRLRPGNFVDVFFTLKRDGGSMGNGGEIDRTQARLLM 165

Query: 172 SNIRVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           S +RV+A  +   S +       +  TA L +       L  A+S  +L   LR+  D  
Sbjct: 166 SKVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADVDRLTLAESAGRLIFALRNPKDTE 225

Query: 228 PSS 230
              
Sbjct: 226 VVD 228


>gi|187923644|ref|YP_001895286.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
 gi|187714838|gb|ACD16062.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
          Length = 316

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 24/228 (10%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +++GV   VA ++ +   S         +T        V+++   L  G  +T + +   
Sbjct: 7   ILAGVLIAVALVLGLFAWSLSRRPALVAVTPATQASFRVVVATHTLPAGKAITVDDVRVQ 66

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
           + P     +G   D  Q      L G +    I    P+   +L    + GL+  +  G+
Sbjct: 67  SLPIN--PNGAFTDPAQ------LAGRVPNAEIGAESPVLESQL----SSGLAERVEPGE 114

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLSNIRVIAIDH 181
           RA  + +   +AV   ++P + VDV                 +    +++S +RV+A  +
Sbjct: 115 RALAVRVDEGNAVANRLRPGNFVDVFFTLKRDASIGNGGEIDRTQARLLMSKVRVLAFGN 174

Query: 182 NIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
              S +       +  TA L +       L  A+S  +L   LR+  D
Sbjct: 175 ATASGDSAGDPNGMVRTAVLAVPVADIDRLTLAESAGRLIFALRNPKD 222


>gi|76810330|ref|YP_333339.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei
           1710b]
 gi|76579783|gb|ABA49258.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           1710b]
          Length = 348

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 27/265 (10%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 61  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 120

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I    P+   +L+     GL+  +  G+R
Sbjct: 121 TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 168

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 169 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 228

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
             ++ D           TA L +   Q  AL  A++  +L L LRS  D + + ++   +
Sbjct: 229 ATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIA-AQTVAI 287

Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261
                 G   Q     V+    G G
Sbjct: 288 RAPAGAGPSNQAATGLVLSELSGSG 312


>gi|323341956|ref|ZP_08082189.1| flp pilus assembly CpaB [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464381|gb|EFY09574.1| flp pilus assembly CpaB [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 269

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 106/265 (40%), Gaps = 58/265 (21%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ +VV+      AG+  + L++P     +E+  ++      V+++   L     
Sbjct: 1   MDKNKLISVVVA------AGVFLLALMNPIQGLKKEIPKKD---LTQVVVALKPLTAQTR 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGN 118
           +T +++E     ++   +G   D       + + G +    +  GD    EK+  V +G+
Sbjct: 52  ITQDMIEVKNVHKDAAPEGAFADA------ERVVGKVTTTKMSVGDMFTGEKVEVVGQGS 105

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------ 166
            GLS++L    RA T+ +     + G+I+  + +D++ V      + T            
Sbjct: 106 SGLSTVLTDNMRAYTVKLEGQYGMQGLIRVGNKIDIITVLDSDLPEDTLQKYDYLKKNYP 165

Query: 167 --------------------------VTVVLSNIRVIAIDHNIDSDERVL---VGSTATL 197
                                       ++L N  V+AID +   D++ +   + +T TL
Sbjct: 166 QLYAGSVETAVDGKERIPVLGLKEKKAVLLLQNKEVLAIDQDTLPDDKKVADKMYTTVTL 225

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRS 222
            ++   A  L  ++SV     +LRS
Sbjct: 226 AVSAEDALKLAVSESVGTNRAILRS 250


>gi|39936739|ref|NP_949015.1| hypothetical protein RPA3677 [Rhodopseudomonas palustris CGA009]
 gi|192292565|ref|YP_001993170.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
 gi|39650595|emb|CAE29118.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192286314|gb|ACF02695.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
          Length = 193

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 6/145 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R+    V    A+ AG +A  L S    Q         A+ + VL++K D+ +G  
Sbjct: 7   MNPARI----VVLTIAVGAGGVAAYLASSTGPQ-PGAPAAPVAQTVEVLVAKNDIPLGQA 61

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119
           VTP  L+W  +P       FI     P A  ++ G + R P + G+PIR +KLV   G+ 
Sbjct: 62  VTPGDLQWQTWPAATASSNFIRRDLHPGATTDIGGSITRAPFIAGEPIRRQKLVQADGSS 121

Query: 120 GLSSLLPKGKRAATMDISISSAVGG 144
            + + +P G RA + + ++     G
Sbjct: 122 SVPAFVPTGMRAISTETALEPGATG 146


>gi|167815899|ref|ZP_02447579.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei 91]
          Length = 166

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 15/152 (9%)

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMI 146
               +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I
Sbjct: 4   EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 63

Query: 147 KPNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVG 192
           +P D+VDV++ + L          +R      + + +RV+A+         D+ +     
Sbjct: 64  EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 123

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            T T E++   A+ +     +  LSL LRS A
Sbjct: 124 RTVTFEVSSRDAQVITVGAHLGALSLALRSFA 155


>gi|167620225|ref|ZP_02388856.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           Bt4]
          Length = 266

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I+   P+   +L+     GL+  +  G+R
Sbjct: 72  TPAPIA--GAFPNPTL------VTGRIPANDIVAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              D D           TA L +   Q  AL  A++  +L L LRS  D + ++
Sbjct: 180 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVAT 233


>gi|296122068|ref|YP_003629846.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
 gi|296014408|gb|ADG67647.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
          Length = 334

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 14/222 (6%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + RL   +++ V   V G++ +  +    +  EE   +      NV ++  D+  G ++T
Sbjct: 1   MRRLTPALLTLVMFGVVGLLVVAYIGKSLLAREE--KKPVIATRNVPMAISDIEPGTLIT 58

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              +         +    +       A + + G + R  I   +PIR  +L   G     
Sbjct: 59  EGHIGLGPVQNSQLKPDMLL------ANRVIVGRVARTKIRAAEPIRAGQLYQPGEL-PD 111

Query: 123 SLLPKGKRAATMDISISSA-VGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVI 177
             +  G RA ++ ++     V GMIKP ++VDV+           +      +   ++VI
Sbjct: 112 LRVADGMRAVSISVAEMVGIVDGMIKPGNYVDVLFTVESQSNADLQGGVTMRLFEGVKVI 171

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           AI+ +          +  TLELT  QA  +  A++   L+L+
Sbjct: 172 AINRSFTQSRVERGVNRVTLELTQAQANIITLAEAKGALTLI 213


>gi|91783010|ref|YP_558216.1| putative signal peptide protein, CpaB like [Burkholderia xenovorans
           LB400]
 gi|91686964|gb|ABE30164.1| Putative signal peptide protein, CpaB like protein [Burkholderia
           xenovorans LB400]
          Length = 316

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 28/243 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     +   V    ALV G+ A  L           +T        V+++   LA G  
Sbjct: 1   MPNLTRIFAGVLIAVALVLGLFAWTLSRR---PAPVAVTPAVHASFPVVVATRALAPGKP 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + L   + P     +G   +  Q      L G +    I    P+   +L    + G
Sbjct: 58  ITVDDLRIQSLPIN--PNGAFTEPAQ------LAGRVPNAEIGADSPVLESQL----SSG 105

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVL 171
           L+  +  G+RA  + +   +AVG  ++P + VDV                  +    +++
Sbjct: 106 LAERVEVGERALAVRVDEGNAVGNRLRPGNFVDVFFTLKRDGGSMGNGGEIDRTQARLLM 165

Query: 172 SNIRVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           S +RV+A  +   S +       +  TA L +       L  A+S  +L   LR+  D  
Sbjct: 166 SKVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADVDRLTLAESAGRLIFALRNPKDTE 225

Query: 228 PSS 230
              
Sbjct: 226 VVD 228


>gi|170696787|ref|ZP_02887896.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
 gi|170138303|gb|EDT06522.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
          Length = 318

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 28/245 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KLTR++   +  V AL+ G+ A+ L+          + +       V+++   L  G  
Sbjct: 7   LKLTRIVAGALIAV-ALLLGVFAVMLLRRPAPAPVASVKQT---VFPVVVATRVLPAGKP 62

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + L     P     +G   D         + G +    I    P+  E+L    + G
Sbjct: 63  IGADALRVQPLPIN--PNGAFADPSL------VAGRVPAADIGADSPVLEEQL----SSG 110

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172
           L+  +  G+RA  + +  S+AVG  ++P + VDV                 +    +++S
Sbjct: 111 LAERIEPGERAVAVRVEESNAVGNRLRPGNFVDVFFTLKRDGNMGSGGEIERTQARLLMS 170

Query: 173 NIRVIAIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
            +RV+A  +       S +   +  TA L +       L  A+S  +L   LR+  D   
Sbjct: 171 KVRVLAFGNATAAGDTSGDPNGMVRTAVLAVPVADVDRLTLAESSGRLVFALRNPKDAEI 230

Query: 229 SSSED 233
             +  
Sbjct: 231 IDAAA 235


>gi|126439530|ref|YP_001058806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|126219023|gb|ABN82529.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
          Length = 299

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 27/265 (10%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I    P+   +L+     GL+  +  G+R
Sbjct: 72  APTPI--AGAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
             +D D           TA L +   Q  AL  A++  +L L LRS  D + + ++   +
Sbjct: 180 ATVDRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIA-AQTVAI 238

Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261
                 G   Q     V+    G G
Sbjct: 239 RAPAGAGPSNQAATGLVLSELSGSG 263


>gi|87308905|ref|ZP_01091043.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645]
 gi|87288248|gb|EAQ80144.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645]
          Length = 299

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 109/266 (40%), Gaps = 22/266 (8%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI--SKGDLAVGMVVTPNILEW 68
           + GV A++ G+++  +V  + ++    + E  A     ++  +  +L  G  +T   +  
Sbjct: 1   MLGVVAVMFGLLSAYVVRKNMMKETPPVVETTAPPKTFVVPKAAVNLPAGRTLTLGDVVI 60

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPK 127
             + E+ + +  +   +  NA Q + G  +R  + +      +     G G G+   L  
Sbjct: 61  YQYTEKQLEEQPLPTGYMVNATQ-IIGRTLRQELTEKSVFTPDMFYPEGTGPGIVQNLGA 119

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNI- 183
           G+RA T+ I    AV G  +P   VDV+        +E   T   +L +++V+A D +  
Sbjct: 120 GQRAFTVRIEYDEAVEGFARPGTKVDVLFRAEADPENELAETTVTLLQDVKVLAFDSSPS 179

Query: 184 ---------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL----NPSS 230
                        R+   +T TL + P +A  L  A      +L L  +       N + 
Sbjct: 180 ALHPIVNEQSQRLRMREYATVTLAVLPHEATKLQVADDHGTFALALVPLDGEVVSYNGAP 239

Query: 231 SEDSDVWDVQEEGKE-IQIIKAGVIV 255
              +++ D +   ++ +++ + G I 
Sbjct: 240 RTLAELLDRRPPLRQMMRVYRGGQIS 265


>gi|187251613|ref|YP_001876095.1| pilus assembly protein [Elusimicrobium minutum Pei191]
 gi|186971773|gb|ACC98758.1| Pilus assembly protein [Elusimicrobium minutum Pei191]
          Length = 253

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 104/255 (40%), Gaps = 28/255 (10%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
           G+ +  V A++A ++   ++  +  + EE      +K   V+I+  DL    V+T   L 
Sbjct: 4   GVFLPLVIAILAAVVYFIILFSNQSKFEE-----NSKLERVVIAIRDLPERKVITKGDLG 58

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLP 126
            +  P + +           +  +  + ++ R+ I KG+ +    L       GLS+ + 
Sbjct: 59  VIEMPNKFLQKDAFTVTRDSDITKLENNLVTRIAIPKGNQVSKAALTSLSPEAGLSARVS 118

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-----SERKPTVTVVLSNIRVIAIDH 181
              R   +   + S+V  +IKP+D VDV++          +++     +L  I+V+ + +
Sbjct: 119 PLWRGF-VLTDVPSSVANLIKPDDWVDVLLTFDAYMKNTGQKEKITATILQRIKVLGVGN 177

Query: 182 NIDSD----------ERVLVG------STATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           ++             ER          S  +L L P  A+ L  A+    ++LV+R   D
Sbjct: 178 DLGQGMDANQLRATREREASASAFNDSSAISLALHPRDAQYLALAKEEGIITLVVRRRED 237

Query: 226 LNPSSSEDSDVWDVQ 240
               S   + + ++ 
Sbjct: 238 QGVHSIAIASLTEMF 252


>gi|53719510|ref|YP_108496.1| putative membrane fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|126451660|ref|YP_001066057.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|134282337|ref|ZP_01769042.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|167902900|ref|ZP_02490105.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           NCTC 13177]
 gi|167911137|ref|ZP_02498228.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           112]
 gi|167919160|ref|ZP_02506251.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           BCC215]
 gi|217423802|ref|ZP_03455303.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|226199689|ref|ZP_03795242.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812066|ref|YP_002896517.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242315361|ref|ZP_04814377.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254179958|ref|ZP_04886557.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|254188632|ref|ZP_04895143.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197581|ref|ZP_04904003.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|254259533|ref|ZP_04950587.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
 gi|52209924|emb|CAH35896.1| putative membrane fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|126225302|gb|ABN88842.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|134246375|gb|EBA46464.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|157936311|gb|EDO91981.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169654322|gb|EDS87015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|184210498|gb|EDU07541.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|217393660|gb|EEC33681.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|225928275|gb|EEH24309.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237503330|gb|ACQ95648.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242138600|gb|EES25002.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254218222|gb|EET07606.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 27/265 (10%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I    P+   +L+     GL+  +  G+R
Sbjct: 72  TPTPI--AGAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
             ++ D           TA L +   Q  AL  A++  +L L LRS  D + + ++   +
Sbjct: 180 ATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIA-AQTVAI 238

Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261
                 G   Q     V+    G G
Sbjct: 239 RAPAGAGPSNQAATGLVLSELSGSG 263


>gi|172060494|ref|YP_001808146.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
 gi|171993011|gb|ACB63930.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
          Length = 311

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 33/242 (13%)

Query: 10  VVSGVFALVAGIIAMR--LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
           +++G+   +A ++ +   ++     Q   V     A  + V+++   L VG  +  + L+
Sbjct: 8   IIAGLLIAIAVLLGIYAWMLGRSASQPAPVQQVIAASPVPVVVATRALPVGQPIAADALK 67

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
               P   V  G   D         L G +    I    P+  + LV     GL+  +  
Sbjct: 68  VQ--PIAPVPTGAFADPAI------LVGRVPARDIPASAPVVSDSLVS----GLAEDVQP 115

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---------VTVVLSNIRVIA 178
           G+RA  + +  ++AVG  ++P + VDV +        P            +++S +RV++
Sbjct: 116 GERAIAIRVDETNAVGNRLRPGNFVDVFVNLKREASGPMLDGEVSQTQARLLMSKVRVLS 175

Query: 179 IDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
                           ++ +      A L +   Q  AL   +S  +L+L LR+  D   
Sbjct: 176 FGDATPERDSGSNTNGNNGQPSSARIAVLAVPTAQVDALTLGESSGRLTLALRNPRDDEL 235

Query: 229 SS 230
           ++
Sbjct: 236 AT 237


>gi|319795778|ref|YP_004157418.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS]
 gi|315598241|gb|ADU39307.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS]
          Length = 327

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 84/252 (33%), Gaps = 33/252 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-------FINVLISKG 53
           M     +   +  + A+  G  A  L            T N A           V+++  
Sbjct: 1   MINLTKIIAAILVLLAIALGGYAWMLSRQAPAPRPIATTPNTASAKTQQAVTYPVVVAAK 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
            L  G ++  + L            G   D           G +  + + +G P+   +L
Sbjct: 61  ALPAGQIIPADALRVERLTIN--PSGAFQDTAVA------TGRVPVLDLGEGTPLLEGQL 112

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVV 170
           V     GL+  + +G+RA  +       VG  ++P D VDV ++         +    ++
Sbjct: 113 VS----GLALKIAEGERAVAVKADEVMGVGNKVQPGDFVDVFILLKSDGKDVDRSQARLL 168

Query: 171 LSNIRVIAIDHNI-----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           LS  RV+A  +                +R     TA L +       L  A+S  +L L 
Sbjct: 169 LSRKRVLAFGNASVDGLTSKTADKQQPQRAEPARTAVLAVPVDDINRLTLAESSGRLLLA 228

Query: 220 LRSIADLNPSSS 231
           LR+  D+     
Sbjct: 229 LRNPTDMQEPDP 240


>gi|33596968|ref|NP_884611.1| hypothetical protein BPP2375 [Bordetella parapertussis 12822]
 gi|33566419|emb|CAE37672.1| putative membrane protein [Bordetella parapertussis]
          Length = 313

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 37/260 (14%)

Query: 21  IIAMRLVSPHHVQTEEVITENPA---KFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
             A  L +       + + +  +       V+++   +A G  +   +L+   +P     
Sbjct: 21  YAAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAAELLKIERWP----- 75

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
              +   +     + L G +VR  I  G+P+    L      GL+  L  G+RA T+ + 
Sbjct: 76  ---VQPANGYAESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVD 128

Query: 138 ISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHN------------- 182
             S     I P D VDV +V  R +        ++ S I+V+A                 
Sbjct: 129 ELSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPS 188

Query: 183 -IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
                +       A L +   +   L+ A    +L LVLRS  D++           +  
Sbjct: 189 VAQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDVDVPD------LALFP 242

Query: 242 EGKEIQIIKAGVIVNKDGEG 261
           E   +  ++AG+   +  +G
Sbjct: 243 ERAPVLALRAGLTAEQQRDG 262


>gi|163857692|ref|YP_001631990.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
 gi|163261420|emb|CAP43722.1| putative Flp pilus assembly protein [Bordetella petrii]
          Length = 320

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 33/228 (14%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V+++  D+  G  +   +L+   +P        I   H     ++L G + R+ I  
Sbjct: 54  TYPVVLAAKDIQAGTRLDAGMLKVQQWP--------IPLAHGYAKPEDLAGQVARLDIAG 105

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-- 162
           G+PI  + L      GL+  L  G+RA  + +      G  I P D VDV          
Sbjct: 106 GEPITNQSLAQ----GLAQQLRDGERAVAVPVDEIVGAGNRITPGDLVDVFFALEKDNEV 161

Query: 163 RKPTVTVVLSNIRVIAIDHN-------------IDSDERVLVGSTATLELTPMQAKALVA 209
           +   V ++ S +RV+A                 +          +A L +   +   L+ 
Sbjct: 162 KGSQVRLLQSRVRVLAYGAQSIDGPPVASDKPVVQRGASPAPARSALLAVPVERVNELLL 221

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           A     L L LR+ +D            D+    + +   +AG+   +
Sbjct: 222 ASRSGHLQLALRAPSDEALPD------RDLFVPREAVISARAGLTAEQ 263


>gi|33593024|ref|NP_880668.1| hypothetical protein BP1995 [Bordetella pertussis Tohama I]
 gi|33563399|emb|CAE42275.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332382436|gb|AEE67283.1| hypothetical protein BPTD_1965 [Bordetella pertussis CS]
          Length = 313

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 37/260 (14%)

Query: 21  IIAMRLVSPHHVQTEEVITENPA---KFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
             A  L +       + + +  +       V+++   +A G  +  ++L+   +P     
Sbjct: 21  YAAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAADLLKIERWP----- 75

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
              +   +     + L G +VR  I  G+P+    L      GL+  L  G+RA T+ + 
Sbjct: 76  ---VQPANGYAESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVD 128

Query: 138 ISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHN------------- 182
             S     I P D VDV +V  R +        ++ S I+V+A                 
Sbjct: 129 ELSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPS 188

Query: 183 -IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
                +       A L +   +   L+ A    +L LVLRS  D++           +  
Sbjct: 189 VAQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDIDVPD------LALFP 242

Query: 242 EGKEIQIIKAGVIVNKDGEG 261
           E   +  ++AG+   +  +G
Sbjct: 243 ERAPVLALRAGLTAEQQRDG 262


>gi|53723521|ref|YP_102955.1| hypothetical protein BMA1291 [Burkholderia mallei ATCC 23344]
 gi|67641295|ref|ZP_00440076.1| Flp pilus assembly protein CpaB [Burkholderia mallei GB8 horse 4]
 gi|121600825|ref|YP_993099.1| hypothetical protein BMASAVP1_A1779 [Burkholderia mallei SAVP1]
 gi|124385109|ref|YP_001026124.1| hypothetical protein BMA10229_A0116 [Burkholderia mallei NCTC
           10229]
 gi|126449256|ref|YP_001080604.1| putative pilus assembly protein CpaB [Burkholderia mallei NCTC
           10247]
 gi|167002483|ref|ZP_02268273.1| putative pilus assembly protein CpaB [Burkholderia mallei PRL-20]
 gi|254177688|ref|ZP_04884343.1| putative pilus assembly protein CpaB [Burkholderia mallei ATCC
           10399]
 gi|254199897|ref|ZP_04906263.1| putative pilus assembly protein CpaB [Burkholderia mallei FMH]
 gi|254206229|ref|ZP_04912581.1| putative pilus assembly protein CpaB [Burkholderia mallei JHU]
 gi|254358354|ref|ZP_04974627.1| putative pilus assembly protein CpaB [Burkholderia mallei
           2002721280]
 gi|52426944|gb|AAU47537.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|121229635|gb|ABM52153.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|126242126|gb|ABO05219.1| putative pilus assembly protein CpaB [Burkholderia mallei NCTC
           10247]
 gi|147749493|gb|EDK56567.1| putative pilus assembly protein CpaB [Burkholderia mallei FMH]
 gi|147753672|gb|EDK60737.1| putative pilus assembly protein CpaB [Burkholderia mallei JHU]
 gi|148027481|gb|EDK85502.1| putative pilus assembly protein CpaB [Burkholderia mallei
           2002721280]
 gi|160698727|gb|EDP88697.1| putative pilus assembly protein CpaB [Burkholderia mallei ATCC
           10399]
 gi|238522204|gb|EEP85650.1| Flp pilus assembly protein CpaB [Burkholderia mallei GB8 horse 4]
 gi|243061823|gb|EES44009.1| putative pilus assembly protein CpaB [Burkholderia mallei PRL-20]
          Length = 299

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 95/265 (35%), Gaps = 27/265 (10%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I    P+   +L+     GL+  +  G+R
Sbjct: 72  TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
             ++ D           TA L +   Q  AL  A++  +L   LRS  D + + ++   +
Sbjct: 180 ATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVFALRSPRDEDIA-AQTVAI 238

Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261
                 G   Q     V+    G G
Sbjct: 239 RAPAGAGPSNQAATGLVLSELSGSG 263


>gi|257139290|ref|ZP_05587552.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
          Length = 303

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I+   P+   +L+     GL+  +  G+R
Sbjct: 72  TPAPIA--GAFPNPTL------VTGRIPANDIVAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              D D           TA L +   Q  AL  A++  +L L LRS  D + ++
Sbjct: 180 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVAT 233


>gi|33600810|ref|NP_888370.1| hypothetical protein BB1825 [Bordetella bronchiseptica RB50]
 gi|33568410|emb|CAE32322.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 313

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 87/240 (36%), Gaps = 34/240 (14%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
                     V+++   +A G  +  ++L+   +P        +   +     + L G +
Sbjct: 41  RASAALPTYPVVVAGKPIAAGDRLAADLLKIERWP--------VQPANGYAESEALLGQM 92

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           VR  I  G+P+    L      GL+  L  G+RA T+ +   S     I P D VDV +V
Sbjct: 93  VRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVDELSGAQNRILPGDLVDVFVV 148

Query: 158 --RSLSERKPTVTVVLSNIRVIAIDHN--------------IDSDERVLVGSTATLELTP 201
             R +        ++ S I+V+A                      +       A L +  
Sbjct: 149 MDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRNAMLAVPV 208

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
            +   L+ A    +L LVLRS  D++           +  E   +  ++AG+   +  +G
Sbjct: 209 ERVNELLLAAKAGRLQLVLRSPEDVDVPD------LALFPERAPVLALRAGLTAEQQRDG 262


>gi|221213140|ref|ZP_03586116.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD1]
 gi|221167353|gb|EED99823.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD1]
          Length = 309

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 30/245 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       I    +   V   I   ++     +   V     A  + ++I+   L  G  
Sbjct: 1   MTNNLTKIIAGLLIAIAVLLGIYAWMLGRSTPRPAPVQQTIAASPVPIVIATRTLPAGQP 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + L+    P   V  G   D         L G +    I    P+  + LV     G
Sbjct: 61  IAADALKIQ--PTSPVPAGAFADAST------LVGRVPARDIPASSPVVSDALVS----G 108

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172
           L+  +  G+RA  + +  ++AVG  ++P + VDV +               +    +++S
Sbjct: 109 LAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREGNAMLDGEVSQTQARLLMS 168

Query: 173 NIRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV+A                S+ +      A L +   Q  AL   ++  +L+L LR+
Sbjct: 169 KVRVLAFGDATPERDSGSNTNGSNAQPSNVRIAVLAVPTAQVDALTLGEASGRLTLALRN 228

Query: 223 IADLN 227
             D  
Sbjct: 229 PRDDE 233


>gi|221197780|ref|ZP_03570826.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2M]
 gi|221204662|ref|ZP_03577679.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2]
 gi|221175519|gb|EEE07949.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2]
 gi|221181712|gb|EEE14113.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2M]
          Length = 309

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 30/245 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       I    +   V   I   ++     +   V     A  + ++I+   L  G  
Sbjct: 1   MTNNLTKIIAGLLIAIAVLLGIYAWMLGRSTPRPAPVQQTIAASPVPIVIATRTLPAGQP 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + L+    P   V  G   D         L G +    I    P+  + LV     G
Sbjct: 61  IAADALKIQ--PTSPVPAGAFADAST------LVGRVPARDIPASSPVVSDALVS----G 108

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172
           L+  +  G+RA  + +  ++AVG  ++P + VDV +               +    +++S
Sbjct: 109 LAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREGNAMLDGEVSQTQARLLMS 168

Query: 173 NIRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV+A                S+ +      A L +   Q  AL   ++  +L+L LR+
Sbjct: 169 KVRVLAFGDATPERDSGSNTNGSNAQPSNVRIAVLAVPTAQVDALTLGEASGRLTLALRN 228

Query: 223 IADLN 227
             D  
Sbjct: 229 PRDDE 233


>gi|330816714|ref|YP_004360419.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3]
 gi|327369107|gb|AEA60463.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3]
          Length = 305

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 31/249 (12%)

Query: 1   MKLTRLMGIVVSGV-FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M       + V+ +  AL+ GI A  L               PAK   V+++   L  G 
Sbjct: 1   MANNLTKILAVALIAIALLLGIFAWVLGRKPAPVVNNAQQATPAKLFPVVVAARPLKGGQ 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +  + L+        + +G   D  Q      + G +    + +   +    L    + 
Sbjct: 61  PIPADGLKVQQ--AAALPEGAFADPVQ------IVGRVPIADVPEQAAVLESSL----SS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV------------ 167
           G++  +  G+RA  + +  ++AVG  ++P + VDV +         T             
Sbjct: 109 GVADQIAPGERAIAVKVDETNAVGNKVRPGNFVDVFLNLKKDSAAGTTLAGNGGSEVPKT 168

Query: 168 --TVVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLR 221
              ++LS IRVIA      + +          TA L +   Q  AL   ++   L+L LR
Sbjct: 169 QAKLLLSRIRVIAFGDATTARDSSGGALNGVRTAVLAVPAAQVDALTLGEASGSLTLALR 228

Query: 222 SIADLNPSS 230
           +  D   ++
Sbjct: 229 NPRDEEVAT 237


>gi|148657460|ref|YP_001277665.1| SAF domain-containing protein [Roseiflexus sp. RS-1]
 gi|148569570|gb|ABQ91715.1| SAF domain [Roseiflexus sp. RS-1]
          Length = 260

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 90/258 (34%), Gaps = 26/258 (10%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE-------VITENPAKFINVLISKGD 54
           + +  + + +  + A+ AG +   ++    V   E                I + ++   
Sbjct: 3   RRSGWILLTLGVLLAIGAGALVYVVLQQQSVAAAEQARREVLAQQAPQVPTIKLPVAARS 62

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
           L  G  + P+ +    FP + V    + +  Q      ++  ++   + +GDP +    V
Sbjct: 63  LTPGNAIGPDDILLKDFPVDLVPVNALTETTQ------IESRVLARAVGQGDPFQRSMFV 116

Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----------RSLSER 163
                 +S  +P G       I        +I+  D +D+ +                  
Sbjct: 117 GERGESVSQEIPPGYVLFAFPIVDLLGQSNLIEDGDRIDLYLTLNTPLDASAAPAPDQAT 176

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL-ELTPMQAKALVAAQSV-AKLSLVLR 221
            PT  + L N++V+ +      +      +TA L  + P  A  L   +     +   LR
Sbjct: 177 APTTALTLQNVQVLKVLRQAPREGETKTPATALLCAMRPEDAIILKHIKDTGGTIDFALR 236

Query: 222 SIADLNPSSSEDSDVWDV 239
           S  D  P ++E  ++ ++
Sbjct: 237 SPLDTEPFTTEPLNLPEL 254


>gi|254297794|ref|ZP_04965247.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
 gi|157806884|gb|EDO84054.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
          Length = 299

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 95/265 (35%), Gaps = 27/265 (10%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                     V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMAPVVVAARALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I    P+   +L+     GL+  +  G+R
Sbjct: 72  TPTPI--AGAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
             ++ D           TA L +   Q  AL  A++  +L L LRS  D + + ++   +
Sbjct: 180 ATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIA-AQTVAI 238

Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261
                 G   Q     V+    G G
Sbjct: 239 RAPAGAGPSNQAATGLVLSELSGSG 263


>gi|307730007|ref|YP_003907231.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
 gi|307584542|gb|ADN57940.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
          Length = 317

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 27/235 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    AL+ G+IA+ L+          + ++      V+++   L  G  +  + L    
Sbjct: 11  LLIAVALLLGVIAVTLLRRPAPAPVTSVRQS---LFPVVVAARLLPAGKPIAADALRVQP 67

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P     +G   +         + G +    I    P+  E+L    + GL+  +  G+R
Sbjct: 68  LPIH--PNGAFAEPSL------VAGRVPAADIGAEAPVLEEQL----SSGLAERIEPGER 115

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLSNIRVIAIDHN 182
           A  + +  S+AVG  ++P + VDV                 +    +++S +RV+A  + 
Sbjct: 116 AVAVRVEESNAVGNRLRPGNFVDVFFTLKRDGNMGSGGEIGQTQARLLMSKLRVLAFGNA 175

Query: 183 I----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
                 S ++  +  TA L +       L  A+S  +L   LR+  D     +  
Sbjct: 176 TATGDTSGDQNGMVRTAVLAVPVADVDRLTLAESSGRLVFALRNPKDPEVIDASA 230


>gi|170701751|ref|ZP_02892687.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
 gi|170133334|gb|EDT01726.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
          Length = 301

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 88/255 (34%), Gaps = 26/255 (10%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                A+ + ++++   L  G  +  + L+   
Sbjct: 12  LLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPIVVAARLLPAGQPIPADALKLAQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
                +  G  +D         L G +    IL   P+    L      GL+  +  G+R
Sbjct: 72  V--SMMPTGGFNDP------TALVGRVPANDILAAAPVLEGGLTS----GLADQVALGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------VTVVLSNIRVI--- 177
           A  + +  S+AVG  ++P + VDV +                      ++LS +RV+   
Sbjct: 120 AVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQATSEIPATQARLLLSKVRVLSFG 179

Query: 178 -AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
            A               TA L +   Q  AL  A++  +L+L LR+  D   ++   +  
Sbjct: 180 DATSDRDGGGGPSGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVR 239

Query: 237 WDVQEEGKEIQIIKA 251
               E     Q    
Sbjct: 240 TGGGEATPSAQAASG 254


>gi|83719123|ref|YP_443060.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
 gi|83652948|gb|ABC37011.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           E264]
          Length = 292

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 1   MLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 60

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I+   P+   +L+     GL+  +  G+R
Sbjct: 61  TPAPIA--GAFPNPTL------VTGRIPANDIVAQAPVLESELMS----GLADQIAPGER 108

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 109 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 168

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              D D           TA L +   Q  AL  A++  +L L LRS  D + ++
Sbjct: 169 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVAT 222


>gi|264680619|ref|YP_003280529.1| signal peptide protein, CpaB like protein [Comamonas testosteroni
           CNB-2]
 gi|262211135|gb|ACY35233.1| putative signal peptide protein, CpaB like protein [Comamonas
           testosteroni CNB-2]
          Length = 329

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 27/241 (11%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + + V+    +   ++A    +P            P   ++V+++   +  G V+    L
Sbjct: 11  VLLAVALALGIYGWMLAKAPQTPDPQAQTSASDSKPNANVSVVMASQPIPAGQVLKAEDL 70

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           + +  P   + DG   ++      Q   G +  V I KG P+   ++V     GL+  + 
Sbjct: 71  QVLQLPA--IPDGAYSEI------QAAVGSVPAVDIPKGAPVLQGQMVT----GLALKVS 118

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAID--- 180
           +G+RA  + +  +  VG  I+P D VDV            +    ++LS  RV+A     
Sbjct: 119 EGERAVAVKVDENIGVGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSRKRVLAYGAAS 178

Query: 181 ---------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
                                 TA L +   +   L+   S   L L LR+  D+     
Sbjct: 179 VDALSSAEKTEGKQANGPDNARTAVLAVPVAEVSQLLLGGSNGSLLLALRNPTDMTEPDR 238

Query: 232 E 232
           E
Sbjct: 239 E 239


>gi|134295594|ref|YP_001119329.1| SAF domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134138751|gb|ABO54494.1| SAF domain protein [Burkholderia vietnamiensis G4]
          Length = 314

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 36/247 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K+   + I ++ +    A ++     + H V  +  +  NPA    V+I+   L  G  +
Sbjct: 7   KIIAGLLIAIAVLLGFYAWMLGR--SASHSVPAQPAVAANPAP---VVIATRTLPAGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + ++  A    +V  G + D         + G +    I    PI  + LV     GL
Sbjct: 62  AADAVKLQAI--ASVPTGAVVDPAT------VVGRVPARDIPASAPITPDALVS----GL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLS 172
           +  +  G+RA  + +  ++AVG  ++P + VDV +                +    +++S
Sbjct: 110 AEDIQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGGGAMFDGEVSQTQARLLMS 169

Query: 173 NIRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV++                S+ +      A L +   Q  AL   ++  +L+L LR+
Sbjct: 170 KVRVLSFGDATPERDSGSTTNGSNGQPSNARIAVLAVPTAQVDALTLGEATGRLTLALRN 229

Query: 223 IADLNPS 229
             D   +
Sbjct: 230 PRDDELA 236


>gi|238027563|ref|YP_002911794.1| Flp pilus assembly CpaB [Burkholderia glumae BGR1]
 gi|237876757|gb|ACR29090.1| Flp pilus assembly CpaB [Burkholderia glumae BGR1]
          Length = 308

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 30/246 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           LT+++ + +  +  L+     M    P  V   +      AK + V+++   L  G+ + 
Sbjct: 5   LTKVLAVALIAIAVLLGAYAWMLGSRPSSVPRVQGSQPAQAKLVPVVVAVQPLKAGLPIA 64

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + L           DG   D  Q      + G +    I +   +    L    + G++
Sbjct: 65  ASSLRVQQ--AAARPDGAFVDPVQ------IIGRVPSADIPEQAAVVESSL----SSGMA 112

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------------KPTVT 168
            L+  G+RA  + +  ++AVG  ++P + VDV +                     K    
Sbjct: 113 DLVKPGERAVAIKVDENNAVGNHMRPGNFVDVFVNLKRDAAGGLPGTNSSGPEIPKTQAK 172

Query: 169 VVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           ++LS IRV+A      + +          TA L +   Q  AL  A++   L+L LRS  
Sbjct: 173 LLLSKIRVLAFGDATTARDPSGGAAGGVRTAVLAVPTAQIDALTLAEASGNLTLALRSPR 232

Query: 225 DLNPSS 230
           D + ++
Sbjct: 233 DEDVAT 238


>gi|254252521|ref|ZP_04945839.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
 gi|124895130|gb|EAY69010.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
          Length = 308

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 97/264 (36%), Gaps = 38/264 (14%)

Query: 6   LMGIVVSGVFALVAGIIAMRLV----SPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           L  I+   + A+   + A   +    SP      +++  NP  F+   I+   L  G  +
Sbjct: 5   LTKIIAGLLIAIAVLLGAYAWMLGRSSPAPAPAPQIVAANPMPFV---IATRTLPAGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+  +    ++  G   +        E+ G +    I    PI    LV     GL
Sbjct: 62  AADALKVQS--TTSIPAGAFANP------GEVVGRVPAKDIAASSPIVAGALVS----GL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLS 172
           +  +  G+RA  + +  ++AV   ++P + VDV +                +    ++LS
Sbjct: 110 AEDVQPGERAVAIRVDETNAVANRLRPGNFVDVFLNLKRDGGGAMLDGEISQTQARLLLS 169

Query: 173 NIRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV++                S+ +      A L +   Q  AL   ++  +L+L LR+
Sbjct: 170 RVRVLSFGDATPERDSGSSTNGSNGQPSSVRIAVLAVPTAQVDALTLGEASGRLTLALRN 229

Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246
             D   ++   +   D +     +
Sbjct: 230 PRDDELATQTVAVRTDNKRSPSAL 253


>gi|163856387|ref|YP_001630685.1| putative secreted protein [Bordetella petrii DSM 12804]
 gi|163260115|emb|CAP42416.1| putative secreted protein [Bordetella petrii]
          Length = 281

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 18/225 (8%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
             +  E+  E     ++ L+   DL  G  +    L     P   V  G  D    P A 
Sbjct: 37  QARVREIEREAEVLAVDKLVVATDLPAGTRLQAGHLAVRDIPVPWVASGSFD----PEAA 92

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPN 149
            ++ G ++   + +GD +    L         S L+P G+RA T+     +A  G+++  
Sbjct: 93  DQVIGAVLAADLRQGDALLDVHLAPAVAAPALSELVPAGRRAVTLPAEEINAAAGLLRAG 152

Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209
           D +D+ +  +   +  T   ++  +RV+A++   D+        + TL+ +   A  LVA
Sbjct: 153 DLIDLYVSFAHRGQHLTA-PLMQGVRVLAMESGADA------APSITLDASAQDAIKLVA 205

Query: 210 AQSVAKLSLVLRSIAD-LNPSSSEDSDVW-----DVQEEGKEIQI 248
           A+    L+ +LR   D   P  +   D+      D +E G    +
Sbjct: 206 ARHGGTLTAMLRHRGDGAAPPVTASGDLAALMGIDAREAGPRTAV 250


>gi|33593510|ref|NP_881154.1| putative secretory protein [Bordetella pertussis Tohama I]
 gi|33572866|emb|CAE42801.1| putative secretory protein [Bordetella pertussis Tohama I]
 gi|332382918|gb|AEE67765.1| putative secretory protein [Bordetella pertussis CS]
          Length = 281

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 14/248 (5%)

Query: 1   MKLTRLMGIVVSG---VFALVAGIIAMRLVSPHHVQTEEVITENP-AKFINVLISKGDLA 56
           M+  R    + +     FALVAG +A      H  +    I +      +  L++  DL 
Sbjct: 1   MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAALDLE 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-D 115
            G  +   ++     P+  +  G +     P+    LDG ++R P+  G+ ++   L   
Sbjct: 61  AGTPLHDELVAVRDMPQAWLPAGAL----LPDEAARLDGAVLRAPVKAGEALQAALLSYP 116

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
                L+  L  G+ A T+ +     +    +P D VD+ +  +  +R+     +L+  +
Sbjct: 117 EQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQ-LTMPLLAGSK 175

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           V+A+D            ST TL  +  +   LVAA+    L+ VLR         +    
Sbjct: 176 VLALDPADAQGG----ASTITLRASAREVARLVAARQEGTLTAVLRRAGAPAQGPARAFA 231

Query: 236 VWDVQEEG 243
               +E G
Sbjct: 232 APSAREAG 239


>gi|33601079|ref|NP_888639.1| hypothetical protein BB2096 [Bordetella bronchiseptica RB50]
 gi|33575514|emb|CAE32592.1| putative exported protein [Bordetella bronchiseptica RB50]
          Length = 277

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 14/225 (6%)

Query: 1   MKLTRLMGIVVSG---VFALVAGIIAMRLVSPHHVQTEEVITENP-AKFINVLISKGDLA 56
           M+  R    + +     FALVAG +A      H  +    I +      +  L++  DL 
Sbjct: 1   MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAARDLE 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-D 115
            G  +   ++     P+  +  G +     P+    LDG ++R P+  G+ ++   L   
Sbjct: 61  AGTPLHDELVAVRDMPQAWLPAGAL----PPDEAARLDGAVLRAPVKAGEALQAALLSYP 116

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
                L+  L  G+ A T+ +     +    +P D VD+ +  +  +R+     +L+  +
Sbjct: 117 EQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQ-LTMPLLAGSK 175

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           V+A+D            ST TL  +  +   LVAA+    L+ VL
Sbjct: 176 VLALDPADAQGG----ASTITLRASAREVARLVAARQEGTLTAVL 216


>gi|115351455|ref|YP_773294.1| CpaB family Flp pilus assembly protein [Burkholderia ambifaria
           AMMD]
 gi|115281443|gb|ABI86960.1| Flp pilus assembly protein CpaB family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 26/255 (10%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                A+ + ++++   L  G  +  + L+   
Sbjct: 12  LLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPIPADALKLAQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P   +  G   D         L G +    IL   P+    L      GL+  +  G+R
Sbjct: 72  VP--MMPTGGFSDP------TALVGRVPANDILAAAPVLEGALTS----GLADQVALGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------VTVVLSNIRVIAID 180
           A  + +  S+AVG  ++P + VDV +                      ++LS +RV++  
Sbjct: 120 AVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARLLLSRVRVLSFG 179

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
                 +          TA L +   Q  AL  A++  +L+L LR+  D   ++   +  
Sbjct: 180 DATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVR 239

Query: 237 WDVQEEGKEIQIIKA 251
                     Q    
Sbjct: 240 TGGGGATPSAQAASG 254


>gi|114321312|ref|YP_742995.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227706|gb|ABI57505.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 316

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 89/257 (34%), Gaps = 33/257 (12%)

Query: 1   MKLTRLMGIVVSGV-FALVAGIIAMRLVSPHHVQ---------TEEVITENPAKFINVLI 50
           M    L+ + +  +  ALV G   + LV+    +          E            V+ 
Sbjct: 1   MNSRVLIVLAIVFIGAALVVGWWGISLVTDDESEIRIDEVTDVPEPDEPRPDEDGHPVVF 60

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  +L  G +V    +         V      D       +E+ G+ V  PI +G+ +  
Sbjct: 61  AVTELEPGQLVGEADIHTETL--RRVPPLAFSDP------EEVIGLRVEAPIQEGELLTA 112

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170
            +        +S  L  G+RA  + +     VGG + P D VDV++  S         ++
Sbjct: 113 PRFSVASQ--VSRGLLPGERAVAISVDDVIGVGGYLSPGDRVDVMLYLSQRGVGEIGRLL 170

Query: 171 LSNIRVIA------------IDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
             NIRV+A            +D   +   +R     TA L L       L+ A S   L 
Sbjct: 171 HPNIRVLAYGEDLAIPPDGVVDRRDEEGTQRQRGARTAVLALPEEDVATLLLADSAGTLR 230

Query: 218 LVLRSIADLNPSSSEDS 234
           L  R   +  P    ++
Sbjct: 231 LAARPAIERRPDFDPEA 247


>gi|78066130|ref|YP_368899.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
 gi|77966875|gb|ABB08255.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
          Length = 300

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 91/240 (37%), Gaps = 31/240 (12%)

Query: 10  VVSGVFALVAGIIAMR--LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
           +++G+   +A ++ +   ++         V      + + V+++   L  G  +  + L+
Sbjct: 8   IIAGLLIAIAVLLGVYAWMLGRKPADVAPVAATVATQSVPVVVTTRALPAGQPIPADALK 67

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
                      G   D  Q      L G +    I     I    L    + GL+  +  
Sbjct: 68  VQQ--STAAPQGAFADPLQ------LVGRVPAADIPAQAAIVASAL----SSGLAEQIAP 115

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-------------VTVVLSNI 174
           G+RA  + +  ++AVG  ++P ++VDV +                         +++S +
Sbjct: 116 GERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQARLLMSKV 175

Query: 175 RVIAIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           RV++          S+  V+   TA L +   Q  AL  A+   +L L LR+  D + ++
Sbjct: 176 RVLSFGDATTERDSSNGSVVGMRTAVLAVPTAQVDALTLAEQSGRLVLALRNPRDDDVAA 235


>gi|187478777|ref|YP_786801.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423363|emb|CAJ49897.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 270

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 19/232 (8%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
             +  ++   N    +  L++  DL  G ++T + +     P+             P   
Sbjct: 46  QAKERDLQHRNQVVMVTRLVAWADLEAGQLLTEDDIASREIPKNWAP----HQSLSPEQT 101

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
             L G  ++VP++ G PI    +    + G ++ L  GKRA T+ +   + +   ++  D
Sbjct: 102 GLLIGSRLKVPVMAGQPILQADIEFV-SPGTAARLGVGKRALTLPVRELADMPPDMREGD 160

Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
            +D+ +  +  +++ T+  +L N +V+A                  LE        ++AA
Sbjct: 161 RLDIYVSLTHHDKRLTL-PLLQNGKVLA-------APGPESAQVV-LEADAQDVTRVIAA 211

Query: 211 QSVAKLSLVLRSIADL-----NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           +    L+L LRS  D      +      +D+  + EEG     +  G   N 
Sbjct: 212 RQAGSLTLALRSPEDAAYPAHDEPGGALADILGLAEEGDAGVPVLYGDESND 263


>gi|107022593|ref|YP_620920.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116689542|ref|YP_835165.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
 gi|170732846|ref|YP_001764793.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
 gi|105892782|gb|ABF75947.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116647631|gb|ABK08272.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
 gi|169816088|gb|ACA90671.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
          Length = 301

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 87/237 (36%), Gaps = 30/237 (12%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ G+ A  ++         V      + + V+++   L  G  +    L+   
Sbjct: 12  LLIAIAILLGVYA-WMLGRKPADVAPVAATVATQSVPVVVTTRPLQAGQPIPAEALKVQQ 70

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
                   G   D  Q      L G +    I     +    L    + GL+  L  G+R
Sbjct: 71  --STAAPQGAFADPLQ------LVGRIPAADIPAQAAVVASAL----SSGLAEQLAPGER 118

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-------------VTVVLSNIRVI 177
           A  + +  ++AVG  ++P ++VDV +                         +++S +RV+
Sbjct: 119 AVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQARLLMSKVRVL 178

Query: 178 AIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +          S+  V+   TA L +   Q  AL  A+   +L L LRS  D + ++
Sbjct: 179 SFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRSPRDEDVAT 235


>gi|171317112|ref|ZP_02906315.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MEX-5]
 gi|171097746|gb|EDT42573.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MEX-5]
          Length = 308

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 92/256 (35%), Gaps = 36/256 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K+   + I ++ +  L A      ++         V T   A  + V+++   L  G  +
Sbjct: 7   KIIAGLLIAIAVLLGLYA-----WMLGRSSPGPAPVSTTFAANPVPVVVATRALPAGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+    P      G   D         L G +    I    PI    LV     GL
Sbjct: 62  AADALKLQ--PIAPAPTGAFGDPAM------LVGRVPAKEIAASSPIVAGALVS----GL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLS 172
           +  +  G+RA  + +  ++AVG  ++P + VDV +                +    ++LS
Sbjct: 110 AEDVQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGGGTMIDGEVSQTQARLLLS 169

Query: 173 NIRVIAI-DHNIDSD---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV++  D   D D          +      A L +   Q  AL   ++  +L+  LR+
Sbjct: 170 KVRVLSFGDATPDRDSGSNSNSNNGQPSNARIAVLAVPTAQVDALTLGEASGRLTFALRN 229

Query: 223 IADLNPSSSEDSDVWD 238
             D   ++   +   D
Sbjct: 230 PRDDELATQTVAMRTD 245


>gi|299532818|ref|ZP_07046205.1| putative signal peptide protein, CpaB like protein [Comamonas
           testosteroni S44]
 gi|298719042|gb|EFI60012.1| putative signal peptide protein, CpaB like protein [Comamonas
           testosteroni S44]
          Length = 329

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 92/272 (33%), Gaps = 30/272 (11%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + + V+    +   ++A    +     +           ++V+++   +  G  +    L
Sbjct: 11  VLLAVALALGVYGWMLARAPQAADPQASASASDSKSNAGMSVVVAAQAIPAGQALKTEDL 70

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P +   DG          +Q   G +  V + KG P+   ++V     GL+  L 
Sbjct: 71  QLTQLPAK--PDGAY------GEIQAAVGSVPAVDVPKGAPVLQGQMVT----GLALKLS 118

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAID--- 180
           +G+RA  + +  S   G  I+P D VDV            +    ++LS  RV+A     
Sbjct: 119 EGERAVAVKVDESIGAGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSRKRVLAYGAAS 178

Query: 181 ---------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
                                 TA L +   +   L+   S   L L LR+  D+    S
Sbjct: 179 VDALSSAEKTEGKQANGPDNARTAVLAVPVAEVNQLLLGGSNGSLLLALRNPMDMTEPDS 238

Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263
           E             + + K  V V  +G   +
Sbjct: 239 EKFAPL---PGILAVAMAKGSVAVPLEGADAA 267


>gi|206559893|ref|YP_002230657.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035934|emb|CAR51826.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 87/237 (36%), Gaps = 30/237 (12%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ G+ A  ++         V      + + V+++   L  G  +  + L+   
Sbjct: 12  LLIAIAILLGVYA-WMLGRKPGDVAPVAATVATQSVPVVVTTRPLQAGQPIPADALKVQQ 70

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
                   G   D  Q      L G      I     +    L    + GL+  +  G+R
Sbjct: 71  --STAAPQGAFADPLQ------LVGRTPAADIPAQAAVVASAL----SSGLAEQIAPGER 118

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-------------VTVVLSNIRVI 177
           A  + +  ++AVG  ++P ++VDV +                         +++S +RV+
Sbjct: 119 AVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQARLLMSKVRVL 178

Query: 178 AIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +          S+  V+   TA L +   Q  AL  A+   +L L LR+  D + ++
Sbjct: 179 SFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRNPRDDDVAT 235


>gi|187926426|ref|YP_001892771.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
 gi|241665913|ref|YP_002984272.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
 gi|187728180|gb|ACD29344.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
 gi|240867940|gb|ACS65600.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
          Length = 307

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 28/244 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
             S H         ++      V+++   L  G  +T + +     P          DV 
Sbjct: 25  WKSAHRPPAPVAEQKDGKAVYPVVVTTKPLEAGKPITADQVAIEQLPIN--PAEAFSDV- 81

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
                 ++ G    +P+  G P+   +L    + GL+  +  G+RA  +++     VG  
Sbjct: 82  -----TKVVGREPILPVGVGVPLIASQL----SSGLAQQVEAGQRAVAINVDEVVGVGNR 132

Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAID------------HNIDSDERVL 190
           + P D+VDV +V     ++       ++L ++RV+A               N     +V 
Sbjct: 133 VMPGDYVDVFLVMRKDGQEIEDSQARLLLPHLRVLAFGPLAINEGPQKQPENSGVTRKVD 192

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI-QII 249
              TA L +       L  A    +L L LR+  D    + +  D   +    +    + 
Sbjct: 193 QAKTAVLAVPVEAVSQLAMAHQSGRLLLALRNPGDDAEPTVKPQDAALLAAANRNPMDVA 252

Query: 250 KAGV 253
           +AGV
Sbjct: 253 QAGV 256


>gi|257064753|ref|YP_003144425.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM
           20476]
 gi|256792406|gb|ACV23076.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM
           20476]
          Length = 273

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 16/241 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           + + + GI+     AL   + A +L +    Q  E +     +   V ++  D+A G  V
Sbjct: 4   RKSVVFGILCGIACALCVAMYAQQLQADADAQRAEALARYGGEQTEVWVATRDIAPGETV 63

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
                E+  +  E +    + D+        L+  +   PI++G+ I  ++ V      L
Sbjct: 64  DETNAEYRMWLVELLPHDAVSDLAG------LESRVATSPIVQGEVISAQRFVADDEA-L 116

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
            + +P+G  A ++     + VGG I+    VDV +         T  ++  ++ V+    
Sbjct: 117 GTPVPEGLCAVSVPAEDVATVGGSIRAGSRVDVYV-----SSGTTTDLLAHDVLVLFT-- 169

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
           +  S +     S ATL + P   + L++A     L   L   +D   +    +   +  E
Sbjct: 170 SASSADGSEAISWATLAVEPEMVQELISAAERTSLYFSL--PSDSVLADGSYATESEKGE 227

Query: 242 E 242
            
Sbjct: 228 A 228


>gi|309778770|ref|ZP_07673543.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
 gi|308922478|gb|EFP68102.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
          Length = 307

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 28/244 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
             S H         ++      V+++   L  G  +T + +     P          DV 
Sbjct: 25  WKSAHRPPAPVAEQKDGKAVYPVVVTTKPLEAGKPITADQVAIEQLPIN--PAEAFSDV- 81

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
                 ++ G    +P+  G P+   +L    + GL+  +  G+RA  +++     VG  
Sbjct: 82  -----TKVVGREPILPVGVGVPLIASQL----SSGLAQQVEAGQRAVAINVDEVIGVGNR 132

Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDE------------RVL 190
           + P D+VDV +V     ++       ++L ++RV+A      ++             +V 
Sbjct: 133 VMPGDYVDVFLVMRKDGQEIEDSQARLLLPHLRVLAFGPLAVNEGPQKQPESNNVTRKVD 192

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI-QII 249
              TA L +       LV A    +L L LR+  D    + +  D   +    +    + 
Sbjct: 193 QAKTAVLAVPVEAVSQLVMAHQSGRLLLALRNPGDDAEPTVKPQDAALLAAANRNPMDVA 252

Query: 250 KAGV 253
           +AGV
Sbjct: 253 QAGV 256


>gi|156744073|ref|YP_001434202.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941]
 gi|156235401|gb|ABU60184.1| SAF domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 267

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 26/258 (10%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT----ENPAKFINVL---ISKGD 54
           + +  + + +  + A+ AG +   ++    V   E          A  + V+   ++   
Sbjct: 10  RRSGWILLTLGAILAIGAGALVYLVLQQQSVAAAEQARREVLAQQAPQVPVIKLPVAARP 69

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
           LA G  + P+ +    +P   V    + D  Q      ++  ++   + +GDP +    V
Sbjct: 70  LAPGNTIGPDDILLKDYPVNLVPVNALTDTTQ------IENRILARTVGQGDPFQKSMFV 123

Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV------- 167
                 +S  +P G       I        +I   D +D+ +  +               
Sbjct: 124 GERGESISQEIPPGYVLFAFPIVDLLGQSNLIADGDRIDLYLTLNTPLNAAATPAPDQPT 183

Query: 168 ----TVVLSNIRVIAIDHNIDSDERVLVGSTATL-ELTPMQAKALVAAQSV-AKLSLVLR 221
                + L N++V+ +  +   +      +TA L  + P  A  L   +     +   LR
Sbjct: 184 TPTTALTLQNVQVLKVLRSEPREGATKTPATALLCAMRPEDAIILKHIKDTGGTIDFALR 243

Query: 222 SIADLNPSSSEDSDVWDV 239
           S  D  P ++E  D+ ++
Sbjct: 244 SPLDTEPFTTEPLDLPEL 261


>gi|311107632|ref|YP_003980485.1| Flp pilus assembly protein CpaB 2 [Achromobacter xylosoxidans A8]
 gi|310762321|gb|ADP17770.1| Flp pilus assembly protein CpaB 2 [Achromobacter xylosoxidans A8]
          Length = 319

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 92/247 (37%), Gaps = 28/247 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA---KFINVLISKGDLAVG 58
           K+   M +V   V A VA  +A    SP        +   PA   K   V++++  +  G
Sbjct: 6   KIVAGMLLVAGLVLAFVAWRLASAPASPPPGVAPAPVAAAPAEPLKLHPVVVARQPIPAG 65

Query: 59  MVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
             + + ++L    +  +    G   D+        L+G + +V I  GDPI    L    
Sbjct: 66  SRIDSASMLTVAQW--QVALSGGFADIAP------LEGAVAKVDIAAGDPIVPSLLTQ-- 115

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIR 175
             GL+  L  G+RA  + +      G  I P D VDV  +   S         ++ S +R
Sbjct: 116 --GLARQLKPGERAVAIAVDEVIGGGNRIVPGDMVDVFFMIEKSAEVAVGQARLLQSQVR 173

Query: 176 VIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V+A              +          TA L +   +   L+ A    +L L LR + D
Sbjct: 174 VLAYGRASVEGPDEKSALQQGGPGQPARTAVLAVPVDRVNELMLAGRAGRLQLALRPVGD 233

Query: 226 LNPSSSE 232
            +   ++
Sbjct: 234 DSMPDAQ 240


>gi|330976800|gb|EGH76835.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 329

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 53/283 (18%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFIN------------ 47
           M     M + V  +  AL+AG + + +  P  V  E   +  P                 
Sbjct: 11  MSSRVTMVLAVLFLLGALIAGYLGIVVGRPTEVPVETPPSAPPVTTKQTTPPAPTPHVEE 70

Query: 48  -----VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
                V++   D+     +T + L       +    G         A+ ++ G      +
Sbjct: 71  ALRHNVVVLAKDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 122

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160
             G  +        G   L+ ++   +RA  + +   +   G + P D+VDV++     +
Sbjct: 123 TAGSWLTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 180

Query: 161 SERKPTVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
           S    +  VV+  +RV+ +                  D  +  +++ +   T T+ +   
Sbjct: 181 SNPNRSSQVVVPALRVLGVGALLGPDRNGKPVQDLNADERLKQEQQRINARTVTVAVPQA 240

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
               L+ A     L L +RS  + N       D W  +  G E
Sbjct: 241 LVARLMLASQTGVLRLAVRSADEGNL-----QDYWANEAGGPE 278


>gi|167562916|ref|ZP_02355832.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis
           EO147]
          Length = 226

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 26/227 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L            T      + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPAAPSAATAVATAVVPVVVATRALPTGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I+   P+   +L+     GL+  +  G+R
Sbjct: 72  MPASVA--GAFSNPAL------VTGRIPASDIVAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV M                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFMNMKRESSFGTTGSEISQSQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
              D D           TA L +   Q  AL  A++  +L L LRS 
Sbjct: 180 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSP 226


>gi|299069499|emb|CBJ40768.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia
           solanacearum CMR15]
          Length = 310

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 96/262 (36%), Gaps = 28/262 (10%)

Query: 1   MKLTRLMGIVV-SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M    L        + A++ G++A +              EN      V+++   L  G 
Sbjct: 1   MTSKYLQIFAAGLLLLAVILGVVAWKNAHRPPAPVAAQQNENGKTLYPVVVTVKPLEAGK 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +T + +   + P        I+     + + ++ G    VPI  G P+   +L    + 
Sbjct: 61  PITADQVGVESLP--------INPADGFSEVNKVVGREPIVPIGIGVPLIGSQL----SS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176
           GL+  +  G+RA  + +     VG  + P D+VDV +V     ++       ++L ++RV
Sbjct: 109 GLALQVEPGQRAVAITVDEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRV 168

Query: 177 IAIDHNIDSDE------------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           +A      ++             RV    TA L +       L  +Q   +L + LR+ +
Sbjct: 169 LAFGPLAVNEGPQKQGDAGAVARRVDQAKTAVLAVPVESVSQLAISQQSGRLLMALRNPS 228

Query: 225 DLNPSSSEDSDVWDVQEEGKEI 246
           D    +    D   +    +  
Sbjct: 229 DEAEPTVRPQDAQTLAVANRNP 250


>gi|188592031|ref|YP_001796629.1| flp pilus assembly cpab [Cupriavidus taiwanensis LMG 19424]
 gi|170938405|emb|CAP63392.1| putative Flp pilus assembly CpaB [Cupriavidus taiwanensis LMG
           19424]
          Length = 316

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 27/240 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   ++  + +  +   V   +    V     Q        P     V+++      G  
Sbjct: 1   MTSKQIRLLAIVLLGLAVLLALLAWQVGRQPAQPAASAGARPMH--AVVVTTRPAEAGKP 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L+    P +    G   DV +      + G +  V +    P+   +L+     G
Sbjct: 59  LDAEALKVEMLPID--PAGAYRDVAR------VTGQVPLVALGANVPVLESQLLS----G 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVI 177
           L++ +P+G+RA  + +     VG  ++P D+VDV +V    +++       ++LS +RV+
Sbjct: 107 LAAQVPEGERAVAVSVDEVIGVGNQVQPGDYVDVFLVLRRDQQEIPDSQARMLLSRLRVL 166

Query: 178 AID-------HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           A           +  ++   R     TA L +   Q   L  AQ   +L L LR+  D  
Sbjct: 167 AYGVASVNRPQAVKPEQMMARQEGAKTAVLSVPLEQVSRLAMAQHSGRLMLALRNPQDEA 226


>gi|187921505|ref|YP_001890537.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
 gi|187719943|gb|ACD21166.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
          Length = 366

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 42/286 (14%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++  +   V A +  ++   L        +++        + V++   D+ V   ++ + 
Sbjct: 16  ILLFLAVLVAAGLTFLLYKYLSDREKKLKDDMSAHRVRAGVVVVVPARDVPVDTPLSSSD 75

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
                   + V     DD+ + +   +     +  P+ +G P+R   +        S +L
Sbjct: 76  FVAREIDGDLV----YDDMIRADNFDKYRMSHLVKPVRRGLPLRAADIDALHGRDFSDVL 131

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179
             G RA T+DI   ++   M++P + VDV  +  +      ++ K    ++L+N  ++A 
Sbjct: 132 RSGTRAVTVDIDTVNSTALMLRPGNRVDVYWIGKVYHQDNSNDDKKVAQLMLANTLILAT 191

Query: 180 DHNID--------------------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
             ++                     S +  +  +T TLE+    A  +  AQ +  L L+
Sbjct: 192 GQDMRPRDAGEAMQEDPANANSSAMSRQPGVGYTTVTLEVPVADAGRIALAQKIGGLRLI 251

Query: 220 LRSIADLNP------------SSSEDSDVWDVQEEGKEIQIIKAGV 253
           LR+  D                      +       K ++II  G 
Sbjct: 252 LRNSDDKGTNGPSLVQENDVFVDPGRGRLSGSGPAPKTVEIIAGGS 297


>gi|320101691|ref|YP_004177282.1| Flp pilus assembly protein CpaB [Isosphaera pallida ATCC 43644]
 gi|319748973|gb|ADV60733.1| Flp pilus assembly protein CpaB [Isosphaera pallida ATCC 43644]
          Length = 436

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 7/173 (4%)

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDI 136
             F D                   I KG+ I  + L D     G+ + +  G R  ++ +
Sbjct: 155 PVFFDRAGLQRLADAKSPYWASQTIGKGEIITRDMLGDPATIPGVYTNVRPGYRGISIKV 214

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER--VLVGST 194
           +  +  GG + P ++VDV    ++   + T  ++L N++V+A+   I  D +   +   T
Sbjct: 215 TPETGGGGHVLPGNYVDV---GAVYTNQRTAKILLQNVKVLAVGEAIKPDPKKAAMNAQT 271

Query: 195 ATLELTPMQAKALVAA-QSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246
             LEL P +A  L  A      L L++R   D    S +  +V   + E + +
Sbjct: 272 VVLELKPEEANLLQVAVGQRGTLRLLIRGNKDDQLLSEDKLEVVYGESEAERL 324


>gi|300694112|ref|YP_003750085.1| flp pilus assembly protein precursor (cpab) [Ralstonia solanacearum
           PSI07]
 gi|299076149|emb|CBJ35462.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia
           solanacearum PSI07]
          Length = 310

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 29/243 (11%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFI--NVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           + A+   + H         +N        V+++   L  G  +T + +   + P      
Sbjct: 20  LGAVAWKNAHRPPAPVAAQQNENGKTLYPVVVTVKPLEAGKPITADQVGVESLPIN--PA 77

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
               DV       ++ G    VPI  G P+   +L    + GL+  +  G+RA  + +  
Sbjct: 78  DAFADVS------KVVGREPIVPIGVGVPLIGSQL----SSGLALQVVPGQRAVAITVDE 127

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDE-------- 187
              VG  + P D+VDV +V     ++       ++L ++RV+A      ++         
Sbjct: 128 VVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAVNEGPQKQPDAN 187

Query: 188 ----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
               RV    TA LE+       L  A    +L L LR+ +D    +    D   +    
Sbjct: 188 ALTRRVDQAKTAVLEVPVESVNQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAQALAVAN 247

Query: 244 KEI 246
           +  
Sbjct: 248 RNP 250


>gi|297568754|ref|YP_003690098.1| Flp pilus assembly protein CpaB [Desulfurivibrio alkaliphilus AHT2]
 gi|296924669|gb|ADH85479.1| Flp pilus assembly protein CpaB [Desulfurivibrio alkaliphilus AHT2]
          Length = 292

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 21/215 (9%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
               E  A +  ++++   L+ G  +T   ++ V  P   V           ++++E+  
Sbjct: 46  AKPEETAADWPRIVVAGQPLSRGEPITAAAVQLV--PARLVPPDSF------SSLEEVVE 97

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
               V +  G+P+     +      L+ +L   +RA  + ++ +  VGG + P DHVDV+
Sbjct: 98  RRPAVSLQIGEPLTKRHFLPGSE--LAHVLDPDERAVAIVVNDAIGVGGFLAPGDHVDVL 155

Query: 156 MVRSLSERK---PTVTVVLSNIRVIAIDH---NIDSDERVLVGS-----TATLELTPMQA 204
           +  +  +R+       ++L+  R++A         +  +   G+     TA L +    A
Sbjct: 156 LYLAADQRRRQPAQARILLARQRLLAYGQAPAAAKAGTQPARGAGRGSDTAVLAVRTEDA 215

Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
             L+ A  V  L L L           E     D 
Sbjct: 216 PKLLLAAQVGTLHLALHGPEPGRVLGEEADSTLDA 250


>gi|323525745|ref|YP_004227898.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
 gi|323382747|gb|ADX54838.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
          Length = 320

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 24/213 (11%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
                +         V+++   L  G  +  + L     P     +G   D         
Sbjct: 30  PAPAPVAPVRQTVFPVVVATRVLPAGKPIAADALRVQPLPIN--PNGAFADPSL------ 81

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           + G +    I    P+  E+L    + GL+  +  G+RA  + +  S+AVG  ++P + V
Sbjct: 82  VAGRVPAADIGAEAPVLEEQL----SSGLAERIQPGERAVAVRVEESNAVGNRLRPGNFV 137

Query: 153 DVVMVRSLSERKPT--------VTVVLSNIRVIAIDHNI----DSDERVLVGSTATLELT 200
           DV           +          +++S +RV+A  +       S +   +  TA L + 
Sbjct: 138 DVFFTLKRDGNLGSGGEIEHTQARLLMSKLRVLAFGNATAAGDTSGDPNGMVRTAVLAVP 197

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
                 L  A++  +L   LR+  D     +  
Sbjct: 198 VADVDRLTLAETSGRLVFALRNPKDNEVIDAGA 230


>gi|317489770|ref|ZP_07948269.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA]
 gi|316911116|gb|EFV32726.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA]
          Length = 306

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 3/231 (1%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R+  +      ++    +++         +   +    A  +  L++  D+  G  +T 
Sbjct: 76  VRVKRLATIVAASVALTAVSVSYGVWSAAASRAAVEHATAGALPTLVAAADIRAGDAITA 135

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
             +     P        +      +A     G    V I  G  +    +   G   LS+
Sbjct: 136 EAVTVQDVPATYRAASAL-GGEALDAEGLAAGGRAIVDIPAGTQLSSSFVTGMGGDRLSA 194

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183
            L  G +A T+ + + + + G ++P D V +V     S  +  +  V    RV+A+    
Sbjct: 195 ELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERARVVAVGD-- 252

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           D+       ++ T+E++P +A A+  AQ   ++SLVL +  D       D 
Sbjct: 253 DATGVQSGSASVTVEVSPEEADAVREAQFAGRVSLVLVAADDAFEEVGADG 303


>gi|257790321|ref|YP_003180927.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325830034|ref|ZP_08163491.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
 gi|257474218|gb|ACV54538.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325487501|gb|EGC89939.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
          Length = 306

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 3/231 (1%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R+  +      ++    +++         +   +    A  +  L++  D+  G  +T 
Sbjct: 76  VRVKRLATIVAASVALTAVSVSYGVWSAAASRAAVEHATAGALPTLVAAADIRAGDAITA 135

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
             +     P        +      +A     G    V I  G  +    +   G   LS+
Sbjct: 136 EAVTVQDVPATYRAASAL-GGEALDAEGLAAGGRAIVDIPAGTQLSSSFVTGMGGDRLSA 194

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183
            L  G +A T+ + + + + G ++P D V +V     S  +  +  V    RV+A+  + 
Sbjct: 195 ELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERARVVAVGDDA 254

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
            S +     ++ T+E++P +A A+  AQ   ++SLVL +  D       D 
Sbjct: 255 TSVQSGS--ASVTVEVSPEEADAVREAQFAGRVSLVLVAADDAFEEVGADG 303


>gi|258627505|ref|ZP_05722286.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603]
 gi|258580311|gb|EEW05279.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603]
          Length = 112

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 147 KPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205
            P + VDV+   S S+       VL +I+V+A+D    S E + ++    TLE+TP QA+
Sbjct: 2   LPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVTPEQAE 61

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
            L++AQS  ++ L LR+     P   E+      +     + IIK 
Sbjct: 62  KLLSAQSKGEIQLTLRN-----PHEPEEKVAVTRRYVAPSVTIIKG 102


>gi|300697743|ref|YP_003748404.1| Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum
           CFBP2957]
 gi|299074467|emb|CBJ54017.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia
           solanacearum CFBP2957]
          Length = 311

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 84/239 (35%), Gaps = 31/239 (12%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFI--NVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           + A+   S H      V  +N        V+++   L  G  +  + +   + P      
Sbjct: 20  LGAVAWKSAHRPPAPAVAQQNENGKTLYPVVVTIKPLEAGKPIAADQVAVQSLPIN--PA 77

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
               DV       ++ G    VPI  G P+   +L    + GL+  +  G+RA  + +  
Sbjct: 78  DAFADV------GKVVGREPIVPIGIGVPLIGSQL----SSGLALQVAPGQRAVAITVDE 127

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNI----DSDERVLV 191
              VG  + P D+VDV +V     ++       ++L ++RV+A            +    
Sbjct: 128 VVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAINEGPQTQPEAG 187

Query: 192 GSTAT----------LELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
            +T T          L +       L  A    +L L LR+ +D    +    D   + 
Sbjct: 188 ANTVTRRVDQAKTAVLAVPVESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDALALA 246


>gi|168703131|ref|ZP_02735408.1| flp pilus assembly protein [Gemmata obscuriglobus UQM 2246]
          Length = 442

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 33/271 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ +VV+    LVA  +  ++            +  P + + V+++  DL VG +
Sbjct: 1   MKQKNVILMVVAVGCGLVAAFLTAQM------------SAKPIEQMEVVVAAKDLPVGTM 48

Query: 61  VTPNILEW----VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           +    L+     V  P+E +    + +       +EL    +  PI   + I  + L   
Sbjct: 49  LGKEDLKAAVKIVKRPKEGLPPTVVLNP------EELVDKRLSRPIRAEEVINSQDLSKG 102

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
           G       LP+G    ++ +    A  G + P   V+V     L   K     +L ++ V
Sbjct: 103 GV----ITLPEGYHMVSLQLGAGQAAAGFVGPGSRVNVHATMRLGN-KIEAFPLLVDMLV 157

Query: 177 IAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE- 232
           +A+        +      +  +  +   QA  L  A+S    + L+LR   +   S    
Sbjct: 158 VAVGTETAYSKEGTFPNLNMVSFAVQEKQALLLSLAKSRGCNIELMLRHPGESIESDKAF 217

Query: 233 --DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
             D  +  + +E    Q+  AG    K   G
Sbjct: 218 NIDEVIKKLSDEKNPAQVTGAGESTPKGKSG 248



 Score = 44.1 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
               ++     P   + VL++K D+     +T +++    F E  +   F         +
Sbjct: 265 PPAPQQKPEPPPIPMVKVLVAKSDIKPNTEITADLIR-EEFEEATLPKQF--AGGALGDL 321

Query: 91  QELDGVLVRVPILKGDPIRLEKL 113
            E  G  +R  + KG  +    +
Sbjct: 322 NEALGQFLRTGVAKGQWVTPGMV 344


>gi|254245568|ref|ZP_04938889.1| Flp pilus assembly CpaB [Burkholderia cenocepacia PC184]
 gi|124870344|gb|EAY62060.1| Flp pilus assembly CpaB [Burkholderia cenocepacia PC184]
          Length = 309

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 93/248 (37%), Gaps = 38/248 (15%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K+   + I ++ +  + A ++     SP   Q    +T      + ++I+   L  G  +
Sbjct: 7   KIIAGLLIAIAVLLGIYAWVLGRSASSPPPAQPRTAVTA-----VPIVIATRTLPGGQPI 61

Query: 62  TPNILEWVA--FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
             + L+  +   P      G  +D         L G +    +    P+  + LV     
Sbjct: 62  PADALKVQSSTVPA---PAGAFNDPAL------LVGRMPIRDVPASTPVVADALVS---- 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170
           GL+  +  G+RA  + +  ++AVG  ++P + VDV +         +      +    ++
Sbjct: 109 GLAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREVGTTMLDGEVSQTQARLL 168

Query: 171 LSNIRVIAIDHNIDSDE---------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
           LS +RV++        +         +      A L +   Q  AL   ++  +L+  LR
Sbjct: 169 LSKVRVLSFGDATAERDSGNNNGGNGQPTGARIAVLAVPTAQVDALTLGEASGRLTFALR 228

Query: 222 SIADLNPS 229
           +  D   +
Sbjct: 229 NPRDDELA 236


>gi|207724790|ref|YP_002255187.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
 gi|206590015|emb|CAQ36976.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
          Length = 311

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 83/241 (34%), Gaps = 29/241 (12%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           ++ G +A +              EN      V+++   L  G  +T + +   + P    
Sbjct: 18  VILGAVAWKSAHRPPAPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVAVESLPIN-- 75

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136
                 D        ++ G     PI  G P+   +L    + GL+  +  G+RA  + +
Sbjct: 76  PADAFADA------GKVVGREPITPIGTGVPLIGSQL----SSGLALQVAPGQRAVAITV 125

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNI----DSDERV 189
                VG  + P D+VDV +V     ++       ++L ++RV+A            +  
Sbjct: 126 DEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAINEGPQTQPE 185

Query: 190 LVGSTAT----------LELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
              +T T          L +       L  A    +L L LR+ +D    +    D   +
Sbjct: 186 SGANTVTRRVDQAKTAVLAVPVESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAQAL 245

Query: 240 Q 240
            
Sbjct: 246 A 246


>gi|331014709|gb|EGH94765.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 357

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 47/277 (16%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47
            L+  V+  + AL+AG + + +  P  V          V  E PA+             N
Sbjct: 44  TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPVTPPVEEALRHN 103

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V++   D+     +T   L       +    G  + +        L G      +  G  
Sbjct: 104 VVVLARDIPAYTPITAEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTLTAGTW 155

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165
                    G   L+ ++   +RA  + +   +   G + P D+VDV++        P  
Sbjct: 156 PSESSFDAGGT--LARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 213

Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207
           +  VV+  +R++ +              NI +DER       +   T T+ +       L
Sbjct: 214 SSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 273

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           + A     L L +RS  + N      S+        +
Sbjct: 274 MLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310


>gi|255020087|ref|ZP_05292158.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC
           51756]
 gi|254970449|gb|EET27940.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC
           51756]
          Length = 419

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 11/160 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLV-----SPHHVQTEEVITENPAKFINVLISKGDLA 56
           K  R +G  +    A++AG+ A  L      S       E+        I  ++   D+A
Sbjct: 17  KPARAIGGWLILAVAILAGLGATYLAVHTLRSREEAALAELRASQKNSTIKAVVPVQDIA 76

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G ++  +++   + P +      I     P    +  G  V VP+L+G PI    L   
Sbjct: 77  PGTILDLSMVAARSIPADTAPSDVIT----PETFDQYAGHRVNVPLLQGRPILASYLS-- 130

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           G   L+ ++   K A T  +   S + G+++P DHVDV+ 
Sbjct: 131 GRRTLADIVDPDKLAMTFTVDNVSTLDGLLQPGDHVDVLW 170


>gi|28871965|ref|NP_794584.1| hypothetical protein PSPTO_4850 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855218|gb|AAO58279.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 357

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 47/277 (16%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47
            L+  V+  + AL+AG + + +  P  V          V  E PA+             N
Sbjct: 44  TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPVTPPVEEALRHN 103

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V++   D+     +T   L       +    G  + +        L G      +  G  
Sbjct: 104 VVVLARDIPAYTPITAEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTLTAGTW 155

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165
                    G   L+ ++   +RA  + +   +   G + P D+VDV++        P  
Sbjct: 156 PSESSFDAGGT--LARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 213

Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207
           +  VV+  +R++ +              NI +DER       +   T T+ +       L
Sbjct: 214 SSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 273

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           + A     L L +RS  + N      S+        +
Sbjct: 274 MLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310


>gi|302185188|ref|ZP_07261861.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae
           642]
          Length = 319

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 90/260 (34%), Gaps = 47/260 (18%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQT-----------EEVITENPAKFIN------ 47
            L+  V+  + AL+AG + + +  P    T           E  I   P   +       
Sbjct: 6   TLVLAVLFLLGALIAGYLGIAVSKPAEAPTVVIPPSEPVTTETAIQTPPTPPVEDALRHN 65

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V++   D+     +T + L       +    G         A+ ++ G      +  G  
Sbjct: 66  VVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTLTAGSW 117

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT- 166
           +        G   L+ ++   +RA  + +   +   G + P D+VDV++        P  
Sbjct: 118 LTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPNR 175

Query: 167 -VTVVLSNIRVIAID------------HNIDSDERVLV------GSTATLELTPMQAKAL 207
              VV+  +R++ +              +I++DER+          T T+ +       L
Sbjct: 176 SSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRIHARTVTVAVPQTLVARL 235

Query: 208 VAAQSVAKLSLVLRSIADLN 227
           + A     L L +RS  + N
Sbjct: 236 MLASQTGVLRLAVRSADEGN 255


>gi|92113781|ref|YP_573709.1| Flp pilus assembly CpaB [Chromohalobacter salexigens DSM 3043]
 gi|91796871|gb|ABE59010.1| Flp pilus assembly CpaB [Chromohalobacter salexigens DSM 3043]
          Length = 342

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 20/237 (8%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQ-----TEEVITENPAKFINVLISKGD 54
           M    L  + V  V  AL  G    RL              E  TE P     V+++   
Sbjct: 1   MSPKTLKIVAVGLVIVALALGFTGWRLTQQAMPPSVTESAVESATETPVMRHPVVVATRH 60

Query: 55  LAVGMVVTPNIL--EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112
           LA G  +  + +       P   V D            + L+G ++  P+  G+ IR + 
Sbjct: 61  LAAGTRLGADEVTQAATQTPRLAVVDFPNAVPRSFAKREALEGRVLTRPVDAGEAIREDD 120

Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVT 168
                   L+S +P G RA  + +      GG I P D VDV+       S   R+    
Sbjct: 121 FAL--GSVLASQVPAGYRALAIGVDDVVGGGGFIAPGDRVDVLFQAQAASSGDRRETLAR 178

Query: 169 VVLSNIRVIAIDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            +L ++ V+    ++      D +       TA + +T  QA  L+ A+S  +L L 
Sbjct: 179 RLLDDVLVLGYGDDLRSRAENDDNGGRNGARTAVVAVTDAQAPKLLLAESTGRLRLA 235


>gi|116052339|ref|YP_792650.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587560|gb|ABJ13575.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 303

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   VL++  DL    V+  + L            G  D        + L G  V V + 
Sbjct: 54  ERKPVLVASRDLPALAVIGKDDLSVERL--RTAPVGSYDRP------EALLGKRVWVAVP 105

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160
            G  +    L   G   L+  +   +RA  + +      GG + P D+VDV++       
Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163

Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210
            E  P   +VL  +RV+      A+        + ++      TA L +       L+ A
Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223

Query: 211 QSVAKLSLVLRS 222
                L L +RS
Sbjct: 224 SQAGSLRLAIRS 235


>gi|221066740|ref|ZP_03542845.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
 gi|220711763|gb|EED67131.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
          Length = 352

 Score = 99.2 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 101/280 (36%), Gaps = 61/280 (21%)

Query: 2   KLTRLMGIVVSGVFALVAGIIA---MRLVSPHHVQ--------TEEVITENPAKFINVLI 50
           K+   + +V++   A++A I+     R V+P            + E     PA   +V++
Sbjct: 5   KILAGLLVVLAIALAIMAWIMGRQPQRAVAPAPSSINAIDTNISAEASKPRPAPMHDVVV 64

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +   +A G  +T   L+ V+     V DG +       + +   G      +    P+  
Sbjct: 65  TAKPVAAGQKLTAEDLKLVS-KTAAVADGVL-------SAEAAVGRTTLTALAADAPLLE 116

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------- 163
           ++L+     GLS  +  G+RA ++ +    A G  ++P D VDV                
Sbjct: 117 QQLIS----GLSLQIEPGQRALSIAVKEPMAAGNHVRPGDFVDVYFTLDSKSNAADDKLN 172

Query: 164 -KPTVTVVLSNIRVIAID-----------------------------HNIDSDERVLV-G 192
                 ++L+  RV+A                                N  +D+R     
Sbjct: 173 VDTQTRLLLARSRVLAYGASNVEVPPPTAAQRLKAQQEEEAGNKGQRRNTGNDQRSQQSA 232

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +TA L +     + L  A+   +L+L LR   DL+   + 
Sbjct: 233 NTAVLAVPLDDVERLTLAEKYGQLTLALRHPDDLSVPEAA 272


>gi|330963439|gb|EGH63699.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 357

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 47/277 (16%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47
            L+  V+  + AL+AG + + +  P  V          V  E PA+             N
Sbjct: 44  TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPATPPVEEALRHN 103

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V++   D+     +T   L       +    G  + +      + L G      +  G  
Sbjct: 104 VVVLARDIPAYTPITAEDLVIERL--KVAPPGSFERI------EILVGRSSWRTLTAGTW 155

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165
                    G   L+ ++   +RA  + +   +   G + P D+VDV++        P  
Sbjct: 156 PSESSFDAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 213

Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207
           +  VV+  +R++ I              NI +DER       +   T T+ +       L
Sbjct: 214 SSQVVVPALRILGIGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 273

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           + A     L L +RS  + N       +        +
Sbjct: 274 MLASQTGILRLAVRSAEEGNLQDYWAGETGSRDAAER 310


>gi|73539230|ref|YP_299597.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
 gi|72122567|gb|AAZ64753.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
          Length = 318

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 25/214 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
                  +   V     A    V+++   +  G  +  + L+    P E    G   +V 
Sbjct: 25  WQVGRQPEPPPVSRAAAAVPHPVVVTARAVEAGKPLPADALKVEMLPIE--PTGAYAEVT 82

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
           +      + G +  V I    P+   +L+     GL++ +P+G+RA  + +     VG  
Sbjct: 83  R------VAGQVPLVNIGANVPVLESQLL----AGLAAQIPEGERAVAIAVDEVIGVGNQ 132

Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVLV----------G 192
           ++P D+VDV +V     ++       ++L  +RV+A      ++ +              
Sbjct: 133 VQPGDYVDVFLVLRRDSQEIGASQARMLLPRLRVLAYGSGAVNEPQKQQPEQMMTRREGA 192

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            TA L +   Q   L  AQ   +L + LR+  D 
Sbjct: 193 KTAVLSVPLEQVSKLAMAQHSGRLLMALRNPHDE 226


>gi|313106824|ref|ZP_07793036.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
 gi|310879538|gb|EFQ38132.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
          Length = 299

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   VL++  DL    V+  + L            G  D        + L G  V V + 
Sbjct: 50  ERKPVLVASRDLPALAVIGKDDLSVERL--RTAPVGSYDRP------EALLGKRVWVAVP 101

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160
            G  +    L   G   L+  +   +RA  + +      GG + P D+VDV++       
Sbjct: 102 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 159

Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210
            E  P   +VL  +RV+      A+        + ++      TA L +       L+ A
Sbjct: 160 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 219

Query: 211 QSVAKLSLVLRS 222
                L L +RS
Sbjct: 220 SQAGSLRLAIRS 231


>gi|66047617|ref|YP_237458.1| Flp pilus assembly CpaB [Pseudomonas syringae pv. syringae B728a]
 gi|63258324|gb|AAY39420.1| Flp pilus assembly CpaB [Pseudomonas syringae pv. syringae B728a]
 gi|330969408|gb|EGH69474.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 319

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 98/282 (34%), Gaps = 50/282 (17%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------------- 46
           ++  + +V++ +F L A I A   ++             P++ +                
Sbjct: 1   MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAAVIPPSEPVTTETAIQTPPTPPVED 60

Query: 47  ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T + L       +    G         A+ ++ G      +
Sbjct: 61  ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160
             G  +        G   L+ ++   +RA  + +   +   G + P D+VDV++     +
Sbjct: 113 TAGSWLTESSFDTGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170

Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202
           S    +  VV+  +R++ +              +I++DER+      +   T T+ +   
Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N      ++   +    +
Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGLDAAER 272


>gi|317122041|ref|YP_004102044.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
 gi|315592021|gb|ADU51317.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
          Length = 284

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 19/223 (8%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           V S   AL+AG  A  L              +    + V+++   L   + + P ++   
Sbjct: 9   VASLGVALLAGTSAYVLYL------------DATASLPVVVATQALQAPLKIEPGMVAVS 56

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
             P   V    + D         + G ++R  +  G+P+    +      GLS  L +G+
Sbjct: 57  HVPAAAVHPEAVSDPA------AVVGRVLRRDVEAGEPLLAADVAAGQGAGLSLYLEEGQ 110

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
           +A  +   +   +GG ++P D VDV+ V            +L N+ V+ +          
Sbjct: 111 QAFFIPARLEQGLGGAVEPGDRVDVIFVG-GEGPGAVARTLLENLPVLQVRDEEGRRWEE 169

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
                  + ++  QA+ L  A +  ++ L L   A  +  S+ 
Sbjct: 170 GRPMGVLVAVSRDQAERLAYALTYGRVFLALAPAAARSGGSAG 212


>gi|313902408|ref|ZP_07835811.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
 gi|313467339|gb|EFR62850.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
          Length = 302

 Score = 98.0 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 19/207 (9%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
             S   AL+AG  A             +I  +    + V+++   L   + V  +++  V
Sbjct: 9   AASLGVALLAGTTAY------------LIYLDATASLPVVVATRPLRAPLNVEADMVSVV 56

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
             P   V    + D  +      + G ++R  +  G+P+    +V     GLS+ L + +
Sbjct: 57  PLPAAAVHPRAVGDPSR------VIGHVLRRDVEAGEPLLEADVVAGEGAGLSAFLEEHQ 110

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
           +A  +   +   +GG ++P D VDV+ V            +L N+ V+ +          
Sbjct: 111 QAFFIPTRLEQGLGGAVEPGDRVDVIFVG-GEGPGAVARTLLENLPVLQVRDEEGRRYED 169

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKL 216
                  + +TP +A+ L  A +  ++
Sbjct: 170 GRPLGVLVGVTPAEAERLAYALTYGRV 196


>gi|126733572|ref|ZP_01749319.1| Flp pilus assembly CpaB [Roseobacter sp. CCS2]
 gi|126716438|gb|EBA13302.1| Flp pilus assembly CpaB [Roseobacter sp. CCS2]
          Length = 258

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 95/230 (41%), Gaps = 16/230 (6%)

Query: 14  VFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
             A  A  +  + +      ++ E   +    + +++     DL  G ++T + ++ + +
Sbjct: 2   GLAGFAVYMVNQYMDTQASALEQERQRSATAIRTVDIYAPSRDLTYGELLTADDVQIIKY 61

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKR 130
             +++ +G      +          +VR+P+   +PI   K+ + G   G+++LL  G R
Sbjct: 62  ARDHLPEGVFATEEELFPEGLNTPRVVRLPMQVNEPILTAKVTEAGAPQGITALLDSGMR 121

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL 190
           A  +  SI+ A    ++P D +D+  +  +     +  +V S + +I+++          
Sbjct: 122 AFPLPDSITRAFASELRPTDLIDLYWIGRVGNGPSSSRLVKSRMEIISLE---------- 171

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS-SEDSDVWDV 239
              +  ++++      L    +   LSL      DL     + ++++ DV
Sbjct: 172 --PSVVIQVSQEDFADLQVLSAAGSLSLTPVGRDDLEAGDLTIETNIRDV 219


>gi|116694139|ref|YP_728350.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
 gi|113528638|emb|CAJ94985.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
          Length = 317

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 82/215 (38%), Gaps = 25/215 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
                        + +      V+++   +  G  +    L+    P +    G   +V 
Sbjct: 25  WQVGRQPAQAPAASTSAKPLHAVVVTTQAVEAGKPLAAEALKVEMLPID--PTGAYSEVA 82

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
           +      + G +  V +    P+   +L+     GL++ + +G+RA  + +     VG  
Sbjct: 83  R------VTGQVPLVALGANVPVLESQLL----AGLATQVREGERAVAVSVDEVIGVGNQ 132

Query: 146 IKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAID-------HNIDSDE---RVLVG 192
           ++P D+VDV +V    ++   +    ++LS +RV+A          N   ++   R    
Sbjct: 133 VQPGDYVDVFLVLRRDQQEIPESQARMLLSRLRVLAYGVASVNRPQNAKPEQMMARQEGA 192

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
            TA L +   Q   L  AQ   +L L LR+  D  
Sbjct: 193 KTAVLSVPLEQVSRLAMAQQSGRLLLALRNPQDEA 227


>gi|330873640|gb|EGH07789.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 319

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 47/277 (16%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47
            L+  V+  + AL+AG + + +  P  V          V  E PA+             N
Sbjct: 6   TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPATPPVEEALRHN 65

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V++   D+     +T   L       +    G  + +      + L G      +  G  
Sbjct: 66  VVVLARDIPAYTPITAEDLIIERL--KVAPPGSFERI------ESLVGRSSWRTLTAGTW 117

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165
                    G   L+ ++   +RA  + +   +   G + P D+VDV++        P  
Sbjct: 118 PSESSFDAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 175

Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207
           +  VV+  +RV+ +              NI +DER       +   T T+ +       L
Sbjct: 176 SSQVVVPALRVLGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 235

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           + A     L L +RS  + N       +        +
Sbjct: 236 MLASQTGILRLAVRSAEEDNLQDYWAGETGSRDAAER 272


>gi|296391004|ref|ZP_06880479.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PAb1]
          Length = 303

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   VL++  DL    V+  + L            G  D        + L G  V V + 
Sbjct: 54  ERKPVLVASRDLPALAVIGKDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160
            G  +    L   G   L+  +   +RA  + +      GG + P D+VDV++       
Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163

Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210
            E  P   +VL  +RV+      A+        + ++      TA L +       L+ A
Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223

Query: 211 QSVAKLSLVLRS 222
                L L +RS
Sbjct: 224 SQAGSLRLAIRS 235


>gi|213968017|ref|ZP_03396163.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383667|ref|ZP_07232085.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059964|ref|ZP_07251505.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato
           K40]
 gi|302131630|ref|ZP_07257620.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927360|gb|EEB60909.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 357

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 47/277 (16%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47
            L+  V+  + AL+AG + + +  P  V             E PA+             N
Sbjct: 44  TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPAAIEQPAQTPVTPPVEEALRHN 103

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V++   D+     +T   L       +    G  + +        L G      +  G  
Sbjct: 104 VVVLARDIPAYTPITVEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTLTAGTW 155

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165
                    G   L+ ++   +RA  + +   +   G + P D+VDV++        P  
Sbjct: 156 PSESSFDAGGT--LARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 213

Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207
           +  VV+  +R++ +              NI +DER       +   T T+ +       L
Sbjct: 214 SSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 273

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           + A     L L +RS  + N      S+        +
Sbjct: 274 MLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310


>gi|160897516|ref|YP_001563098.1| Flp pilus assembly protein CpaB [Delftia acidovorans SPH-1]
 gi|160363100|gb|ABX34713.1| Flp pilus assembly protein CpaB [Delftia acidovorans SPH-1]
          Length = 363

 Score = 96.9 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 93/268 (34%), Gaps = 50/268 (18%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN---VLISKGDLAVG 58
           K+   + + ++ V A +A ++  +   P    +     +   + +    V++    +A G
Sbjct: 20  KILAGLLVGLAIVLAGLAWLLGSQPARPVAQPSPAASAQPAPEPVPQHAVVVVAQAIAAG 79

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +    ++    P   V   F        A  ++ G    + +  G P+  ++L+    
Sbjct: 80  QRIGSEDVKLAQLPA-PVPGSF-------AATDDVLGRTTLMALTPGTPLFEQQLLS--- 128

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNI 174
            GL+  L  G+RA  + I    A G  ++P D VDV         +        ++L+  
Sbjct: 129 -GLALQLEPGQRALAIAIREQMAAGHHVRPGDFVDVYFTLDGKSDQAPVDAQTRLLLARS 187

Query: 175 RVIA-------------IDHNIDSD------------------ERVLVGSTATLELTPMQ 203
           RV+A             +      D                  +R     +A L +    
Sbjct: 188 RVLAYGSGSVERPPMPAVQRQAQQDKESAGSSLRRASAADQTGQRPENVQSAVLAVPLDD 247

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSS 231
            + L  A+   +L+L LR+  DL+    
Sbjct: 248 VERLTLAEKFGQLTLALRNPDDLSVPDP 275


>gi|294146465|ref|YP_003559131.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
 gi|292676882|dbj|BAI98399.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
          Length = 302

 Score = 96.9 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 84/242 (34%), Gaps = 35/242 (14%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI--SKGDLAVGMVVTPN 64
           + I V    A     + +R +      T +           VL+  +   +  G  +T  
Sbjct: 9   LTIAVGLTSASAFLALGVRELRNASAATVQGQAAPVRVAAPVLLVRAARAIRTGETITAA 68

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
           ++            G            E+ G +    I     I  + +       L+  
Sbjct: 69  MIR--------NAPGDPTRYPYAATSAEVVGKVATRDIGLHALIARDAVGMESK--LAIR 118

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--------RSLSERKPTVTVVLSNIRV 176
           +P G RA ++D +   AV G+I+P D VDV +V         +    +     +L  ++V
Sbjct: 119 VPMGMRAISIDTTAEIAVAGLIRPGDRVDVQVVYPGADAISGARGSGRSRAQALLQMVQV 178

Query: 177 IAIDHNIDSDER---------------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
           +A+   +   ++                    T TL LTP Q   L  A+++  L+L LR
Sbjct: 179 LAVGEVVVGTQQASGANGGVEGALSSPPPPARTVTLALTPEQVSILSLAKNIGALTLSLR 238

Query: 222 SI 223
           + 
Sbjct: 239 NP 240


>gi|257790303|ref|YP_003180909.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325830168|ref|ZP_08163625.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
 gi|257474200|gb|ACV54520.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325487635|gb|EGC90073.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
          Length = 215

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 16/222 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58
           MK +R   I ++   A  A + A                      + + V ++K D+A G
Sbjct: 1   MKRSRTTIIGIACGLACAACVFAYAQGVRGEADAARAEALARYGGEQLEVCVAKRDIAAG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             V  + +E   +  + +            +  ++ G      IL G+ +   +  D G+
Sbjct: 61  ESVDASAVETRLWVADLLPAEAFR------SSDDVVGKKASSTILAGEVLSERRFRDAGS 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 +P+G  A ++      AVGG +     VDV      S       V+ S + V+A
Sbjct: 115 R---LDVPEGLTALSVPAKDVQAVGGAVAAGSRVDVYATGGTS-----TDVLASGVLVLA 166

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
              +          S  T+ + P   + +VAA    +L   L
Sbjct: 167 TSASAQESTTDAKVSWITVAVAPESVQEIVAAAQKTELYFTL 208


>gi|330938338|gb|EGH41970.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 319

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 91/268 (33%), Gaps = 50/268 (18%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------------- 46
           ++  + +V++ +F L A I A   ++         +   P++ +                
Sbjct: 1   MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAVVIPPSEPVTTETAIQTPPTPPVED 60

Query: 47  ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T + L              +       A+ ++ G      +
Sbjct: 61  ALRHNVVVLAKDIPANTAITADDLTIERL--------KVAPPRSFEAIDKIVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160
             G  +        G   L+ ++   +RA  + +   +   G + P D+VDV++     +
Sbjct: 113 TAGSWLTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170

Query: 161 SERKPTVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
           S    +  VV+  +R++ +                  D  +  +++ +   T T+ L   
Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDLNADERLKQEQQRINARTVTVALPQA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSS 230
               L+ A     L L +RS  + N   
Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQD 258


>gi|107100111|ref|ZP_01364029.1| hypothetical protein PaerPA_01001132 [Pseudomonas aeruginosa PACS2]
 gi|254244884|ref|ZP_04938206.1| hypothetical protein PA2G_05757 [Pseudomonas aeruginosa 2192]
 gi|126198262|gb|EAZ62325.1| hypothetical protein PA2G_05757 [Pseudomonas aeruginosa 2192]
          Length = 303

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   VL++  DL    V+  + L            G  D        + L G  V V + 
Sbjct: 54  ERKPVLVASRDLPALAVIGKDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160
            G  +    L   G   L+  +   +RA  + +      GG + P D+VDV++       
Sbjct: 106 AGSILSAAALEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163

Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210
            E  P   +VL  +RV+      A+        + ++      TA L +       L+ A
Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223

Query: 211 QSVAKLSLVLRS 222
                L L +RS
Sbjct: 224 SQAGSLRLAIRS 235


>gi|254239025|ref|ZP_04932348.1| hypothetical protein PACG_05202 [Pseudomonas aeruginosa C3719]
 gi|126170956|gb|EAZ56467.1| hypothetical protein PACG_05202 [Pseudomonas aeruginosa C3719]
          Length = 303

 Score = 96.1 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   VL++  DL    V+  + L            G  D        + L G  V V + 
Sbjct: 54  ERKPVLVASRDLPALAVIGKDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160
            G  +    L   G   L+  +   +RA  + +      GG + P D+VDV++       
Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163

Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210
            E  P   +VL  +RV+      A+        + ++      TA L +       L+ A
Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223

Query: 211 QSVAKLSLVLRS 222
                L L +RS
Sbjct: 224 SQAGSLRLAIRS 235


>gi|218893397|ref|YP_002442266.1| RcpC [Pseudomonas aeruginosa LESB58]
 gi|218773625|emb|CAW29439.1| RcpC [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score = 96.1 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   VL++  DL    V+  + L            G  D        + L G  V V + 
Sbjct: 54  ERKPVLVASRDLPALAVIGKDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160
            G  +    L   G   L+  +   +RA  + +      GG + P D+VDV++       
Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163

Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210
            E  P   +VL  +RV+      A+        + ++      TA L +       L+ A
Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223

Query: 211 QSVAKLSLVLRS 222
                L L +RS
Sbjct: 224 SQAGSLRLAIRS 235


>gi|15599501|ref|NP_252995.1| RcpC [Pseudomonas aeruginosa PAO1]
 gi|9950527|gb|AAG07693.1|AE004846_10 RcpC [Pseudomonas aeruginosa PAO1]
          Length = 303

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   VL++  DL    V+  + L            G  D        + L G  V V + 
Sbjct: 54  ERKPVLVASRDLPALAVIGRDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160
            G  +    L   G   L+  +   +RA  + +      GG + P D+VDV++       
Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163

Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210
            E  P   +VL  +RV+      A+        + ++      TA L +       L+ A
Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223

Query: 211 QSVAKLSLVLRS 222
                L L +RS
Sbjct: 224 SQAGSLRLAIRS 235


>gi|317489752|ref|ZP_07948251.1| SAF domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911098|gb|EFV32708.1| SAF domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 215

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 16/222 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58
           MK +R   I ++   A  A + A                      + + V ++K D+A G
Sbjct: 1   MKRSRTTIIGIACGLACAACVFAYAQGVRGEADAARAEALARYGGEQLEVCVAKRDIAAG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             V  + +E   +  + +            +  ++ G      IL G+ +   +  D G+
Sbjct: 61  ESVDASAVETRLWVADLLPAEAFR------SSGDVVGKKASSTILAGEVLSERRFRDAGS 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 +P+G  A ++      AVGG +     VDV      S       V+ S + V+A
Sbjct: 115 R---LDVPEGLTALSVPAKDVQAVGGAVAAGSRVDVYATGGTS-----TDVLASGVLVLA 166

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
              +          S  T+ + P   + +VAA    +L   L
Sbjct: 167 TSASAQESTTDAKVSWITVAVAPESVQEIVAAAQKTELYFTL 208


>gi|110833079|ref|YP_691938.1| hypothetical protein ABO_0218 [Alcanivorax borkumensis SK2]
 gi|110646190|emb|CAL15666.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 298

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 103/261 (39%), Gaps = 30/261 (11%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT----------ENPAKFINVLISKG 53
            R + ++ + + ++VA I+A+  ++      +                        ++  
Sbjct: 3   ARWLYMLPALILSVVAVILALVGLARDPSPAKPERAGADEALAQQRAADKPKYTYWVATR 62

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           +L +G +V  +  + +                   A  ++ G  +   +  G+ +    L
Sbjct: 63  ELNIGSIVADDDFQKIDVSAPL--------SSALQADAQVVGQRLFQHVRNGEILSQVHL 114

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTVVLS 172
                  L+  +P   RA  +DI  +SAVGG+++P D VDV++  R   + +PT  ++L 
Sbjct: 115 EAGNR--LAQSVPAQFRAFAIDIDNASAVGGLLEPGDLVDVLVHFRKGQDEQPTSMILLK 172

Query: 173 NIRVIAI-------DHNIDSDERVLVGSTATLELTPMQA-KALVAAQSVAKLSLVLRSIA 224
            I V+A+       D   +  E+    +   +   P +A   L+ A S  +L L + +  
Sbjct: 173 AIEVLAVKGQLQDADKTDEEKEKSRSRNATAVLAIPREALPKLLLADSNGELRLAM-AGE 231

Query: 225 DLNPSSSEDSDVWDVQEEGKE 245
           D+    +E +    V   GKE
Sbjct: 232 DIGSEQNESAGGGAVGLSGKE 252


>gi|149927034|ref|ZP_01915292.1| Flp pilus assembly CpaB [Limnobacter sp. MED105]
 gi|149824255|gb|EDM83475.1| Flp pilus assembly CpaB [Limnobacter sp. MED105]
          Length = 321

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 96/247 (38%), Gaps = 30/247 (12%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
            + M  +S  +V+      +   +   V++S  ++  G  VTP +L+   F       G 
Sbjct: 19  FMVMAFLSGQNVKKGGEAIKTELERFPVVVSTVEIQFGKPVTPEMLKVEKF--AIAPSGA 76

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
             D+       ++ G      I KG P+  +      +G +++ + +G RA  + +  ++
Sbjct: 77  FTDI------GDVIGKKPLFNIGKGLPVTNQYF---ESGAVAAEVREGYRAFALRLDENN 127

Query: 141 AVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAIDHNI-------------D 184
                IK  D+VDV  +   + R   +    +++  +RV+++   +             D
Sbjct: 128 VATAKIKAGDYVDVFSIFKSNSRDIEETISRLIMPKLRVLSVGSQLVNAPETTNAANDKD 187

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
            + R +      +E+       L  AQ+  +L +VLRS    +     D   +   E   
Sbjct: 188 VNNRPVRLKAMMVEVPTGDINTLAIAQTQGELFVVLRSP---DEEELPDMSKYPQPEPIL 244

Query: 245 EIQIIKA 251
           +  ++K 
Sbjct: 245 KPALVKG 251


>gi|283778868|ref|YP_003369623.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
 gi|283437321|gb|ADB15763.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
          Length = 330

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 25/259 (9%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----------PAKFINVLISKGDLAVGM 59
           V  GV A+V G++A  +V     +   V              P   I ++I+K +L    
Sbjct: 9   VTFGVMAIVLGLVAAYIVRQSLQKPPVVAKVVAPVPPAPAPIPDPGIRIVIAKHNLPKHT 68

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           +VT + +E V      V   F              G +    +  G  +R E L+  G G
Sbjct: 69  LVTADDVEVV-----FVPKTFPKLETIMKGPATAQGRITNRALPAGQVMREEYLLGIGEG 123

Query: 120 --GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNI 174
              L+  +P G RA T++     A G  +   D VD+ M    +     +     ++ ++
Sbjct: 124 LPPLAERIPAGYRAVTIEAMNVDAGGKRLSEGDLVDISMTVEGTHPDLGEVLTRTLMKDV 183

Query: 175 RVI--AIDHNIDSDER---VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            V+  A  + I  D+R      G + T+ + P  A  L+ AQ    LS+ L S A+    
Sbjct: 184 MVVDAAAGNPIVLDKRRDQPRSGDSITVAVLPADANKLMVAQKTGVLSVSLCSAAEAPAD 243

Query: 230 SSEDSDVWDVQEEGKEIQI 248
            + DS         KE+ +
Sbjct: 244 DTVDSITRRQLLGLKEVPV 262


>gi|317403506|gb|EFV84009.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54]
          Length = 226

 Score = 95.3 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 75/211 (35%), Gaps = 24/211 (11%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVT-PNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
                 E PAK   V+++   +  G  +    +L+   +         +      ++   
Sbjct: 21  QASAPAEPPAKRYPVVVAAAAIPAGTRIDGARMLKVDQW--------QVALSGSYSSPAP 72

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           L G   RV I  GDP+    L      GL   L  G+RA  + +      G  I P D V
Sbjct: 73  LQGAYARVDIAAGDPLLPSMLAQ----GLGRQLKPGERAVAIAVDEVVGGGNRIAPGDLV 128

Query: 153 DV--VMVRSLSERKPTVTVVLSNIRVIAI---------DHNIDSDERVLVGSTATLELTP 201
           DV  ++ + +  +     ++ S +RV+A          D             TA L +  
Sbjct: 129 DVFFLLEKGVEIQAGQARLLQSRVRVLAYGTASVDGPEDKGTLPGPPGQPARTAVLAVPV 188

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
            Q   L+ A    +L L LR + D     ++
Sbjct: 189 EQVSELLLAGRSGRLQLALRPVGDDGGPDTQ 219


>gi|307295324|ref|ZP_07575163.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
 gi|306878827|gb|EFN10046.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
          Length = 301

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 31/244 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIA--MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           +K    +G+ ++   A +A  +    +  +           +  A  + ++ +   +  G
Sbjct: 5   LKAKLTIGVGLTAATAFLALGVRELRKASAATGENRVTAPAKVAAPTVLLVQAARAIRTG 64

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +T +++   A        G      Q     E+ G +    I     I  + +    N
Sbjct: 65  ETITADMIRNAA--------GDPARFPQAATSAEVVGKVATRDIAMRALIARDAVGVESN 116

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVV 170
             L+  +P G RA ++D +   AV G+++P D VDV +V   ++         +     +
Sbjct: 117 --LAMRVPMGMRAVSIDTTAEIAVAGLVRPGDRVDVQVVYPGADAISGARGAGRSRAQAL 174

Query: 171 LSNIRVIAIDHNIDSDER-----------VLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           L  ++V+A+   +    +            L   T TL LTP Q  AL  A+++  L+L 
Sbjct: 175 LQMVQVLAVGEVVVGARQASGVEGALASPPLPARTVTLALTPEQVSALSLAKNIGALTLS 234

Query: 220 LRSI 223
           LR+ 
Sbjct: 235 LRNP 238


>gi|331012567|gb|EGH92623.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 319

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 91/275 (33%), Gaps = 47/275 (17%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NVL 49
           +  V+  + AL+AG + + +  P            P                     NV+
Sbjct: 8   VLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNVV 67

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           +   D+     +T   L       +    G  + +       +L G      +  G  + 
Sbjct: 68  VLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWLS 119

Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTV 167
                  G   L+ ++   +RA  + +       G + P D+VDV++      S    + 
Sbjct: 120 ENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRSS 177

Query: 168 TVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALVA 209
            VV+  +RV+ +              +I++DER+      +   T T+ ++      L+ 
Sbjct: 178 QVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVSEAVLARLML 237

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           A     L L +RS  + N  +   S+        +
Sbjct: 238 ASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|330892475|gb|EGH25136.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 319

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFI------------- 46
           M     M + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPVATEISTQTPPTPPVED 60

Query: 47  ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G  + +       +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160
             G  +        G   L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202
           S    +  VV+  +RV+ +              +I++DER+      +   T T+ +   
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   S+        +
Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|320322729|gb|EFW78822.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330486|gb|EFW86465.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330873796|gb|EGH07945.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 319

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFI------------- 46
           M     M + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60

Query: 47  ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G  + +       +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160
             G  +        G   L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202
           S    +  VV+  +RV+ +              +I++DER+      +   T T+ +   
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   S+        +
Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|289625313|ref|ZP_06458267.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647838|ref|ZP_06479181.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867147|gb|EGH01856.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330871035|gb|EGH05744.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 319

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFI------------- 46
           M     M + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60

Query: 47  ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G  + +       +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160
             G  +        G   L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202
           S    +  VV+  +RV+ +              +I++DER+      +   T T+ +   
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   S+        +
Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|258515698|ref|YP_003191920.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779403|gb|ACV63297.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
          Length = 247

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 37/246 (15%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K +    + ++ + A+ AG + M+ +  +               + V+++K ++     +
Sbjct: 6   KKSSSYLLFITLIAAVAAGFLGMQTIRKYTA------------VLPVVVAKVEIPAYTPI 53

Query: 62  TPN----ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           T      +L     P+  +  G           Q L G + R  I  G P+  + L   G
Sbjct: 54  TEENEKEMLAVENIPKAAIKQGMF------PNSQNLIGKVTRTVIPAGYPVSKDFLAIEG 107

Query: 118 NGGL-----SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---LSERKPTVTV 169
            G L     S       RA  + +   +A+ G I P D VDVV          ++P    
Sbjct: 108 PGSLLTTQISQFKDPKLRATPVTVQGVNALDGKIMPGDRVDVVGNMKLPMGGLQQPVSQT 167

Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-DLNP 228
           +   + VIA+             +   L LTP QA+ +  A++   + L L     D N 
Sbjct: 168 IGVQVPVIAV------TGEPNKPTGVILGLTPQQAQDVGFAETAGTIKLSLNPYQPDTNA 221

Query: 229 SSSEDS 234
           + +  +
Sbjct: 222 ARTTPT 227


>gi|329943872|ref|ZP_08292143.1| Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328531578|gb|EGF58414.1| Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 362

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 26/254 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  GI++   F +V  ++   LV    +     +         V+    D+     
Sbjct: 114 MNPRQRKGIIL-IFFTIVGALVTFGLV----LSYVNSVASQVGPMTTVVTLTRDVESLTS 168

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   +E    P+    +G +       + +E  G++      KGD ++   L       
Sbjct: 169 LTEADVEVKEVPKRWAPNGALH------SFKETSGLVTAGTYHKGDMLQSGMLESPPG-- 220

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-PTVTVVLSNIRVIAI 179
               L  G R   + +   + V G I   + VD++        K     VV+ N  ++ +
Sbjct: 221 ----LQSGYREVAIIVDAETGVAGKISSGETVDIIATVEDPNTKAQQANVVVENAVILDV 276

Query: 180 DHNIDSDERVLVGS-------TATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231
               D  E+   G+         T  L+   A  +  A+S A K+ L LR   D +    
Sbjct: 277 GVTTDIKEKDESGNFTDEKGVPVTFALSTQDALKVAYAESFAVKVRLALRGEGDDSALGP 336

Query: 232 EDSDVWDVQEEGKE 245
           + +           
Sbjct: 337 DSTQYGGGSAPAPA 350


>gi|330989177|gb|EGH87280.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 319

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 89/275 (32%), Gaps = 47/275 (17%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NVL 49
           +  V+  + AL+AG + + +  P            P                     NV+
Sbjct: 8   VLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPVATEISTQTPPTPPVEDALRHNVV 67

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           +   D+     +T   L       +    G  + +       +L G      +  G  + 
Sbjct: 68  VLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWLS 119

Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTV 167
                  G   L+ ++   +RA  + +       G + P D+VDV++      S    + 
Sbjct: 120 ENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRSS 177

Query: 168 TVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALVA 209
            VV+  +RV+ +              +I++DER+      +   T T+ +       L+ 
Sbjct: 178 QVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPETLLARLML 237

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           A     L L +RS  + N      S+        +
Sbjct: 238 ASQTGVLRLAVRSADEGNIQDYWASEAGSRDAAER 272


>gi|298488960|ref|ZP_07006983.1| Flp pilus assembly protein RcpC/CpaB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156458|gb|EFH97555.1| Flp pilus assembly protein RcpC/CpaB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 319

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 47/275 (17%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NVL 49
           +  V+  + AL+AG + + +  P            P                     NV+
Sbjct: 8   VLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNVV 67

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           +   D+     +T   L       +    G  + +       +L G      +  G  + 
Sbjct: 68  VLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWLS 119

Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTV 167
                  G   L+ ++   +RA  + +       G + P D+VDV++      S    + 
Sbjct: 120 ENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRSS 177

Query: 168 TVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALVA 209
            VV+  +RV+ +              +I++DER+      +   T T+ +       L+ 
Sbjct: 178 QVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEALLARLML 237

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           A     L L +RS  + N  +   S+        +
Sbjct: 238 ASQTGVLRLAVRSADEGNLQNYWPSEAGSRDAAER 272


>gi|71737039|ref|YP_276549.1| CpaB family Flp pilus assembly protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557592|gb|AAZ36803.1| Flp pilus assembly protein CpaB family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 313

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 91/276 (32%), Gaps = 47/276 (17%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NV 48
           ++  V+  + AL+AG + + +  P            P                     NV
Sbjct: 1   MVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNV 60

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           ++   D+     +T   L       +    G  + +       +L G      +  G  +
Sbjct: 61  VVLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWL 112

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPT 166
                   G   L+ ++   +RA  + +       G + P D+VDV++      S    +
Sbjct: 113 SENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRS 170

Query: 167 VTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALV 208
             VV+  +RV+ +              +I++DER+      +   T T+ +       L+
Sbjct: 171 SQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEALLARLM 230

Query: 209 AAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
            A     L L +RS  + N  +   S+        +
Sbjct: 231 LASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 266


>gi|257483348|ref|ZP_05637389.1| CpaB family Flp pilus assembly protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 319

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 47/275 (17%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NVL 49
           +  V+  + AL+AG + + +  P            P                     NV+
Sbjct: 8   VLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNVV 67

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           +   D+     +T   L       +    G  + +       +L G      +  G  + 
Sbjct: 68  VLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWLS 119

Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTV 167
                  G   L+ ++   +RA  + +       G + P D+VDV++      S    + 
Sbjct: 120 ENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRSS 177

Query: 168 TVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALVA 209
            VV+  +RV+ +              +I++DER+      +   T T+ +       L+ 
Sbjct: 178 QVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEALLARLML 237

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           A     L L +RS  + N  +   S+        +
Sbjct: 238 ASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|152980658|ref|YP_001355007.1| CpaB pilus assembly protein [Janthinobacterium sp. Marseille]
 gi|151280735|gb|ABR89145.1| CpaB pilus assembly protein [Janthinobacterium sp. Marseille]
          Length = 317

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 73/223 (32%), Gaps = 37/223 (16%)

Query: 29  PHHVQTEEVITENPAKFIN--VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
                  EV T N  K     V+ +   L  G  +T + ++ V  P        +     
Sbjct: 29  RPPPPPVEVKTANMPKTAEYAVVAAAKKLEKGKQITADSVKLVTLP--------MTANGT 80

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMI 146
                ++ G +  V I     +  E+LV     GL+  L +G+RA  + +     VG  I
Sbjct: 81  YANAGDVIGKIPAVEIAADTLVTEEQLVK----GLALKLAEGERAVAISVDEVVGVGNRI 136

Query: 147 KPNDHVDVVMVRSLSERKPT--VTVVLSNIRV-----------------IAIDHNIDSDE 187
              D+VDV                ++ S  RV                 +A +      +
Sbjct: 137 AAGDYVDVFFTLKKGNDVDIGQSRLLASRRRVLTYGGATMGEAQASPNALANNQTAQQSQ 196

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
                 TA L     Q   L+ A    +L+LVLR   D   + 
Sbjct: 197 ----ARTAVLATPIDQVNQLLLASQNGRLTLVLRHPDDTGVAD 235


>gi|260768626|ref|ZP_05877560.1| putative pilus assembly protein [Vibrio furnissii CIP 102972]
 gi|260616656|gb|EEX41841.1| putative pilus assembly protein [Vibrio furnissii CIP 102972]
          Length = 312

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 86/222 (38%), Gaps = 16/222 (7%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            + + +    +FA+    +   +++ +    +      P +  +  +   DL  G ++T 
Sbjct: 8   AKALKLSAMILFAIAVVFLVSGMLTANPSPPKNAAVSKPIEQYDAWVVVDDLTQGTLITR 67

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           ++++     +                     G  V+  ++ G  +  + LV   N  +  
Sbjct: 68  DMMKPTRVTQ--------LGDSLIQNPDVALGRRVKQDVIAGAYLTSKMLVP--NRPVID 117

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSNIRVIAID 180
            LP+  RA  +       VGG ++P DHVDV+++   ++    +T    + S++ V+AI 
Sbjct: 118 DLPENYRAIAIRAGEVLTVGGYLQPGDHVDVMLLLKPNKESGAITSARRIASDLMVLAIG 177

Query: 181 HN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                 D  ER     +  L +    A  L+ A +  ++ L 
Sbjct: 178 QQQNGTDKFEREAQAKSVVLAVHESLAPVLLLADASGEIRLA 219


>gi|148556417|ref|YP_001263999.1| Flp pilus assembly protein CpaB-like protein [Sphingomonas
           wittichii RW1]
 gi|148501607|gb|ABQ69861.1| Flp pilus assembly protein CpaB-like protein [Sphingomonas
           wittichii RW1]
          Length = 293

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 33/244 (13%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVGMVVTPN 64
           + +V   +FAL+  I+  R +          +             I+   +  G  ++P+
Sbjct: 8   ITVVAGLLFALLFVILGFRELGRPSPSRPLPVAAIVESGPPAAFAIAARRIETGETLSPD 67

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
           ++     P+               +  E  G +   PI       + +        L+  
Sbjct: 68  LVRNGPAPKAL--------QAATASPAEAVGKVATQPIAA--GAAIPRAAIAAEDKLALR 117

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLSNIRV 176
           +P G RA ++D +   AV G+++P D VD+ +V   ++               +L  + V
Sbjct: 118 VPVGMRAISIDTTSEIAVAGLVRPGDRVDIQVVYPGTDAIAGLRGPGGSQAATLLQMVEV 177

Query: 177 IAIDHNI-------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           +A+   +               + +       TL LTP     L  A++   + L LR+ 
Sbjct: 178 LAVGQVVIGSGPANEDKSVSSFESQPPQARNVTLALTPADVSTLSLAKARGAIYLSLRNP 237

Query: 224 ADLN 227
           AD  
Sbjct: 238 ADRE 241


>gi|152989266|ref|YP_001350208.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PA7]
 gi|150964424|gb|ABR86449.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PA7]
          Length = 303

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 74/220 (33%), Gaps = 31/220 (14%)

Query: 28  SPHHVQTEEVITENPA--------KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
           +P  VQ   V              +   VL++  DL    V+  + L            G
Sbjct: 30  APSTVQVPAVAPATSVVDASLEKLERKPVLVASRDLPALAVIGKDDLVVEML--RTAPAG 87

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139
             D        + L G  V V +  G  +    L   G   L+  +   +RA  + +   
Sbjct: 88  SYDKP------EALLGKRVWVAVPAGSILSAATLEPGGP--LARTIRADERAMAIAVDEV 139

Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVI------AID----HNIDSD 186
              GG + P D+VDV++         + +   +VL  +RV+      A+         ++
Sbjct: 140 IGGGGFVLPGDYVDVMLFVRDERGGESTSLAQLVLPGVRVLTYGERIAVGGDGQDRSATE 199

Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           +      TA L +       L+ A     L L +RS  + 
Sbjct: 200 KDPRPPRTAVLAVPAEGVARLMLASQAGALRLAIRSQDEE 239


>gi|198284414|ref|YP_002220735.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667886|ref|YP_002427082.1| hypothetical protein AFE_2705 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248935|gb|ACH84528.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218520099|gb|ACK80685.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 323

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 43/288 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV---QTEEVITENPAKFINVLISKGDLAV 57
           M  T  + I +  + A+  G+ A  +  P  V   +T     + P   + V+++   L+ 
Sbjct: 1   MGNTAKIVIAILVLLAIALGVSAYLVSQPSPVVQSKTSAAAPQQPTAGVAVVVAAKTLSA 60

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  + P+ ++ + +PE     G   +         + G + +V I  G P+    L+   
Sbjct: 61  GFPIPPDGVKVLHYPE--FPAGAFHETAH------VVGKVPQVNIGMGAPVMSSNLLS-- 110

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVL 171
             GL++ +P+G  A  +D++ + AVG  ++P D+VDV    +  +            ++L
Sbjct: 111 --GLATQVPEGDVAMAIDVNKAIAVGDHLQPGDYVDVFTTLAGDQMTMHGGWPTQSRLLL 168

Query: 172 SNIRVIAIDHNI----------------------DSDERVLVGSTATLELTPMQAKALVA 209
           +++RV+A+                           +       ST  L++    A  L  
Sbjct: 169 ADLRVLAVGPQTVVRHVAQGEPSAFGPAAGSAGSSNQPPREPPSTVVLQVPVASAATLAL 228

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           A     L L LR+  D     +             E+ + +    + K
Sbjct: 229 ASGQGHLLLALRNPKDHTLPDTGAFPTPSPALPPAELPVAQRKAALAK 276


>gi|237798382|ref|ZP_04586843.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021234|gb|EGI01291.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 318

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 87/264 (32%), Gaps = 47/264 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFI------------- 46
           M     M + V  +  AL+AG + + +     V      +                    
Sbjct: 1   MSSRITMVLAVLFLLGALIAGYLGIVVSRQAEVPAAVTQSAPSPAEQAPQAPAPQPVEDA 60

Query: 47  ---NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
              NV++   D+     +T + +       +    G        ++++ L G      + 
Sbjct: 61  LRHNVVVVARDIPAYTPITADDVVIERL--KVAPPGSF------DSVERLVGRSSWRTLN 112

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            G  +        G   L+ ++   +RA  + +    +  G + P D+VDV++       
Sbjct: 113 AGTWLSESSFDAGGT--LARMIRPYERALALQVDEVISASGQLSPGDYVDVLLYLPEDTL 170

Query: 164 KPT--VTVVLSNIRVIAID------------HNIDSDERVL------VGSTATLELTPMQ 203
            P     VV+  +R++ I              NI +DER+          T T+ +    
Sbjct: 171 NPNRSSQVVVPALRILGIGGLLGTDHDGKPVQNISADERLRQEQLRANARTVTVAVPEAL 230

Query: 204 AKALVAAQSVAKLSLVLRSIADLN 227
              L+ A     L L +RS  + N
Sbjct: 231 VSRLMLASQTGVLRLAVRSADEGN 254


>gi|269126095|ref|YP_003299465.1| Flp pilus assembly protein CpaB [Thermomonospora curvata DSM 43183]
 gi|268311053|gb|ACY97427.1| Flp pilus assembly protein CpaB [Thermomonospora curvata DSM 43183]
          Length = 245

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 24/219 (10%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             RL+ IVV+   A +  ++    V     +            +NVL++   +  G  +T
Sbjct: 2   NRRLITIVVAVALAGLGSLMVYGYVHGADERALRGQRA-----VNVLVAAKAIPAGTAIT 56

Query: 63  ----PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
                       FP  +V D  +  +   ++      ++   P+  G+ IR   LV RG+
Sbjct: 57  RLVADGYAVTRKFPASSVPDDVLSRIEDVDSD-----MVTGSPVRPGELIRKPLLVPRGS 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVL 171
              +  +P+GK A T++++    V G + P   V V + R + +             +++
Sbjct: 112 SQ-TFTVPEGKIALTVELTDPQRVAGHVVPGSKVAVFLTRRILDSNGRPRGELTETRLLM 170

Query: 172 SNIRVIAIDHNIDSDERVLV--GSTATLELTPMQAKALV 208
           S I V+ I               S  TL +T  QA+ LV
Sbjct: 171 SGIDVLWIGPAPKDKSAAKTEGSSLVTLAVTQRQAEKLV 209


>gi|227811503|ref|YP_002811514.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CDC 684]
 gi|254687774|ref|ZP_05151630.1| Flp pilus assembly protein CpaB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739264|ref|ZP_05196966.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Western
           North America USA6153]
 gi|254745060|ref|ZP_05202737.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Kruger B]
 gi|254756463|ref|ZP_05208492.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Vollum]
 gi|227008105|gb|ACP17847.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CDC 684]
          Length = 286

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 86/237 (36%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +  ++L     P + +    +         +E+ G       PI +   +   K+V +  
Sbjct: 54  IKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + +   ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|302388996|ref|YP_003824817.1| SAF domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302199624|gb|ADL07194.1| SAF domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 214

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 33/228 (14%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            + + IV+S + A     +  R                  + I V+++  D+  G  +T 
Sbjct: 6   RKTVLIVISLLLATGLTFLQYRYFKSM---------AESDRKIQVVVAAADIEAGEDIT- 55

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
             +     P+      ++  ++ PN   E      +V I  G  I  E +          
Sbjct: 56  GRIGLKTIPQSA----YVKGMYLPN---EKVSGYAKVNISAGSYILKEMVSTEKVP---- 104

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179
           ++  G R  T+ ++++S++ G I+P D VDV  V    E+     V+   +++  +    
Sbjct: 105 VVENGMRRVTIGVNLTSSLAGKIRPGDVVDVGWVPKEQEKGAGSKVIAQKVQIYDVVNKM 164

Query: 180 --DHNIDSDERV------LVGSTATLELTPMQAKALVAAQSVAKLSLV 219
             D     D++       L+ S  TL +TP QA  +   + +  L LV
Sbjct: 165 GEDTTKKGDKKNQYEKDMLIPSAVTLIVTPEQAVMIKYHEVIGSLFLV 212


>gi|104779899|ref|YP_606397.1| Flp pilus assembly protein CpaB [Pseudomonas entomophila L48]
 gi|95108886|emb|CAK13582.1| putative Flp pilus assembly protein CpaB [Pseudomonas entomophila
           L48]
          Length = 316

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 32/220 (14%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
           P                  +++ +  +   + +T + +       + V  G         
Sbjct: 45  PAPTPVAVPAQPPEPPRSPIVVLRKAVPANVPLTEDDVLVERL--QVVPAGAFQ------ 96

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
            + ++ G     P+  G  +       +  G L+ ++   +RA  + +       G ++P
Sbjct: 97  QLDQVLGRSSSRPLAAGSWLDDSSF--QAGGPLARMIRANERAVAVAVDDVIGAAGQLRP 154

Query: 149 NDHVDVVMVRSLSERKP--TVTVVLSNIRVIAID-----------------HNIDSDERV 189
            D VDV++        P  +  VVL  +RV+++D                      D++ 
Sbjct: 155 GDFVDVLLFLREENNNPQSSAQVVLPALRVLSVDHQTGLANDGRPAQTAEEQKARRDQQA 214

Query: 190 LVG---STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           L      T  L +    A  L+ A     L L +RS  + 
Sbjct: 215 LNSNATRTVGLAVPEALASRLMLAAQAGTLRLAVRSADEQ 254


>gi|228969250|ref|ZP_04130128.1| hypothetical protein bthur0004_59710 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790443|gb|EEM38166.1| hypothetical protein bthur0004_59710 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 286

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 41/240 (17%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI      +           EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L +G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKEGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVIEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|228912543|ref|ZP_04076208.1| hypothetical protein bthur0013_66020 [Bacillus thuringiensis IBL
           200]
 gi|228847113|gb|EEM92102.1| hypothetical protein bthur0013_66020 [Bacillus thuringiensis IBL
           200]
          Length = 286

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 87/237 (36%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +   +L     P + +    +         +E+ G       PI +   +   K+V + +
Sbjct: 54  IKEEMLVERTLPGDAIPPNALR-----VNKKEVVGKWTNDGQPITENSYLFKNKVVKKED 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              SS+  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSSILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|89897409|ref|YP_520896.1| hypothetical protein DSY4663 [Desulfitobacterium hafniense Y51]
 gi|89336857|dbj|BAE86452.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 286

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 30/241 (12%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  +V  ++    ++P   Q+        ++  +V+    ++  G  +T ++ + V 
Sbjct: 21  VLGVICIVLSLVICFALTPLFNQSV-------SQKASVVRVVKEIKAGDAITKDMFQTVE 73

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
             E N+ +  I           + G      ++ GD I   KL D      + L  L   
Sbjct: 74  VGEYNLPEDVIK------QQDSVLGKYAVADLVPGDYILSAKLSDTPASENAYLYNLSGD 127

Query: 129 KRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ I + +  + G +   D V V+      +    +   L+ + VI +        
Sbjct: 128 KQAISVSIKNFAGGLSGKLISGDIVSVIAPDYKKQGSTVIPTELTYVEVIGVTASTGYDT 187

Query: 180 ---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSSSEDS 234
              +   D DE+ L   T TL ++P QAK L   +S  KL L L  R   +     +E  
Sbjct: 188 DTGEQTKDEDEKQLPA-TVTLLVSPEQAKILAELESDGKLHLSLVYRGSKENAAKFTELQ 246

Query: 235 D 235
           D
Sbjct: 247 D 247


>gi|228925187|ref|ZP_04088297.1| hypothetical protein bthur0011_60590 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834526|gb|EEM80055.1| hypothetical protein bthur0011_60590 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 286

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +  ++L     P + +    +         +E+ G       PI +   +   K+V +  
Sbjct: 54  IKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|47568973|ref|ZP_00239664.1| conserved hypothetical protein protein [Bacillus cereus G9241]
 gi|301068118|ref|YP_003786889.1| hypothetical protein BACI_pCIXO100760 [Bacillus anthracis CI]
 gi|47554357|gb|EAL12717.1| conserved hypothetical protein protein [Bacillus cereus G9241]
 gi|300379208|gb|ADK08111.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 286

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +  ++L     P + +    +         +E+ G       PI +   +   K+V +  
Sbjct: 54  IKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|94312585|ref|YP_585794.1| pilus assembly protein [Cupriavidus metallidurans CH34]
 gi|93356437|gb|ABF10525.1| pilus assembly protein [Cupriavidus metallidurans CH34]
          Length = 319

 Score = 90.3 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 26/251 (10%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +V+ V  ++AG++A+  +            +       V+++   +  G  +  + L+ +
Sbjct: 8   IVAIVLLVLAGLLALLALQAARHTAAPAPAQGVVATHAVVVTTRAVPAGKPLPADALQVL 67

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
             P +    G   DV +      + G +  V +    P+   +L+     GL+  +P G 
Sbjct: 68  QLPID--PGGAYQDVAR------VAGQVPLVNLGANVPVLESQLL----AGLARQIPDGA 115

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAIDHNIDSD 186
           RA  + +     VG  ++P D VDV +V     +   +    ++LS +RV+A      ++
Sbjct: 116 RAMAVAVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLLSRLRVLAYGTGAVNE 175

Query: 187 ERVLVG----------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-PSSSEDSD 235
                G           TA L +   Q   LV AQ   +L L LR+  D   PS    +D
Sbjct: 176 APKQQGEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTDEAMPSDGMFAD 235

Query: 236 VWDVQEEGKEI 246
              V +    +
Sbjct: 236 PPGVLQARAGV 246


>gi|330953052|gb|EGH53312.1| Flp pilus assembly protein CpaB [Pseudomonas syringae Cit 7]
          Length = 319

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 55/283 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------------- 46
           ++  + +V++ +F L A I     ++         +   P   +                
Sbjct: 1   MSSRITLVLAVLFLLGALIAGYLGIAVSKQAEAPAVVIPPNGPVTTVTTIQTPPTPPVED 60

Query: 47  ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV+    D+     +T + L       +    G         A+ ++ G      +
Sbjct: 61  AVRHNVVGLARDVPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160
             G  +        G   L+ ++   +RA  + +   +   G + P D+VDV++     +
Sbjct: 113 TAGSWLTESSFDTGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170

Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202
           S    +  VV+  +R++ +              +I++DER+      +   T T+ +   
Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
               L+ A     L L +RS  + N       D W     G E
Sbjct: 231 LVARLMLASQSGVLRLAVRSADEGNL-----QDYWANDAGGPE 268


>gi|208702085|ref|YP_002267403.1| Flp pilus assembly protein CpaB [Bacillus cereus H3081.97]
 gi|208657940|gb|ACI30310.1| Flp pilus assembly protein CpaB [Bacillus cereus H3081.97]
          Length = 286

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 41/240 (17%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI      +           EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VNKKEIVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KKELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|228950016|ref|ZP_04112204.1| hypothetical protein bthur0007_60880 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809663|gb|EEM56096.1| hypothetical protein bthur0007_60880 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 286

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 88/237 (37%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKSSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +  ++L     P + +    +       + +++ G       PI +   +   K+V +  
Sbjct: 54  IKEDMLVERTLPGDAIPPNALR-----VSKRDVVGKWTNDGHPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSN 173
              S++  L  G+ A  + + + ++ G  I PN +VD+   + + E      +   +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVIFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|167845918|ref|ZP_02471426.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           B7210]
          Length = 207

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 26/208 (12%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I    P+   +L+     GL+  +  G+R
Sbjct: 72  TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLELTPMQA 204
             ++ D           TA L +   Q 
Sbjct: 180 ATVERDGTPGPTGAGARTAVLAVPTAQV 207


>gi|330959994|gb|EGH60254.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 319

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 30/225 (13%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
             Q         A   +V++   D+     +TP  L       +    G  D +      
Sbjct: 49  PPQAVPTPPVEDALRHDVVVVARDVPAYTPITPEDLLIERL--KVAPPGSFDTI------ 100

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
            +L G      +  G  +        G   L+ ++   +RA  + +       G + P D
Sbjct: 101 DKLVGRSSWRTLSAGTWLSESNFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGD 158

Query: 151 HVDVVMVRSLSERKPT--VTVVLSNIRVIAI------------------DHNIDSDERVL 190
           +VDV++  +     P     VV+  +RV+++                  D  +  ++R  
Sbjct: 159 YVDVLLYLAEDTANPVRSTQVVVPALRVLSVGELLGPDRNGKPVQHVTADERLQQEQRRS 218

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
              T ++ +  +    L+ A     L L +RS  + N       D
Sbjct: 219 SARTVSVAVPEVLLGRLMLASQTGVLRLAVRSADEGNLQDYWAGD 263


>gi|44004393|ref|NP_982061.1| hypothetical protein BCE_A0054 [Bacillus cereus ATCC 10987]
 gi|190015216|ref|YP_001966616.1| hypothetical protein pPER272_AH820_0071 [Bacillus cereus]
 gi|190015481|ref|YP_001966942.1| hypothetical protein pPER272_0071 [Bacillus cereus]
 gi|190015561|ref|YP_001967244.1| hypothetical protein BcAH187_pCER270_0101 [Bacillus cereus]
 gi|217956754|ref|YP_002335848.1| Flp pilus assembly protein CpaB [Bacillus cereus AH187]
 gi|218848261|ref|YP_002454968.1| Flp pilus assembly protein CpaB [Bacillus cereus AH820]
 gi|229020887|ref|ZP_04177586.1| hypothetical protein bcere0030_53460 [Bacillus cereus AH1273]
 gi|229027753|ref|ZP_04183934.1| hypothetical protein bcere0029_59380 [Bacillus cereus AH1272]
 gi|229035191|ref|ZP_04189127.1| hypothetical protein bcere0028_52090 [Bacillus cereus AH1271]
 gi|229113409|ref|ZP_04242860.1| hypothetical protein bcere0018_55820 [Bacillus cereus Rock1-15]
 gi|229142563|ref|ZP_04271044.1| hypothetical protein bcere0013_56190 [Bacillus cereus BDRD-ST26]
 gi|229164946|ref|ZP_04292761.1| hypothetical protein bcere0009_56190 [Bacillus cereus R309803]
 gi|42741459|gb|AAS44904.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|116584468|gb|ABK00585.1| hypothetical protein BcAH187_pCER270_0101 [Bacillus cereus]
 gi|116584892|gb|ABK01007.1| hypothetical protein pPER272_AH820_0071 [Bacillus cereus]
 gi|116585162|gb|ABK01271.1| hypothetical protein pPER272_0071 [Bacillus cereus]
 gi|217068624|gb|ACJ82872.1| Flp pilus assembly protein CpaB [Bacillus cereus AH187]
 gi|218540312|gb|ACK92708.1| Flp pilus assembly protein CpaB [Bacillus cereus AH820]
 gi|228618530|gb|EEK75541.1| hypothetical protein bcere0009_56190 [Bacillus cereus R309803]
 gi|228640857|gb|EEK97207.1| hypothetical protein bcere0013_56190 [Bacillus cereus BDRD-ST26]
 gi|228670023|gb|EEL25415.1| hypothetical protein bcere0018_55820 [Bacillus cereus Rock1-15]
 gi|228728083|gb|EEL79123.1| hypothetical protein bcere0028_52090 [Bacillus cereus AH1271]
 gi|228733545|gb|EEL84348.1| hypothetical protein bcere0029_59380 [Bacillus cereus AH1272]
 gi|228740419|gb|EEL90718.1| hypothetical protein bcere0030_53460 [Bacillus cereus AH1273]
          Length = 286

 Score = 89.6 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 41/240 (17%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI      +           EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VNKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|83747918|ref|ZP_00944950.1| SIGNAL PEPTIDE HYPOTHETICAL; CpaB2 [Ralstonia solanacearum UW551]
 gi|207739459|ref|YP_002257852.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
 gi|83725451|gb|EAP72597.1| SIGNAL PEPTIDE HYPOTHETICAL; CpaB2 [Ralstonia solanacearum UW551]
 gi|206592835|emb|CAQ59741.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
          Length = 277

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 35/204 (17%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           EN      V+++   L  G  +T + +   + P          D        ++ G    
Sbjct: 41  ENGKTLYPVVVTVKPLEAGKPITADQVAVESLPIN--PADAFADA------GKVVGREPI 92

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            PI  G P+   +L    + GL+  +  G+RA  + +     VG  + P D+VDV +V  
Sbjct: 93  TPIGTGVPLIGSQL----SSGLALQVAPGQRAVAITVDEVVGVGNRVMPGDYVDVFLVLR 148

Query: 160 LSERK---PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
              ++       ++L ++RV+A+              + +          L  A    +L
Sbjct: 149 KDGQEIDDSKARLLLPHLRVLAV-----------PVESVS---------QLAIAHQSGRL 188

Query: 217 SLVLRSIADLNPSSSEDSDVWDVQ 240
            L LR+ +D    +    D   + 
Sbjct: 189 LLALRNPSDDAEPTVRPQDAPALA 212


>gi|326943576|gb|AEA19469.1| hypothetical protein CT43_P281127 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 286

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +  ++L     P + +    +         +E+ G       PI +   +   K+V +  
Sbjct: 54  IKEDMLVERTLPGDAIPPNVLR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|167582064|ref|ZP_02374938.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           TXDOH]
          Length = 192

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I+   P+   +L+     GL+  +  G+R
Sbjct: 72  TPAPI--AGAFPNPTL------VTGRIPANDIVAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERV 189
              D D   
Sbjct: 180 ATADRDGTP 188


>gi|328952515|ref|YP_004369849.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM
           11109]
 gi|328452839|gb|AEB08668.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM
           11109]
          Length = 357

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV--TVVLS 172
                 L+  +P G RA ++ +   + V   +   D VDV+    L     T    +VL 
Sbjct: 47  PPKAVNLTENIPVGMRAVSIKVDEVTGVSRKVIKGDWVDVLATTPLPGSPHTSVARLVLD 106

Query: 173 NIRV----IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
            ++V    +  D    S ++     T TL +TP Q   L+AA S AK+SL+ R   D  P
Sbjct: 107 RVQVFDVTLEADTKGQSKQKGEKDWTVTLLVTPDQGATLLAAASQAKISLLARQANDARP 166

Query: 229 SS 230
            +
Sbjct: 167 HN 168



 Score = 73.8 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 21/155 (13%)

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----------------R 158
           + +G  +  +  G RA T+ +  +  +   ++  D VDV++                   
Sbjct: 185 KPDGDATDWIHPGMRAVTLKVRDTDGICANLRRGDRVDVLLTCPFSRFASGGNVAAGAQG 244

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVA---AQSVA 214
           ++++ +     +L ++ V+  +  ++ + E        TL++TP  A+ +     A S  
Sbjct: 245 TVTDYEMVTRTLLQDVEVLVSEKGLEPNTEDNEPVRLVTLQMTPHDAEKVTCALDATSKD 304

Query: 215 KLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249
            + LV R+  D     S   ++  +    KE   I
Sbjct: 305 IIRLVSRNKRDRRLVCSPGQELSSLLMRKKEYNRI 339


>gi|139438675|ref|ZP_01772159.1| Hypothetical protein COLAER_01160 [Collinsella aerofaciens ATCC
           25986]
 gi|133775755|gb|EBA39575.1| Hypothetical protein COLAER_01160 [Collinsella aerofaciens ATCC
           25986]
          Length = 224

 Score = 89.2 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 81/216 (37%), Gaps = 22/216 (10%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF----INVLISKGDLAVGMVVTPN 64
           I +S V  ++A ++ M   S    Q E+V  E  AK+    + V ++  D+ VG  +   
Sbjct: 12  IAISLVAGVLAALLCMVYGSSIRSQAEQVQAETLAKYGGDRVEVCVAARDIDVGETLDET 71

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            +    +    +    + +      ++++ G +    I K   I         +  L   
Sbjct: 72  NVITQEWLTSLLPRDAVTE------LRQVRGDVTTSRIPKNAVICNV-YTKAESHKL--E 122

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           +PKGK A ++ +    +VGG      +VDV + +     +     V        ID + D
Sbjct: 123 VPKGKVAVSVAVDAEHSVGGATGVGSYVDVYVQKDGVTDRLCGAYV--------IDTSED 174

Query: 185 SD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           S   R       TL   P   K L+ A     +SL 
Sbjct: 175 SGATREGKIEWVTLAADPEDVKELLGASGKGTVSLT 210


>gi|225871553|ref|YP_002752911.1| Flp pilus assembly protein CpaB [Bacillus cereus 03BB102]
 gi|225785587|gb|ACO25805.1| Flp pilus assembly protein CpaB [Bacillus cereus 03BB102]
          Length = 286

 Score = 89.2 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 41/240 (17%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI      +           EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +       + +++ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VSKKDVVGTWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|85711967|ref|ZP_01043021.1| Flp pilus assembly protein CpaB [Idiomarina baltica OS145]
 gi|85694153|gb|EAQ32097.1| Flp pilus assembly protein CpaB [Idiomarina baltica OS145]
          Length = 226

 Score = 89.2 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 87/203 (42%), Gaps = 14/203 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +   I++     L A  + +     ++   + +  E P +   +++   DL  G +
Sbjct: 1   MKAKKQWVILLLMSIVLTAFTLWLLRSYLNYETAKRLKAETPPEQA-IVVFNQDLKAGTL 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           V  ++L    +P   V  G++ +    + +  +  + ++  +  G P+   +        
Sbjct: 60  VDASMLSLRQYPTHLVNPGWMTE----DYVGTILDLPIKRAVTAGSPVEETQFELNYQKR 115

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           ++  LP+   A T+ + +     G ++P+D VD+V  + + +       V+ N+RV++++
Sbjct: 116 MADRLPENHWAITLPVDLMQLHDGQLQPDDRVDLVSKKPMQDSLS----VVENLRVLSVN 171

Query: 181 HNIDSDERVLVGSTATLELTPMQ 203
                   +  G + TL ++  Q
Sbjct: 172 -----GTDLGQGMSVTLAVSAKQ 189


>gi|304315801|ref|YP_003850946.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777303|gb|ADL67862.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 213

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 32/227 (14%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R+  I +S + A V   +  +                  K I V+ +  D+  G  +  
Sbjct: 6   KRIFLISISLILAAVLAFLQYQYFHKM---------TESDKKIQVIAAFSDIKAGEKID- 55

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           + L     P+            +P           +V I  G  +    +          
Sbjct: 56  SKLGVKLIPQSAYVKDMYLLSEKPTGY-------AKVDIAAGSYVMKSMVSKDNVP---- 104

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179
           +L +G R  T+ +++ S++ G IKP D VDV       E+     V+ + + +  I    
Sbjct: 105 VLKEGMRRVTISVNLESSLAGKIKPGDLVDVGWAPKSDEKGENGAVIANKVEIYDIVNKS 164

Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                  D N   D   L+ +  TL +TP QA A+   ++   L L+
Sbjct: 165 GGDIKKADKNNQYDTDSLLPAAVTLIVTPEQAIAIKEYEAKGSLFLM 211


>gi|228918617|ref|ZP_04082054.1| hypothetical protein bthur0012_57520 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228841025|gb|EEM86230.1| hypothetical protein bthur0012_57520 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 286

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 88/237 (37%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKSSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +  ++L     P + +    +       + +++ G       PI +   +   K+V +  
Sbjct: 54  IKEDMLVERTLPGDAIPPNALR-----VSKRDVVGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|228918954|ref|ZP_04082339.1| hypothetical protein bthur0012_60570 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228840756|gb|EEM86013.1| hypothetical protein bthur0012_60570 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 286

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 41/240 (17%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI      +           EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIIVAAKDIPS 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +       + +++ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VSKKDVVGKWTNDGQPISENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|167894494|ref|ZP_02481896.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           7894]
          Length = 204

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 72/203 (35%), Gaps = 26/203 (12%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I    P+   +L+     GL+  +  G+R
Sbjct: 72  TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLEL 199
             ++ D           TA L +
Sbjct: 180 ATVERDGTPGPTGAGARTAVLAV 202


>gi|229194284|ref|ZP_04321123.1| hypothetical protein bcere0002_58680 [Bacillus cereus ATCC 10876]
 gi|228589183|gb|EEK47163.1| hypothetical protein bcere0002_58680 [Bacillus cereus ATCC 10876]
          Length = 286

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 87/237 (36%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   V+++  D+     
Sbjct: 1   MKPSKFQKKQITAV-GLAAITVAGIYGYNHFA------VENAVKPTKVVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +   +L     P + +    +       + +E+ G       PI +   +   K+V +  
Sbjct: 54  IKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGLFQG 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|229182299|ref|ZP_04309574.1| hypothetical protein bcere0005_56080 [Bacillus cereus 172560W]
 gi|228601155|gb|EEK58701.1| hypothetical protein bcere0005_56080 [Bacillus cereus 172560W]
          Length = 286

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 87/237 (36%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   V+++  D+     
Sbjct: 1   MKPSKFQKKQITAV-GLAAITVAGIYGYNHFA------VENAVKPTKVVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +   +L     P + +    +       + +E+ G       PI +   +   K+V +  
Sbjct: 54  IKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|291557188|emb|CBL34305.1| Flp pilus assembly protein CpaB [Eubacterium siraeum V10Sc8a]
          Length = 318

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 83/217 (38%), Gaps = 20/217 (9%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G++ + L          +   + +  + ++  K D+ +G  +T   +E V     N+ 
Sbjct: 9   VLGVVCIALALIICFAITPLFNASKSSTMKIIRIKNDVKIGQEITSKDIEVVEVGAYNMP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMD 135
              +         +++ G      ++KG+ +   K+        G    L   KRA ++ 
Sbjct: 69  SEVLQKS------EDVVGKYAAAEMIKGEYVLSAKVSDTPASENGYLYGLTGEKRAISIT 122

Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS- 193
           I S +  + G +   D V ++ V    + +  V   L  + VIA+     +D+  +    
Sbjct: 123 IPSFAGGLSGKLISGDIVSIIAVDYKEKGETLVPDELQYVEVIAVTDKKGNDDETVTVKP 182

Query: 194 ----------TATLELTPMQAKALVAAQSVAKLSLVL 220
                     T TL +TP QA  L   ++  ++ + L
Sbjct: 183 DGEEETELPETVTLLVTPEQANILAELEAEGEIHVAL 219


>gi|228938208|ref|ZP_04100823.1| hypothetical protein bthur0008_8760 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971086|ref|ZP_04131719.1| hypothetical protein bthur0003_8680 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788609|gb|EEM36555.1| hypothetical protein bthur0003_8680 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821441|gb|EEM67451.1| hypothetical protein bthur0008_8760 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 286

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 88/237 (37%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +  ++L     P + +    +       + +E+ G       PI +   +   K+V R  
Sbjct: 54  IKEDMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVKREE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + + + ++ G  + PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSVIPNTYVDLYFKQIVKDGDNEKVVFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225


>gi|56460013|ref|YP_155294.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR]
 gi|56179023|gb|AAV81745.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR]
          Length = 235

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 16/213 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGM 59
           MK        V  +F+ +  ++ + L++ +  Q T   + E      +V++   DL VG 
Sbjct: 1   MKKKAKWIFAV--IFSSIISMVTIFLINQYLQQETSRRLQEASGNADSVVVFSKDLNVGD 58

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           ++  + L    +P E + + +  +    +A   + G  +R  +  G+P+    L +  N 
Sbjct: 59  ILEVSDLLVRKYPHELINEHWYLE----SAANLIIGRKLRSSVKSGEPVSERVLSNNQNN 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS--LSERKPTVTVVLSNIRVI 177
           GLS +LP G  A T+          ++K  D VD+V V     + R+         I V 
Sbjct: 115 GLSEVLPNGYYAITVTTDNLGHHNALLKVGDLVDIVFVGESFENSRQYVS---FEEIEVF 171

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
               +I   +      + TL + P +  A   A
Sbjct: 172 ----DIHGLQEGYGSYSLTLLVEPEKVAAFTRA 200


>gi|326390773|ref|ZP_08212326.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993167|gb|EGD51606.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 212

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 32/226 (14%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            + + I +S + A        +                  K I V+ +  D+  G  +  
Sbjct: 5   KKAILIALSLILAGGLSFFQYQYFKSM---------AESDKKIQVIAAVSDIKSGEKIDT 55

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
             L     P+      ++ +++  N          +V I  G  +    +          
Sbjct: 56  K-LGIKEIPQSA----YVKEMYLANEKAT---GYAKVDIAAGSYVLKSMVSHEEVP---- 103

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179
           +L +  R  T+ ++++S++ G IKP D VD+  V     +     +V   +++  +    
Sbjct: 104 VLKEDMRRVTIGVNLTSSLAGKIKPGDFVDIGWVPKDEAKDGASKIVAEKVQIYDVVNKS 163

Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
                  D N   D+  L+ +  TL +TP QA  +   ++   L L
Sbjct: 164 GEDVRKADKNNQYDKESLIPAAVTLIVTPEQAVIIKEYEAKGSLFL 209


>gi|167570106|ref|ZP_02362980.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis
           C6786]
          Length = 168

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 26/180 (14%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   L  G  +  + L+    P      G   +         + G +    I+   
Sbjct: 1   PVVVATRALPTGQPIPADALKVQQMPASIA--GAFSNPAL------VTGRIPASDIVAQA 52

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------V 157
           P+   +L+     GL+  +  G+RA  + +  ++AVG  ++P + VDV +          
Sbjct: 53  PVLENELMS----GLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFVNMKRESSFGT 108

Query: 158 RSLSERKPTVTVVLSNIRVIAI-DHNIDSDERVLV----GSTATLELTPMQAKALVAAQS 212
                 +    ++LS +RV++  D   D D           TA L +   Q  AL  A++
Sbjct: 109 TGSEISQSQARLLLSRVRVLSFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEA 168


>gi|293606492|ref|ZP_06688850.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815115|gb|EFF74238.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 198

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 66/204 (32%), Gaps = 24/204 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------NVLIS 51
           M     +   V  V  LV   +A RL +              A             V+++
Sbjct: 1   MSSLSKIIAGVLLVAGLVLAFLAWRLATHSSAPPASPTPVATAPAPAAPAPVTLHPVVVA 60

Query: 52  KGDLAVGMVVTP-NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           K  +  G  +   N+L    +             +  N    L+G + RV I  GDPI  
Sbjct: 61  KQAIPAGTRIDAQNMLTVAQWQAAL--------SNSFNTPDPLEGAVARVDIAAGDPIVP 112

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVT 168
             L      GL+  L  G+RA  + +      G  I P D VDV  +    +        
Sbjct: 113 SLLAQ----GLAKQLKPGERAVAIAVDEVIGGGNRIAPGDLVDVFFMVEKGQEISGGQAR 168

Query: 169 VVLSNIRVIAIDHNIDSDERVLVG 192
           ++ S +RV+A   +          
Sbjct: 169 LLQSQLRVLAYGKSSVDGPEEKSV 192


>gi|167824387|ref|ZP_02455858.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           9]
          Length = 201

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 26/202 (12%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I    P+   +L+     GL+  +  G+R
Sbjct: 72  TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++  D
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179

Query: 181 HNIDSDERVLV----GSTATLE 198
             ++ D           TA L 
Sbjct: 180 ATVERDGTPGPTGAGARTAVLA 201


>gi|51891526|ref|YP_074217.1| hypothetical protein STH388 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855215|dbj|BAD39373.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 278

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 96/266 (36%), Gaps = 42/266 (15%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           ++ V A V  ++A           +E  T        VL    ++     V P+ +++ A
Sbjct: 8   LALVGAFVCALLAAWFNIRFLEMQQERFT--------VLTVVREVPPYTPVGPDAVQFAA 59

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK--- 127
            P E+V    I D         L+G   R  ++ G  +R   LV  G   L++ L     
Sbjct: 60  VPRESVPADAITDPS------ALEGRYTRALLIPGTILREAHLVPAGGSSLAARLAAAAS 113

Query: 128 -GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS------------ERKPTVTVVLSNI 174
              RA  + +  ++ V G ++  D VD+++  +               R     V+   +
Sbjct: 114 TDVRAMALRVDEATGVAGTLQEGDPVDILVAINADVTEAQERGEGRPARGTLARVIAQRV 173

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
            V+ +       +     S   L++TP  A+ +  A +   + L+       +P +  D 
Sbjct: 174 PVLHV-----QRDEAGGPSAVVLQVTPRTAEEIAFAHANGMIWLL------TSPYTGPDE 222

Query: 235 DVWDVQEEGKEIQIIKAGVIVNKDGE 260
            V       +EI   + G+     GE
Sbjct: 223 PVA-TTGVDREIFFERYGIGQRDTGE 247


>gi|156977410|ref|YP_001448316.1| hypothetical protein VIBHAR_06197 [Vibrio harveyi ATCC BAA-1116]
 gi|156529004|gb|ABU74089.1| hypothetical protein VIBHAR_06197 [Vibrio harveyi ATCC BAA-1116]
          Length = 274

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 105/268 (39%), Gaps = 25/268 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + ++ +     G++ +   +P      EV+ +   +++ V ++      G  
Sbjct: 1   MRSRLVLLVAIAALIVGALGVVDLFKSNPQPKANTEVVEKPNEEYVAVWVTTKAYEKGHA 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
                +    FP   + +  +  V +   +     VL+   + KG  +  E  V  G  G
Sbjct: 61  FDAQGVAKQQFP---LSEALVLGVREDAQINFSPSVLLNRSLEKGAVVLPEYQVSPGQAG 117

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167
            +  L+ +G     +++S  + +   I+P  ++D++ V S ++            R    
Sbjct: 118 YIDLLVTEGMTLYPLEVSDQNLINDYIRPGSYIDILTVSSPNDNLAKNIDKPKRFRGLKA 177

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS--------TATLELTPMQAKALVAAQSVAKLSLV 219
           ++ L +++V+ I  + + D  V   S        T  +E+ P     L  AQ    +  +
Sbjct: 178 SMFLKHVKVLNIGGDDEGDSSVTARSPINEDGLTTVVIEVKPDDLAKLALAQRTMHIE-I 236

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            RS     P  +E  +V D     +E++
Sbjct: 237 YRSQTYNKPEYAEVRNVIDNYTGIEELR 264


>gi|167816011|ref|ZP_02447691.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           91]
          Length = 183

 Score = 86.5 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 21/182 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 12  LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P      G   +         + G +    I    P+   +L+     GL+  +  G+R
Sbjct: 72  TPTPI--AGAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDH 181
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++   
Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179

Query: 182 NI 183
             
Sbjct: 180 AT 181


>gi|229065593|ref|ZP_04200823.1| hypothetical protein bcere0026_55960 [Bacillus cereus AH603]
 gi|228715662|gb|EEL67455.1| hypothetical protein bcere0026_55960 [Bacillus cereus AH603]
          Length = 286

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 87/237 (36%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +  ++L     P +++    +       + +E+ G       PI +   +   K+V +  
Sbjct: 54  IKEDMLVERTLPGDSIPPNALR-----VSKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L   + A  + + + ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKNEEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++P Q + L  A+ + 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKMLG 225


>gi|119961714|ref|YP_948564.1| Flp pilus assembly protein [Arthrobacter aurescens TC1]
 gi|119948573|gb|ABM07484.1| putative Flp pilus assembly protein CpaB family [Arthrobacter
           aurescens TC1]
          Length = 269

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 27/221 (12%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           + V+ +  + AGI   +L            T    + ++V+++  DL  G  +T + L  
Sbjct: 71  LAVALLLCVAAGIAVHQL------------TPASEQRVSVVVAARDLPTGTSLTESDLTS 118

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
           V  P +    G +      N++  L G  +  P+ KG       L+  G   L +  P G
Sbjct: 119 VGVPPDLALSGAL------NSIGTLVGRQLASPLGKGQIPTESSLLGPG---LLTGAPVG 169

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN-IRVIAI-DHNIDSD 186
             A  + ++  S++  ++ P   V VV+  + S  +   + VL+  + V+          
Sbjct: 170 TAAVPLRMADPSSIQ-LLSPGQLVTVVLTAAGSYDESRQSQVLAGPVPVLWTSAQGGKPG 228

Query: 187 ERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           E +  G T     +   P QA+ L  A +  KL  VL S +
Sbjct: 229 EWLGTGDTDGLVVVAADPQQAEKLAGASTQGKLFFVLVSPS 269


>gi|170720035|ref|YP_001747723.1| Flp pilus assembly protein CpaB [Pseudomonas putida W619]
 gi|169758038|gb|ACA71354.1| Flp pilus assembly protein CpaB [Pseudomonas putida W619]
          Length = 315

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 38/231 (16%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
             +   +++ +  L     +T   +       + V  G    V        + G     P
Sbjct: 57  EPQRFPIVVLRKALPANTPLTAEDVLLERL--QVVPAGAFQQVDH------VIGRSSARP 108

Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +  G  +        G   L+ ++   +RA  + +       G + P D VDV++     
Sbjct: 109 LAAGSWLDESSFQPGGP--LARMIRAHERAVAVGVDEVVGAAGQLYPGDFVDVLLYLREE 166

Query: 162 ERKP--TVTVVLSNIRVIAIDHN--IDSDERVLV-------------------GSTATLE 198
              P  +  VVL  +RV+++     + +D R  +                     T  L 
Sbjct: 167 ANNPQSSAQVVLPALRVLSVGEQMGVTNDGRPALTAEELKARREQATPGNLASTRTVVLA 226

Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249
           +    A  L+ A  V  L L +RS A+        +  W   +   +++ I
Sbjct: 227 VPEALASRLMLAAQVGTLRLAVRSAAEQRL-----ARYWAEADSKPQVESI 272


>gi|320161550|ref|YP_004174774.1| hypothetical protein ANT_21480 [Anaerolinea thermophila UNI-1]
 gi|320161814|ref|YP_004175039.1| hypothetical protein ANT_24130 [Anaerolinea thermophila UNI-1]
 gi|319995403|dbj|BAJ64174.1| hypothetical protein ANT_21480 [Anaerolinea thermophila UNI-1]
 gi|319995668|dbj|BAJ64439.1| hypothetical protein ANT_24130 [Anaerolinea thermophila UNI-1]
          Length = 290

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
            P   ++V+++ GDL  G V+T   L     P+    +G + D       Q L G  +RV
Sbjct: 22  QPEPQVSVVVAAGDLPEGRVLTEGDLTAKELPKSLAPEGAVSDP------QSLVGQRLRV 75

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
               GDP+    L     GG +  L   +RA  + ++ +  + G++KP D V V ++ + 
Sbjct: 76  ARSAGDPVLPVHL-----GGETLELRPNERAVALSVTAAQGLAGLLKPGDRVGVTVIVNA 130

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST 194
           S ++     +   +RV+ ID     +E      T
Sbjct: 131 S-QQTFAKYIAGGLRVLWIDPAFRREEAPAPQGT 163


>gi|119717338|ref|YP_924303.1| SAF domain-containing protein [Nocardioides sp. JS614]
 gi|119537999|gb|ABL82616.1| SAF domain [Nocardioides sp. JS614]
          Length = 244

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 23/220 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTP----NILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
             E+  + ++VL++   +A G  V      + +   +    +  DG +       ++   
Sbjct: 32  RAEDRFESVDVLVATQPIAAGETVEAARAADKIGTRSVALRDRLDGALT------SLDGH 85

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
            G +  VPI  G+ +   KL           +P G+ A +++++ ++ V G + P   V 
Sbjct: 86  AGQVALVPIQPGEQLLPAKLGSSSEAAAPLPIPPGQMAVSVNLTDAARVSGFLNPGSEVA 145

Query: 154 VVMVR-SLSERKPTVTVVLSNIRVIAIDHN---IDSDERVLVGSTA--------TLELTP 201
           V +        +    ++LS + V+ +        +        T         T+ +  
Sbjct: 146 VFLNGVDQQTGQTFTRLLLSRVTVLGVGSTAPVATTTTDDTGAQTVEQLPRTLLTIAVDQ 205

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
            QA+ ++ A S  +L+  L +  D   SS +     ++  
Sbjct: 206 KQAQKVLFASSNGELAFALLNP-DSKVSSGKGVTAQNLFR 244


>gi|228912580|ref|ZP_04076242.1| hypothetical protein bthur0013_66390 [Bacillus thuringiensis IBL
           200]
 gi|228847049|gb|EEM92041.1| hypothetical protein bthur0013_66390 [Bacillus thuringiensis IBL
           200]
          Length = 286

 Score = 84.6 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 86/237 (36%), Gaps = 35/237 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   V+++  D+     
Sbjct: 1   MKPSKFQKKQITAV-GLAAITVAGIYGYNHFA------VENAVKPTKVVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +   +L     P + +    +       + +E+ G       PI +   +   K+V +  
Sbjct: 54  IKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGLFQG 168

Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
           +RV A   +   D                ++  V    TL ++  Q + L  A+++ 
Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSTEQLQYLNRAKTLG 225


>gi|148975961|ref|ZP_01812750.1| hypothetical protein VSWAT3_06606 [Vibrionales bacterium SWAT-3]
 gi|145964706|gb|EDK29959.1| hypothetical protein VSWAT3_06606 [Vibrionales bacterium SWAT-3]
          Length = 274

 Score = 84.6 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 26/235 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + ++ +     G+I +    P    T+EV+ E   K + V IS      G  
Sbjct: 1   MRSRLVLLVAIAALIIGALGVIDLFKSEPKPTTTDEVVAEKSEKHVGVWISTESFEKGHA 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +    +     P        + +  Q +    +   L+   +  GD +  E  V  G  G
Sbjct: 61  INAQGVVKQQLPLSEALTLGVREDAQISFSPSI---LLNRNLKAGDVVLPEYQVSPGKPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167
            +  L+ +G     + +S  + +   I+P   +DV+ V S +             R    
Sbjct: 118 YIDLLVTEGMTLYPLKVSDKNLINDYIRPGSFIDVLTVSSPNANLAGNIDKPKRFRGVKA 177

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS---------TATLELTPMQAKALVAAQSV 213
           ++ L +++V+ I ++ D+ +  +            T  +E++P +   L  AQ  
Sbjct: 178 SMFLKHVKVLNIGND-DTGDSSITARSPSKEDGLTTVVIEVSPDELPKLALAQRT 231


>gi|149188847|ref|ZP_01867137.1| hypothetical protein VSAK1_05840 [Vibrio shilonii AK1]
 gi|148837267|gb|EDL54214.1| hypothetical protein VSAK1_05840 [Vibrio shilonii AK1]
          Length = 281

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 105/279 (37%), Gaps = 33/279 (11%)

Query: 1   MKLTRLMGIV-VSGVFALVAGIIAMRLVSPHHV----QTEEVITENPAKFINVLISKGDL 55
           MK   +  +  ++ +  ++    +M       V    Q      E  A+++ V  S   +
Sbjct: 1   MKSKIIFAVAFLAILIGVLGVYSSMNKPLQQPVVEEKQAATPTIEPKAEYVTVWRSTESI 60

Query: 56  AVGMVVTPNIL-EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
           + G  +  + +          + +G   DV        L       PI  G  I  E L 
Sbjct: 61  SRGEPINSSKVKREQLLLTSALDEGIRSDVELDFDPTTLFN----TPISSGQLILPEMLT 116

Query: 115 DRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----------- 162
            +   G +  L+ +G     + +S  + +   I+P +H+D++ V S  +           
Sbjct: 117 KKDAPGYIDLLVTEGMTLYPLVVSSKNLISDFIRPGEHIDILTVSSPKDNLSGKREKPIK 176

Query: 163 -RKPTVTVVLSNIRVIAID-----HNID--SDERVLVGSTATLELTPMQAKALVAAQSVA 214
            R  T T+ L NI+V+ +       ++   S+ +    +T  +E+ P +   L  AQ   
Sbjct: 177 FRGVTATLFLQNIKVLNMGGSEEEQSVKPVSENKEDGFTTIIIEIPPEEVARLALAQR-- 234

Query: 215 KLSL-VLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252
            + L V RS     P  ++  +V D     +E++   +G
Sbjct: 235 TMHLEVYRSREYQEPVYADVRNVMDNYIGVEELRGSPSG 273


>gi|160893683|ref|ZP_02074467.1| hypothetical protein CLOL250_01237 [Clostridium sp. L2-50]
 gi|156864668|gb|EDO58099.1| hypothetical protein CLOL250_01237 [Clostridium sp. L2-50]
          Length = 286

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  +V  +I    V+P   +     TE     + V+     ++VG  +T ++++ + 
Sbjct: 9   VLGVLCIVLSLIICFAVTPLFNKAMSEKTE----IVRVV---KPISVGEEITSDMVKTIE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+ D  +           + G      +  GD I   K+ +      + L  L   
Sbjct: 62  VGSYNLPDDVVKHS------DTVVGAFASADLAPGDYILTSKIAEEPAAENAYLYHLTGE 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ +   ++ + G +K  D V V+      + K  +   L  + VIA+        
Sbjct: 116 KQAISVTVKAFANGLSGKLKSGDIVSVIAPDYRKQGKTVIPAELQYVEVIAVTANSGYDA 175

Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
                ++      +  T TL +TP Q+  L   ++  KL L L    D   + 
Sbjct: 176 NTGEELEDGADRELPGTVTLLVTPEQSMVLAELEADGKLHLSLVYRGDEKSAG 228


>gi|328954938|ref|YP_004372271.1| Flp pilus assembly protein CpaB [Coriobacterium glomerans PW2]
 gi|328455262|gb|AEB06456.1| Flp pilus assembly protein CpaB [Coriobacterium glomerans PW2]
          Length = 223

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 30/248 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK----FINVLISKGDLAVG 58
           + R + I +S     +A  +++   S    + + V  +  A+     ++V ++   +  G
Sbjct: 1   MNRTIRIALSVASGALAIFLSLSYASSVRSEADRVQADALARYGGDLVSVCVATRTIEPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +    ++   +    +  G         +++++ G  V   +     +        G 
Sbjct: 61  ETLDETNVQVKEWVASLLPQGAAT------SLRDVAGTRVTSRVPSHAVLCPVYTETSGE 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTVTVVLSNIRVI 177
              +  +P GK A ++ +    A+GG ++  D VDV + +  LS+R     ++       
Sbjct: 115 ---TLDVPSGKVAVSVPVDDQHALGGAVESGDTVDVYVSKDGLSDRLCEARII------- 164

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
             D +            ATL + P   K L+AA +   +SL +       P+ S D+   
Sbjct: 165 --DTSSRDSSADTAMKWATLAVDPDTVKELLAAIARGSVSLTM-------PAPSTDAKAS 215

Query: 238 DVQEEGKE 245
                G+ 
Sbjct: 216 ATSGGGRS 223


>gi|303241932|ref|ZP_07328425.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
 gi|302590487|gb|EFL60242.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
          Length = 257

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 92/244 (37%), Gaps = 50/244 (20%)

Query: 2   KLTRLMGIVVSG-VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           K  R + +V++G V  L+A ++    +S +               + V+ +  ++    V
Sbjct: 9   KKNRSIYLVIAGIVLGLIAAVLMYMGISSY------------TGMVKVVAASKEIPAFSV 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    ++ +  P+E          ++ +  Q + G + R  I     I+ E L  +G+  
Sbjct: 57  INEADIKLIDVPKEFA-------KNKASDKQLVIGRVSRTIIPADTAIQQEFLAAKGSSS 109

Query: 121 -------LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------------- 159
                  L+ L  +  RA T+ +   S  GG +KP D VD++   S              
Sbjct: 110 SSLLSTKLTDLQNEKLRAFTIPVDQISGCGGEMKPGDLVDIIGSFSIVIPEDESVNNQPQ 169

Query: 160 ---LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
                +++    ++   + V+        +   + G    +E  P QA+ +  A    K+
Sbjct: 170 SSKPQQKEVISKLLAGQVLVL----KTLGENTEIEGIVVAVE--PQQAQEIQFALQAGKI 223

Query: 217 SLVL 220
           S+ L
Sbjct: 224 SVAL 227


>gi|269836549|ref|YP_003318777.1| Flp pilus assembly protein CpaB [Sphaerobacter thermophilus DSM
           20745]
 gi|269785812|gb|ACZ37955.1| Flp pilus assembly protein CpaB [Sphaerobacter thermophilus DSM
           20745]
          Length = 326

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 88/278 (31%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                 NV+++  D+    V++ + +E        V  G         A  ++ G+ V  
Sbjct: 39  AEPTKANVVVAARDIPANTVLSEDDIEIAEVDATGVAPGSAT------APAQVVGMAVSG 92

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----- 155
            ++KG  I    L+  G   L+  L +G RA  + +   +A+GGMI+P+D +D++     
Sbjct: 93  NLVKGQQILSANLLAPG---LTFDLAEGHRAIALPVDRINALGGMIRPDDRIDIIYSIRI 149

Query: 156 -MVRSLSERKPTVT---------------------------------------------- 168
            + R +      V                                               
Sbjct: 150 NLTRVVPSEPMEVRDTTEGYARDDTLVLQPPPGVAGDATYPYPGEPGSRFLVEDNAPGNP 209

Query: 169 ---VVLSNIRVI---AIDHNIDSD--------------------ERVLVGSTATLELTPM 202
              VV+ N+RV+   A D  + SD                    E++       LE+ P 
Sbjct: 210 VTKVVVQNVRVLRVIAGDTTVSSDPTATGNGEASGTPTAPQGAAEKLPNADLLVLEVDPQ 269

Query: 203 QAKALV-AAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
           QA+ +     +  +  +VLR   D    ++       +
Sbjct: 270 QAEVIKFLMDNDGQYQVVLRPKDDAGEVTTNGVTYEQL 307


>gi|313835706|gb|EFS73420.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL037PA2]
 gi|314928377|gb|EFS92208.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL044PA1]
 gi|314970229|gb|EFT14327.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL037PA3]
 gi|328908042|gb|EGG27801.1| Flp pilus assembly protein CpaB [Propionibacterium sp. P08]
          Length = 242

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L+ ++++ V A+   +   R V+  + Q            + V  +K  ++    ++
Sbjct: 6   RRGLIYLLIAVVVAIATFLTVTRYVASVNSQV--------GSRVTVYRAKTAISPYTPLS 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            ++LE V  P                ++  L G  +   +  G  I  + L+   +    
Sbjct: 58  DSVLEPVEVPRRW------TSDSSMVSLSSLRGRRIGFRVEAGTVITRDMLIAPSD---- 107

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIRVIAIDH 181
             L   +R   ++++  + V G +KP D VD+  V   +     +V V+  N RV++I  
Sbjct: 108 --LNPDEREIAINVNSVTGVAGRVKPGDRVDIYAVFADVPGLPKSVRVLTRNTRVVSIAG 165

Query: 182 NIDSDERVLVGST------ATLELTPMQAKALVAAQS 212
            ++   +   G T       TL LTP  A A+  A +
Sbjct: 166 KMNISGQSGNGVTETEVIPVTLALTPNDATAVTYAAA 202


>gi|297543563|ref|YP_003675865.1| SAF domain-containing protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841338|gb|ADH59854.1| SAF domain protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 212

 Score = 83.0 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 85/227 (37%), Gaps = 32/227 (14%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            + + I +S + A        +                  K I V+ +  D+  G  +  
Sbjct: 5   KKAILIALSLILAGGLSFFQYQYFKSM---------AESDKKIQVIAAVSDIKAGEKIDT 55

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
             L     P+      ++ +++   A  ++ G   +V I  G  +    +          
Sbjct: 56  K-LGIKVIPQSA----YVKEMYL--ANNKVTG-YAKVDIAAGSYVLKSMVSQEKIP---- 103

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179
           +L +  R  T+ ++++S++ G IKP D VD+  V +   +     +V   +++  +    
Sbjct: 104 VLKEDMRRVTIGVNLTSSLAGKIKPGDVVDIGWVPNDEAKDGASKIVAEKVQIYDVVNKS 163

Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                  D N   D+  L+ +  TL +TP QA  +   ++   L L+
Sbjct: 164 GEDVRKADKNNQYDKESLIPAAVTLIVTPEQAITIREYETKGSLFLI 210


>gi|84385685|ref|ZP_00988716.1| hypothetical protein V12B01_26164 [Vibrio splendidus 12B01]
 gi|84379665|gb|EAP96517.1| hypothetical protein V12B01_26164 [Vibrio splendidus 12B01]
          Length = 274

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 101/269 (37%), Gaps = 27/269 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + ++ +     G++ +    P    T EV+ E   + + V ++      G  
Sbjct: 1   MRSRLVLLVAITALIVGALGVVDLFKSEPQSTTTTEVVEEKNEEHVAVWMTTEPYEKGRA 60

Query: 61  VTPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGN 118
           +    +     P  + +  G  +D     A   L        +  G+ +  E ++     
Sbjct: 61  IDAQGVVKQQLPLSQALTLGVREDAQISFAPSTLLNR----SLNAGEVVLPEYQVTPGQP 116

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPT 166
           G +  L+ +G     + +S  + +   I+P   +D++ V S ++            R   
Sbjct: 117 GYIDLLVTEGMTLYPLKVSDKNLINDYIRPGTSIDILTVSSPNDNLAGNIDKPKRFRGVK 176

Query: 167 VTVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
            ++ L N++V+ I ++   D         +    +T  +E++P +   L  AQ    +  
Sbjct: 177 ASMFLKNVKVLNIGNDATGDSSITARAPSKEDGLTTVVIEVSPDELPKLALAQRTMHIE- 235

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           + RS     P  +E  ++ D      E++
Sbjct: 236 IYRSQTYTQPEFAEVRNIIDNYTGIAELR 264


>gi|326204891|ref|ZP_08194744.1| Flp pilus assembly protein CpaB [Clostridium papyrosolvens DSM
           2782]
 gi|325984940|gb|EGD45783.1| Flp pilus assembly protein CpaB [Clostridium papyrosolvens DSM
           2782]
          Length = 283

 Score = 82.6 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 22/194 (11%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           ++  +++    D+  G  +  N+++ V     N+  G I       +  ++    V   +
Sbjct: 34  SQRTSIVRVSRDIKAGDKINGNMVQTVEVGSYNLPSGVIK------SKDDVIDKYVLADM 87

Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRS 159
            +GD I + KL        S L  L   K+A ++ +   +S + G + P D V V+    
Sbjct: 88  KEGDYILITKLSAAPVAENSYLHSLNGEKQAISVTVRSFASGLSGKLMPGDIVSVIAPDY 147

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVL-------------VGSTATLELTPMQAKA 206
            ++    V   L  +RVI +  +   D                 + ST TL ++  Q++ 
Sbjct: 148 KNQGISIVPEELRYVRVIGVTASTGYDTNTSENMEKKSDNKEKELPSTVTLLVSQTQSEI 207

Query: 207 LVAAQSVAKLSLVL 220
           L   +S  KL L L
Sbjct: 208 LAGLESDGKLHLSL 221


>gi|89897311|ref|YP_520798.1| hypothetical protein DSY4565 [Desulfitobacterium hafniense Y51]
 gi|89336759|dbj|BAE86354.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 277

 Score = 82.6 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 92/242 (38%), Gaps = 29/242 (11%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +V GV  +V  +    +++P   Q         A+   V+    D+  G V+T ++++ V
Sbjct: 8   MVLGVLCIVLSLFICFVLTPLFNQGV-------ARKATVVRVVKDIKSGGVITKDMVQTV 60

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPK 127
                N+ +  I         + + G      +L GD I  EK+ D      + L  L  
Sbjct: 61  EVGSYNLPENVIRQS------ETVIGKYAEADLLPGDSILTEKVSDTPASENAYLYSLNG 114

Query: 128 GKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI------- 179
            KRA ++ I   +  + G +   D V V+      +    +   L+ + VI +       
Sbjct: 115 DKRAISVSIKSFAQGLSGKLISGDIVSVIAPDYKKQGATVIPPELTYVEVIGVTASTGYD 174

Query: 180 ----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSSSED 233
               +   D  E   + +T TL + P Q K L   ++  KL L L  R   +     +E 
Sbjct: 175 TGAGEQIKDGGEERELPATVTLLVAPEQGKILAELEAEGKLHLSLVHRGAQETAAQFTEL 234

Query: 234 SD 235
            D
Sbjct: 235 QD 236


>gi|163801678|ref|ZP_02195576.1| hypothetical protein 1103602000597_AND4_09497 [Vibrio sp. AND4]
 gi|159174595|gb|EDP59397.1| hypothetical protein AND4_09497 [Vibrio sp. AND4]
          Length = 274

 Score = 82.3 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 100/270 (37%), Gaps = 29/270 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + +  +     G+I +    P  + T  V +    K+++V ++      G  
Sbjct: 1   MRSRLVLLVAIVALIVGALGVIDLFKSEPQAITTAPVTSNKKEKYVSVWMTTEVYEKGNA 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNG 119
           +    +     P        I +  Q +        L+   + +G+ +  E ++     G
Sbjct: 61  IKAQGVVKQQLPLSKALKLGIREDTQISFSPS---ALLNRGLAQGEVVLPEYQVNPDQPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------V 167
            +  L+  G     + +S  + + G I+P   +D++ V S +    T             
Sbjct: 118 YIDLLIKDGMTLYPLKVSTQNLIKGYIRPGTFIDILTVSSPNANLATGAEKPKRFKGVKA 177

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS---------TATLELTPMQAKALVAAQSVAKLSL 218
           ++ L +++V+ I ++ + D+  +            T  +E+ P     L  AQ    L +
Sbjct: 178 SMFLKHVKVLNIGND-EKDKNPVSARSPSKEESLTTVIIEVKPDDLARLALAQQ--TLHI 234

Query: 219 -VLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            V RS     P  +E  ++ D      E++
Sbjct: 235 EVYRSQTYNQPEYAEVRNIIDNYTGIDELR 264


>gi|269216235|ref|ZP_06160089.1| Flp pilus assembly protein CpaB [Slackia exigua ATCC 700122]
 gi|269130494|gb|EEZ61572.1| Flp pilus assembly protein CpaB [Slackia exigua ATCC 700122]
          Length = 255

 Score = 82.3 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 78/199 (39%), Gaps = 16/199 (8%)

Query: 25  RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84
           +L S    +  E++     + + V ++  D+AVG  ++        +    + D  + D 
Sbjct: 7   QLESAVADERAEMLERFGGEQVEVRVATRDIAVGERLSDANSTSQLWLSALLPDQAVIDA 66

Query: 85  HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG 144
                  ++ G  V  PI +G+ +  ++  +     L   +P G  A ++     ++VGG
Sbjct: 67  ------GDVAGRSVTTPIFEGEVVCAQRFDETEEKPL--QVPDGMCAVSVPADTLASVGG 118

Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST---ATLELTP 201
            + P   VDV      +    +  ++  ++ V++   +  +       S     TL + P
Sbjct: 119 SVAPGALVDVY-----TSSGSSTDLLAQSVLVLSTSASGQASASPAASSPLSWVTLAVAP 173

Query: 202 MQAKALVAAQSVAKLSLVL 220
            + +  VAA    +L   L
Sbjct: 174 DRVEEFVAAAQRTELYFTL 192


>gi|284802136|ref|YP_003414001.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5578]
 gi|284995278|ref|YP_003417046.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5923]
 gi|284057698|gb|ADB68639.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5578]
 gi|284060745|gb|ADB71684.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5923]
          Length = 284

 Score = 81.9 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 86/216 (39%), Gaps = 20/216 (9%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +  +  ++   ++    D+ +G  +T ++++ V     N+ 
Sbjct: 9   VIGVICIVLSLIICFAVTPLFNKGMSQKTEIVRVTKDIKIGDEITKDMVQIVEVGSYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  + +       + + G      ++ GD I   K+        + L  L   K+A ++ 
Sbjct: 69  EDVVKNT------ETVLGKFASADMVPGDYIISSKIAAEPAAENAYLYNLTGEKQAMSVS 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184
           +   ++ + G +   D V ++      +    +   L  + VIA+              D
Sbjct: 123 VKSFATGLSGKLVSGDIVSIIAPDYKKQGTTVIPPELQYVEVIAVTAGSGYDANTGEQED 182

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           S+E+ L  ST TL +TP Q+K L   ++   L + L
Sbjct: 183 SEEKELP-STVTLLVTPEQSKILAMLEADGNLHISL 217


>gi|70734200|ref|YP_257840.1| hypothetical protein PFL_0698 [Pseudomonas fluorescens Pf-5]
 gi|68348499|gb|AAY96105.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 311

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 33/214 (15%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
               +        V++   D+   + +  + L            G +      +A+ +  
Sbjct: 47  PTTTSAEDQTRQPVVVLVRDVPPFVPLAADDLALEKL--RTAPAGSL------SAISQAV 98

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           G      +  G  +  +     G   L+ ++   +RA  + +       G + P D+VDV
Sbjct: 99  GRTPWRQLNAGTWLNEQSFSTGGA--LARMIHSDERALAVAVDEVIGAAGQLSPGDYVDV 156

Query: 155 VMV--RSLSERKPTVTVVLSNIRVIAIDHNID-------------------SDERVLVGS 193
           V+   +  S  + +  + +  +RV+A+   +                     D+R L   
Sbjct: 157 VLFLRQDTSNPQQSAQIAVPAMRVLAVGEQLGLANDGQPASPGLSNEEKLKQDQRRLNAR 216

Query: 194 TATLELTPMQ-AKALVAAQSVAKLSLVLRSIADL 226
           T  L + P Q    L+ A  V  L L +RS  + 
Sbjct: 217 TVVLAV-PEQLLSRLMLATQVGVLRLAVRSSEEQ 249


>gi|160942271|ref|ZP_02089580.1| hypothetical protein CLOBOL_07157 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434828|gb|EDP12595.1| hypothetical protein CLOBOL_07157 [Clostridium bolteae ATCC
           BAA-613]
          Length = 289

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 87/223 (39%), Gaps = 26/223 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V G+  +V  ++    ++P   +T        ++   ++    ++ +G  +T ++++ V 
Sbjct: 9   VIGLLCIVLSLVICFAITPMFNRTI-------SEKTEIVRVTKNIRIGDEITKDMVKPVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+ +  + ++       E+ G      +  GD I   K+ +      + L  L   
Sbjct: 62  VGAYNLPESVVRNI------DEVIGKYASADMAPGDYIIRSKVAEEPAAENAYLYNLNGE 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ +   ++ + G +   D V V+      +    +   L  + VIA+        
Sbjct: 116 KQAISVSVKAFANGLSGKLVSGDIVSVIAPDYRKQGSTVIPPELQYVEVIAVTANSGYDA 175

Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                 D +    +  T TL +TP Q + L   ++  KL L L
Sbjct: 176 NTGERGDEETEKELPGTVTLLVTPDQGRVLAELEADGKLHLSL 218


>gi|291525761|emb|CBK91348.1| Flp pilus assembly protein CpaB [Eubacterium rectale DSM 17629]
          Length = 282

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 96/234 (41%), Gaps = 28/234 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V G+F +   +I    ++P       ++    +K + ++     +     +T ++L+ V 
Sbjct: 9   VLGIFCIAVSLIICFAITP-------LVNAGLSKKVTIVRFNRQVNEREEITRSMLDEVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGNGGLSSLLPKG 128
               N+ +  I ++       +++G  +   +  GD I  +K+             L   
Sbjct: 62  VGNHNLPENVIRNIA------DVEGKYLTTTVYAGDYILTDKISDEPAAENKYLYSLNGE 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ I+  +  + G +K  D V V+    L   +  + V L  + VIA+        
Sbjct: 116 KQAMSITINTFAEGLSGKLKSGDIVSVIAPDYLGSGETIIPVELKYVEVIAVTAKSGYDA 175

Query: 180 ---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              +   + DE+ L  ST T+ + P Q+K L   ++  ++ L L    D + +S
Sbjct: 176 NTGEQMSEEDEKELP-STVTILVRPEQSKLLARLEAEGEIHLSLVFRGDADKAS 228


>gi|59711119|ref|YP_203895.1| CpaB family Flp pilus assembly protein [Vibrio fischeri ES114]
 gi|59479220|gb|AAW85007.1| Flp pilus assembly protein CpaB family [Vibrio fischeri ES114]
          Length = 270

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 94/235 (40%), Gaps = 25/235 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE---NPAKFINVLISKGDLAV 57
           MK      I+V  V A+  G+  M   S       E + E    P   + V I+K DL  
Sbjct: 1   MKSK---IILVLAVIAISIGLYGMSQTSTTESPITEKVQEFDKRPEATVMVWIAKKDLMF 57

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  V    LE     +       I    + N  ++L   LV+  IL+GD +  + L+  G
Sbjct: 58  GSPVQRTDLEVQRISQTQADRFGIIHDVKFNFNKKL---LVKKDILQGDIVTSDMLLSPG 114

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---------- 166
             G L+ ++ +GK    +++S  + +GG I   D VD+  + S  +              
Sbjct: 115 QEGYLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISSSEQNLSNDASISNVQSL 174

Query: 167 -VTVVLSNIRVIAIDHNIDSDE-RVLVGSTAT---LELTPMQAKALVAAQSVAKL 216
            +  +L+ I V+ I               T T   LE++  +   LV AQ +A+L
Sbjct: 175 KMAPLLTQIMVLDIIQQEKPVRLNSKSTKTVTNLVLEVSNRELAKLVIAQRIAEL 229


>gi|302387441|ref|YP_003823263.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1]
 gi|302198069|gb|ADL05640.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1]
          Length = 277

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 37/248 (14%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  +V  ++    ++P   Q+         +   ++     + +G  +T ++++ V 
Sbjct: 9   VIGVICIVLSLLICFAITPLFNQSI-------TQKTEIVRVTKPIKIGETITKDMVQTVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+ +  +           + G      +  GD I   K+ D      + L  L   
Sbjct: 62  VGGYNLPEDVVRHT------DTVIGKFASADLAPGDYIIASKIADAPAAENAYLYNLTGE 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ +   ++ + G +   D V +V      +    +   L  + VIA+        
Sbjct: 116 KQAISVSVKSFAAGLSGKLISGDIVSIVAPDYKKQGVTVIPPELQYVEVIAVTADSGYDA 175

Query: 180 DHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLN 227
           +             D+DE+ L   T TL +TP Q+K L   ++   L + L  R   +  
Sbjct: 176 NQQNGKSNPSSEQADADEKELPA-TVTLLVTPEQSKILAELEANGTLHVSLVYRGSKENA 234

Query: 228 PSSSEDSD 235
              +E  D
Sbjct: 235 AKFTEAQD 242


>gi|167747677|ref|ZP_02419804.1| hypothetical protein ANACAC_02398 [Anaerostipes caccae DSM 14662]
 gi|239625012|ref|ZP_04668043.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167653039|gb|EDR97168.1| hypothetical protein ANACAC_02398 [Anaerostipes caccae DSM 14662]
 gi|239521398|gb|EEQ61264.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 263

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 17/192 (8%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +  +K + ++    D+ +G  +T +++  V     N+    + +       + + G    
Sbjct: 31  KEVSKKVEIVRVVKDIKIGDKITGDMVRTVEVGSLNLPSEVMKN------KENVIGKYAS 84

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVM 156
             +  GD I   K+ D      + L  L   K+A ++ +   ++ + G +K  D V V+ 
Sbjct: 85  ADMAPGDYIINSKVADEPAAENAYLYNLSGEKQAISVSVKSFATGLSGKLKSGDIVSVIA 144

Query: 157 VRSLSERKPTVTVVLSNIRVIAI------DHNIDSD--ERVLVGSTATLELTPMQAKALV 208
                + +  +   L  + VIA+      D N   +  E   + ST TL  TP Q++ L 
Sbjct: 145 PDYQKQGETVIPPELKYVEVIAVTAGSGYDANTGEEDPEEKELPSTVTLLATPEQSRILA 204

Query: 209 AAQSVAKLSLVL 220
             +    L + L
Sbjct: 205 MMEKDGNLHISL 216


>gi|226309723|ref|YP_002769617.1| hypothetical protein BBR47_01360 [Brevibacillus brevis NBRC 100599]
 gi|226092671|dbj|BAH41113.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 242

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 29/242 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             RL+ I++   FA   G+    ++ PH V   ++ +    +             G ++ 
Sbjct: 5   PLRLLAILL---FATCIGVATYIILKPHQVTYIQLRSTVEKES------------GQLLE 49

Query: 63  PNILEWVAFPEENVFDGFIDDVHQP-------NAMQELDGVLVRVPILKGDPIRLEKLVD 115
              +E    P      G       P          Q L G+     +  G P+    L  
Sbjct: 50  ARDME----PLTLRLGGIFQQPIAPIPGLIPWEEGQSLVGLAFTRQVKGGRPLLKSDLEQ 105

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
             N   S ++ +     ++ I   + V   +   + V V       E      ++L N+ 
Sbjct: 106 TSNAQGSGVITEKMTGMSIPIDNVAGVSPHVSSGERVHVYASFE-DETGAHSGLLLQNMP 164

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           +I I   ++ D   LV    TL LT  +A  L  A    K+ L L ++ D       D  
Sbjct: 165 IIGIQREMEGDHPNLVA--VTLSLTRDEAVLLTHALHYGKIRLGLAAVKDEGNPGIGDVK 222

Query: 236 VW 237
             
Sbjct: 223 FA 224


>gi|254429646|ref|ZP_05043353.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881]
 gi|196195815|gb|EDX90774.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881]
          Length = 278

 Score = 80.3 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 25/249 (10%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQT--------EEVITENPAKFINVLISKGDLAVGMV 60
           ++ +   ALVA I+A+  +S              +   +   A      +    L VG  
Sbjct: 1   MLPALAVALVALILALVGLSRDPTPALVVKDEGADTASSTQEAPSYRYWVVTQSLNVGDT 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L  V+ P            +   A + + G  +R     G+ +    L   G   
Sbjct: 61  LDEESLAVVSSPA--------PIANVLTADETVVGKELRQFARPGELLSRNHLEPGGT-- 110

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179
           L   LP G RA  + +      GG+++P D VDVV+  R +    P   V+L NI+V+A+
Sbjct: 111 LPGALPTGFRAVGVAVDDVVMAGGLLQPGDLVDVVVAFRKVERDNPAALVLLRNIQVLAV 170

Query: 180 ------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
                   +    E     +T  L +   +   L+ A     + L + +  D + +    
Sbjct: 171 KGAMAAASSEQDREAQRRNNTVVLAVPRDKVPPLLLAAEEGSMRLAVVASDDKDTNKEAV 230

Query: 234 SDVWDVQEE 242
           +   D + +
Sbjct: 231 ASASDGKGK 239


>gi|72162670|ref|YP_290327.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX]
 gi|71916402|gb|AAZ56304.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX]
          Length = 258

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 14/229 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  V A  A  IA+ L    +V T   +      +  VL    D+     
Sbjct: 1   MNPRQRRGVLLMIVAAFGA--IAVFLTIVSYVNT---LNRELGTYRTVLRLTQDVDPYQP 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T +++E    P +   +     +    +  E        P+     +    L+ +    
Sbjct: 56  ITEDMVEPYEVPAKFFDEDLF--LSDLASADEALSQPGSEPVSA-TFLHAGTLLQKSMVI 112

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAI 179
            +  L  G+R   + I+  + V G +     VDV      +E+ P   + VL+N+ V+ +
Sbjct: 113 PAPALENGEREIAIMINAETGVAGKVSRQSRVDVYASFQANEQSPACAIRVLTNVEVLDV 172

Query: 180 D----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSI 223
                               T  LTP QA  L  A+S A K+ L L S 
Sbjct: 173 GDIGSQIDAQTGGTNTVVPVTFRLTPQQALQLTYAESFASKVRLALVSA 221


>gi|167836795|ref|ZP_02463678.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           MSMB43]
          Length = 174

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 21/179 (11%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +  V+    A++ G+ A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAVLLIGIAILLGLYAWVLGRKPAPVAPAAAPAAATAMVPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I+   P+   +L+     GL+  + 
Sbjct: 68  KVQQTPTPI--AGAFPNPTL------VTGRIPASDIVAQAPVLESELMS----GLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRV 176
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGAEIAQTQARLLLSRVRV 174


>gi|153833237|ref|ZP_01985904.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
 gi|148870508|gb|EDL69423.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
          Length = 274

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 100/268 (37%), Gaps = 25/268 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + +  +     G+I +    P  + T  V+     ++++V ++      G  
Sbjct: 1   MRSRLVLLVAIVALIVGALGVIDLFKSDPQPIATAAVVENTNEEYVSVWMTTEAYEKGHA 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           ++   +     P        + +  Q +    +   L+   +  GD +  E  V  G  G
Sbjct: 61  ISAQGVVKQQLPLNEALALGVREDAQISFSPSI---LLNRSLDLGDVVLPEYQVSPGQPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167
            +  L+ +G     +++S  + +   I+P   +D++ V S ++                 
Sbjct: 118 YIDLLVTEGMTLYPLEVSDQNLINDYIRPGSFIDILTVSSPNDNLAQNIDKPKRFKGVKA 177

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS--------TATLELTPMQAKALVAAQSVAKLSLV 219
           ++ L +++V+ I  +   D  V   S        T  +E+ P     L  AQ    +  +
Sbjct: 178 SMFLKHVKVLNIGDDAKGDSSVTARSPSKENGLTTVVIEVKPDDLAKLALAQRTMHIE-I 236

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            RS     P  +E  +V D     +E++
Sbjct: 237 YRSQTYSKPEYAEVRNVIDNYTGIEELR 264


>gi|312621079|ref|YP_003993807.1| flp pilus assembly protein rcpc/cpab [Photobacterium damselae
           subsp. damselae]
 gi|311872800|emb|CBX86891.1| Flp pilus assembly protein RcpC/CpaB [Photobacterium damselae
           subsp. damselae]
          Length = 267

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 26/235 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++   +  +       +A  L +P      E I E P   I V     D+  G  
Sbjct: 1   MKSKLILAFAIIVIL-FGLYGLATNLSNPTSPANHEPIKEEPK--IRVWKLNKDVHPGEF 57

Query: 61  VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118
           +  N+L     PE      GF+DDV+     +     + +  +  G  + ++ LV    +
Sbjct: 58  IERNMLSVENIPESEANGLGFVDDVNLDWKAK----TVFKSHLSAGSLLTIDDLVQPDQD 113

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----MVRSLSERKPTV------- 167
           G +  ++ + K    + ++ SS +GG+I     VD++    +  + S             
Sbjct: 114 GYIDFIIDENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLTGTASNFGNNSGSSKNTV 173

Query: 168 --TVVLSNIRVIAID-HNIDSDERV-LVGSTATL--ELTPMQAKALVAAQSVAKL 216
             T ++S ++V+ +    ID++ +        TL  ELT  QA  L  AQ ++++
Sbjct: 174 SITPIISAVKVLLVKHQLIDTNRQSDTSDEQVTLVVELTRKQAVVLTVAQRISEI 228


>gi|160940635|ref|ZP_02087978.1| hypothetical protein CLOBOL_05529 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436370|gb|EDP14137.1| hypothetical protein CLOBOL_05529 [Clostridium bolteae ATCC
           BAA-613]
          Length = 288

 Score = 79.6 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 90/236 (38%), Gaps = 33/236 (13%)

Query: 1   MK-LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M+   R +  ++S + A V   +A+            V+T+  +  + ++     L  G 
Sbjct: 1   MRINNRFIYGIISILLAAVIAFVAI-----------PVVTKKTSSTLEIVRVVNPLERGQ 49

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +T   LE +     N+             ++++ G      ++ GD I   K+      
Sbjct: 50  QITAQDLELIEVGSYNLPASVAIR------LEDVTGTYAAASLMPGDYILPNKVSSSPLS 103

Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--LSNI 174
              +L  +P G  A ++   ++++A+   ++  D +         E+   V  +  L  +
Sbjct: 104 SDPALYSIPDGMVAISVTTQTLATALSDKLQSGDIIRFYHYNDEHEQLNPVEDIPELRYV 163

Query: 175 RVIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +V+++             ++ DE  L  +T T+  +P QA  L   ++   L + L
Sbjct: 164 KVLSVTDSQGLDIDYTQPLEEDEEKLQTATITVLASPEQAMLLTRYENEGILHVAL 219


>gi|269105131|ref|ZP_06157825.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268160581|gb|EEZ39080.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 267

 Score = 79.6 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 98/235 (41%), Gaps = 26/235 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++   +  +       +A  L +P      E I E P   I V     D+  G  
Sbjct: 1   MKSKLILAFAIIVIL-FGLYGLATNLSNPTSPANHEPIKEEPK--IRVWKLNKDVHPGEF 57

Query: 61  VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118
           +  N+L     PE      GF+DDV+     +     + +  +  G  + ++ LV    +
Sbjct: 58  IERNMLSVENIPESEANGLGFVDDVNLDWKAK----TVFKSHLSAGSLLTIDDLVQPDQD 113

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------------SERKP 165
           G +  ++ + K    + ++ SS +GG+I     VD++ +  L             S+   
Sbjct: 114 GYIDFIIDENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLNGTASNFGNNSGSSKNTV 173

Query: 166 TVTVVLSNIRVIAID-HNIDSDERV-LVGSTATL--ELTPMQAKALVAAQSVAKL 216
           ++T ++S ++V+ +    ID++ +        TL  ELT  QA  L  AQ ++++
Sbjct: 174 SITPIISAVKVLLVKHQLIDTNRQSDTSDEQVTLVVELTRKQAVVLTVAQRISEI 228


>gi|312139255|ref|YP_004006591.1| flp pilus assembly protein cpab [Rhodococcus equi 103S]
 gi|311888594|emb|CBH47906.1| putative Flp pilus assembly protein CpaB [Rhodococcus equi 103S]
          Length = 245

 Score = 79.6 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 92/258 (35%), Gaps = 34/258 (13%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
            TR++  + + V A VAG +A+      +V+  +       + ++VL++   +       
Sbjct: 2   RTRIIAAICAIVLA-VAGTLALI----SYVRGADARALAGTRTVDVLVADQTIPKNTPAD 56

Query: 63  P--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
               ++     PE  V    +       ++ +L G +    +L G+ +   + VD     
Sbjct: 57  SLVGMVVVKKLPEMAVLPDRVT------SLDQLSGKVALTDLLPGEQLVSARFVDPATAR 110

Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 +P+G +  T+ +    A+GG I   D V V M  S   +     + L  +RV  
Sbjct: 111 SQDQGGIPEGMQEVTVLLEPQRALGGHIASGDTVGVFMSFSPPVKNYETHLRLQKVRVTR 170

Query: 179 I---------DHNIDSDERVLVGST----ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +           +   D       T     +L +    A+ +V A     + L       
Sbjct: 171 VQGTFSNADEGDSATVDSSPSPAPTEAFLVSLAVDVPMAERVVFAAEHGTIWLS------ 224

Query: 226 LNPSSSEDSDVWDVQEEG 243
             P SS ++    V  EG
Sbjct: 225 NEPPSSNEAGASVVSPEG 242


>gi|297157611|gb|ADI07323.1| hypothetical protein SBI_04202 [Streptomyces bingchenggensis BCW-1]
          Length = 234

 Score = 79.6 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 92/251 (36%), Gaps = 26/251 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L AG     ++S       +V  E  A  +     K ++     
Sbjct: 1   MNSRQRRGVILLVLSVLCAGGAFAGVLSVIRDVESKVGPETTAYKL-----KSNVPAYQA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +     E ++ P+  +    + D      + ++ G +   P+ KG  ++ + +V+R    
Sbjct: 56  LDAGQFEKISMPKRWLPSTAVTD------LADVRGKIAVTPLRKGSLLQDDMIVERPA-- 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178
               L  G++   + I  ++ V G I P   V++        ++  P   ++++   VI 
Sbjct: 108 ----LKPGQQEIAIMIDAATGVAGKINPGSKVNIYATFEGRSQRDDPVSKIIVAGAEVID 163

Query: 179 IDH----NIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231
           +        D D+   +      T  L    A+ +  A+S A  + L L +    +  S 
Sbjct: 164 VGKLTALEPDQDDTRRLDKAVPITFALDTGDAQRVAYAESFATHVRLALVAPGGDDTVSP 223

Query: 232 EDSDVWDVQEE 242
            D       + 
Sbjct: 224 RDRTYTLDGDR 234


>gi|167628702|ref|YP_001679201.1| hypothetical protein HM1_0585 [Heliobacterium modesticaldum Ice1]
 gi|167591442|gb|ABZ83190.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 270

 Score = 79.2 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 27/195 (13%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           +K  +++    D+  G  +T ++++ V     N+ D  +       ++    G      +
Sbjct: 34  SKKTDIVRVARDIKAGEQITRDMVKTVEVGSYNLPDNVVR------SLDAALGKYAAADM 87

Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRS 159
             GD I   KL D      + L  L   K+A ++ I   S+ + G +   D V V+   +
Sbjct: 88  APGDYILNTKLTDSPAAENAYLYNLTGEKQAMSVTIKSFSNGLSGKLISGDIVSVI---A 144

Query: 160 LSERKPTVTVV---LSNIRVIAI------DHNID-----SDERVLVGSTATLELTPMQAK 205
              RK   TV+   L  + VI +      D +        DE+ L   T TL ++P Q+ 
Sbjct: 145 PDYRKMGATVIPPELKYVEVIGVTASSGYDTDTSHGLKKEDEKQLPA-TVTLLVSPEQST 203

Query: 206 ALVAAQSVAKLSLVL 220
            L   ++  KL L L
Sbjct: 204 ILAGLEADGKLHLSL 218


>gi|197335888|ref|YP_002155268.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
 gi|197317378|gb|ACH66825.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
          Length = 270

 Score = 79.2 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 25/235 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE---NPAKFINVLISKGDLAV 57
           MK      I+V  V A+  G+  M   S       E + E    P   + V I+K DL  
Sbjct: 1   MKSK---IILVLAVIAISIGLYGMSQTSTTESPITEKVQEFDKLPEPTVMVWIAKKDLMF 57

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G +V    LE     +       I    + N  ++L   L++  IL+GD +  + ++  G
Sbjct: 58  GSLVQRTDLEVQRISQTQADRFGIAHDVKFNFNKKL---LIKKDILQGDIVTSDMVLSPG 114

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---------- 166
             G L+ ++ +GK    +++S  + +GG I   D VD+  + S  +              
Sbjct: 115 QEGYLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISSSEQNLSNDASISNVQSL 174

Query: 167 -VTVVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKL 216
            +  +L+ I V+ I           +     +T  LE++  +   LV AQ +A+L
Sbjct: 175 KMAPLLTQIMVLDIIQQEKPVRLNSKSTKTVTTLVLEVSNRELAKLVIAQRIAEL 229


>gi|325275758|ref|ZP_08141635.1| Flp pilus assembly protein CpaB [Pseudomonas sp. TJI-51]
 gi|324099109|gb|EGB97078.1| Flp pilus assembly protein CpaB [Pseudomonas sp. TJI-51]
          Length = 318

 Score = 78.8 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 33/221 (14%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
           P                  V++ +  +     +T + +       +    G    V Q  
Sbjct: 44  PSVATAPAPSAPVEVPRTAVVVLRKSVPANTPLTEDDVLVERL--QVAPAGAYQQVAQ-- 99

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
               + G     P+  G  +       +  G L+ ++   +RA  + +       G ++P
Sbjct: 100 ----VIGRSSARPLAAGTWLEEASF--QAGGPLARMIRAHERAVALGVDEVVGAAGQLRP 153

Query: 149 NDHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVG------------ 192
            D+VDV++      +  + +  VVL  +RV+++       +D R                
Sbjct: 154 GDYVDVLLFLREEPNNPQASAQVVLPALRVLSVGEQTGLANDGRPAQSADEQKARRDQSG 213

Query: 193 -------STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
                   T  + +    A  L+ A     L L +RS  + 
Sbjct: 214 LGNGAGTRTVAVAVPEAMASRLMLAAQAGTLRLAVRSADEQ 254


>gi|258514750|ref|YP_003190972.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778455|gb|ACV62349.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
          Length = 286

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 92/245 (37%), Gaps = 33/245 (13%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  +V  +I    ++P   Q+        A+ I V+    D+  G  +T ++++ V 
Sbjct: 9   VLGVICIVLALIICFGLTPLFNQSVS----QKAQIIRVV---KDIKAGDAITKDMVQTVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+ +  I         +   G      +  GD I   KL D      + L  L   
Sbjct: 62  VGGYNLPEDVIK------QQEAALGKYAVADLSPGDYILTAKLSDTPASENAYLYNLNGD 115

Query: 129 KRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ I + +  + G +   D V V+      +    +   L+ + VI +        
Sbjct: 116 KQAISVSIKNFAGGLSGKLISGDIVSVIAPDYKKQGMTVIPPELTYVEVIGVTASTGYDT 175

Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSS 230
                  D +   D    + +T TL ++P Q+K L   +S  KL L L  R   +     
Sbjct: 176 DQQDTGTDSSAKDDSEKQLPATVTLLVSPEQSKILAELESDGKLHLSLVYRGSKESAAKF 235

Query: 231 SEDSD 235
           +E  D
Sbjct: 236 TELQD 240


>gi|229588196|ref|YP_002870315.1| hypothetical protein PFLU0648 [Pseudomonas fluorescens SBW25]
 gi|229360062|emb|CAY46916.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 313

 Score = 78.4 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 72/213 (33%), Gaps = 32/213 (15%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           + +          V++   D+     +T   L         V  G +        + +  
Sbjct: 46  KTIAAAEDQTRQPVVVLVHDVPAYRALTAADLVVERL--RTVPVGSLT------QLDQAI 97

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           G +    +  G  +  +     G G L+ ++   +RA  + +       G + P D+VDV
Sbjct: 98  GRMPLRALGAGTWLTEDSFT--GGGPLARMIRPDERALAVAVDEVIGAAGQLTPGDYVDV 155

Query: 155 VMV--RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLE------------ 198
           ++   +  S  + +  +VL  +R++++   +   +D    V    T+E            
Sbjct: 156 LLFLRQDASNAEQSAQIVLPAMRLLSVGDQMGLANDGLPAVPPPVTVEERAQAAQRRAAA 215

Query: 199 -----LTPMQ-AKALVAAQSVAKLSLVLRSIAD 225
                  P      L+ A     L L +RS  +
Sbjct: 216 RTVVLAVPEPLLSRLMLAAQAGTLRLAVRSAEE 248


>gi|283797119|ref|ZP_06346272.1| Flp pilus assembly protein CpaB [Clostridium sp. M62/1]
 gi|291075536|gb|EFE12900.1| Flp pilus assembly protein CpaB [Clostridium sp. M62/1]
          Length = 280

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 26/224 (11%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
            V GV  +V  +I    V+P   +     TE     + V+    ++  G  +T ++++ V
Sbjct: 8   AVIGVICIVLSLIICFAVTPLFNKAISDKTE----IVRVV---KEIRTGEEITADMVKTV 60

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPK 127
                N+ +  +       + + + G      ++ GD I   K+ +      + L  L  
Sbjct: 61  EVGAYNLPEDVVR------STETVVGKFASADMVPGDYIIASKIAEEPAAENAYLYSLTG 114

Query: 128 GKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI------- 179
            K+A ++ +   ++ + G ++  D V V+      +    +   L  + VIA+       
Sbjct: 115 EKQAISVSVKSFANGLSGKLQSGDIVSVIAPDYKKQGLTVIPPELKYVEVIAVTANSGAD 174

Query: 180 ---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                + + +    +  T TL +TP Q+  L   ++   + L L
Sbjct: 175 ANTGEHSEDEGDKELPDTVTLLVTPEQSMILAELEADGDIHLSL 218


>gi|297202071|ref|ZP_06919468.1| flp pilus assembly protein CpaB [Streptomyces sviceus ATCC 29083]
 gi|297148028|gb|EDY58323.2| flp pilus assembly protein CpaB [Streptomyces sviceus ATCC 29083]
          Length = 235

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 22/201 (10%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           K D+     +T    E    P+  +    + D      +  L   +    + KG  ++ +
Sbjct: 47  KKDIEPYTRLTAAQFEKTEMPKRWLSANAVTD------LAALRDKIAVTTLKKGSLLQSD 100

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169
            +VD+        L  G++   + I  ++ V G I P   V+V                +
Sbjct: 101 MIVDQP------ALQPGQQEVAIMIDAATGVAGKITPGSAVNVYATFEGQRENDPDQSKI 154

Query: 170 VLSNIRVIAIDH----NIDSDERVLVGSTA---TLELTPMQAKALVAAQSVA-KLSLVLR 221
           +++N RV+ +        D+D+R    S A   T  L+ + A+ L  A+S A ++ L L 
Sbjct: 155 IVTNARVLDVGQITALQPDADDRTREASKAVPITFALSALDAQRLTYAESFAKRVRLALV 214

Query: 222 SIADLNPSSSEDSDVWDVQEE 242
           +  +      ++      +++
Sbjct: 215 APGETGTVPEQERTYELAKDK 235


>gi|325673440|ref|ZP_08153131.1| hypothetical protein HMPREF0724_10913 [Rhodococcus equi ATCC 33707]
 gi|325555461|gb|EGD25132.1| hypothetical protein HMPREF0724_10913 [Rhodococcus equi ATCC 33707]
          Length = 245

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 34/258 (13%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
            TR++  + + V A VAG +A+      +V+  +       + ++VL++   +       
Sbjct: 2   RTRIIAAICAIVLA-VAGTLALI----SYVRGADARALAGTRTVDVLVADQTIPKNTPAD 56

Query: 63  P--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
               ++     PE  V         +  ++ +L G +    +L G+ +   +  D     
Sbjct: 57  SLVGMVVVKKLPEMAVLP------ERVTSLDQLSGKVALTDLLPGEQLVSARFADPATAR 110

Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 +P+G +  T+ +    A+GG I   D V V M  S   +     + L  +RV  
Sbjct: 111 SQDQGGIPEGMQEVTVLLEPQRALGGHIASGDTVGVFMSFSPPVKNYETHLRLQKVRVTR 170

Query: 179 I---------DHNIDSDERVLVGST----ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +           +   D       T     +L +    A+ +V A     + L       
Sbjct: 171 VQGTFSNADEGDSATVDSSPSPAPTEAFLVSLAVDVPMAERVVFAAEHGTIWLS------ 224

Query: 226 LNPSSSEDSDVWDVQEEG 243
             P SS ++    V  EG
Sbjct: 225 NEPLSSNEAGASVVSPEG 242


>gi|77456877|ref|YP_346382.1| Flp pilus assembly CpaB [Pseudomonas fluorescens Pf0-1]
 gi|77380880|gb|ABA72393.1| putative Flp pilus assembly protein [Pseudomonas fluorescens Pf0-1]
          Length = 312

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 33/226 (14%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
            V T   + +   + + VL+   D+A  + +T   +            G +       ++
Sbjct: 44  PVDTPAPVEDPTRQPVVVLV--RDIAPFVTLTAADVTVEKL--RTAPAGSL------ASV 93

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
            ++ G      +  G  +  E         L+ ++  G+RA  + +      GG + P D
Sbjct: 94  DQVIGRTPWRALSAGTWLTQESF--EAGSPLARMIRPGERALAVAVDEVINAGGQLAPGD 151

Query: 151 HVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHNID-------------------SDERV 189
           +VDV++   +  +  +PT  +V+  +RV+ +   +                     ++  
Sbjct: 152 YVDVLLFLRKDENNPQPTAQLVVPAVRVLGVGSQMGLTNSGQPASPAHSEEEKLKQEQLR 211

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
               +  L +       L+ A S   L L +RS  +   +     D
Sbjct: 212 AAARSVVLAVPEPLLNRLMLASSAGVLRLAVRSADEQQLARYWAGD 257


>gi|220930147|ref|YP_002507056.1| SAF domain protein [Clostridium cellulolyticum H10]
 gi|220000475|gb|ACL77076.1| SAF domain protein [Clostridium cellulolyticum H10]
          Length = 294

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 31/236 (13%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  ++  ++    V+P    +        ++   ++    D+  G  +T N+++ V 
Sbjct: 9   VLGVICILLSLVICFAVTPLFNSSI-------SQRTKIVRVSRDIKAGDKITGNMVQIVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+  G I +        +  G      +  GD I   KL        S L  L   
Sbjct: 62  VGSYNLPSGVIKN------KDDAIGKYASADMKTGDYIFNTKLSAAPAAENSYLYSLNGE 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI------DH 181
           K+A ++ +   +S + G +   D V V+     ++    +   L  + VI +      D 
Sbjct: 116 KQAMSVTVGSFASGLSGKLMSGDIVSVIAPDYKNQGTAVIPEELQYVEVIGVTASTGYDT 175

Query: 182 NIDSDERVLVGS-------TATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNP 228
           N   +     G+       T TL ++ +Q+K L A +S  KL L L  R I +   
Sbjct: 176 NTSENTEKQTGNKEKELPSTVTLLVSAVQSKTLAALESDGKLHLSLVYRGIKENAE 231


>gi|302387183|ref|YP_003823005.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1]
 gi|302197811|gb|ADL05382.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1]
          Length = 283

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           ++   ++    ++ VG V+T + ++ V     N+ +  I         +   G      +
Sbjct: 34  SQKTEIVRVTKEIKVGEVITQDKVKTVEVGGYNLPENVIRT------KENAVGTYALADL 87

Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRS 159
             GD I   K+    +   + L  L   K+A ++ I   S+ + G ++  D V V+    
Sbjct: 88  SIGDYILNTKVSKTPSAENAYLYHLDGSKQAISITIKSFSNGLSGKLQSGDIVSVIAPDY 147

Query: 160 LSERKPTVTVVLSNIRVIAI-----------DHNIDSDERVLVGSTATLELTPMQAKALV 208
             +    +   L  + VI++           +     DE+ L  ST TL +TP Q   L 
Sbjct: 148 KKQGATVIPPELKYVEVISVTASNGYDANTGEQETSKDEKELP-STVTLLVTPEQGNLLA 206

Query: 209 AAQSVAKLSLVL 220
           + +S  K  L L
Sbjct: 207 SLESDGKTHLSL 218


>gi|312882143|ref|ZP_07741892.1| Flp pilus assembly protein CpaB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370189|gb|EFP97692.1| Flp pilus assembly protein CpaB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 276

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 97/270 (35%), Gaps = 27/270 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ I +  +     G++             EV++    +++ V ++      G  
Sbjct: 1   MRTPLIIFITIVALIVGALGVVDFLNTKDKPTVITEVVSPEEDQYVAVWVTINFYNRGDE 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNG 119
           VT   +     P        I +  + +    +   L+   +  G+ +  E ++     G
Sbjct: 61  VTSQGVVKKQLPLNEALKLGIREDAEISFSPSV---LLNRSLKTGEVVLPEYQVAPNQPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167
            +  L+  G     + IS  + +   I+P  ++D++ V S +E                 
Sbjct: 118 YVDLLVSPGMTLYPLQISNRNLIKDYIRPGSYIDILTVSSPNENLAGNLDKPKRFKGVEA 177

Query: 168 TVVLSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSVAKLS 217
           T+ L N++V+ I    D  E   V           +T  +E+ P +   L  AQ    + 
Sbjct: 178 TMFLKNVKVLNIGGGGDDSENNYVTAQSPVEEDGVTTVVIEVDPNELTRLALAQRTMHIE 237

Query: 218 LVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            V RS A      +E  ++ D     +E++
Sbjct: 238 -VYRSQAYTQSEHAEVRNIIDNYTGIEELR 266


>gi|221070073|ref|ZP_03546178.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
 gi|220715096|gb|EED70464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
          Length = 329

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 97/272 (35%), Gaps = 30/272 (11%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + + V+    +   ++A    +P            P   ++V+++   +  G  +    L
Sbjct: 11  VLLAVALALGVYGWMLARAPQAPDPQAQASTSDSQPNASLSVVVAAQAVPAGQALKAEDL 70

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           + +  P +   DG          +Q   G +  V I KG P+   ++V     GL+  L 
Sbjct: 71  QLMQLPAK--PDGAY------GEIQAAIGAVPAVDIPKGAPVFQGQMVT----GLALKLS 118

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIA----- 178
           +G+RA  + +  S   G  I+P D VDV            +    ++LS  RV+A     
Sbjct: 119 EGERAVAVKVDESIGAGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSRKRVLAYGSAS 178

Query: 179 IDHNIDSDER-------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +D    +++             TA L +   +   L+   S   L L LR+  D+     
Sbjct: 179 VDAVTTAEKTEGKQANGPDNARTAVLAVPVAEVNQLLLGGSSGSLLLALRNPTDMTEPDR 238

Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263
           E             + + K  V    +G   +
Sbjct: 239 EKFAPL---PGVLTVAMTKGSVAAPLEGADAA 267


>gi|325964059|ref|YP_004241965.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470146|gb|ADX73831.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 257

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 15/195 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
           T   +T  P   +  L +  DL+ G  ++P  +  V  P   + DGF+ +        + 
Sbjct: 73  TVHQLTPAPVSTVTALAAARDLSAGAAISPADVSAVRVPPGMMADGFLQNA------GDA 126

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
            G  +  P+ KG  +   +L+  G   L +  P G  A  + ++  S++  ++ P   V+
Sbjct: 127 AGKQLAAPLRKGQLLTDAQLLGPG---LLAGTPPGSAAVPLRMADPSSIQ-LVSPGQLVN 182

Query: 154 VVMVRSLS-ERKPTVTVVLSNIRVIAI----DHNIDSDERVLVGSTATLELTPMQAKALV 208
           VV+      +++    V+   + V+        +              +     QA  L 
Sbjct: 183 VVLTAGNGFDQQEPPEVLAEGVPVLWTSTQGGQSGQWLGTSETEGLIVVAANGDQAARLA 242

Query: 209 AAQSVAKLSLVLRSI 223
            A +  KL  VL   
Sbjct: 243 GASTQGKLFFVLVGP 257


>gi|222834615|gb|EEE73078.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score = 76.9 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 39/161 (24%)

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           + +  G P+  ++L+     GL+  L  G+RA  + I    A G  ++P D VDV     
Sbjct: 1   MALTPGTPLFEQQLLS----GLALQLEPGQRALAIAIREQMAAGHHVRPGDFVDVYFTLD 56

Query: 160 LSERK----PTVTVVLSNIRVI-------------AIDHNIDSD---------------- 186
               +        ++L+  RV+             A+      D                
Sbjct: 57  GKSDQAPVDAQTRLLLARSRVLAYGSGSVERPPMPAVQRQAQQDKESAGSSLRRASAADQ 116

Query: 187 --ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             +R     +A L +     + L  A+   +L+L LR+  D
Sbjct: 117 TGQRPENVQSAVLAVPLDDVERLTLAEKFGQLTLALRNPDD 157


>gi|240145308|ref|ZP_04743909.1| putative Flp pilus assembly protein CpaB [Roseburia intestinalis
           L1-82]
 gi|257202665|gb|EEV00950.1| putative Flp pilus assembly protein CpaB [Roseburia intestinalis
           L1-82]
          Length = 231

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 16/208 (7%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
               ++    ++   ++    D+  G  +   +L+ V     N+ +  +       ++ E
Sbjct: 24  AVTPLVNAGLSQKTTIVRFVKDVKAGEEIKKGMLQEVEVGGYNLPENVLR------SITE 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPN 149
            +G  +   +  GD I  EK+ D        L  L   K+A ++ IS  +  + G +K  
Sbjct: 78  AEGKYLTADVYAGDYIVAEKVADEPAAENKYLYNLNGEKQAISITISSFAEGLSGKLKSG 137

Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------DHNIDSDERVLVGSTATLELTPM 202
           D V V+    L   +  +   L  + VIA+        +  + +E   + ST T+ + P 
Sbjct: 138 DIVSVIAPDYLGSGETVIPAELKYVEVIAVTAKSGYDANTQEQEEEKELPSTVTVLVRPE 197

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSS 230
           Q++ L   ++  ++ L L    D   ++
Sbjct: 198 QSRLLARLEAEGEIHLSLVYRGDSQKAA 225


>gi|220913319|ref|YP_002488628.1| SAF domain protein [Arthrobacter chlorophenolicus A6]
 gi|219860197|gb|ACL40539.1| SAF domain protein [Arthrobacter chlorophenolicus A6]
          Length = 242

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 15/195 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
           T   +T  PA  +  L +  DL  G  VT + L  V  P   + +G +      +   E 
Sbjct: 56  TVHQLTPAPADTVTALSAARDLPAGTAVTASDLVPVRVPPGLLSEGVL------SGQAEA 109

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
            G  +  P+ KG  +   +L+  G   L +  P G  A  + ++ +S++  ++ P   V+
Sbjct: 110 AGKQLATPLRKGQLVTDVQLLGPG---LLTGTPPGSAAVPLRMADASSIQ-LVSPGQLVN 165

Query: 154 VVMVRSLS-ERKPTVTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALV 208
           VV+      +++    V+ + + V+          +            +  T  Q+  L 
Sbjct: 166 VVLTSGNGFDQQGPSEVLAAGVPVLWTATKGGQGGQWLGTAETDGLIVVAATAEQSARLA 225

Query: 209 AAQSVAKLSLVLRSI 223
            A +  KL  VL   
Sbjct: 226 GASTQGKLFFVLVGP 240


>gi|257784838|ref|YP_003180055.1| SAF domain-containing protein [Atopobium parvulum DSM 20469]
 gi|257473345|gb|ACV51464.1| SAF domain protein [Atopobium parvulum DSM 20469]
          Length = 275

 Score = 76.5 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 86/220 (39%), Gaps = 19/220 (8%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT-EEVITENPAKFINVLISKGDLAVGMV 60
           K TR++  V+S + A       ++ V     ++  E I +   +  ++L++   +  G  
Sbjct: 3   KKTRILISVLSALLASFCFFAYVQSVRAEAEKSRAEAIQKYGGELTSILVATKQIEPGET 62

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++ +  +  ++  + + +G I +       + + G  V   I  G P+    L    +  
Sbjct: 63  LSSSNTQVKSWISDLIPEGAITNP------ESVMGRTVSSVIGVGMPVVSLHLRSVASQ- 115

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
               +P+     T+       +   +     +    V         +T + S+I V+   
Sbjct: 116 --ITIPENLIGLTISHGEKYGLAERLSAGTKLAAYEVTD-----SLITCIASDISVL--- 165

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            + D++  +   S+ TL LTP Q  A+++A +   L   L
Sbjct: 166 -SDDAEGTLYTSSSVTLGLTPEQVPAVLSAYARGTLRFTL 204


>gi|330895617|gb|EGH27924.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 215

 Score = 76.5 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 22/153 (14%)

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           G      +  G  +        G   L+ ++   +RA  + +   +   G + P D+VDV
Sbjct: 1   GRSSGRTLTAGSWLTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDV 58

Query: 155 VMV--RSLSERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGST 194
           ++     +S    +  VV+  +R++ +              +I++DER+      +   T
Sbjct: 59  LLYLPEDMSNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINART 118

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
            T+ +       L+ A     L L +RS  + N
Sbjct: 119 VTVAVPQALVARLMLASQTGVLRLAVRSADEGN 151


>gi|153956473|ref|YP_001397238.1| hypothetical protein CKL_3890 [Clostridium kluyveri DSM 555]
 gi|219856777|ref|YP_002473899.1| hypothetical protein CKR_3434 [Clostridium kluyveri NBRC 12016]
 gi|146349331|gb|EDK35867.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570501|dbj|BAH08485.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 276

 Score = 76.5 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 34/246 (13%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  +V  ++    V+P   Q+        ++   ++     + +G  +T ++++ V 
Sbjct: 9   VIGVVCIVLSLLICFAVTPLFNQSI-------SQKTEIVRVTKPIKIGEAITKDMVQTVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+ +  +           + G      ++ GD I   K+ D      + L  L   
Sbjct: 62  VGGYNLPEDVVRHT------DTVIGKFASADLVPGDYIIASKIADTPAAENAYLYNLTGK 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ +   ++ + G +   D V +V      +    +   L  + VIA+        
Sbjct: 116 KQAISVSVKSFAAGLSGKLISGDIVSIVAPDYKKQGVTVIPPELQYVEVIAVTADSGYDA 175

Query: 180 DHNI--------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPS 229
           D             D    + +T TL +TP Q+K L   ++   L + L  R   +    
Sbjct: 176 DQRNNEPNPSSKQEDTEKELPATITLLVTPEQSKILAELEADGTLHVSLVYRGSKENAAK 235

Query: 230 SSEDSD 235
            +E  +
Sbjct: 236 FTETQE 241


>gi|320008849|gb|ADW03699.1| Flp pilus assembly protein CpaB [Streptomyces flavogriseus ATCC
           33331]
          Length = 234

 Score = 76.5 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 93/246 (37%), Gaps = 31/246 (12%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L+ + V   FA  AG++++       V  E          ++    K ++A    ++   
Sbjct: 11  LLLLSVLCAFAAFAGVLSVISDVNSKVGPE----------VDAYRLKDNVAPYTALSAKQ 60

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
            E V+ P+  + +  + ++       E+DG +    +  G  ++ + +V          L
Sbjct: 61  FEKVSMPKRWLSENAVTEI------DEVDGKIAVTELRAGSLMQSDMMVSSPE------L 108

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDH-- 181
             G++   + I  ++ V G I+PND V++            P   +++SN +V+ +    
Sbjct: 109 RPGEQEIAIMIDAATGVAGKIRPNDKVNIYATFAAERDGEVPQSKIIVSNAKVLDVGELT 168

Query: 182 --NIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSDV 236
                 D+R         T  L  +  + +  A+S A+ + L L +          D   
Sbjct: 169 ALEPRKDDRNQAAEAVPITFALDTLDTQRVAYAESFAQHVRLALIAPGSDGVVRPGDRTY 228

Query: 237 WDVQEE 242
              +++
Sbjct: 229 TLDKDK 234


>gi|228982437|ref|ZP_04142696.1| hypothetical protein bthur0002_55700 [Bacillus thuringiensis Bt407]
 gi|228776620|gb|EEM24928.1| hypothetical protein bthur0002_55700 [Bacillus thuringiensis Bt407]
          Length = 267

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 56/268 (20%)

Query: 1   MKLTRL-MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  ++ + I   G   L AG                  T+   +   V     D+    
Sbjct: 1   MKTKQVAITIAQMGAVILFAGGFYYF-------------TQKQMEPTTVWQFNRDIPANT 47

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117
            +T   L     P + V  GF        + +++ G      ++ G+    +KLVD+   
Sbjct: 48  QITEGDLVKTTIPAQAVTKGF------ALSPKDIVGKYNNSKLVTGEYALKQKLVDKKNI 101

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVV 170
           +   S  L K  R  ++ I+    +GG +K  D VD+V V    +               
Sbjct: 102 DPFESMDLTK-YRKISLPITYIDGLGGNVKRGDKVDLVFVGEGEKAGEGSGKGFKYSKAF 160

Query: 171 LSNIRVIAI-------------------------DHNIDSDERVLVGSTATLELTPMQAK 205
           L +I V  +                           +I S       ST TL +T  QA+
Sbjct: 161 LQDILVYNVTTDDGFRYTDRSEGVKGDEAGDMQDGKDIQSGGEGGKLSTVTLAVTLDQAE 220

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSED 233
            + A      + +V R   D     +  
Sbjct: 221 QISARLKSGNIRIVGR-FDDSQNYDTAG 247


>gi|194366096|ref|YP_002028706.1| Flp pilus assembly protein CpaB [Stenotrophomonas maltophilia
           R551-3]
 gi|194348900|gb|ACF52023.1| Flp pilus assembly protein CpaB [Stenotrophomonas maltophilia
           R551-3]
          Length = 345

 Score = 76.1 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 82/270 (30%), Gaps = 52/270 (19%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KLTR+  + + G+  L+A +  M    P+   T   + ++ A+ I V+ S   L  G  
Sbjct: 2   LKLTRIAAVALIGLAVLLALVAFMIGRKPNAPATVAPVAQSEAQAITVVESVARLPAGEP 61

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T N L            G         ++  + G +    I +G  I    L      G
Sbjct: 62  ITANGLRLAQ--RTAPVAGAAT------SIASVVGKVPVQDIAEGTAISSSALAQ----G 109

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVV----- 170
            S  L  G+RA  + +      G  I P D VDV +         S              
Sbjct: 110 FSLQLRPGERALAVPVDELVGAGNRILPGDFVDVFLNLRNAQPNASGPGEAAQTRLLLSR 169

Query: 171 -------LSNIRVIAIDHNIDSDE-----------------------RVLVGSTATLELT 200
                    +I     D    ++                              +A L + 
Sbjct: 170 LRVLSYGQQDIAPATSDAVASNEGDNRNDPRAADITGSGSSHTTSSETTQPARSAVLAVP 229

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              A  L+      KL L LR+ AD     
Sbjct: 230 VADANRLLLGAQQGKLFLALRNPADTGLPD 259


>gi|167772246|ref|ZP_02444299.1| hypothetical protein ANACOL_03621 [Anaerotruncus colihominis DSM
           17241]
 gi|167665349|gb|EDS09479.1| hypothetical protein ANACOL_03621 [Anaerotruncus colihominis DSM
           17241]
          Length = 281

 Score = 76.1 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 26/229 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  ++  ++    ++P   Q+        A+ + V+     +  G  +T ++++ V 
Sbjct: 9   VVGVICIMLSLLICFGLTPLFNQSLS----QKAEIVRVV---QPIRAGDEITESMVQTVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+ +  +         +   G      +  GD I   KL D      + L  L   
Sbjct: 62  VGGYNLPEDVLR------QKESAVGKYATADLAVGDYIIPSKLSDAPAAENAYLYSLDGS 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           ++A ++ I   +  + G ++  D V V+      + +  V   L  + +I++        
Sbjct: 116 QQAISVSIKSFAEGLSGKLQSGDIVSVIAPDYKQQGQTVVPAELQYVEIISVTASSGYDA 175

Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
                 D +E   +  T TL ++P QAK L   ++   + L L    D 
Sbjct: 176 NTGAPADEEEDKELPDTVTLLVSPEQAKVLAELEAEGTIHLALVYRGDR 224


>gi|266619843|ref|ZP_06112778.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479]
 gi|288868552|gb|EFD00851.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479]
          Length = 283

 Score = 76.1 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 18/190 (9%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
              + ++    ++  G  +T  ++  V     N+    I  +      +E+ G      +
Sbjct: 35  KSKVTLVRVTKEIRTGEQITDKMVTSVEAVGYNLPSNVIYKI------EEVVGKYANADL 88

Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRS 159
            KGD I   KL D      + L  L    RA ++ I   +S + G ++  D V ++    
Sbjct: 89  YKGDYILKSKLSDTPMLRNAYLNKLNGENRAISVSIKSFASGLSGKLEAGDIVSLIAADV 148

Query: 160 LSERKPTVTVVLSNIRVIAI------DHNIDS---DERVLVGSTATLELTPMQAKALVAA 210
            S+R+  V   L  + +IA       D N+      E   + ST T+  +P Q++ L   
Sbjct: 149 GSQRETLVYPELQYVEIIATTGSSGSDQNVQERGNGEEEELASTITVLASPEQSRLLAEL 208

Query: 211 QSVAKLSLVL 220
           +   KL   L
Sbjct: 209 EQTGKLHAAL 218


>gi|225375669|ref|ZP_03752890.1| hypothetical protein ROSEINA2194_01294 [Roseburia inulinivorans DSM
           16841]
 gi|225212526|gb|EEG94880.1| hypothetical protein ROSEINA2194_01294 [Roseburia inulinivorans DSM
           16841]
          Length = 282

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 16/208 (7%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
               ++    ++   ++    D+  G  +   +L+ V     N+ +  +       ++ E
Sbjct: 24  AVTPLVNAGLSQKTTIVRFVKDVKAGEEIKKGMLQEVEVGGYNLPENVLR------SITE 77

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPN 149
            +G  +   +  GD I  EK+ D        L  L   K+A ++ IS  +  + G +K  
Sbjct: 78  AEGKYLTADVYAGDYIVAEKVADEPAAENKYLYNLNGEKQAISITISSFAEGLSGKLKSG 137

Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------DHNIDSDERVLVGSTATLELTPM 202
           D V V+    L   +  +   L  + VIA+        +  + +E   + ST T+ + P 
Sbjct: 138 DIVSVIAPDYLGSGETVIPAELKYVEVIAVTAKSGYDANTQEQEEEKELPSTVTVLVRPE 197

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSS 230
           Q++ L   ++  ++ L L    D   ++
Sbjct: 198 QSRLLARLEAEGEIHLSLVYRGDSQKAA 225


>gi|218670668|ref|ZP_03520339.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56]
          Length = 133

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           A+   ++++   +  G  +    L  + +P      G    +       E         I
Sbjct: 20  AEERTLVVAAKPMRFGDRIRSENLRAIPWPSNETPAGSFVSIEAVVG-NEAQPRYAMAAI 78

Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVG 143
             G+P+   K+   G    LS+ L +G +A ++ ++    V 
Sbjct: 79  DPGEPVLSSKITGTGERATLSAALDQGMKAVSIRVNDVLGVA 120


>gi|17549310|ref|NP_522650.1| signal peptide protein [Ralstonia solanacearum GMI1000]
 gi|17431562|emb|CAD18240.1| probable flp pilus assembly cpab; signal peptide protein [Ralstonia
           solanacearum GMI1000]
          Length = 208

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 15/153 (9%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
              V       EN      V+++   L  G  +T + +   + P          +V+   
Sbjct: 30  RQPVPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVGVESLPIN--PADAFSEVN--- 84

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
              ++ G    VPI  G P+   +L    + GL+  +  G+RA  + +     VG  + P
Sbjct: 85  ---KVVGREPIVPIGIGVPLIGSQL----SSGLALQVALGQRAVAITVDEVVGVGNRVMP 137

Query: 149 NDHVDVVMVRSLSERK---PTVTVVLSNIRVIA 178
            D+VDV +V     ++       ++L ++RV+A
Sbjct: 138 GDYVDVFLVLRKDGQEIDDSKAHLLLPHLRVLA 170


>gi|310830505|ref|YP_003965606.1| hypothetical protein PPSC2_p0144 [Paenibacillus polymyxa SC2]
 gi|309249972|gb|ADO59538.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 273

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 87/254 (34%), Gaps = 52/254 (20%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           + + V +   DL V   +T   ++ V+ P+  V   F  +       ++     V   + 
Sbjct: 32  QPVKVYVFNKDLNVNHQITAADIKEVSVPQSGVTQDFALEP------KQFLNKYVGTEVY 85

Query: 104 KGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
            G  I  +++ D+G  +   S  L K  R  ++ IS     GG +K  D VD+V      
Sbjct: 86  AGSFIYKKQIKDKGQLDPFKSMDLTK-YRKISIPISYVEGFGGNVKRGDAVDLVFTGVGK 144

Query: 162 ERK--------PTVTVVLSNIRV------------------IA---------IDHNIDSD 186
           ++               L N+ +                  +          ID + +SD
Sbjct: 145 KKDDKGTEQSFQYSKAFLQNVLIYNVTTSDGFEFKDHSTTDLTKTSGQSGEKIDTSANSD 204

Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED---SDVWDVQEEG 243
           E  +     TL +T  QA+ + A  +   + LV R  AD     +      D   V    
Sbjct: 205 ELAV----VTLAVTLDQAEEITARMNAGNVRLVSR-FADNESYETLGFVLGDYSKVYSAP 259

Query: 244 KEIQIIKAGVIVNK 257
              +  +  +  N+
Sbjct: 260 ANAETGRGTINANQ 273


>gi|329935283|ref|ZP_08285249.1| hypothetical protein SGM_6766 [Streptomyces griseoaurantiacus M045]
 gi|329305106|gb|EGG48965.1| hypothetical protein SGM_6766 [Streptomyces griseoaurantiacus M045]
          Length = 237

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 96/252 (38%), Gaps = 32/252 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ +V+S + AL A    + ++   + +    +T    +         D+A    ++
Sbjct: 6   RRGVILLVLSALCALGAFAGVLSVIRDVNSKVGPEVTAYRLR--------NDIAPYKELS 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            +  + V+ PE  +    + D+ +      + G +    + KG  ++ + +V R      
Sbjct: 58  ADQFQRVSMPERWLPRTAVTDLAR------IRGKIAVTRLEKGSLLQSDMIVARPA---- 107

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVI--- 177
             L  G++   + I  ++ V G I P   V++         + K    V++ N RV+   
Sbjct: 108 --LAAGQQEIAIMIDAATGVAGKIDPGSRVNIYATFKAENDKGKDQSKVIVENARVLDVG 165

Query: 178 ---AIDHNIDSDER---VLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230
              A+D +  SDER          T  L    A+ +  A+S A+ + L L +        
Sbjct: 166 KITALDPDQSSDERRRSATQAVPITFALGTADAQRVAYAESFAEHVRLALVAGGSRQQVP 225

Query: 231 SEDSDVWDVQEE 242
             D      +++
Sbjct: 226 PGDRTYTLDEDK 237


>gi|302553849|ref|ZP_07306191.1| flp pilus assembly protein CpaB [Streptomyces viridochromogenes DSM
           40736]
 gi|302471467|gb|EFL34560.1| flp pilus assembly protein CpaB [Streptomyces viridochromogenes DSM
           40736]
          Length = 235

 Score = 75.7 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 87/232 (37%), Gaps = 30/232 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ +++S V AL A    + ++S    +    +T            K ++     + 
Sbjct: 6   RRGVILLLLSVVCALGAFAGVLSVISDVKSKVGPEVTA--------YRLKSEVPPYTTLR 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
               E +  PE  + D  + D      ++E+ G +    +  G  ++ + +V R      
Sbjct: 58  TGQFEKIKMPERWLSDNAVTD------LREIQGKIAVTTLRAGSLLQSDMIVRRPA---- 107

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAID 180
             L  G++   + I  ++ V G I P   V+V                ++++N +V+ + 
Sbjct: 108 --LQPGQQEVAIMIDAATGVAGKITPGASVNVYATFEGAREGDPDQSKIIVTNAKVLDVG 165

Query: 181 -------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIA 224
                     +  ++   G   T  L+ + A+ +  A+S A ++ L L +  
Sbjct: 166 ELTALEPDESNRTQQPTDGVPITFALSALDAQRITYAESFAKRVRLALVAPG 217


>gi|254762576|ref|ZP_05214416.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Australia
           94]
          Length = 201

 Score = 75.7 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK ++     ++ V  L A  +A      H         EN  K   ++++  D+     
Sbjct: 1   MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +  ++L     P + +    +         +E+ G       PI +   +   K+V +  
Sbjct: 54  IKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108

Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173
              S++  L  G+ A  + +   ++ G  I PN +VD+    +V+     K     +   
Sbjct: 109 LPDSAILNLKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168

Query: 174 IRVIA 178
           +RV A
Sbjct: 169 VRVTA 173


>gi|210629922|ref|ZP_03296169.1| hypothetical protein COLSTE_00052 [Collinsella stercoris DSM 13279]
 gi|210160739|gb|EEA91710.1| hypothetical protein COLSTE_00052 [Collinsella stercoris DSM 13279]
          Length = 258

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 18/203 (8%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
              E + +   + ++V ++  D+  G  +         +    +    +       ++ +
Sbjct: 42  ARRETLEQYGGELVSVCVATRDIDPGEQIDDGNAVVTEWVSTLLPAEAVT------SLAD 95

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           + G      I    P+       R +   +  +P+GK A ++      AVGG+++  D V
Sbjct: 96  VAGRTATARIPAHAPLSEAYFEQRES---AVDVPRGKVAVSVASDAEHAVGGVLERGDLV 152

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
           DV +       K      L++  VI           V      TL + P   + L+AA S
Sbjct: 153 DVYVQGDALADK------LTDAEVIDTSALASGSGDVQW---VTLAVRPSAVRELLAAAS 203

Query: 213 VAKLSLVLRSIADLNPSSSEDSD 235
              ++L + +  +     S+D++
Sbjct: 204 RGMVTLAVPAEQEDGDRDSDDAE 226


>gi|302542852|ref|ZP_07295194.1| flp pilus assembly protein CpaB [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460470|gb|EFL23563.1| flp pilus assembly protein CpaB [Streptomyces himastatinicus ATCC
           53653]
          Length = 234

 Score = 75.3 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 90/251 (35%), Gaps = 26/251 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L AG     ++S  +    +V  E  A  +     KG++     
Sbjct: 1   MNSRQRRGVILLVLSVLCAGGAFAGVLSVVNDVESKVGPETTAYKL-----KGNVDAYEA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +     E V+ PE  V    + D      + E+ G +    + +G  ++ + + +R    
Sbjct: 56  LDAGDFEKVSMPERWVPSTAVTD------LSEVRGRIAATRLSQGSLLQTDMVANRPA-- 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIA 178
               L  G++   + I  ++ V G I P   V++        +       +++ +  VI 
Sbjct: 108 ----LKAGQQEIAIMIDAATGVAGKITPGAKVNIYATFEGKAQGEASVSKLIVDDAEVID 163

Query: 179 IDH----NIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231
           +        D D+   V      T  L    A+ +  A+S A  + L L       P S 
Sbjct: 164 VGKLSALKPDEDDERRVDQAVPITFALDTKDAQRVAYAESFASHVRLALIGPGADAPVSP 223

Query: 232 EDSDVWDVQEE 242
            D       ++
Sbjct: 224 RDRTYTLGGDK 234


>gi|266625537|ref|ZP_06118472.1| putative Flp pilus assembly protein CpaB [Clostridium hathewayi DSM
           13479]
 gi|288862557|gb|EFC94855.1| putative Flp pilus assembly protein CpaB [Clostridium hathewayi DSM
           13479]
          Length = 231

 Score = 75.3 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 17/188 (9%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K I ++    D+ +G  VT +++  V     N+    + +       + + G      ++
Sbjct: 1   KKIEIVRVVKDIKIGDKVTGDMVRSVEVGSLNLPSEVMKN------KENVIGKYASADMV 54

Query: 104 KGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSL 160
            GD I   K+ D      + L  L   K+A ++ +   ++ + G +K  D V V+     
Sbjct: 55  PGDYIINSKVADEPAAENAYLYNLSGEKQAISVSVKSFATGLSGKLKSGDIVSVIAPDYQ 114

Query: 161 SERKPTVTVVLSNIRVIAI------DHNIDSD--ERVLVGSTATLELTPMQAKALVAAQS 212
            + +  +   L  + VIA+      D N   +  E   + ST TL  TP Q++ L   + 
Sbjct: 115 KQGETVIPPELKYVEVIAVTAGSGYDANTGEEDPEEKELPSTVTLLATPEQSRILAMMEK 174

Query: 213 VAKLSLVL 220
              L + L
Sbjct: 175 DGNLHISL 182


>gi|167769285|ref|ZP_02441338.1| hypothetical protein ANACOL_00608 [Anaerotruncus colihominis DSM
           17241]
 gi|167668253|gb|EDS12383.1| hypothetical protein ANACOL_00608 [Anaerotruncus colihominis DSM
           17241]
          Length = 281

 Score = 74.9 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  ++  ++    ++P   Q+        A+ + V+     +  G  +T ++++ V 
Sbjct: 9   VVGVICILLSLLICFGLTPLFNQSVS----QKAEIVRVV---QPIRAGDEITESMVQIVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+ +  +         +   G      +  GD I   KL D      + L  L   
Sbjct: 62  VGGYNLPEDVLR------QKESAVGKYATADLAVGDYIIPSKLSDAPAAENAYLYSLDGS 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           ++A ++ I   +  + G ++  D V V+      + +  V   L  + +I++        
Sbjct: 116 QQAISVSIKSFAEGLSGKLQSGDIVSVIAPDYKQQGQTVVPAELQYVEIISVTASSGYDA 175

Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
                +D ++   +  T TL ++P QAK L   ++   + L L    D   + 
Sbjct: 176 NTGEPVDEEDDKELPDTVTLLVSPEQAKVLAELEAEGTIHLALVYRGDRENAD 228


>gi|256785519|ref|ZP_05523950.1| hypothetical protein SlivT_13601 [Streptomyces lividans TK24]
 gi|289769415|ref|ZP_06528793.1| flp pilus assembly protein CpaB [Streptomyces lividans TK24]
 gi|289699614|gb|EFD67043.1| flp pilus assembly protein CpaB [Streptomyces lividans TK24]
          Length = 235

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 82/232 (35%), Gaps = 30/232 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ +++S + AL A    + +++    +    +T    K         D+     + 
Sbjct: 6   RRGIILLILSVLCALGAFAGVLSVINDVKSKVGPEVTAYRVK--------SDIEPYTELG 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
               E V  PE  + +  + D+ +      + G +    +  G  ++ + +VD       
Sbjct: 58  ATQFEKVEMPERWLSENAVTDLSR------VRGKIAVTTLKAGSLLQTDMIVDTPA---- 107

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180
             L  G++   + I  ++ V G I P   V+V                ++++  +VI + 
Sbjct: 108 --LRPGQQEVAIMIDAATGVAGKITPGSTVNVYATFEGPREGDPDQSKIIVTGAKVIDVG 165

Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIA 224
                       D         T  L+ + A+ +  A+S A ++ L L +  
Sbjct: 166 ELTSLEPDEDSRDREPTDAVPITFALSTIDAQRITYAESFARRVRLALVAPG 217


>gi|256827719|ref|YP_003151678.1| SAF domain-containing protein [Cryptobacterium curtum DSM 15641]
 gi|256583862|gb|ACU94996.1| SAF domain-containing protein [Cryptobacterium curtum DSM 15641]
          Length = 210

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 23/223 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE--EVITENPAKFINVLISKGDLAVG 58
           M+   ++ I +         + A         Q +  E ++      + V ++  D+A G
Sbjct: 1   MRRKGMLAISLLCGLICALCVSAYLQAEQARFQAQRDEALSRYGGDQVQVCVATRDIAPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
              +   +E  ++  E      +        + +++G     P+  G+ I   +  D   
Sbjct: 61  ETYSSANVELRSWIAELSPRQAV------GTVADIEGKQAAGPVSSGEVITTVRCADN-- 112

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
              +  +P GK+A ++ +  S AVGG ++       V V   S         L + +V+A
Sbjct: 113 -TAAIQVPAGKQAVSIAVESSQAVGGSLEAG-----VQVSVYSASSSGSVAYLCDAQVLA 166

Query: 179 IDHNIDSDERVLVGSTATLELTPMQA-KALVAAQSVAKLSLVL 220
                            TL + P Q  + + AA+  + + L L
Sbjct: 167 AGTYSAGRMW------VTLAVDPAQVQEVIAAARDSSSVYLTL 203


>gi|209809169|ref|YP_002264707.1| putative Flp pilus assembly protein [Aliivibrio salmonicida
           LFI1238]
 gi|208010731|emb|CAQ81122.1| putative Flp pilus assembly protein [Aliivibrio salmonicida
           LFI1238]
          Length = 260

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 95/230 (41%), Gaps = 23/230 (10%)

Query: 1   MKLTRLMGIVV-SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK+  ++ + V + +F L     ++ L +P  +Q+ + +       I V   K ++ +  
Sbjct: 1   MKVKLIIVLAVMTILFGLYGLGESLSLFTPQKIQSAKEVK------IKVWRLKKEVNMSE 54

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGN 118
            +  ++L     PE+        +      +  + G + +  + KG  I +  L     +
Sbjct: 55  EINRHMLALELMPEQKANALSFSEDVT---LDLIPGTVFKSELKKGTYISMSDLITPEED 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV---------TV 169
           G +  ++   +    + +  SS  GG+I+    VD++ + S      +          T 
Sbjct: 112 GYIDYVIAPERIPFPITVDPSSITGGVIRSGTIVDILALTSPQNINNSTRNVKKSVSITP 171

Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKL 216
           + + ++V+ + H++    R  V +      LELT  QA  L+ A+ +A +
Sbjct: 172 IFTGVKVLQVKHSVIKGNRNDVETEVISLILELTREQATKLIVAKKIADI 221


>gi|149909548|ref|ZP_01898202.1| tungstate-binding protein precursor [Moritella sp. PE36]
 gi|149807453|gb|EDM67404.1| tungstate-binding protein precursor [Moritella sp. PE36]
          Length = 267

 Score = 74.9 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 24/234 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ I      A+V G+  +   +P   +T+          I V   + D+  G +
Sbjct: 1   MKTKLIIAIAT---LAIVIGLYGLLTEAPPATETQITEIVVEENKIKVWFLRNDVKRGQL 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V  +       PE       I D    N  +   G +    +     +  E +    +  
Sbjct: 58  VERSDFSIRQLPESEANALGIADESNMNFDK---GSVYNRELTVQSAVFPEYITATNDLE 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RKP 165
            +  +L + +    + +     +GG+I    +VDV+ + S                 +  
Sbjct: 115 YVELVLAENRVPFVIKVDPDVIIGGVISHGSYVDVLALASGGSKISFNSDELSQPKFKSI 174

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKL 216
           +V+ VL  ++V+ I     S  R     TAT   LELT  Q   L  A+ +A L
Sbjct: 175 SVSPVLIGVKVLTIQQGAMSGGRNNSDVTATVLVLELTRKQVAKLTVAKRIADL 228


>gi|221633004|ref|YP_002522229.1| putative membrane fimbriae assembly protein [Thermomicrobium roseum
           DSM 5159]
 gi|221156453|gb|ACM05580.1| putative membrane fimbriae assembly protein [Thermomicrobium roseum
           DSM 5159]
          Length = 331

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 11/161 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+    + ++   V A VA ++ +  +           T  P   + V  +  D+  G V
Sbjct: 1   MRRAGRLYLLAGFVLATVAVVLGIIALQRQREPVMPTQTTTPTTQVVV--AARDVRAGSV 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   +  V     +V  G            ++ G++V   ++ G  I L  LV      
Sbjct: 59  LTSEDVTVVETDPASVAPG------TARQPDQVVGLVVAGDLVAGQRILLANLVLP---S 109

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +S+ +  GKRA  + +   +A+GG+++PND +D++    L 
Sbjct: 110 VSNTVQPGKRAVAIPVDRINALGGLLQPNDSIDLIYAGRLD 150



 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 51/258 (19%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-------------EWVAFPE 73
           V              P + + ++++ GDL  G  +    L               VA P 
Sbjct: 67  VETDPASVAPGTARQPDQVVGLVVA-GDLVAGQRILLANLVLPSVSNTVQPGKRAVAIPV 125

Query: 74  ENVFDGFIDDVHQPNAMQEL--DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131
           + +    +  + QPN   +L   G L  V IL  +P+   +L D   G      P     
Sbjct: 126 DRI--NALGGLLQPNDSIDLIYAGRLDLVRILPTEPL---ELADSAQGFSP---PPESVK 177

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-----------D 180
                S SS       P +    V++    E +P   +++ N+R++ +            
Sbjct: 178 LPEPGSGSSQSRRYPYPGEPGSRVVISDTGEGQPITKIIVQNLRILQVIAGTSVVVRSPG 237

Query: 181 HNIDSDERVLVGST-------ATL--------ELTPMQAKALV-AAQSVAKLSLVLRSIA 224
                        T       ATL        E+ P QA+ +        +  ++LR+  
Sbjct: 238 QARSELTSTEPTRTPMPTANEATLPPVDLLIVEVDPEQAELISFLLDQNVRYQVILRARG 297

Query: 225 DLNPSSSEDSDVWDVQEE 242
           D  P  ++      + E 
Sbjct: 298 DAQPVQTDGVTYDRLVER 315


>gi|297192381|ref|ZP_06909779.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151331|gb|EFH31098.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 237

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 34/240 (14%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L+ + V    A  AG++ +       V  E                K D+A    +    
Sbjct: 11  LILLSVVCGIAAFAGVLTVIADVNSKVGPETTAYRV----------KSDIAPYTPLEAGQ 60

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
            E V+ PE  +    + D      +  L G +    +  G  ++ + +V +        L
Sbjct: 61  FEKVSIPERWLSRSAVTD------LGVLRGKIAVTELRSGSLLQSDMIVQKPE------L 108

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRVIAIDHNI 183
             G++   + I  ++ V G I+P + V++    +      T    ++++N +VI +    
Sbjct: 109 ESGQQEIAIMIDAATGVAGKIRPGNLVNIFATFAAQNDSGTDQSRLIVANAKVIDVGELT 168

Query: 184 DSDERVLVGSTA-------TLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSD 235
             D R    STA       T  L    A+ +  A+S A+ + L L  + D +P++    D
Sbjct: 169 ALDRRSGDRSTAPREAVPITFALNTADAQRVAYAESFAEHVRLAL--LPDGSPTTLRPGD 226


>gi|296131921|ref|YP_003639168.1| SAF domain protein [Thermincola sp. JR]
 gi|296030499|gb|ADG81267.1| SAF domain protein [Thermincola potens JR]
          Length = 204

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 74/181 (40%), Gaps = 23/181 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++ +++S + +  A  + + +V        +   +   + + ++ +  D+     +
Sbjct: 4   KKIGIIFVILSILLSFGAAYLFLNMV--------QKTEKTMGETVQIITASKDVEAYTPL 55

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T + L +   P + +   F+ +       +E+ G +  VP+ K D I    +    +   
Sbjct: 56  TRDKLSYTEIPRKYLNGSFLTNE------KEVLGKVTLVPMAKNDIITRSMIKKVDD--- 106

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--IAI 179
              LPK  R   +           I+P D VD++   +L  ++    V+ S+I V  IA+
Sbjct: 107 ---LPKEVRIVQLR-PPVVFDSKEIEPGDRVDIIGTFALDNKQLITQVIQSDIIVHDIAM 162

Query: 180 D 180
           D
Sbjct: 163 D 163


>gi|295395660|ref|ZP_06805852.1| flp pilus assembly protein CpaB [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971476|gb|EFG47359.1| flp pilus assembly protein CpaB [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 259

 Score = 74.5 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
           G+  ++A  +   +V    V   + ++        V ++K D+     +  ++LE    P
Sbjct: 8   GLLLMIAATLLAIMVFIAVVVYVQNVSSKVGPTTEVYVAKEDITAFQPIEQDMLETKTVP 67

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
              + +  +       +++++ G    V I  G  I+ + +        +S +  G+R  
Sbjct: 68  NRYITEDMVT------SLEQVAGQKASVKISAGSFIQTDAIEP------ASSIEDGQREI 115

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV--------------VLSNIRVIA 178
           ++     + V G + P D VDVV   + +                      V+SN  V++
Sbjct: 116 SITFVGDAGVSGRVSPGDKVDVVASFARARENDQGETAYKRADIPYNVSGIVVSNATVVS 175

Query: 179 IDH---------NIDSDERVLVGSTATLELTPMQAKALVAAQS 212
           +             D           T  ++  +A  L  A++
Sbjct: 176 VGQPVDPNAVVGAADQSGAEAEAVAVTFAVSVEEAGRLSYAEA 218


>gi|239929205|ref|ZP_04686158.1| hypothetical protein SghaA1_13346 [Streptomyces ghanaensis ATCC
           14672]
          Length = 235

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K ++A    ++    E +  PE  + +  + D      ++E+ G +
Sbjct: 33  VKSKVGPEVTAYRLKTNVAPYSTLSAGQFEKIKMPERWLSENAVTD------LREIRGKI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + +G  ++ + +VD+        L  G++   + I  ++ V G I P   V+V   
Sbjct: 87  AVTTLREGSLLQSDMVVDQPA------LQPGQQEVAIMIDAATGVAGKITPGSTVNVYAT 140

Query: 158 RSLSERKPT--VTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208
                        ++++N +V+ +           D   R       T  L+ + A+ + 
Sbjct: 141 FEGEREGAAAQSKIIVTNAKVLDVGRLTALEPDEEDRGRRPTDAVPITFALSTIDAQRIT 200

Query: 209 AAQSVA-KLSLVLRSI-ADLNPSSSEDS 234
            A+S A ++ L L +   D +   S+ +
Sbjct: 201 YAESFAQRVRLALVAPGGDTSVPDSQRT 228


>gi|291437538|ref|ZP_06576928.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340433|gb|EFE67389.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 203

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 77/194 (39%), Gaps = 23/194 (11%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           K ++A    ++    E +  PE  + +  + D      ++E+ G +    + +G  ++ +
Sbjct: 15  KTNVAPYSTLSAGQFEKIKMPERWLSENAVTD------LREIRGKIAVTTLREGSLLQSD 68

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTV 169
            +VD+        L  G++   + I  ++ V G I P   V+V                +
Sbjct: 69  MVVDQPA------LQPGQQEVAIMIDAATGVAGKITPGSTVNVYATFEGEREGAAAQSKI 122

Query: 170 VLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLR 221
           +++N +V+ +           D   R       T  L+ + A+ +  A+S A ++ L L 
Sbjct: 123 IVTNAKVLDVGRLTALEPDEEDRGRRPTDAVPITFALSTIDAQRITYAESFAQRVRLALV 182

Query: 222 SI-ADLNPSSSEDS 234
           +   D +   S+ +
Sbjct: 183 APGGDTSVPDSQRT 196


>gi|221195348|ref|ZP_03568403.1| SAF domain protein [Atopobium rimae ATCC 49626]
 gi|221184535|gb|EEE16927.1| SAF domain protein [Atopobium rimae ATCC 49626]
          Length = 262

 Score = 74.2 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 83/216 (38%), Gaps = 24/216 (11%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTE----EVITENPAKFINVLISKGDLAVGMVVTPN 64
            V+SG  AL+A +  +   +    + E    EVI     + +N++++   +  G  ++ +
Sbjct: 7   FVLSGACALLAVLCCIVYGNQIKAEAEQSRAEVIERYGGEVVNLVVATKPIEAGDTISSS 66

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
             +  ++  +   +G   +        ++ G  V +PI  G P+             +  
Sbjct: 67  NTQVKSWVSDLAPEGSFTNA------DDIMGKQVTIPISAGTPLTKLNFRTNET---TVT 117

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           +PKG    ++     + + G +     +    +     R  +  + L            D
Sbjct: 118 VPKGLVGISISHGEKTGLVGKVAAGTTLAAYEMTDHGIRLLSTQITL----------LSD 167

Query: 185 SDERVLVGST-ATLELTPMQAKALVAAQSVAKLSLV 219
           + E V + ST  T+ + P    ++++A++   L LV
Sbjct: 168 TGESVYISSTPLTVGVLPKDMTSILSAEAKGTLRLV 203


>gi|116671413|ref|YP_832346.1| hypothetical protein Arth_2867 [Arthrobacter sp. FB24]
 gi|116611522|gb|ABK04246.1| hypothetical protein Arth_2867 [Arthrobacter sp. FB24]
          Length = 213

 Score = 74.2 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 27/219 (12%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +VV+ +    AGI   +L            T  PA  +  L +  DLA G  ++ N +  
Sbjct: 14  LVVALLLCAAAGIAVQQL------------TPAPAHTVTALATARDLAAGTALSGNEVVP 61

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
           V  P   V  G + DV        + G  +  P+ KG  I   +L+  G   L +    G
Sbjct: 62  VKVPPGMVPSGAVADVSS------IQGKQLAAPLRKGQLISDTQLLGPG---LLAGTKPG 112

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAI-DHNIDSD 186
             A  + ++  S++  ++ P   V++VM       +     V+ + + V+        + 
Sbjct: 113 SAAVPLRMADPSSIQ-LVAPGQLVNIVMTNGTDFGKTAESQVLAAAVPVLWTSGQGGQTG 171

Query: 187 ERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRS 222
           + +  G T     +   P QA+ L  + +  KL  VL  
Sbjct: 172 QWLGTGETEGLIVVAADPDQARRLAGSSTQGKLFFVLVG 210


>gi|296271147|ref|YP_003653779.1| SAF domain-containing protein [Thermobispora bispora DSM 43833]
 gi|296093934|gb|ADG89886.1| SAF domain protein [Thermobispora bispora DSM 43833]
          Length = 212

 Score = 74.2 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 30/193 (15%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
            P + + VL +  DL  G  ++ + +  V  P + + DG +           + G +V  
Sbjct: 32  APPRGVPVLAAARDLP-GGRLSASDVTVVRLPPDALPDGVLRPGTP------MAGRVVAG 84

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS- 159
           P+ +G+PI   +L+  G   +     +G  A  + I+ +  V  ++ P D VDV+     
Sbjct: 85  PMRRGEPITDVRLLGPG---ILRAQGQGLVATPVRIADAR-VAELLSPGDVVDVLAAFDG 140

Query: 160 -------------LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206
                             P    V   +RV+A     D +  +LV     L  T  QA  
Sbjct: 141 AALGGAYPDDAASGGTAAPASAPVARQVRVLARPPGGDGEGALLV-----LATTVDQAAR 195

Query: 207 LVAAQSVAKLSLV 219
           L  AQ+  +L++ 
Sbjct: 196 LAHAQAHGRLAVA 208


>gi|237733157|ref|ZP_04563638.1| predicted protein [Mollicutes bacterium D7]
 gi|229383701|gb|EEO33792.1| predicted protein [Coprobacillus sp. D7]
          Length = 229

 Score = 74.2 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 37/222 (16%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   L+ I+V+G+  +++G + M  V                    VL++  D+     +
Sbjct: 6   KRISLIIIIVAGL--ILSGSLFMIFVGN---------------TTEVLVATQDVKANTKI 48

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             ++         ++ D ++      ++ +++ G    +   KG  I    +        
Sbjct: 49  KESMFTTERVDTASLPDNYL----SADSAKDVVGYYTYIGFTKGSVISKSNIATSAKKA- 103

Query: 122 SSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--IA 178
           S  + KGK   T+   ++ +     I+  D V++++  +       V     NI V  I 
Sbjct: 104 SGAIEKGKTLLTISAENLPTG----IQSGDKVNIIIGANTDSGNKVVLT-YQNIDVSNIY 158

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +D     DE  + G   +  +TP Q++ +V A+   +LS+ L
Sbjct: 159 VD-----DEGSITGLEVS--VTPEQSQKIVYAKLNGELSISL 193


>gi|260892674|ref|YP_003238771.1| SAF domain protein [Ammonifex degensii KC4]
 gi|260864815|gb|ACX51921.1| SAF domain protein [Ammonifex degensii KC4]
          Length = 214

 Score = 74.2 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 88/239 (36%), Gaps = 42/239 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +   ++      + AG +A  L +    +T             VL++K D+     
Sbjct: 1   MTRQKFFFLMAVLAGLVAAGSLAWLLSAFLPQKT-------------VLVAKSDVPARGP 47

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR---G 117
           VT   +E V+ P+  +    + +        EL G + R  I  G  +R   L  +   G
Sbjct: 48  VTE--VEAVSLPKAGLPPDAVTE------RGELAGKVARGFIPAGTVLRRAMLQPKWAAG 99

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
             G  + +  G R   + ++  + VGG +   D +DV +VR          +V +++ V 
Sbjct: 100 AAGALAEIGPGYRMLALPLTADTTVGGCVASGDRIDVYLVRGGR-----AELVAADVLVF 154

Query: 178 A------------IDHNIDSDERVLVGSTATLELTPMQAKALVAA-QSVAKLSLVLRSI 223
           +                   D       +  + + P +A+ LV+A     KL  VLR +
Sbjct: 155 SGPGVPSREGKKGFGALTGGDREQEKRDSLVVVVRPDEAERLVSALGGDGKLVAVLRPL 213


>gi|190574778|ref|YP_001972623.1| putative transmembrane fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012700|emb|CAQ46328.1| putative transmembrane fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
          Length = 345

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 85/270 (31%), Gaps = 52/270 (19%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KLTR+  + + G+  L+A I  M         T   + ++ A+ I V+ +   L  G  
Sbjct: 2   LKLTRIAAVALIGLAVLLAVIALMIGRKQAAPATVAPVAQSEAQAITVVEAVARLPAGEP 61

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++ N +            G         ++  + G +    I +G  I    L      G
Sbjct: 62  ISANGVRLAQ--RTTPVAGAAT------SISAVVGKVPVQDIAEGTAISSGALAQ----G 109

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----------------VRSLSER 163
            S  L  G+RA  + +      G  I P D VDV +                  R L  R
Sbjct: 110 FSLQLRPGERALAIPVDELVGAGNRILPGDFVDVFLNLRNAQPNASGPAEAAQTRLLLSR 169

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDE-----------------------RVLVGSTATLELT 200
              ++    +I  +  D    ++                              +A L + 
Sbjct: 170 LRVLSYGQQDIAPVTGDAVAGNEGDTRNDPRAADITGNGSNHGSGNETTQPARSAVLAVP 229

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              A  L+      KL L LR+ AD     
Sbjct: 230 VADANRLLLGAQQGKLFLALRNPADTGQPD 259


>gi|83589202|ref|YP_429211.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073]
 gi|83572116|gb|ABC18668.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073]
          Length = 229

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 46/228 (20%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
            ++ I+     A+ +GI   R +S H                 V++   ++     + P 
Sbjct: 20  AILAIIFGLAVAVASGIYYQRYISTHQA------------MTQVIVPAHNINAYTQIKPG 67

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            L W   P   V  G            +L G +    + +G+ +RLE++ +         
Sbjct: 68  DLTWRQVPVGAVEPGTARKP------DDLVGKVALAELYQGEQVRLERVGEVST------ 115

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA------ 178
               K+   ++I ++ + GG   P D VDV    + +       ++ SN R++       
Sbjct: 116 --DDKQVVAVNIDLARSGGGYFSPGDLVDVYFAETENVPGA---ILASNARLLQLVDAQG 170

Query: 179 -----------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215
                      +     S +     + A L ++P     +    +   
Sbjct: 171 NPITLNQQGGLLQQASQSAQAPRTPAVAVLAVSPADIPQVTRGAANGS 218


>gi|239979686|ref|ZP_04702210.1| hypothetical protein SalbJ_09627 [Streptomyces albus J1074]
          Length = 235

 Score = 73.8 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 23/214 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K D+A    ++ +  E V+ PE    +  + D      ++++ G +
Sbjct: 33  VNAKVGPEVPAYRLKTDVAPYKELSADQFEKVSMPERWRSENAVTD------LRQIRGKI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + +G  ++ + +V R        +  G++   + I  ++ V G I P   V++   
Sbjct: 87  AVTTLRQGSLLQTDMIVARPE------VRPGEQEIAIMIDAATGVAGKITPGSDVNIYAT 140

Query: 158 RSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208
                   K    +++ N RVI +           D   + +     T  L+   A+ + 
Sbjct: 141 FKAENDGEKDQSRIIVENARVIDVGKLTALEPDQDDRRRQPVDAVPITFALSAADAQRVA 200

Query: 209 AAQS-VAKLSLVLRSIA-DLNPSSSEDSDVWDVQ 240
            A+S  A + L L     D      + +   D  
Sbjct: 201 YAESFAAHVRLALVGPGSDEGLRRGDRTYTLDED 234


>gi|291451551|ref|ZP_06590941.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354500|gb|EFE81402.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 210

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 23/214 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K D+A    ++ +  E V+ PE    +  + D      ++++ G +
Sbjct: 8   VNAKVGPEVPAYRLKTDVAPYKELSADQFEKVSMPERWRSENAVTD------LRQIRGKI 61

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + +G  ++ + +V R        +  G++   + I  ++ V G I P   V++   
Sbjct: 62  AVTTLRQGSLLQTDMIVARPE------VRPGEQEIAIMIDAATGVAGKITPGSDVNIYAT 115

Query: 158 RSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208
                   K    +++ N RVI +           D   + +     T  L+   A+ + 
Sbjct: 116 FKAENDGEKDQSRIIVENARVIDVGKLTALEPDQDDRRRQPVDAVPITFALSAADAQRVA 175

Query: 209 AAQS-VAKLSLVLRSIA-DLNPSSSEDSDVWDVQ 240
            A+S  A + L L     D      + +   D  
Sbjct: 176 YAESFAAHVRLALVGPGSDEGLRRGDRTYTLDED 209


>gi|290957849|ref|YP_003489031.1| hypothetical protein SCAB_33831 [Streptomyces scabiei 87.22]
 gi|260647375|emb|CBG70480.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 238

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 94/255 (36%), Gaps = 30/255 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+V+  + AL A      ++S         +       +     KGD+A    
Sbjct: 1   MNSRQRRGVVLLVLSALCALAAFAGVLS-----VIRDVNAKVGPEVTAYRLKGDIAPYKE 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T +  E ++ PE  +    + D      + E+ G +    + KG  ++ + +VDR    
Sbjct: 56  LTADQFERISMPERWLSGTAVTD------LSEIRGKIAVNQLRKGSLLQSDMIVDRPE-- 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSNIRVI 177
               L  G++   + I  S+ V G I P   V++           +K T  +++++ RVI
Sbjct: 108 ----LEAGQQEIAILIDASTGVAGKINPGSRVNIYATFEEKDSDSKKDTSKLMVTDARVI 163

Query: 178 AIDH---------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLN 227
            +           + D           T  L    A+ +  A+S A+ + L L    +  
Sbjct: 164 DVGKLTPLESGQSSSDRRRTATEAVPITFALDTADAQRVAFAESFAEHVRLALVGGGEAT 223

Query: 228 PSSSEDSDVWDVQEE 242
               +D      +++
Sbjct: 224 VVVPDDRSYTLDEDK 238


>gi|333024721|ref|ZP_08452785.1| putative flp pilus assembly protein CpaB [Streptomyces sp. Tu6071]
 gi|332744573|gb|EGJ75014.1| putative flp pilus assembly protein CpaB [Streptomyces sp. Tu6071]
          Length = 236

 Score = 73.0 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 95/250 (38%), Gaps = 30/250 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ +V+S V AL+A +  + +V   + +  +  T    K         D+A    + 
Sbjct: 6   RRGVVLMVLSAVCALIALVGVLGVVRNVNSKVGDEKTAYRLKD--------DIAPYKSLD 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            +  E V+ PE  + D  +        +  L G +    + KG  ++ + +V+R      
Sbjct: 58  ASQFEKVSVPERWLPDTAVTR------LGALRGKIAVTTLHKGSLLQDDMIVNRPA---- 107

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180
             L  G++   + I  ++ V G I P   V++          +K    +++   +V+ + 
Sbjct: 108 --LRAGEQEIAIMIDAATGVAGKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLDVG 165

Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSE 232
                     D+  R       T  L    A+ +  A+S A  + L L    +  P+++ 
Sbjct: 166 KLTPFDQNNDDNRNRSTEAVPITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAAAG 225

Query: 233 DSDVWDVQEE 242
               + + ++
Sbjct: 226 PDRTYTLDKD 235


>gi|119963620|ref|YP_948619.1| Flp pilus assembly protein [Arthrobacter aurescens TC1]
 gi|119950479|gb|ABM09390.1| putative Flp pilus assembly protein CpaB family [Arthrobacter
           aurescens TC1]
          Length = 248

 Score = 73.0 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 96/239 (40%), Gaps = 32/239 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK TRL+G +V+ V A+V  ++ +       VQ  +   +   + ++VL+ +  +  G  
Sbjct: 1   MK-TRLLGGIVAVVLAIVGTLLLVTY-----VQAADARAQKDLQPVDVLVIQSQVPEGAD 54

Query: 61  VT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
           +    + ++  + P  +V +G +       ++  ++G +    ++ G+ +   +LVD  +
Sbjct: 55  LQQIKSAVKLASLPAASVPNGALK------SLSGMEGKVAGAELMPGEALLGNRLVDPNS 108

Query: 119 GGL--SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSN 173
                S  +P G +  ++ +     VGG +   D V VV++   + +  T     +V   
Sbjct: 109 LAAPGSVPVPDGLQEVSVQLDAQRVVGGRLAAGDTVGVVVLVGENGQSDTDASAQLVFHK 168

Query: 174 IRVIAIDHNIDSDERVLVGST-------------ATLELTPMQAKALVAAQSVAKLSLV 219
           + V ++      +      S+              TL  + + A  +V       + L 
Sbjct: 169 VLVTSVQRATARNSNTAQASSEQANTQLPEGSFIVTLARSDVDATKIVYGAKYGDIWLT 227


>gi|302387867|ref|YP_003823689.1| SAF domain protein [Clostridium saccharolyticum WM1]
 gi|302198495|gb|ADL06066.1| SAF domain protein [Clostridium saccharolyticum WM1]
          Length = 283

 Score = 73.0 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 21/192 (10%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
              + ++    ++  G  +T  ++  V     N+    I         +++ G      +
Sbjct: 35  QSKVELVRVTTEIKKGDEITAGMITAVETGGYNLPSDVI------YKKEDVIGKFANADL 88

Query: 103 LKGDPIRLEKLVDRG---NGGLSSLLPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVR 158
            KGD I   KL D     N  LS  L    RA ++ I   ++ + G ++  D V ++   
Sbjct: 89  YKGDYILKSKLSDTPQLKNEYLSG-LDGTNRAISVTIKSFAAGLSGKLERGDIVSLIASD 147

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSD----------ERVLVGSTATLELTPMQAKALV 208
               RK  +   L  + +IA   +  +D          E   + ST T+ +TP QA+ L 
Sbjct: 148 VGEARKTLILDELQYVEIIATTDSSGNDRNIQEQPKDNEDTELASTITVLVTPQQARLLA 207

Query: 209 AAQSVAKLSLVL 220
             +   KL   L
Sbjct: 208 ELEQTGKLHAAL 219


>gi|271969844|ref|YP_003344040.1| hypothetical protein Sros_8655 [Streptosporangium roseum DSM 43021]
 gi|270513019|gb|ACZ91297.1| hypothetical protein Sros_8655 [Streptosporangium roseum DSM 43021]
          Length = 205

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 16/178 (8%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +     + VL +  DL  G V+    L+ VA   + V DG +           + G ++ 
Sbjct: 36  KPDTASVTVLAAARDLPSG-VLEAADLKAVALRPDTVPDGAVKPG------TAIAGRVLA 88

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            P+ +G+P+   +++      L +    G  A  + ++       ++ P D VDV+   S
Sbjct: 89  GPMRRGEPLTDARILGP---SLLAAHGPGTVATPVRVADPET-ARLLSPGDVVDVLAAPS 144

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
             E       V  ++ V+        D     G+   L  T  QA  L +AQ+   LS
Sbjct: 145 TWEGAAPARTVAEDVTVL-----TTPDGEADRGALLVLATTSDQAVELASAQAGGHLS 197


>gi|307324474|ref|ZP_07603682.1| Flp pilus assembly protein CpaB [Streptomyces violaceusniger Tu
           4113]
 gi|306890205|gb|EFN21183.1| Flp pilus assembly protein CpaB [Streptomyces violaceusniger Tu
           4113]
          Length = 234

 Score = 72.6 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 29/249 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ +++S + A+ A   A  L   + V+++        K  +      D+     + 
Sbjct: 6   RRGVILLLLSVLCAVGA--FAGVLSVVNDVESKVGPETTAYKLTS------DVKPYKALD 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
               E V+ P+  V    + D      + EL G +    + KG  ++ + + +R      
Sbjct: 58  AGEFEKVSMPKRYVPSTAVTD------LAELRGKIAVTQLAKGSLLQRDMIANRPA---- 107

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVI--- 177
             L  G++   + I  ++ V G I P   V++      S    KP   ++++   V+   
Sbjct: 108 --LKPGQQEIAIMIDAATGVAGKITPGAEVNIYATFEGSTQGEKPVSKLIVAGAEVLDLG 165

Query: 178 ---AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSED 233
              A++ N D   R+      T  L    A+ +  A+S A  + L L +          D
Sbjct: 166 RITALEPNQDDKRRINEAVPITFALDTKNAQRVAYAESFASHVRLALVAPGGGTSIGPGD 225

Query: 234 SDVWDVQEE 242
                  ++
Sbjct: 226 RTYTLDGDK 234


>gi|89892806|ref|YP_516293.1| hypothetical protein DSY0060 [Desulfitobacterium hafniense Y51]
 gi|89332254|dbj|BAE81849.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 274

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 26/223 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  ++  ++    V+P   ++        ++   ++    ++  G  +T + ++ V 
Sbjct: 9   VVGVICILLSLLICFGVTPLFNKSV-------SQKTEIVRVVKEIKAGDEITKDTVQTVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
                + D  I         + + G   +  +  GD I   KL D      + L  L   
Sbjct: 62  VGGFGLPDNVIRQS------ETVIGKYAKSDLSIGDYILNTKLSDTPAAENAYLYNLDGT 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ I   ++ + G ++  D V V+      +    +   L  + VI++        
Sbjct: 116 KQAMSVTIKSFANGLSGKLQSGDIVSVIAADYKKQGTTVIPAELKYVEVISVTASSGYDA 175

Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                   D+   + ST TL ++P Q+K L   +S  KL L L
Sbjct: 176 NTGEAKSEDDDRELPSTVTLLVSPEQSKVLAELESDGKLHLSL 218


>gi|218848027|ref|YP_002454867.1| hypothetical secreted protein [Bacillus cereus G9842]
 gi|218546158|gb|ACK98551.1| hypothetical secreted protein [Bacillus cereus G9842]
          Length = 303

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 16/177 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M L     I  +   A+VAG+     +           TE+  K + V+++K D+A    
Sbjct: 1   MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T +++    FP   +         +       DG      I     +   KL       
Sbjct: 51  ITADMIAEKEFPVSGIPPKTALKKEEVLGKWTKDG----YGIAANSYMNSTKLAKEEELT 106

Query: 121 LSSLL--PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
            + ++   +G+ A T+ + I ++ G  I PN +VD+ +  +L   K    V + N+ 
Sbjct: 107 DAGVISLKEGEHAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLE 163


>gi|229816461|ref|ZP_04446762.1| hypothetical protein COLINT_03515 [Collinsella intestinalis DSM
           13280]
 gi|229808003|gb|EEP43804.1| hypothetical protein COLINT_03515 [Collinsella intestinalis DSM
           13280]
          Length = 226

 Score = 72.2 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 85/222 (38%), Gaps = 22/222 (9%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK----FINVLISKGDLAVG 58
           + R + + +S V  L A ++A   V+  H + E+       +       V ++  ++  G
Sbjct: 1   MKRTVRLGLSAVMGLSAALLAWSAVAGAHAEAEQASRRALERYGGDVTRVCVALREIEPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             ++   ++ V +    + +  +       +M +  G++    I    P+     +    
Sbjct: 61  DEISEGNVKVVEWVSSLMPEDALT------SMGDASGLVATARIPAHTPLAKAHFLRDER 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 +P+G  A ++      AVGG +   D VDV +  +    +      L+   V+ 
Sbjct: 115 V---VQVPRGTVAISVASDAEHAVGGSLARGDEVDVYVADASVADR------LTRAEVLD 165

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                D    +   S  TL +     + ++AA +  +++LVL
Sbjct: 166 TSVLADGGGDL---SWVTLAVDASAVRDVLAATTRGEVTLVL 204


>gi|269957599|ref|YP_003327388.1| SAF domain-containing protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306280|gb|ACZ31830.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 227

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 23/209 (11%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++           T +V+   P    +V++    L  G+ +    L  V+ P     DG 
Sbjct: 31  LLVALCCGIAASSTVQVLRPAPPPMRSVVVPTHRLEPGVELRAGDLTVVSVPAALAPDGA 90

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           + D        +  G +  V +  G P+    +     G +++L P G     + +  ++
Sbjct: 91  LTDTA------DAVGRVPAVALEAGLPLSASLVAG---GEVAALAPTGTVVVPVRLDDAT 141

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--------G 192
           A   +++  D VD+V   SL    P    +   + V+                       
Sbjct: 142 AA--LLRAGDRVDLVSTASLD---PEAAYLARRVLVLTPGSRAAEGGGASGLLGGAVSDA 196

Query: 193 STATL-ELTPMQAKALVAAQSVAKLSLVL 220
              TL  ++P +A  L AA     ++ VL
Sbjct: 197 PVVTLVAVSPAEAPGLSAASGAGTVAAVL 225


>gi|317123663|ref|YP_004097775.1| Flp pilus assembly protein CpaB [Intrasporangium calvum DSM 43043]
 gi|315587751|gb|ADU47048.1| Flp pilus assembly protein CpaB [Intrasporangium calvum DSM 43043]
          Length = 267

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 87/238 (36%), Gaps = 32/238 (13%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVTP----NILEWVAFPEENVFDGFIDDVH 85
           ++V+  +       +   V +++  +  G  +       ++            G +DD++
Sbjct: 24  NYVRGADARAIADQQPAKVYLAEKLIPAGTTLKDAQRTELIVETRVATVARPQGALDDIN 83

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
             N+      +L    I  G+ +   +   R  G  +  +P G  A ++++S  + +G  
Sbjct: 84  PENSA-----LLALSDIQPGEFVMASRFGTRPVGEKAIEVPAGMLAMSVELSDPARIGKF 138

Query: 146 IKPNDHVDVVMVRS---LSERKPT----------VTVVLSNIRVIAIDHN-IDSDERVLV 191
           + P   + +        + E   T           TV+L  ++VIA+    + + ++   
Sbjct: 139 VTPGSDIAIFATHGMKLIGEDDATKAFNELNLKGTTVLLDKVQVIAMGDTPLAAPKKAEA 198

Query: 192 GST--------ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
           G           T+ +TP Q+  L    +   L   LR  +D+   +   +D  D+  
Sbjct: 199 GKADEQTPSFLVTVAVTPEQSLRLAHGINEYTLYAGLRG-SDVKIPADGHTDDSDIFS 255


>gi|228989141|ref|ZP_04149159.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228770568|gb|EEM19115.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 303

 Score = 71.5 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 20/179 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M L     I  +   A+VAG+     +           TE+  K + V+++K D+A    
Sbjct: 1   MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +T +++    FP   +              +++ G   +    I     +   KL     
Sbjct: 51  ITADMIAEKEFPVSGIPP------KTALKKEDVLGKWTKDGYGIAANSYMNSTKLAKEEE 104

Query: 119 GGLSSLL--PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
              + ++   +G+ A T+ + I ++ G  I PN +VD+ +  +L   K    V + N+ 
Sbjct: 105 LTDAGVISLKEGEYAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLE 163


>gi|160941850|ref|ZP_02089177.1| hypothetical protein CLOBOL_06746 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435347|gb|EDP13114.1| hypothetical protein CLOBOL_06746 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score = 71.5 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 85/222 (38%), Gaps = 25/222 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V G+  +V  +    L +P   Q         ++  +++  +  +  G  +T + ++ V 
Sbjct: 9   VLGILCIVLSLAICFLATPLFNQAI-------SEKTDIVRVQKAIKAGDEITKDKVQMVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGNGGLSSLLPKG 128
               N+ +  + D      +  + G      +L GD +   K+     G       L   
Sbjct: 62  VGGYNLPENVMKD------LGSVVGAYATADLLPGDYVLYSKISVQPPGADTYLYQLDGT 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI---- 183
           K+A ++ +   ++ V G ++  D V ++        +  +   L  ++VIA+  +     
Sbjct: 116 KQAISVTVKSFAAGVSGKLRSGDIVSILAPDYRKMGETVIPQELQYVQVIAVTASTGVDA 175

Query: 184 -----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                D ++   + +T TL  TP+Q K L   ++   L   L
Sbjct: 176 NTAGGDKEKEKSLPATLTLLATPIQCKVLAELETEGNLHAAL 217


>gi|209546007|ref|YP_002277897.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538864|gb|ACI58797.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 312

 Score = 71.5 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 14/155 (9%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++ + +  L+ G++           TE V  E  A     L     +  G  +TP++L  
Sbjct: 5   LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAE 57

Query: 69  -VAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            V  PE     G +  +  P A      L        I  G  +  +   D   G L+++
Sbjct: 58  PVMLPESF---GALAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDNDGGRLTTM 114

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           +  GKRA T+ ++ +SAVG  ++P  +VD++    
Sbjct: 115 IAPGKRALTLPVNAASAVGHFVEPGSYVDILGTVD 149



 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVA 214
           S  +      L N++V+A+     ++  V   ++     T+E+TP +A+ L+ A  QS  
Sbjct: 228 SRTRVVTRTFLQNVKVLAVGAATTAEGAVTKANSTYNNVTVEVTPAEAEMLIFAMGQSNG 287

Query: 215 KLSLVLRSIADLNPSS 230
            L+LVLR+ AD     
Sbjct: 288 SLNLVLRNPADNTVEE 303


>gi|156975625|ref|YP_001446532.1| hypothetical protein VIBHAR_03358 [Vibrio harveyi ATCC BAA-1116]
 gi|156527219|gb|ABU72305.1| hypothetical protein VIBHAR_03358 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score = 71.5 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 78/197 (39%), Gaps = 24/197 (12%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVIT------ENPAKFINVLISKGDLAVGMVVT 62
           +V + +  LV GI     ++ H  Q    ++      E  A ++ V  +K +L  G  + 
Sbjct: 1   MVFALLALLVGGIGIYSHMTAHPQQQNPTVSQSSNSDEPQAHYVQVWRAKSNLERGTPIE 60

Query: 63  PNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNGG 120
            + ++         + +G   D+    +   L        I  G  +  E ++ +     
Sbjct: 61  IDDVQKEQMLLNIALEEGINSDIKLDFSPSTLLSK----NIEAGKIVFSEYQVKENDPRY 116

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTVT 168
           +  L+ +GK   ++ +S  + V G I+P  +VDV+ V S  E                  
Sbjct: 117 IDLLITEGKEPYSLLVSTRNLVKGYIRPGTNVDVLSVGSPKENLADEDTDAIDFSGVNAQ 176

Query: 169 VVLSNIRVIAIDHNIDS 185
           ++L N++V+++ +  + 
Sbjct: 177 LILRNVKVLSVGNTKEP 193


>gi|228949326|ref|ZP_04111589.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810309|gb|EEM56667.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 303

 Score = 71.5 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 20/179 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M L     I  +   A+VAG+     +           TE+  K + V+++K D+A    
Sbjct: 1   MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118
           +T +++    FP   +              +++ G   +    I     +   KL     
Sbjct: 51  ITADMIAEKEFPVSGIPP------KTALKKEDVLGKWTKDGYGIAANSYMNSTKLAKEEE 104

Query: 119 GGLSSLL--PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
              + ++   +G+ A T+ + I ++ G  I PN +VD+ +  +L   K    V + N+ 
Sbjct: 105 LTDAGVISLKEGEYAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLE 163


>gi|282865299|ref|ZP_06274351.1| Flp pilus assembly protein CpaB [Streptomyces sp. ACTE]
 gi|282559772|gb|EFB65322.1| Flp pilus assembly protein CpaB [Streptomyces sp. ACTE]
          Length = 237

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 88/252 (34%), Gaps = 30/252 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ +++S + A  A    + ++S  + +    +     K         D+A    + 
Sbjct: 6   RRGVILLLLSVLCAFGAFAGVLSVISDVNAKVGPEVAAYQVKT--------DVAPYTTLE 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
           P   E V  P+  +    + D+        ++G +    +  G  ++ + LV R      
Sbjct: 58  PGQFEKVTMPKRWLSRNAVTDLAV------INGKIAVTRLHAGSLLQDDMLVKRP----- 106

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180
             +  G++   + I  ++ V G I+P + V++           K T  V++ N +VI + 
Sbjct: 107 -RVENGEQEIAIMIDAATGVAGKIRPGNLVNIFATFAGENEGEKATSRVIVPNAKVIDVG 165

Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSE 232
                          +      T  L    A+ +  A+S A+ + L L            
Sbjct: 166 ELTALEPKKDQRGSGLTEAVPITFALNTTDAQRVAYAESFAEHVRLALLPENSPTTLRPG 225

Query: 233 DSDVWDVQEEGK 244
           +      +++ K
Sbjct: 226 EGSYSLDEDKNK 237


>gi|294631139|ref|ZP_06709699.1| flp pilus assembly protein CpaB [Streptomyces sp. e14]
 gi|292834472|gb|EFF92821.1| flp pilus assembly protein CpaB [Streptomyces sp. e14]
          Length = 235

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 78/201 (38%), Gaps = 22/201 (10%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           K D+     ++ +  E +  P+  +    + D+ +      + G +    + +G  ++ +
Sbjct: 47  KTDVKPYTTLSADQFEKIKMPKRWLSPNAVTDLSR------IRGKIAVTTLRQGSLLQSD 100

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169
            +VD+        L  G++   + I  ++ V G I P   V+V                +
Sbjct: 101 MIVDQPA------LRPGQQEVAIMIDAATGVAGKITPGSSVNVYATFAGQRQGDPAQSKI 154

Query: 170 VLSNIRVI------AIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLR 221
           +++  +V+      A+D N D   ++       T  L+ + A+ +  A+S A ++ L L 
Sbjct: 155 IVTGAKVLDVGRITALDPNSDNRSQQPSEVVPITFALSALDAQRITYAESFAQRVRLALV 214

Query: 222 SIADLNPSSSEDSDVWDVQEE 242
           +        + D      +++
Sbjct: 215 APGGDAGVPAGDRTYELAKDK 235


>gi|86360427|ref|YP_472315.1| hypothetical protein RHE_PE00151 [Rhizobium etli CFN 42]
 gi|86284529|gb|ABC93588.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 309

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 8/154 (5%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++ + +  L+ G++          +              V         G  +TP++L  
Sbjct: 5   LIAAVIVGLITGVLLYFWTESVKNEQVAYAFMRLQPDKKV-------TRGQAITPDMLAE 57

Query: 69  -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
            V  PE       +         + L        I  G  +  +   D   G L++++  
Sbjct: 58  PVMLPESFGPLAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDTDGGRLTTMIAP 117

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           GKRA T+ ++ + AVG  ++P  +VD++      
Sbjct: 118 GKRALTLPVNAAEAVGHFVEPGSYVDILGTVDEP 151



 Score = 66.5 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVA 214
           S  +      L N++V+A+      +  V   ++     T+E+TP +A+ L+ A  Q+  
Sbjct: 225 SRTRVVTRTFLQNVKVLAVGAATTPEGAVTKANSSYNHVTVEVTPSEAEMLIFAMGQANG 284

Query: 215 KLSLVLRSIADLNPSS 230
            L+LVLR+  D +   
Sbjct: 285 SLNLVLRNPTDNSVED 300


>gi|54309659|ref|YP_130679.1| hypothetical protein PBPRA2495 [Photobacterium profundum SS9]
 gi|46914097|emb|CAG20877.1| Hypothetical protein PBPRA2495 [Photobacterium profundum SS9]
          Length = 284

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 35/244 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  I    V   + G +A  L+S     +  V  E   K+I V  +   LA G  
Sbjct: 1   MNSKIIFVIAFLAVLTGLYG-MADTLLSTTDTASPPVTEEKEIKYITVWRATSALARGQT 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++P+ L      EE      I+     N        L+ + + +G  +  E     G  G
Sbjct: 60  LSPSSLTREQLTEEAALSLGINSDVTLNFEPT---TLMNMDVKQGALVFPELQTSPGQAG 116

Query: 121 LSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN------ 173
             +L+ +G      + I+  + +   I+P D++D++ V S        T  L N      
Sbjct: 117 YLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENFEGVRA 176

Query: 174 ------IRVIAIDHN----IDSDERVLVG--------------STATLELTPMQAKALVA 209
                 IRV+++  +      +D+R  +               ST  +E+ P     L  
Sbjct: 177 SLLMRRIRVMSVGQSNTLAEKADQRATITSTIRPKVNISNENESTVVIEVNPDDLAKLSL 236

Query: 210 AQSV 213
           AQ  
Sbjct: 237 AQRT 240


>gi|303241416|ref|ZP_07327919.1| SAF domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591025|gb|EFL60770.1| SAF domain protein [Acetivibrio cellulolyticus CD2]
          Length = 255

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 88/235 (37%), Gaps = 28/235 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKL  +      G+  +V  +    +++P      +  TE       ++    D+  G V
Sbjct: 1   MKLNFIKSRTAIGLICIVLSLFICFILTPMFNSGLKAQTE-------IIRISSDMKKGEV 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  N LE V     N+    I         +++ G  V   ++KGD I   K+ D+    
Sbjct: 54  IAGNKLEVVKVGAYNLPQNIIKR------KEDVVGKYVNCDLMKGDYILSSKVTDKPLLE 107

Query: 121 LSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              L  L   K A ++ I   ++ + G ++  D V ++     +    T+   L  ++V+
Sbjct: 108 FEYLNDLDGTKVAMSITIKSFAAGLSGKLESGDIVTLISSNYDNMGSATIPSELKYVKVL 167

Query: 178 A------ID-HNID-----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           A      +D           D+   + ST TL +   QAK L   +    +   L
Sbjct: 168 AATTESGMDKQQAQAEIKKEDKETELPSTLTLIVNTEQAKVLADLEQKGNIHATL 222


>gi|284033647|ref|YP_003383578.1| SAF domain-containing protein [Kribbella flavida DSM 17836]
 gi|283812940|gb|ADB34779.1| SAF domain protein [Kribbella flavida DSM 17836]
          Length = 203

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 69/184 (37%), Gaps = 20/184 (10%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
            ++  PA    VL +  DL  G+      +  +  P   V  G +          +L   
Sbjct: 35  AVSPPPAASTPVLAAARDLPGGLTPAAGDIRTLRLPTSTVPAGVL------PPGTDLSHR 88

Query: 97  LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           ++   +  G+P+   + +        + +P G  A  + +  +  +  +++P D +D+  
Sbjct: 89  VLATAVRSGEPLTDARFLTP------TAVPPGLLAYPLRLDDAD-IAALLRPGDRIDLYA 141

Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
             + ++   T   +   + ++A+            G+   L  +P  A  L  A +  +L
Sbjct: 142 ASATADASATR--LAEAVPILAL-----PAPTRSTGALVVLAASPGTAARLAQASANTRL 194

Query: 217 SLVL 220
           ++ L
Sbjct: 195 TVAL 198


>gi|89100212|ref|ZP_01173079.1| hypothetical protein B14911_20170 [Bacillus sp. NRRL B-14911]
 gi|89085062|gb|EAR64196.1| hypothetical protein B14911_20170 [Bacillus sp. NRRL B-14911]
          Length = 274

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 67/178 (37%), Gaps = 20/178 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++ I+VS + A  AG           +Q    +         V ++  D+    ++
Sbjct: 5   KRRAIIFILVSVLLAAAAGFFV--------LQKVSALNSELGGMTEVYVAASDIPSRTLI 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               ++ V  P   V +  + +V      ++L   ++ VP+   D I    +       +
Sbjct: 57  EREQVKTVEIPNRYVNNSHVTNV------EDLINKVLVVPVAAEDVITKTMIKP-----V 105

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
           S++  +  R   +  S        ++  D VD+++    ++ KP     + ++ V A+
Sbjct: 106 SNVRDENNRLVMIPQSDKVNFDQQLEALDRVDIIVSHKFND-KPVTETFMKDVPVAAV 162


>gi|325288260|ref|YP_004264441.1| Flp pilus assembly protein CpaB [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963661|gb|ADY54440.1| Flp pilus assembly protein CpaB [Syntrophobotulus glycolicus DSM
           8271]
          Length = 274

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 26/223 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  ++  ++    V+P   ++        ++   ++    ++  G  +T + ++ V 
Sbjct: 9   VVGVICILLSLLICFGVTPLFNKSV-------SQKTEIVRVVKEIKAGDEITKDTVQTVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
                + D  I           + G   +  +  GD I   KL D      + L  L   
Sbjct: 62  VGGFGLPDNVIRQSEM------VIGKYAKSDLSIGDYILNTKLSDTPAAENAYLYNLDGT 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ I   ++ + G ++  D V V+      +    +   L  + VI++        
Sbjct: 116 KQAMSVTIKSFANGLSGKLQSGDIVSVIAADHKKQGSTVIPAELKYVEVISVTASSGYDA 175

Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +   + ST TL ++P Q+K L   ++  KL L L
Sbjct: 176 NTGEAKSEKDERELPSTVTLLVSPEQSKVLAELEADGKLHLAL 218


>gi|318057607|ref|ZP_07976330.1| Flp pilus assembly protein CpaB [Streptomyces sp. SA3_actG]
 gi|318080518|ref|ZP_07987850.1| Flp pilus assembly protein CpaB [Streptomyces sp. SA3_actF]
          Length = 225

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 93/244 (38%), Gaps = 30/244 (12%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +V+S V AL+A +  + +V   + +  +  T    K         D+A    +  +  E 
Sbjct: 1   MVLSAVCALIALVGVLGVVRNVNSKVGDEKTAYRLKD--------DIAPYKSLDASQFEK 52

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
           V+ PE  + D  +        +  L G +    + KG  ++ + +V+R        L  G
Sbjct: 53  VSVPERWLPDTAVT------QLGALRGKIAVTTLHKGSLLQDDMIVNRPA------LRAG 100

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHNI--- 183
           ++   + I  ++ V G I P   V++          +K    +++   +V+ +       
Sbjct: 101 EQEIAIMIDAATGVAGKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLDVGKLTPFD 160

Query: 184 ----DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSDVWD 238
               D+  R       T  L    A+ +  A+S A  + L L    +  P+++     + 
Sbjct: 161 QNNDDNRNRSTEAVPITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAAAGPDRTYT 220

Query: 239 VQEE 242
           + ++
Sbjct: 221 LDKD 224


>gi|295836768|ref|ZP_06823701.1| flp pilus assembly protein CpaB [Streptomyces sp. SPB74]
 gi|295826199|gb|EFG64734.1| flp pilus assembly protein CpaB [Streptomyces sp. SPB74]
          Length = 225

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 77/201 (38%), Gaps = 22/201 (10%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           K D+A    +  +  E V+ P+  + D  + +      +  L G +    + +G  ++ +
Sbjct: 36  KNDIAPYKSIDASQFEKVSVPKRWLPDTAVTE------LGALRGKIAVTTLHRGSLLQDD 89

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTV 169
            +V+R        L  G++   + I  ++ V G I P   V++          +K    +
Sbjct: 90  MIVNRPA------LRAGEQEIAIMIDAATGVAGKITPGSSVNIYATFKAQNEGQKDESRL 143

Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTATLELTP-------MQAKALVAAQSVAK-LSLVLR 221
           ++   +V+ +      D+        T E  P         A+ +  A+S A  + L L 
Sbjct: 144 IVERAQVLDVGKLTPFDQNNDDNRNRTTEAVPITFGLGTGDAQRVAYAESFATHVRLALV 203

Query: 222 SIADLNPSSSEDSDVWDVQEE 242
              +  P+++     + + ++
Sbjct: 204 GAGEQPPAAAGPDRTYTLDKD 224


>gi|29829798|ref|NP_824432.1| hypothetical protein SAV_3256 [Streptomyces avermitilis MA-4680]
 gi|29606907|dbj|BAC70967.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 209

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 28/209 (13%)

Query: 50  ISK----GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           ++      D+A    ++ +  E V+ P   +    + D+ Q      + G +    + KG
Sbjct: 13  VAAYRLRNDIAPYKELSADQFEKVSMPRRWLSKTAVTDLAQ------IRGKIAVTQLEKG 66

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS--LSER 163
             ++ + +VDR        L  G++   + I  S+ V G I P   V++         + 
Sbjct: 67  SLLQTDMIVDRPA------LAAGQQEIAIMIDASTGVAGKINPGSRVNIYATFKAPSDKG 120

Query: 164 KPTVTVVLSNIRVI------AIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVA 214
           K    V++ N RV+      A+D    SD+R    S     T  L    A+ +  A+S A
Sbjct: 121 KDQSKVIVENARVLDVGKLTALDPGQSSDQRRRTASEAVPITFALDTADAQRVAYAESFA 180

Query: 215 K-LSLVLRSIADLNPSSSEDSDVWDVQEE 242
           + + L L +          D      +++
Sbjct: 181 EHVRLALVAGGSGTTVPPGDRSYTLDEDK 209


>gi|299889217|dbj|BAJ10317.1| hypothetical protein [Streptomyces lavendulae subsp. lavendulae]
          Length = 233

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 81/204 (39%), Gaps = 24/204 (11%)

Query: 49  LIS---KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           +++   KGD+A    ++    E V  P+  + D  + D      +  L G +    + KG
Sbjct: 41  VVAYRVKGDIAPYSALSAGQFEEVKVPKRWLSDTAVSD------LGSLQGKIALTTLKKG 94

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
             ++ +  VD+        L  G++   + I  ++ V G I     V+++     ++   
Sbjct: 95  SLLQSDMFVDKPQ------LQPGEQEIAIMIDAATGVAGKITSGAKVNIIATFKGAKETD 148

Query: 166 TVT--VVLSNIRVIAIDHNI----DSDER-VLVGSTATLELTPMQAKALVAAQSVAK-LS 217
                ++++N RV+ +        D D++        T  L     + +  A+S A+ + 
Sbjct: 149 PSRSVIIVANARVLGVGKLTALDKDGDKKGPAEAVPITFALNTKDTQRVAYAESFAEHVR 208

Query: 218 LVLRSIA-DLNPSSSEDSDVWDVQ 240
           L L +   D  PS ++ +   D  
Sbjct: 209 LALVAPGTDSAPSPTDRTYTLDGD 232


>gi|331694666|ref|YP_004330905.1| SAF domain-containing protein [Pseudonocardia dioxanivorans CB1190]
 gi|326949355|gb|AEA23052.1| SAF domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score = 70.3 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 81/206 (39%), Gaps = 14/206 (6%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            ++A R+++   V T  V+   PA    + V+++  DL  G  +    +   ++P+  V 
Sbjct: 27  AVLARRVIAGALVVTAVVLALRPAADPGVPVVVAVHDLPAGTTLAAADVAVRSWPQGLVP 86

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
            G         A  ++ G ++  P   G+P+   +LV      +++       A ++ + 
Sbjct: 87  GGV------AAAPSDVTGRVLAGPARAGEPLTDLRLVGPALAVVATGRAD---AVSVPVR 137

Query: 138 -ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT 196
                V G++ P   VDVV   + ++    +    +   V+              G    
Sbjct: 138 LADPGVAGLLTPGSLVDVVTPGATADEAVVLASAAAVTAVLPA--ENGPVAGAAKGRLVL 195

Query: 197 LELTPMQAKALVAAQSVAKLSLVLRS 222
           + L P QA  L AA    ++++ LR 
Sbjct: 196 VALPPAQATRLAAASLTQQVAITLRP 221


>gi|21223378|ref|NP_629157.1| hypothetical protein SCO5005 [Streptomyces coelicolor A3(2)]
 gi|8218167|emb|CAB92598.1| hypothetical proten SCK15.07 [Streptomyces coelicolor A3(2)]
          Length = 203

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 22/183 (12%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           K D+     +     E V  PE  + +  + D+ +      + G +    +  G  ++ +
Sbjct: 15  KSDIEPYTELGATQFEKVEMPERWLSENAVTDLSR------VRGKIAVTTLKAGSLLQTD 68

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169
            +VD         L  G++   + I  ++ V G I P   V+V                +
Sbjct: 69  MIVDTPA------LRPGQQEVAIMIDAATGVAGKITPGSTVNVYATFEGPREGDPDQSKI 122

Query: 170 VLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLR 221
           +++  +VI +             D         T  L+ + A+ +  A+S A ++ L L 
Sbjct: 123 IVTGAKVIDVGELTSLEPDEDSRDREPTDAVPITFALSTIDAQRITYAESFARRVRLALV 182

Query: 222 SIA 224
           +  
Sbjct: 183 APG 185


>gi|116255772|ref|YP_771605.1| hypothetical protein pRL110571 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260420|emb|CAK03524.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 312

 Score = 69.9 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++ + +  L+ G++           TE V  E  A     L     +  G  +TP++L  
Sbjct: 5   LIAAVIVGLITGVLLYFW-------TESVKNEQTAYAFMRLQPDRKVTRGQAITPDMLAE 57

Query: 69  -VAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            V  PE     G +  +  P A      L        I  G  +  +   D   G L+++
Sbjct: 58  PVMLPESF---GALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTM 114

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +  GKRA T+ ++ ++AVG  ++P  +VD++      
Sbjct: 115 IAPGKRALTLPVNAAAAVGHFVEPGSYVDILGTVDEP 151



 Score = 68.4 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 77/222 (34%), Gaps = 48/222 (21%)

Query: 51  SKGDLAVGMVVTPNIL----------------EWVAFPEENVFDGFIDDVHQPNAMQELD 94
           +  D+  G V+                       +  P        +    +P +  ++ 
Sbjct: 88  AASDIPAGSVLLFQYFDDTDGGRLTTMIAPGKRALTLPVNAA--AAVGHFVEPGSYVDIL 145

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA----TMDISISSAVGGMIK--- 147
           G  V  P+   +P+        G  G +  +P    A     T      S V  M+K   
Sbjct: 146 GT-VDEPV---EPVAPAAATQPGAPGQAPAVPGQPPAVAGQPTAPAQPQSPVEQMLKNYL 201

Query: 148 ---PN-DHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDHNIDSDERVLVGST 194
              P  D  DV   R  ++          +      L N++V+A+     ++  V   ++
Sbjct: 202 TQYPGADENDVNAYRKQAQDYKLGISSRTRVVTRTFLQNVKVLAVGAATTAEGAVTKANS 261

Query: 195 ----ATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSS 230
                T+E+TP +A+ L+ A  QS   L+LVLR+ AD     
Sbjct: 262 TYNNVTVEVTPSEAEMLIFAMGQSNGSLNLVLRNPADNTVED 303


>gi|260775654|ref|ZP_05884550.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608070|gb|EEX34239.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 263

 Score = 69.9 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 94/233 (40%), Gaps = 26/233 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ +    +     G+ A+  +SP      EV+   P +++ +   K        
Sbjct: 1   MKNKVIISLASFSILVGAYGLSAV--LSPKPTDATEVV---PTRYVKLWELKEPAKAKQE 55

Query: 61  VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           +T   L      E    + G++DDV    ++  + G+L R  + +G  +  +  +   + 
Sbjct: 56  LTREQLSVRRMKENEANELGYVDDV----SLSIVPGMLFRSNMAEGTLVTADDFIRPDDA 111

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------- 165
             +  +L +GK    + +   + VG  I+  D +D++    L+                 
Sbjct: 112 DYVDFILAEGKMPYRLTVVTENIVGTAIESGDLIDILAFTGLNGEDAYQEVALASKPVKG 171

Query: 166 --TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
             +VT + + I+V+ ++  +  D+     +T  LE+   QA  L  A+ +A L
Sbjct: 172 AISVTPIFAAIKVLRVETEVKKDDTQPQATTFILEMDRKQAVTLTLAKRIATL 224


>gi|303233382|ref|ZP_07320051.1| Flp pilus assembly protein CpaB [Atopobium vaginae PB189-T1-4]
 gi|302480511|gb|EFL43602.1| Flp pilus assembly protein CpaB [Atopobium vaginae PB189-T1-4]
          Length = 335

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 18/216 (8%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           +      E++      + + +++S   L VG V+ P+ +    +                
Sbjct: 30  ADAQKMREDLQARYGGETVELVVSTKALRVGDVIEPSDVVKRDWVSMLAPADAYTR---- 85

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
             M+++ G  V+VP+ +  PI                +P+G  A ++ ++    +G  I 
Sbjct: 86  --MEDVVGKTVKVPLSENAPITQTTFAAMDEQ---YSIPEGYVALSIPLTEKLGLGQHIA 140

Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207
           P+  V      +    +    ++ S++RV+ +    D         +  + + P     +
Sbjct: 141 PHTAV-----VAYEATQKASDLITSDMRVLYVQ---DEARGQFSSPSCVVAVKPQDVGRI 192

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
           + AQ+   L  V     D    +++ S+     +E 
Sbjct: 193 LTAQAKNSLKFV-VPAQDTTSDNADASNAATGTQEN 227


>gi|294814743|ref|ZP_06773386.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC
           27064]
 gi|326443124|ref|ZP_08217858.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC
           27064]
 gi|294327342|gb|EFG08985.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC
           27064]
          Length = 237

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 30/252 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ ++VS + AL A    + +++  + +     T              D+A    + 
Sbjct: 6   RRGVILLIVSVLCALGAFAGVISVINDVNSKVGPEATA--------YRLASDVAPYTALR 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
           P   E VA P   +    + D      +  + G +    + KG  ++ + +V R      
Sbjct: 58  PGQFEKVAVPRRWLPRTAVTD------LSTVRGKIAVTELRKGSLLQDDMIVKRPE---- 107

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180
             L  G++   + I  ++ V G I P D V++                ++++N +VI + 
Sbjct: 108 --LAPGEQEIAIMIDAATGVAGKITPGDLVNIFATFAGKAEGDPDQSRIIVTNAKVIDVG 165

Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSE 232
                     D   R+      T  L    A+ +  A+S A+ + L L +    +     
Sbjct: 166 RLTPLDPRRDDRRSRMREAVPITFALGTKDAQRVAHAESFAEHVRLALLAKGSPSTLRPG 225

Query: 233 DSDVWDVQEEGK 244
           DS     ++  +
Sbjct: 226 DSTYTLDEDRSR 237


>gi|320161465|ref|YP_004174689.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1]
 gi|319995318|dbj|BAJ64089.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1]
          Length = 376

 Score = 69.5 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 23  AMRLVSPHHVQTEEVITENPA----KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
            +R  +P+ + T    T  P     +  +++IS   ++ G+      +  + +P++++ +
Sbjct: 29  VVRFFAPNQLPTAPGETSAPPTPVEEMTSIVISVQPISRGLEFNETNVTTIPYPKKDLVE 88

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDI 136
           G          +QE+ G   +  I    PI +  LVD    N   +  +P G+ A T+ +
Sbjct: 89  GAF-----ITDIQEVLGKRAKFDIEARTPITMTMLVDPTTKNSPAAFQIPPGQVAITIPV 143

Query: 137 SISSAVGGMIKPNDHVDVVMV 157
           S  S+V   ++P DHV+V++ 
Sbjct: 144 SKLSSVAYGLEPGDHVNVIVS 164



 Score = 39.1 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 182 NIDSDERVLVGSTATLELTPMQAKA---LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
                       T TL +TP  A     L+ A    +L+LV+RS  D    ++E   +  
Sbjct: 276 QAQQPAEAPKPDTVTLIVTPQDAVTLNYLMLA--GGRLNLVMRSAGDSQRIATEPVTLQF 333

Query: 239 V--QEEGKEIQIIKAGVIVNKD 258
           +  Q        +  G+    D
Sbjct: 334 ILDQYNIPNPAKLPYGLEPRLD 355


>gi|154499687|ref|ZP_02037725.1| hypothetical protein BACCAP_03344 [Bacteroides capillosus ATCC
           29799]
 gi|150271285|gb|EDM98542.1| hypothetical protein BACCAP_03344 [Bacteroides capillosus ATCC
           29799]
          Length = 296

 Score = 69.2 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 37/251 (14%)

Query: 1   MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MKL  R +  ++S V A V   +A+             I         ++     +  G 
Sbjct: 7   MKLNNRFIFGILSLVLAAVIAFVAL-----------PTIARQTNGKTEIVRITQPVLKGE 55

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +T +  E V     N+            +M +++G+ V   + +GD I   K+      
Sbjct: 56  TITSDNAEVVEVGGYNLPSNVAH------SMDDVEGLYVTADLAEGDYILTSKVSTVPVS 109

Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              +L  +P GK A ++ + +++S +   ++P D + +      +E  P     L  ++V
Sbjct: 110 SDVALNDIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLETAEEVPE----LRFVKV 165

Query: 177 IAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIA 224
           +++                DE     +T T+  +P QA+ +   ++     + L  R+  
Sbjct: 166 LSVTDSDGINVDNTKETTEDEEPQQSATITVLASPEQARIITEMENDGVAHVALISRNND 225

Query: 225 DLNPSSSEDSD 235
            L      + D
Sbjct: 226 QLAEELLAEQD 236


>gi|257790639|ref|YP_003181245.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|257474536|gb|ACV54856.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
          Length = 432

 Score = 69.2 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 7/183 (3%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
                  ++  +I +N A  +NV+++  D+A G  +T   LE  A P+          V 
Sbjct: 236 FSGMRVAESSAIIAKNEANSVNVVVTNRDVAAGETITEADLETQAVPKAYCPTDAATKVS 295

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
                  L        I                  ++S +  G  A  + +  S ++  +
Sbjct: 296 DVAGHTSLTTQTAGTSISL-----SSLQASSSPAHITSAIEDGHVAIALSLDSSKSLSPL 350

Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAK 205
           ++  D V+V+ V S      +   V +N+++IA+D  +         S  TL++T  QA 
Sbjct: 351 LRVGDRVNVMAVVS-DGATSSAETVCANVKIIALDSALSGSPDAG-YSLVTLDVTEDQAA 408

Query: 206 ALV 208
           A+V
Sbjct: 409 AIV 411


>gi|241667103|ref|YP_002985187.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862560|gb|ACS60225.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 318

 Score = 69.2 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++ + +  L+ G++           TE V  E  A     L     +  G  +TP++L  
Sbjct: 5   LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAE 57

Query: 69  -VAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            V  PE     G +  +  P A      L        I  G  +  +   D   G L+++
Sbjct: 58  PVMLPESF---GALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTM 114

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +  GKRA T+ ++ ++AVG  ++P  +VD++      
Sbjct: 115 IAPGKRALTLPVNAAAAVGHFVEPGSYVDILGTVDEP 151



 Score = 65.3 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 18/172 (10%)

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV---RVPILKGDPIRLEKLVDRGNGG 120
           +IL  V  P E V          P     L G      + P   G P    +        
Sbjct: 143 DILGTVDEPVEPVAPAAATQPGAPGQPAALPGQPAVPGQAPPAAGQPQAPAQPQSPVEQM 202

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L + L +         +  + V    K         +   S  +      L N++V+A+ 
Sbjct: 203 LKNYLTQ------YPGADENDVNAYRKQAQD---YKLGISSRTRVVTRTFLQNVKVLAVG 253

Query: 181 HNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLSLVLRSIADL 226
               ++  V   ++     T+E+TP +A+ L+ A  QS   L+LVLR+ AD 
Sbjct: 254 AATTAEGAVTKANSTYNNVTVEVTPSEAEMLIFAMGQSNGSLNLVLRNPADN 305


>gi|323495636|ref|ZP_08100707.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
 gi|323319271|gb|EGA72211.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
          Length = 268

 Score = 68.8 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 108/276 (39%), Gaps = 27/276 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++GI V    A+V G+  +          + V    PAK I+V     D+    V
Sbjct: 1   MRTKLILGIAV---VAIVFGLYGLAGNLTESKAPQLVEKNKPAKLISVWQLNSDVPSAEV 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           V PN L+ V   EE         + +    +   G + R  +  G  +    +V   +  
Sbjct: 58  VRPNQLKIVKLSEE---QAAAIGISEDMLFEYPPGSIFRSDMKVGTTLFATDIVAPNSPE 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------------ERK 164
            L   L  G     + +S  + VGG+I+ + +VDV+ + S                  R 
Sbjct: 115 YLDLTLSDGFVPYPLKVSPDAVVGGVIRASSYVDVLALTSPEHLVSVEVNSSDSVARGRA 174

Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKLSLVLR 221
            +++ VL  ++V+ ++   +   +    +  T   LEL   Q   L  A+ ++ L  V +
Sbjct: 175 VSISPVLMGVKVLRVEQTFEEGAQEAGVAPDTHLILELDRKQVSILSVAKQISSLE-VHK 233

Query: 222 SIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           S+ D   +S   +D  DV    K +   +A  +  K
Sbjct: 234 SVGDYA-ASELHADAGDVLPGFKSVIEYRAETVTIK 268


>gi|239943893|ref|ZP_04695830.1| hypothetical protein SrosN15_23041 [Streptomyces roseosporus NRRL
           15998]
          Length = 235

 Score = 68.8 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 93/247 (37%), Gaps = 32/247 (12%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L+ + V   FA  AG++++       V  E    +           K ++A    +    
Sbjct: 11  LLLLSVLCAFAAFAGVLSVISDVNSKVGPEVTAYQL----------KTNVAPYTALNSGQ 60

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
            E +  P+  + +  + D      ++E++  +    + +G  ++ + +V +        L
Sbjct: 61  FEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE------L 108

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVI------ 177
             G++   + I  S+ V G I P   V++    +  ++       V++SN +V+      
Sbjct: 109 RAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLDVGELT 168

Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSD 235
           A+D +  D   R       T  L  +  + +  A+S A+ + L L +          D  
Sbjct: 169 ALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGIIRPGDRT 228

Query: 236 VWDVQEE 242
               +++
Sbjct: 229 YTLDKDK 235


>gi|239990347|ref|ZP_04711011.1| hypothetical protein SrosN1_23773 [Streptomyces roseosporus NRRL
           11379]
          Length = 235

 Score = 68.8 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 93/247 (37%), Gaps = 32/247 (12%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L+ + V   FA  AG++++       V  E    +           K ++A    +    
Sbjct: 11  LLLLSVLCAFAAFAGVLSVISDVNSKVGPEVTAYQL----------KTNVAPYTALNSGQ 60

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
            E +  P+  + +  + D      ++E++  +    + +G  ++ + +V +        L
Sbjct: 61  FEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE------L 108

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVI------ 177
             G++   + I  S+ V G I P   V++    +  ++       V++SN +V+      
Sbjct: 109 RAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLDVGELT 168

Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSD 235
           A+D +  D   R       T  L  +  + +  A+S A+ + L L +          D  
Sbjct: 169 ALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGTIRPGDRT 228

Query: 236 VWDVQEE 242
               +++
Sbjct: 229 YTLDKDK 235


>gi|182436324|ref|YP_001824043.1| hypothetical protein SGR_2531 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776954|ref|ZP_08236219.1| Flp pilus assembly protein CpaB [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464840|dbj|BAG19360.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326657287|gb|EGE42133.1| Flp pilus assembly protein CpaB [Streptomyces cf. griseus
           XylebKG-1]
          Length = 235

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 93/247 (37%), Gaps = 32/247 (12%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L+ + V   FA  AG++++       V  E    +           K ++A    +    
Sbjct: 11  LLLLSVLCAFAAFAGVLSVISDVNSKVGPEVTAYQL----------KSNVAPYTALNSGQ 60

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
            E +  P+  + +  + D      ++E++  +    + +G  ++ + +V +        L
Sbjct: 61  FEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE------L 108

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVI------ 177
             G++   + I  S+ V G I P   V++    +  ++       V++SN +V+      
Sbjct: 109 RAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLDVGELT 168

Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSD 235
           A+D +  D   R       T  L  +  + +  A+S A+ + L L +          D  
Sbjct: 169 ALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGTIRPGDRT 228

Query: 236 VWDVQEE 242
               +++
Sbjct: 229 YTLDKDK 235


>gi|319937910|ref|ZP_08012310.1| hypothetical protein HMPREF9488_03146 [Coprobacillus sp. 29_1]
 gi|319806816|gb|EFW03455.1| hypothetical protein HMPREF9488_03146 [Coprobacillus sp. 29_1]
          Length = 223

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 75/178 (42%), Gaps = 17/178 (9%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               +VL+    +  G  +T ++L      + ++ D ++    +     E+ G    + +
Sbjct: 31  GNMTDVLVVNQTVRGGTQITESMLSVKKVDKSSLPDNYLKASLR----DEVVGKYFDLGL 86

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +  + +   G    +SL+  G    +M   + +   G++   DH+++V+  S   
Sbjct: 87  TSGGVLTKDNISVSGK---ASLIQSGYILYSMK-DLETYPNGLVT-GDHLNIVVASSSDG 141

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            K   T+   N+ V     ++  +E V+ G    + +TP  A+ +  AQ+   +S+ L
Sbjct: 142 NKYVKTI--ENVPV----ASVHMEENVITG--IEVYVTPEAAQLIAFAQANGDVSVGL 191


>gi|302558701|ref|ZP_07311043.1| flp pilus assembly protein CpaB [Streptomyces griseoflavus Tu4000]
 gi|302476319|gb|EFL39412.1| flp pilus assembly protein CpaB [Streptomyces griseoflavus Tu4000]
          Length = 235

 Score = 68.4 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 23/208 (11%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K D+A    ++    E +  PE  +    + D+        +   +
Sbjct: 33  VESKVGPEVTAYRLKTDVAPYTPLSTGQFEKIKMPERWLSKNAVTDLAG------IRDKI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + +G  ++ + +VDR        L  G++   + I  ++ V G I P   V+V   
Sbjct: 87  AVTGLREGSLLQSDMIVDRPA------LRPGQQEVAIMIDAATGVAGKITPGSTVNVYAT 140

Query: 158 --RSLSERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208
                        V+++N RV+ +           D           T  L+ + A+ + 
Sbjct: 141 FEGEREGDPDQSRVIVTNARVLDVGRLTALRPDENDRGREPTDAVPITFALSAIDAQRIT 200

Query: 209 AAQSVA-KLSLVLRSIA-DLNPSSSEDS 234
            A+S A ++ L L +   D     S+ +
Sbjct: 201 YAESFAQRVRLALVAPGTDTTVPDSQRT 228


>gi|269125159|ref|YP_003298529.1| SAF domain-containing protein [Thermomonospora curvata DSM 43183]
 gi|268310117|gb|ACY96491.1| SAF domain protein [Thermomonospora curvata DSM 43183]
          Length = 378

 Score = 68.4 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 12/129 (9%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
             +       + VL +  DL  G  +    +  V  P   V DG + D         + G
Sbjct: 40  AAVHPPAPAGVRVLTAARDLPGGTELREQDIRPVMMPSAAVPDGALRD--------RVVG 91

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
            ++  P+ +G+ +   +LV  G   L      G  AA + ++ ++A+  +++P D +DV 
Sbjct: 92  RVLAGPMRRGEIVTDTRLVGDG---LLKGYGPGTVAAPIRVADTAALR-LLRPGDRIDVF 147

Query: 156 MVRSLSERK 164
                    
Sbjct: 148 ATAFSGGSG 156


>gi|300781680|ref|ZP_07091534.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
           33030]
 gi|300533387|gb|EFK54448.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
           33030]
          Length = 212

 Score = 68.4 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 22/188 (11%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +T   A    VL    +++ G  ++ + +E    PE  V DG  D V       +++G +
Sbjct: 33  VTGRAANDPAVLAFTREVSPGEPLSADDVELQRMPEAIVPDGAFDQVS------DVEGQI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA----ATMDISISSAVGGMIKPNDHVD 153
           V      G+ +   +L+      L S L  G RA      + +     +  M+   D V 
Sbjct: 87  VASTASAGEVVTPTRLLGPD---LVSALVPGDRADYTMVPVKL-AEPDIIPMLHHGDRVS 142

Query: 154 VVMVRSLSERKPTVTVVLSN-IRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
           V +  +  E++     + +N + V+A               +  L L   +A+A+ AA  
Sbjct: 143 V-VTINHGEQEGAARTIATNGVVVLA------GGAEDSPAGSVLLLLLHDEAEAVAAASL 195

Query: 213 VAKLSLVL 220
            + L++VL
Sbjct: 196 SSPLAVVL 203


>gi|254522254|ref|ZP_05134309.1| Flp pilus assembly protein CpaB [Stenotrophomonas sp. SKA14]
 gi|219719845|gb|EED38370.1| Flp pilus assembly protein CpaB [Stenotrophomonas sp. SKA14]
          Length = 343

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 12/156 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           +KLTR+  + + G+  L+A I  M    P        +     + I V+ +   L  G  
Sbjct: 2   LKLTRIAAVALIGLAVLLAVIALMIGRKPDAPVHVAPVASADPQAITVVEAVARLPAGEP 61

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T N L            G         +M  + G +    I +G  I    L      G
Sbjct: 62  ITANGLRLAQ--RTTPVAGAAT------SMSTVVGKVPVQDIAEGSAISTSALAQ----G 109

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
            S  L  G+RA  + +      G  I P D VDV +
Sbjct: 110 FSLQLRPGERALAVPVDELVGAGNRILPGDFVDVFL 145



 Score = 36.8 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-------PSSSEDSDVW 237
           SDE      +A L +    A  L+      KL L LR+ AD         P +    D  
Sbjct: 212 SDETRQPARSAVLAVPVADANRLLLGAQQGKLFLALRNPADTGLPDLALFPQAPGVIDPL 271

Query: 238 DVQEEGKEIQIIK 250
              +  +++ + +
Sbjct: 272 RGLDAEQQVALQR 284


>gi|90412177|ref|ZP_01220183.1| hypothetical protein P3TCK_27809 [Photobacterium profundum 3TCK]
 gi|90326901|gb|EAS43286.1| hypothetical protein P3TCK_27809 [Photobacterium profundum 3TCK]
          Length = 284

 Score = 68.0 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 83/245 (33%), Gaps = 37/245 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  I    V   + G +A  L+S     +     E   K+I V  +   LA G  
Sbjct: 1   MNSKIIFVIAFLAVLTGLYG-MADTLLSTTDTASTSATEEKEIKYITVWRATSPLARGQA 59

Query: 61  VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           ++P+ L      EE     G   DV        L      + + +G  +  E     G  
Sbjct: 60  LSPSSLTREQLTEEAALSLGINSDVTLKFEPTTLMN----MDVKQGALVFPELQTSPGEA 115

Query: 120 GLSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------- 168
           G  +L+ +G      + I+  + +   I+P D++D++ V S        T          
Sbjct: 116 GYLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENFEGVR 175

Query: 169 --VVLSNIRVIAIDH------------NIDSDERVLVG------STATLELTPMQAKALV 208
             +++  IRV+++                 S  R  V       ST  +E+ P     L 
Sbjct: 176 ASLLMQRIRVMSVGQSNTLAEKSGQRSTTTSTIRPKVNISNENESTVVIEVNPDDLAKLS 235

Query: 209 AAQSV 213
            AQ  
Sbjct: 236 LAQRT 240


>gi|116671477|ref|YP_832410.1| hypothetical protein Arth_2931 [Arthrobacter sp. FB24]
 gi|116611586|gb|ABK04310.1| hypothetical protein Arth_2931 [Arthrobacter sp. FB24]
          Length = 259

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +RL+  VV+ + A+V  ++ +        +  + +       + VL+    +  G  
Sbjct: 1   MK-SRLLAGVVAVLLAIVGAVLVVTYAQGADQRAVKDLDP-----VGVLVVTKAIPAGAT 54

Query: 61  VT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
           V      +     P   V    +D       + E  G +    ++ G+ +  EKLV   +
Sbjct: 55  VDTVKASVALEQVPGTAVAKSALDT------LDESAGKVAAANLVPGEQLLAEKLVAPED 108

Query: 119 --GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVL 171
                S  +P G +  +  +     VGG ++P DHV + +            K T  + +
Sbjct: 109 LQTSGSMKVPAGLQEVSFQLEPQRVVGGRLQPGDHVGIFITMRSGGIEPKPEKETTQLSI 168

Query: 172 SNIRVIAI 179
             + V A+
Sbjct: 169 HKVLVTAV 176


>gi|72160773|ref|YP_288430.1| hypothetical protein Tfu_0369 [Thermobifida fusca YX]
 gi|71914505|gb|AAZ54407.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 214

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 19/189 (10%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                  + VL++  DL+  + +T       + P   V DG +           + G  +
Sbjct: 40  RPPAPPAVEVLVAAHDLSGLVPLTDADTVARSIPAAVVPDGALAPGDP------VAGRAL 93

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
           R P+  G+ +   +L D    G  + L     AA + ++       +++P   +DV+   
Sbjct: 94  RSPVRAGEILTEVRLADPPAAGYGADL----VAAPVRLAD-PGAAALLRPGSRIDVLAAA 148

Query: 159 SLS-----ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
                       T   ++ +  VI +    + D    +G+   L +T  +A+AL    + 
Sbjct: 149 GDPPVVDYPGPDTARRIVRDRPVITV--VAEDDAAHSLGTLIVLAVTDEEAQALA-GHAA 205

Query: 214 AKLSLVLRS 222
            +LS+ +R 
Sbjct: 206 DRLSIAIRG 214


>gi|218680528|ref|ZP_03528425.1| hypothetical protein RetlC8_17240 [Rhizobium etli CIAT 894]
          Length = 166

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKAL--VAAQSVA 214
           S  +      L N++V+A+     ++  V   ++     T+E+TP +A+ L     QS  
Sbjct: 82  SRTRVVTRTFLQNVKVLAVGAATTAEGAVTKANSTYNNVTVEVTPAEAEMLIFALGQSNG 141

Query: 215 KLSLVLRSIADLNPSS 230
            L+LVLR+ AD     
Sbjct: 142 SLNLVLRNPADNTVED 157


>gi|254506045|ref|ZP_05118189.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
 gi|219550863|gb|EED27844.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
          Length = 267

 Score = 66.5 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 94/234 (40%), Gaps = 24/234 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + V    A++ G+  +         +  + T  P KF +V   +  ++   V
Sbjct: 1   MRTKLILAVAV---LAIIFGLYGLAGNLTRPTDSSSLQTAQPLKFYSVWQVRSQVSATDV 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           V P  L+ +   E+   D  +  + +    +   G + R  + +G  +    +V   +  
Sbjct: 58  VRPEHLQVLKIQED---DAALQGIAEDMLFEYPLGSIYRSDMAEGSLLYPTDIVAPNSPE 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RKP 165
            L   L  G     + +S  + VGG+I+ + ++D++ + S +               +  
Sbjct: 115 YLDLTLADGYVPYPLKVSPEAVVGGVIRASSYIDILALTSPTNVATIEVGSSATARGKAI 174

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKL 216
           +++ VL  ++V+ +D +   +      +  T   LEL   Q   L  A+ +A L
Sbjct: 175 SISPVLMGVKVLRVDQSDAKEATGEDVALETHLILELDRKQVSILSVAKQIATL 228


>gi|117927367|ref|YP_871918.1| hypothetical protein Acel_0157 [Acidothermus cellulolyticus 11B]
 gi|117647830|gb|ABK51932.1| hypothetical protein Acel_0157 [Acidothermus cellulolyticus 11B]
          Length = 238

 Score = 66.5 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 20/187 (10%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
           + +T  P   ++V++++ DL  G  +    +   AFP      G +  +       E+ G
Sbjct: 55  QSLTPRPPATVDVVVAQRDLPAGATIRDADVRLAAFPTNLQPAGTLHRLV------EVTG 108

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
             +  P+ +G+P+   +     +         G  A  + ++   AV  +  P   VDV+
Sbjct: 109 RRLISPVRRGEPLTDVRFGGGAHP------APGLVAVPIHVAD-GAVTKLFSPGMSVDVL 161

Query: 156 MVRSLSERKPTVTVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
                +       VV +++ V+A+     +   D   L+     +  +  QA+ L  AQ+
Sbjct: 162 AADPDAPLGTPAVVVATDVDVLAVPSNGSDPAGDGSALLF----VAASAWQARLLAQAQA 217

Query: 213 VAKLSLV 219
            + L L 
Sbjct: 218 RSPLVLA 224


>gi|254393097|ref|ZP_05008257.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197706744|gb|EDY52556.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 205

 Score = 66.5 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 22/203 (10%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
             D+A    + P   E VA P   +    + D      +  + G +    + KG  ++ +
Sbjct: 15  ASDVAPYTALRPGQFEKVAVPRRWLPRTAVTD------LSTVRGKIAVTELRKGSLLQDD 68

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169
            +V R        L  G++   + I  ++ V G I P D V++                +
Sbjct: 69  MIVKRPE------LAPGEQEIAIMIDAATGVAGKITPGDLVNIFATFAGKAEGDPDQSRI 122

Query: 170 VLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLR 221
           +++N +VI +           D   R+      T  L    A+ +  A+S A+ + L L 
Sbjct: 123 IVTNAKVIDVGRLTPLDPRRDDRRSRMREAVPITFALGTKDAQRVAHAESFAEHVRLALL 182

Query: 222 SIADLNPSSSEDSDVWDVQEEGK 244
           +    +     DS     ++  +
Sbjct: 183 AKGSPSTLRPGDSTYTLDEDRSR 205


>gi|134097376|ref|YP_001103037.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009066|ref|ZP_06567039.1| hypothetical protein SeryN2_31485 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909999|emb|CAM00111.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 183

 Score = 66.5 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 14/197 (7%)

Query: 25  RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84
            L +   V   +      +  + VL++  DLA G V+ P+ +     P E    G + +V
Sbjct: 1   MLATLAAVMALQPRPGPASDGVPVLVAARDLAPGHVLEPDDVARRTMPAELAPGGVLSEV 60

Query: 85  HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG 144
                  E  G ++      G+P+   +L       L++       A  + ++    V  
Sbjct: 61  ------DEATGRVLGTASRSGEPLTDVRLAGPAQTALTTG-DPRHAAVPIRLAD-PDVAD 112

Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQA 204
           ++ P   VD+V   +   R    +V+     VIA+    D  ++   G    + L    A
Sbjct: 113 LLHPGRRVDIVTTAT---RSGNSSVLAEQAPVIAVRPTGDRHDQ---GRLIVVGLPEGLA 166

Query: 205 KALVAAQSVAKLSLVLR 221
            A+ AA     +++ LR
Sbjct: 167 PAVAAASLTQSVTVTLR 183


>gi|317506822|ref|ZP_07964596.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974]
 gi|316254896|gb|EFV14192.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974]
          Length = 227

 Score = 66.5 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 17/184 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  DL  G  + P  L     P + V +G         A ++L G  V  P+  G+
Sbjct: 52  PVVVAAHDLKPGAALLPADLGIRRLPPDQVPEGAAT------AAEQLVGRTVAGPVRTGE 105

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKP 165
            +   +++      L++ +P+  R   + +    A+  M++P D VDV+ V +  S    
Sbjct: 106 TLTDARVIAPRLAQLATSVPEA-RIVPVRLPDQ-ALADMLRPGDVVDVITVPQRQSGLPE 163

Query: 166 TVTVVLSNIR---VIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
             T   + +R   V+A    +         R   G  A + +    A+ + AA  V  ++
Sbjct: 164 DATTKQTGLRPPEVLARGAVVLLVSEPERSRSPEGRVALIAMADKPAQTVAAATLVQPVT 223

Query: 218 LVLR 221
           ++LR
Sbjct: 224 VILR 227


>gi|284991842|ref|YP_003410396.1| SAF domain-containing protein [Geodermatophilus obscurus DSM 43160]
 gi|284065087|gb|ADB76025.1| SAF domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 244

 Score = 66.5 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 18/203 (8%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVT--PNILEWVAFPEENVFDGFIDDVHQP 87
            +V+  +       + ++VL+    +A G        ++     P +    G + D    
Sbjct: 24  AYVRGADARALAGVQTVDVLVVDRPVAEGTPGEELAELVRTERLPAKAAVPGAVTD---- 79

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL--PKGKRAATMDISISSAVGGM 145
             + EL G +  V +  G+ +   +    G+ G+   +  P+G    ++ +    AVGG 
Sbjct: 80  --LDELAGRVATVDLQPGEQLLAARFAVPGDLGVPGTVPAPEGTAEVSLLLEPQRAVGGR 137

Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIR--VIAIDHNIDSDERVLVGST------ATL 197
           +   D V V +      R     V+++ ++   +A+     +D     G+        TL
Sbjct: 138 LAAGDTVGVHVSLDGRTRAVLSRVLVTQVQGAPVAVADGEGTDTASSGGAAPSASLMVTL 197

Query: 198 ELTPMQAKALVAAQSVAKLSLVL 220
            L P  A+A+V       + L L
Sbjct: 198 GLRPEAAEAVVFGMEHGTVWLSL 220


>gi|262275470|ref|ZP_06053280.1| flp pilus assembly protein RcpC/CpaB [Grimontia hollisae CIP
           101886]
 gi|262220715|gb|EEY72030.1| flp pilus assembly protein RcpC/CpaB [Grimontia hollisae CIP
           101886]
          Length = 263

 Score = 66.1 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 96/268 (35%), Gaps = 26/268 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       I    +   V G+      S          +      I V   K  +  G +
Sbjct: 1   MSQRVFFLIAFLSIAGGVLGL------SGFFQSKNTTASNISNISIKVAQLKTPVTRGDI 54

Query: 61  VTPNILEWVAFPE-ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           VT + + +    E E +  G + DV     +  + G++ +  +   D + +   +   + 
Sbjct: 55  VTGDNIRYFRLRETEALEYGIVSDVV----ISPVSGMVAKKDLTTSDYLSMSDFILPSDP 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RK 164
             L +++       ++ I     +G  I   D VDV+++ S  +              R 
Sbjct: 111 AYLDTVIDDHMTPYSLTIERKDFIGSGISVGDRVDVIILTSDEQNIGDTSRSNHIESFRS 170

Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            +V+ +L N+RV+AID   + +         T+EL   Q   +V A+ +  + ++  S A
Sbjct: 171 LSVSPLLRNVRVLAIDDGKEKENEKEEILPLTIELNRDQVAKMVIARRIGIIEVIKSSNA 230

Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKAG 252
                    +D  DV    K +  I+  
Sbjct: 231 SQQRLLGMTADTHDVLPNFKSVTEIRGS 258


>gi|59713402|ref|YP_206177.1| tungstate-binding protein precursor [Vibrio fischeri ES114]
 gi|59481650|gb|AAW87289.1| tungstate-binding protein precursor [Vibrio fischeri ES114]
          Length = 261

 Score = 66.1 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 90/230 (39%), Gaps = 22/230 (9%)

Query: 1   MKLTRLMGIV-VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK   ++ +  ++ +F L     ++ + +P +     +I       I V   K ++    
Sbjct: 1   MKAKIIVVLAMITILFGLYGLAGSLSMFAPQN-----IIKPKEENKIKVWQLKENVNARD 55

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGN 118
            +   ++  V  PE         +    N  +   G + R  + KGD I +E  +    +
Sbjct: 56  EINRRLVSLVLLPESEANKLSFSEDVPINWNR---GTIYRHDLKKGDYISMEDFITPEED 112

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTV 169
             +  ++   +    + I     +GG+I     VDV+ +    E +          ++T 
Sbjct: 113 NYIEYVIAPNRVPFPLPIDSPDIIGGVIGNGSFVDVLALTKSDENRNSNRATKKTLSITP 172

Query: 170 VLSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKL 216
           + ++I+V+ +   +  + R+          LELT  QA  L+ A+  AK+
Sbjct: 173 IFTSIKVLQVKRTVIPETRIEPAKEGIVLILELTRSQAVELIVAKEAAKI 222


>gi|332970970|gb|EGK09944.1| hypothetical protein HMPREF9374_2747 [Desmospora sp. 8437]
          Length = 245

 Score = 65.7 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 34/244 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++  V+S + A VAG +         ++    +         V ++K ++A   ++
Sbjct: 5   KRRAIIFAVLSVLLATVAGFL--------FLEETAALQAGLGAPTTVYVAKQEIASREIL 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
            P   E    P + V    + D        E+DG +  VP+ KGD +    L        
Sbjct: 57  RPEFFEAKEIPSKYVTSSMVTDPA------EIDGQVSVVPLGKGDQLTKSMLKP------ 104

Query: 122 SSLLPKGK-RAATMDISISSAVGGMIKPNDHVDVVMVRSL----SERKPTVTVVLSNIRV 176
           +  L  G+ R   +  S            D VD+++           KP  TV + +  +
Sbjct: 105 ARQLNDGESRMVLLRTSDKVLFDDSFTAQDRVDIIVSYEKDPKTGAEKPKTTVFMKDKLI 164

Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           + +     S  +  +G    +ELT  +A+ LV A++ A    VL++  + +     + D 
Sbjct: 165 VGV-----SKNQKSIG----IELTLKEAEKLVYAENFAHSIRVLKAPQEQDMKKDNEKDA 215

Query: 237 WDVQ 240
            D  
Sbjct: 216 QDDP 219


>gi|325964114|ref|YP_004242020.1| Flp pilus assembly protein CpaB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470201|gb|ADX73886.1| Flp pilus assembly protein CpaB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 241

 Score = 65.3 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 78/206 (37%), Gaps = 26/206 (12%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQPN 88
           +VQ      +   + +NVL+ K  +  G   +     L   + P+  V  G +       
Sbjct: 25  YVQGASARAQAGLEPVNVLVVKEKVPAGTKTSDLSAKLRVDSIPKSAVPAGALT------ 78

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISSAVGGMIK 147
           ++ + +G +  V +  G+ +   +LVD  +    ++ +P+G    T+ +S    +GG ++
Sbjct: 79  SLDQQEGKVTAVALEPGEQLMATRLVDPRDLAPGTVPVPEGLEEVTLLLSPERILGGRLE 138

Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST------------- 194
             D V +       + +    ++  ++ + A+     SD +   GS              
Sbjct: 139 AGDTVTIYSSFDKEDGQ--TGLLFHDVLITAV-QKAPSDSKNNSGSGSSEPAVEMPNGSA 195

Query: 195 -ATLELTPMQAKALVAAQSVAKLSLV 219
             T   +   A  L+ +    KL L 
Sbjct: 196 FITFARSDSDASKLIYSAEFGKLWLA 221


>gi|325964122|ref|YP_004242028.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470209|gb|ADX73894.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 247

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 35/232 (15%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT--PNILEWV 69
           +   A+V  ++ +        +          + ++VL+ K  +  G  V      L   
Sbjct: 6   AVALAIVGALLIIFYAQGADQRAI-----ATTQPVDVLVVKTAIPAGTPVNDMAASLALE 60

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL--SSLLPK 127
             P   V D  +      +++    G +  V ++ G+ +  E+LV   +     +  +P 
Sbjct: 61  RMPAAGVSDTAL------SSLDNKAGTVSAVDLVAGEQLLAERLVAPADVKAQGAVEVPA 114

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-----ERKPTVTVVLSNIRVIAIDH- 181
           G +  + ++     VGG I   DHV + +              T  + L  + V A+   
Sbjct: 115 GLQEVSFEVEPKRVVGGRINVGDHVGIALNFENGAYKAKADDATTQLTLRKVIVTAVQRA 174

Query: 182 -NIDSDERVLVGST-------------ATLELTPMQAKALVAAQSVAKLSLV 219
               S E+   G                T+ +T + A  ++       L L 
Sbjct: 175 PQPASTEKPAEGEANSQDTTLPQGSLMITVAVTDVDAAKIIFTSINGTLWLT 226


>gi|148655421|ref|YP_001275626.1| SAF domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567531|gb|ABQ89676.1| SAF domain [Roseiflexus sp. RS-1]
          Length = 338

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 79/282 (28%), Gaps = 77/282 (27%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVV--TPNILEWVAFPE---ENVFDGFIDD 83
           P  V         P     V+ ++ D+    V+  T   L     PE       D +   
Sbjct: 30  PTPVPEALPQEPTPVPLRKVVAARVDIPANTVLTDTETFLTLRDIPEPEYNAAPDQYFT- 88

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP-------KGKRAATMDI 136
                ++ EL   +    +   + IR   L      GLS  +P          +   +++
Sbjct: 89  -----SVNELTTKVTLRALNATEIIRARDLT---EAGLSFQVPLPDSPDTPRDKVFPLEV 140

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSER-------------------------KPTVTVVL 171
              + V   I+P D VD+VM   +                                  ++
Sbjct: 141 GNLTGVADQIRPGDAVDLVMTYEIRRLIIRPSLTLDPETGQLVVTPLEETLVDRVTKTMV 200

Query: 172 SNIRVI-----AIDHNIDSDERVLVGSTAT----------------------LELTPMQA 204
            N+RV+     AI     +        TA                       L +T  +A
Sbjct: 201 QNVRVLRVLKPAIPQEAGTPTPAGQQGTAPPPPPSSTQTPDTFVPGAQWILLLAMTDQEA 260

Query: 205 KAL--VAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
           + +     Q     +++LVLR   D     +    +  +   
Sbjct: 261 EIVKFTLDQQDPKPQITLVLRGRDDSAIEDTTGITLRLLTSR 302


>gi|325676315|ref|ZP_08155994.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC 33707]
 gi|325552876|gb|EGD22559.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC 33707]
          Length = 234

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             VL++  DL  G V+TP+ +  VA P+ ++ +G +  V       +  G  V  P+  G
Sbjct: 65  APVLVAAHDLTPGTVLTPDDVRVVARPDPDLPEGSVRVVA------DASGRTVASPVRAG 118

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           + +   +L+       ++      R   + ++    +  +I+  D VDV+ V   S    
Sbjct: 119 EMLTDVRLLGP-RLTEAAAGAPDARMVPVRLTD-PGLSELIRAGDRVDVLTVDQTSGPTE 176

Query: 166 TVTVVLSNIRVIAIDHNI 183
           T     +   V+A D  +
Sbjct: 177 TRRPAAT---VLATDATV 191


>gi|197337610|ref|YP_002157811.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
 gi|197314862|gb|ACH64311.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
          Length = 261

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 89/230 (38%), Gaps = 22/230 (9%)

Query: 1   MKLTRLMGIV-VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK   ++ +  ++ +F L     ++ + +P +     +I       I V   K D+    
Sbjct: 1   MKAKIIVVLAMITILFGLYGLAGSLSMFAPQN-----IIKPKEENKIKVWQLKEDVNARD 55

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGN 118
            +   ++  V  PE         +    N  +   G + R  + KG  I +E  +    +
Sbjct: 56  EINRRLVSLVLLPESEANKLSFSEDVPINWNR---GTIYRHDLKKGAYISMEDFITPEED 112

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTV 169
             +  ++   +    + I     +GG+I     VDV+ +    E +          ++T 
Sbjct: 113 NYIEYVIAPNRVPFPLPIDSPDIIGGVIGNGSFVDVLALTKSDETRNSNRATKKTLSITP 172

Query: 170 VLSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKL 216
           + ++++V+ +   +  + R+          LELT  QA  L+ A+  AK+
Sbjct: 173 IFTSVKVLQVKRTVIPETRIEPAKEGIVLILELTRSQAVELIVAKEAAKI 222


>gi|291447356|ref|ZP_06586746.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350303|gb|EFE77207.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 207

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 78/201 (38%), Gaps = 22/201 (10%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           K ++A    +     E +  P+  + +  + D      ++E++  +    + +G  ++ +
Sbjct: 19  KTNVAPYTALNSGQFEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSD 72

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTV 169
            +V +        L  G++   + I  S+ V G I P   V++    +  ++       V
Sbjct: 73  MMVRKPE------LRAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKV 126

Query: 170 VLSNIRVI------AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLR 221
           ++SN +V+      A+D +  D   R       T  L  +  + +  A+S A+ + L L 
Sbjct: 127 IVSNAKVLDVGELTALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALV 186

Query: 222 SIADLNPSSSEDSDVWDVQEE 242
           +          D      +++
Sbjct: 187 APGSDGIIRPGDRTYTLDKDK 207


>gi|297563018|ref|YP_003681992.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296847466|gb|ADH69486.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 218

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 16/188 (8%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
              P     VL++  DL     +T   L     P  +V            A     G+ +
Sbjct: 43  RPAPVPVTRVLVASRDLGAADPLTEGDLTARDLPAGSVP------GGALAADTAAAGLRL 96

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
             P+ +G+ I   +L D      +     G  A  + ++   AV G++ P   VDV+   
Sbjct: 97  NAPVRRGEVITDARLADP----PARAYGPGLVAVPVRVADPGAV-GLLSPGSRVDVLAAG 151

Query: 159 SLSERKPT----VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
              +  P        V+S+  V+A+     S           +  TP++A++L    + +
Sbjct: 152 GSDDLAPARAGPAVEVVSDRPVLALPEEESSGGGEGGALIV-VAATPVEARSLAGHAAAS 210

Query: 215 KLSLVLRS 222
           +LS+ +R 
Sbjct: 211 RLSITIRG 218


>gi|326204373|ref|ZP_08194231.1| SAF domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985405|gb|EGD46243.1| SAF domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 241

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 28/221 (12%)

Query: 4   TRLMG---IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
            RL+    ++  G+F +++      + + + + TE        K + VL +   +    +
Sbjct: 3   KRLVIKTVLICIGIFIILSATAWYFIFNTYKLDTE--------KNVTVLAASTKIDENTI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  +++           +  + D+       E  G      I +GD I    L+ +    
Sbjct: 55  INESMIRKKTVKASAATENMVKDIS------ECTGSKSTGLIKEGDYIYRYNLISK---- 104

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV-IAI 179
            S L     RA  +  +I      ++K    VD+++    +  +P   +VLS +RV +  
Sbjct: 105 -SKLYADDIRAIVLPATIEDRAANLVKKGSLVDIIVQPKEASGRP--QIVLSKVRVDMVF 161

Query: 180 DHNIDSDERVLVGST---ATLELTPMQAKALVAAQSVAKLS 217
           D +  + E   VGS      L L   Q   + +A+    LS
Sbjct: 162 DDSGINTEGSEVGSKKGFIKLLLNSNQRAKIYSARLAGTLS 202


>gi|312138618|ref|YP_004005954.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S]
 gi|311887957|emb|CBH47269.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S]
          Length = 206

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             VL++  DL  G V+TP+ +  VA P+ ++ +G +  V       +  G  V  P+  G
Sbjct: 37  APVLVAAHDLTPGTVLTPDDVRVVARPDPDLPEGSVRVVA------DASGRTVASPVRAG 90

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           + +   +L+       ++      R   + ++    +  +I+  D VDV+ V   S    
Sbjct: 91  EMLTDVRLLGP-RLTEAAAGAPDARMVPVRLTD-PGLSELIRAGDRVDVLTVDQTSGPTE 148

Query: 166 TVTVVLSNIRVIAIDHNI 183
           T     +   V+A D  +
Sbjct: 149 TRRPAAT---VLATDATV 163


>gi|296393686|ref|YP_003658570.1| SAF domain-containing protein [Segniliparus rotundus DSM 44985]
 gi|296180833|gb|ADG97739.1| SAF domain protein [Segniliparus rotundus DSM 44985]
          Length = 227

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           LVA       +         +           +++  DL  G+ + P  L   +    +V
Sbjct: 22  LVAARRVAAGLLLLLAGGLAIRAHARPGQAAAVVAAHDLRPGVALGPADLAVRSLSPGDV 81

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136
             G + D  Q      L G  V  P+  G+ +   +++     GL++ +P   RA ++ +
Sbjct: 82  PAGAVADPRQ------LLGRTVAGPVRSGEALTDVRIITPRLAGLATAIPDA-RAVSVRL 134

Query: 137 SISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIR---VIA 178
              + +  M++P D VDVV V +             + IR   V+A
Sbjct: 135 PDQT-LADMLRPGDVVDVVTVPQHQPGATEDAATKQTGIRPPEVLA 179


>gi|225389628|ref|ZP_03759352.1| hypothetical protein CLOSTASPAR_03376 [Clostridium asparagiforme
           DSM 15981]
 gi|225044308|gb|EEG54554.1| hypothetical protein CLOSTASPAR_03376 [Clostridium asparagiforme
           DSM 15981]
          Length = 281

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 103/274 (37%), Gaps = 41/274 (14%)

Query: 1   MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MKL  R +  ++S V A V   +A+             I         ++     +  G 
Sbjct: 3   MKLNNRFIFGILSLVLAAVIAFVAL-----------PTIARQTNGKAEIVRITQPVLKGE 51

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +T +  E V     N+            ++ +++G+ V   + +GD I   K+      
Sbjct: 52  KITSDNAEVVEVGGYNLPSNVAH------SLSDVEGLYVTADLAEGDYILTSKVSSVPVS 105

Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              +L  +P GK A +M + +++S +   ++PND + +      +E  P     L  ++V
Sbjct: 106 SDVALNDIPSGKVAISMTVKTLASGLSDKLQPNDIIRIYHFLETAEEVPE----LRFVKV 161

Query: 177 IAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           +++                DE     +T T+  TP QA+ +   ++     + L S  + 
Sbjct: 162 LSVTDSDGVNVDNTKEPTEDEERQQSATITVLATPEQARIITEMENDGVAHVALISRNND 221

Query: 227 NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260
             +         +  + K +Q I     + +DGE
Sbjct: 222 QLAEE------LLAAQDKTLQEIYFPETLTEDGE 249


>gi|326202872|ref|ZP_08192739.1| SAF domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325986949|gb|EGD47778.1| SAF domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 216

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 36/225 (16%)

Query: 3   LTRLMG---IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
             RL+    ++  G+F ++   I   + + + + TE        K + V+++  ++  G 
Sbjct: 2   SKRLIIKTILICLGLFLILDSAIFAYIFTKYPINTE--------KTVAVVVATENIKEGT 53

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           V+    L         V  G   ++        + G      I + D IR   L++R + 
Sbjct: 54  VIEEGFLRKKQVYASGVNSGVETEI------GNVAGKKALTNIHRDDYIRAHDLLERKDW 107

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--- 176
                    +R   + +S+   +  +I+   +VD+ + R  SE       +L  I+V   
Sbjct: 108 Y-----RDDERIIILPVSMEERLANLIRKGSYVDIRLQRDTSE---VTEDILYKIQVKDV 159

Query: 177 -----IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
                IA+D     + +        L L     + + +A    KL
Sbjct: 160 LDDAGIALDSKSAVNSKTAYLK---LILGKTDREKIYSASRSGKL 201


>gi|302536562|ref|ZP_07288904.1| flp pilus assembly protein CpaB [Streptomyces sp. C]
 gi|302445457|gb|EFL17273.1| flp pilus assembly protein CpaB [Streptomyces sp. C]
          Length = 207

 Score = 63.8 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 24/175 (13%)

Query: 49  LIS---KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           +++   K D+A    +T    E V  P+  + D  +DD      +  L G +    + KG
Sbjct: 41  VVAYRVKSDIAPYSALTAGQFEEVKVPKRWLSDTAVDD------LGALRGKIALTTLKKG 94

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
             ++ +  VD+        L  G++   + I  ++ V G I     V+++     ++   
Sbjct: 95  SLLQSDMFVDKPQ------LQAGEQEIAIMIDAATGVAGKITSGAKVNIIATFKGAKETD 148

Query: 166 TVT--VVLSNIRVI------AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
                ++++N RV+      A+D + D           T  L     + +  A+S
Sbjct: 149 PSRSVIIVANARVLGVGKLTALDKDSDRKGPAEAVP-ITFALNTKDTQRVAYAES 202


>gi|311697131|gb|ADQ00003.1| pilus assembly, Flp-type CpaB [marine bacterium HP15]
          Length = 305

 Score = 63.8 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 84/236 (35%), Gaps = 16/236 (6%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + + V G+     G            Q +    E        +I+K  L  G V+    +
Sbjct: 19  ISLAVYGLLLDTPGTARQMSSLASEGQVQRPTEEPELPSFTYVIAKQTLQAGEVLERTAV 78

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
             V        +   +            G  +   + KG PI    L  +    +  LL 
Sbjct: 79  MAV--------ESTEELEGLVELESLPFGEPLTARVDKGLPISRSLLELQNP--VQQLLE 128

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNID- 184
           +G +A  ++++  S+VGG+I+P D VD+    S  +    V+  + S I V+A+      
Sbjct: 129 RGHKAVAVELTNLSSVGGLIRPGDSVDIFASFSEEDGASAVSTRLFSAIPVLAVRGATSV 188

Query: 185 ----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
                D+      T  L +       L  A S ++L+       + +P S+  + V
Sbjct: 189 TDDLDDDERRRNPTMVLAIPESDMSKLTLALSESRLTFAATKPIEEDPVSTVTAGV 244


>gi|163840497|ref|YP_001624902.1| hypothetical protein RSal33209_1753 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953973|gb|ABY23488.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 227

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 17/192 (8%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +T         L +  DL  G  ++ + +  +  P   +    +    Q        G  
Sbjct: 44  LTPANQPVETALAASKDLPAGSTISASDMVLLKVPLAAIPQAALARPSQA------IGQQ 97

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           +   + KG  +    L+ +    L +  P G  A  + +S +     ++ P   V VV+ 
Sbjct: 98  LAGALRKGQILTDTSLLGQ---SLLTGTPAGSVAVPLRLSDA-GTAKLVAPGQLVTVVLT 153

Query: 158 RSLSERKPTVTVVL-SNIRVI--AIDHNIDSDERVLVGS----TATLELTPMQAKALVAA 210
              S  +     VL ++I V+         +    L G        +  +  Q+K L  A
Sbjct: 154 NEDSTGRAENGTVLAASIPVLWSQTGAQTANGNSWLPGKEADGLVVVAASAEQSKTLAGA 213

Query: 211 QSVAKLSLVLRS 222
            +  K+SLVL S
Sbjct: 214 STRGKISLVLVS 225


>gi|257057235|ref|YP_003135067.1| SAF domain-containing protein [Saccharomonospora viridis DSM 43017]
 gi|256587107|gb|ACU98240.1| SAF domain-containing protein [Saccharomonospora viridis DSM 43017]
          Length = 221

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
             + VL++   L +G  ++ + +     P E   DG +    Q           +     
Sbjct: 56  PRVPVLVAARTLPLGSTLSEDDVRVAEVPAELRPDGALVTPDQA------VDRRLVGAAR 109

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           +G+P+   + +D  NG      P G     + ++ +  +  +++    VDVV   +  E 
Sbjct: 110 EGEPLTDLRFLDARNG------PPGSTTVPLRLTDA-GMTRLLRSGTRVDVV---TPGEG 159

Query: 164 KPTVTVVLSNIRVIAIDH-NIDSDERVLVGST---ATLELTPMQAKALVAAQSVAKLSLV 219
                V+  N  V+++     D D+  L         + +   QA  + AA     +++ 
Sbjct: 160 VRQARVLAENATVVSVVTPEPDRDDSPLARQNTPLVLVSVPDEQAPHVAAAALGNPVTVT 219

Query: 220 LR 221
           LR
Sbjct: 220 LR 221


>gi|295396211|ref|ZP_06806393.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970999|gb|EFG46892.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 173

 Score = 63.0 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 18/162 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            ++++   +  G V+T  ++    FP + + +  + D  Q      + G      +  G 
Sbjct: 11  RIVVAHTRIDPGTVITARLVTTRVFPPQLIPENAVTDPAQ------VVGTTSASSLDAGT 64

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           P+    L++       + +P G     + +S  +    +++P   + V    S       
Sbjct: 65  PVTTTALLESA----PANIPPGHVRVPISVSDPATTS-VLRPGHRIQVYSSTSEEANS-- 117

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
              ++ +  V+++     +D+     S  T+ ++   A  L 
Sbjct: 118 ---LVDDALVVSV--TTANDQFTGQTSVVTIAVSQEDAPKLA 154


>gi|254381960|ref|ZP_04997323.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194340868|gb|EDX21834.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 205

 Score = 63.0 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 23/205 (11%)

Query: 49  LIS---KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           +++   KGD+A    ++    E +  P+  + D  + D      +  L   +    + KG
Sbjct: 13  VVAYRVKGDIAPYSPLSAGQFEQITVPKRWLSDTAVSD------LGALKDKIALTTLKKG 66

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--R 163
             ++ +  V R        L  G++   + I  ++ V G I P   V+++      +   
Sbjct: 67  SLLQTDMFVARPQ------LQAGEQEIAIMIDAATGVAGKITPGARVNILGTFKGKKPTD 120

Query: 164 KPTVTVVLSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LS 217
                V+++  RVI +            +        T  L+    + +  A+S A+ + 
Sbjct: 121 PDQSLVMVAGARVINVGKLTPLDKTSDKKGPSEAVPITFALSTKDTQRVAYAESFAEHVR 180

Query: 218 LVLRSIADLNPSSSEDSDVWDVQEE 242
           L L +    +P S  D       ++
Sbjct: 181 LALVAAGPESPVSPGDRSYTLEGDK 205


>gi|163846106|ref|YP_001634150.1| SAF domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523842|ref|YP_002568312.1| SAF domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667395|gb|ABY33761.1| SAF domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447721|gb|ACM51987.1| SAF domain protein [Chloroflexus sp. Y-400-fl]
          Length = 350

 Score = 63.0 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 114/329 (34%), Gaps = 96/329 (29%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV-----QTEEVITENPA-KFINVLISKGD 54
           M+   L+ +++ G+  ++ G+ A  L+          QT EV     A   ++V+ ++ D
Sbjct: 1   MRRGALLFLLI-GLIVIIGGLAAFLLLRGGAATSTTSQTPEVPPPPTAVPLVSVVQARVD 59

Query: 55  LAVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           L    ++  P++L+ V  P         D+ ++ + + ++ G L+  P++ G  IR + +
Sbjct: 60  LEANTLLNDPSLLDVVEVPVTE-----FDEANEFSNINDVLGKLLINPVVAGQSIRKDNI 114

Query: 114 VDRGNGGLSSLLP---KGK---RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165
                 GL+  +P    G+   +A  + ++  S V   +  ND VDV+   S+  +    
Sbjct: 115 ---REAGLAQRIPTAEPGQAQVKAYPLIVNSLSGVADQVAVNDFVDVIATFSVERQIIRP 171

Query: 166 ---------------------------TVTVVLSNIRVI--------------------- 177
                                      +   ++   +V+                     
Sbjct: 172 GPVQVITVNDVDQLVREYQYGENQTFFSTKTIIQRAQVLQIVRPALPAPTEGEETTTEAV 231

Query: 178 ------------AIDHNIDSDERVLVGST-----------ATLELTPMQAKALVAA-QSV 213
                       A    I   +    G+T             L LT  + + L  A QS 
Sbjct: 232 TPPASSSLPQVDASGQPITGAQTAEGGATTPSTLTEGVWVVVLALTDQEIELLEFALQSQ 291

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
           A++ L LR   D    S+    +  +  E
Sbjct: 292 ARIVLALRGANDDAIESTSGVTLDLLVRE 320


>gi|317133732|ref|YP_004089643.1| hypothetical protein Rumal_3294 [Ruminococcus albus 7]
 gi|315450194|gb|ADU23757.1| hypothetical protein Rumal_3294 [Ruminococcus albus 7]
          Length = 253

 Score = 62.6 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 35/232 (15%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + ++++ + A+V G +  +  +                   + +   D   G  +  ++L
Sbjct: 9   ILLILAVISAIVTGTLIYKYCNSTKG--------------FIYVFNDDYKAGAKIEKSML 54

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV------PILKGDPIRLEKLV-DRGNG 119
             +   ++ +  G    +       E    +V         ++K  P+ L  L    G+ 
Sbjct: 55  SPMKVDDQIIKTGQKGGLESYYITGENYSKVVERNEYLLNDVVKNQPLTLVDLAMTSGSS 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
              SL   G  A T+ IS ++AV   ++    V++      S       ++  N+R+IA 
Sbjct: 115 IERSLSGNGM-AVTIPISGTAAVTDELRVGSVVNIY-----SSDASGTKLLFENMRIIA- 167

Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-DLNPSS 230
                        S  T E +P     L+ A +  KL   L S   D N  S
Sbjct: 168 ------RNNENSVSKVTFETSPDDTLDLINAANNKKLYFSLVSPVLDENAHS 213


>gi|118469802|ref|YP_889718.1| hypothetical protein MSMEG_5481 [Mycobacterium smegmatis str. MC2
           155]
 gi|118171089|gb|ABK71985.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 216

 Score = 62.6 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 9/147 (6%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           ++V ++  DL  G  +T   +   +     + DG   DV        + G  +  P+ +G
Sbjct: 53  VDVAVAARDLVPGTALTAEDVRLESRSASTLPDGAQSDV------GAIVGATLAGPMRRG 106

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           + +   +++      L+  +    R   + +  + A+  +I+  D VDV+       +  
Sbjct: 107 EVLTDVRVIGSRLADLA--VGPDARIVPLSLGDA-ALLDVIRAGDVVDVLTTHDEEAKSA 163

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVG 192
           T  ++ S+  V+ +        +  V 
Sbjct: 164 TPRLIASDAVVVLVSQKPKGAGQDRVA 190


>gi|289675700|ref|ZP_06496590.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 160

 Score = 62.6 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 30/170 (17%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------------- 46
           ++  + +V++ +F L A I A   ++         +   P++ +                
Sbjct: 1   MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAVVIPPSEPVTTETAIQTPPTPHVEE 60

Query: 47  ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T + L       +    G         A+ ++ G      +
Sbjct: 61  ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPLGSF------EAIDKIVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
             G  +        G   L+ ++   +RA  + +   +   G + P D+V
Sbjct: 113 TAGSWLTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYV 160


>gi|288870575|ref|ZP_06114611.2| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479]
 gi|288866630|gb|EFC98928.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479]
          Length = 275

 Score = 62.6 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 23/198 (11%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
             I         ++     +  G ++T   +E       N+            + +++ G
Sbjct: 28  PTIARQTNGKTEIVRVSKPVLKGAIITDKNVELAEVGSYNLPANI------ARSTEDVVG 81

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHV 152
                 +++GD I   K+         +L  +P G+ A ++ + +++S +   ++  D V
Sbjct: 82  KYAVSDLMEGDYILSSKISALPLTSDIALNDIPSGRVAISLSVKTLASGLSDKLQAGDIV 141

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAI--------DHNID--SDERVLVGSTATLELTPM 202
            +      +   P     L  +RV+++        D+  +   DE     +T T+  TP 
Sbjct: 142 RIYHFLETAREIPE----LRFVRVLSVTGADGTNIDNTAEPAEDEEKQQSATVTVMATPE 197

Query: 203 QAKALVAAQSVAKLSLVL 220
           QA+ +   ++     + L
Sbjct: 198 QARIITELENDGVAHVAL 215


>gi|220913391|ref|YP_002488700.1| SAF domain protein [Arthrobacter chlorophenolicus A6]
 gi|219860269|gb|ACL40611.1| SAF domain protein [Arthrobacter chlorophenolicus A6]
          Length = 251

 Score = 62.6 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 33/208 (15%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
                      VL+ +  +  G  +      L     P   +    +       ++    
Sbjct: 31  ARAMASTNPKKVLVVEKPIPAGTPINDMTASLVIEDVPATAIAPTALT------SLDSKA 84

Query: 95  GVLVRVPILKGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           G +  V ++ G+ +  E+LV        GG+   +P G +  T ++     VGG I+  D
Sbjct: 85  GTVAAVDLVPGEQLLAERLVAPEALKAEGGV--QIPPGLQEVTFELEPKRVVGGRIQAGD 142

Query: 151 HVDVVMVRSLSERK-----PTVTVVLSNIRVIAIDH--NIDSDERVLVGST--------- 194
           HV +    +    K      +  + L  + V AI       S E    GS          
Sbjct: 143 HVGIGFSFAGGADKAKPADASTQLTLRKVTVTAIQRAPQAASAEAPADGSNPQDTTLPQG 202

Query: 195 ---ATLELTPMQAKALVAAQSVAKLSLV 219
               T+ +  + A  ++ A +   L L 
Sbjct: 203 SLMVTVAVNDIDATKIIYASNNGDLWLT 230


>gi|260892668|ref|YP_003238765.1| SAF domain protein [Ammonifex degensii KC4]
 gi|260864809|gb|ACX51915.1| SAF domain protein [Ammonifex degensii KC4]
          Length = 221

 Score = 62.2 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 33/219 (15%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++   + GV A +A   A+++  P                + V+++  D+ VG VV P+ 
Sbjct: 23  VLMSALFGVAAGLAVWFALQVARP---------------TVPVVVALRDMQVGHVVRPDE 67

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GGLSS 123
           +    +P   V    +    +        G ++     +GD +R ++L   G+    L S
Sbjct: 68  VAVRKYPPVAVPPDAVRKPEEAVGKTVTGGAVL-----QGDVLRKKRLSAEGSLEASLKS 122

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTVVLSNIRVIAIDHN 182
           L P G  A  +    +  + G ++  D VD+     +    K  + VV   + ++     
Sbjct: 123 LAPPGWVAVQLPEGSAQGMLG-LRRGDRVDIYAETPTPGGAKQVLPVVRGAVLLLTPFQE 181

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVL 220
                         + + P  A+AL A      K+SLVL
Sbjct: 182 --------GAKCYVVAVPPDSAQALAAIDVYGKKVSLVL 212


>gi|220927571|ref|YP_002504480.1| SAF domain protein [Clostridium cellulolyticum H10]
 gi|219997899|gb|ACL74500.1| SAF domain protein [Clostridium cellulolyticum H10]
          Length = 218

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 25/181 (13%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K ++V+++  D+  G V+    L      E  V      D+        ++G      I 
Sbjct: 38  KQVSVVVATADIKKGTVIEERFLRKKDVWESTVNSSIERDI------GNIEGKKALTDIY 91

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           K D IR   L+++ +          +R   +  ++   +  +I+   +VD+   R   + 
Sbjct: 92  KDDYIRSCDLLEKKDWY-----KDDERIIVLPTNMEERLANLIRKGSYVDI---RLQKDS 143

Query: 164 KPTVTVVLSNIRV--------IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215
                 +L  I+V         A+D     + +          L   + + + +A    +
Sbjct: 144 GEATEDILYKIKVEDVLDETGTALDSKSAVNSKTAYFKLV---LGKKERQKIYSAAKNGR 200

Query: 216 L 216
           L
Sbjct: 201 L 201


>gi|228969168|ref|ZP_04130064.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790514|gb|EEM38219.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|326943829|gb|AEA19719.1| hypothetical protein CT43_P72025 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 269

 Score = 61.8 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 70/189 (37%), Gaps = 21/189 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK       +   + A +  ++A+       V  E     +      V  +K D+     
Sbjct: 1   MKKKSTPKKLAITLAASIGLVVAI-------VGYENYAVSSKVNLQKVYFTKVDIPPRTK 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T ++L+       ++    I + +       ++G      +++   +   K+V +    
Sbjct: 54  ITKDMLQVREVSNSSIPPNAIKNPNDIVGKYTVNG----FGLVENSYVFKNKVVSKDELP 109

Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV--------V 170
            +++  L   + A  + + I ++ G  I P  HVD+    ++ ++     V        +
Sbjct: 110 DAAILNLKPSEVAFPLLVDIETSSGNSIIPESHVDLYFKGTVKDKDEKGEVVEKPIFGRI 169

Query: 171 LSNIRVIAI 179
             ++RV A+
Sbjct: 170 AKHVRVTAV 178


>gi|228943039|ref|ZP_04105540.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228955921|ref|ZP_04117858.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228976628|ref|ZP_04137071.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783097|gb|EEM31233.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228803748|gb|EEM50430.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228816624|gb|EEM62748.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 263

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 19/181 (10%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + +L    VS + A+                 E     +      V  SK D+     +T
Sbjct: 1   MKKLPKKTVSVLIAVGLVATIAGY--------ENYKINSAINPTKVYYSKVDIPPRTKIT 52

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            ++L+    P + +    I +V        ++G      + K   +  +K+V +     +
Sbjct: 53  KDMLQERVIPGDAIAPNAITNVKDLEGKYTVNG----FGVSKNSLLYKDKVVPKDELPDA 108

Query: 123 SLLPKGKRAATMD--ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNIR 175
           ++L   K        + I ++ G  I P+ +VD+     +              V  ++R
Sbjct: 109 AILNLKKSEVAFPLLVDIETSSGNSIIPDSYVDLYFKGKVKNESDHTEKPIFGRVAKHVR 168

Query: 176 V 176
           V
Sbjct: 169 V 169


>gi|167771223|ref|ZP_02443276.1| hypothetical protein ANACOL_02581 [Anaerotruncus colihominis DSM
           17241]
 gi|167666642|gb|EDS10772.1| hypothetical protein ANACOL_02581 [Anaerotruncus colihominis DSM
           17241]
          Length = 279

 Score = 61.1 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 84/234 (35%), Gaps = 35/234 (14%)

Query: 1   MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MKL  R +  ++S + A V   +A+             I         ++     +  G 
Sbjct: 1   MKLNNRFIFGILSLLLAAVIAFVAL-----------PTIARQTNGKEEIVRITQPVLKGE 49

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRG 117
            ++    E V     N+             + +++G+     +  GD I   K+  V   
Sbjct: 50  QISSENAEVVEVGGYNLPSNIAH------QLSDVNGLYATADLAVGDYILTSKISSVPVS 103

Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
           +    + +P GK A ++ + +++S +   ++P D + +      +   P     L  ++V
Sbjct: 104 SDVALNSIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLDTAAEVPE----LRFVKV 159

Query: 177 IAI----------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +++                DE     +T T+  +P QAK +   ++     + L
Sbjct: 160 LSVTDSDGINVDNAKEPTEDEEKQQSATITVLASPEQAKIITGLENDGVAHVAL 213


>gi|296118260|ref|ZP_06836841.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968818|gb|EFG82062.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 223

 Score = 61.1 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 19/182 (10%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVF-DGFIDDVHQPNAMQELDGVLVRVPILKG 105
            +L+   D+  G  +T      V  P + +  +G + D        E+ G ++  P + G
Sbjct: 38  EILVFARDVDAGQELTAADTHLVRVPHDVIPDEGALHDP------DEVVGRIITAPAVAG 91

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           + +   +L+      L+S L  G     + ++    +  ++   D V+VV  +       
Sbjct: 92  EFVTELRLLGDE---LTSQLVPGGHMVPLKLAEPDLIS-LLHHGDTVNVVSSQEDELSPG 147

Query: 166 TVT--VVLSNIRVIAIDHNIDSD----ERVLVGSTAT--LELTPMQAKALVAAQSVAKLS 217
             +   +    RVIA   +I +         VGS AT  L L   QA+ + +A     L+
Sbjct: 148 LFSPLTIAEGARVIATSADISAGAHASSNASVGSPATILLALPADQAQLVASASLSQPLT 207

Query: 218 LV 219
           +V
Sbjct: 208 VV 209


>gi|223984146|ref|ZP_03634297.1| hypothetical protein HOLDEFILI_01590 [Holdemania filiformis DSM
           12042]
 gi|223963878|gb|EEF68239.1| hypothetical protein HOLDEFILI_01590 [Holdemania filiformis DSM
           12042]
          Length = 238

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 80/228 (35%), Gaps = 24/228 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK       +V  + AL A ++   + S   +   E+        ++V IS   L    +
Sbjct: 1   MKKK-----IVFTLTALTAVLV--LIFSGIFLFRRELTRR--LSLVSVPISVSTLPPRHL 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAM-QELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           +T + L W+  P   +    + +  +   +   L+G +        + +           
Sbjct: 52  ITVDDLTWIDVPSAYLQADILWEEAELVGLWTRLEGTIPAGSFFYQEMLD----APEAMA 107

Query: 120 GLSSLLPKGKRAA---TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
             S  L    +A     + IS  S    +++P   VD+ +     E +  +  +L  +RV
Sbjct: 108 DFSVTLLNKDQAVFPLAVTISEISGQ--LMQPGQQVDLYVYGKWPEGQEMMDCLLRGVRV 165

Query: 177 IAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           + +       I   +  L  ST  L +       L  A+   ++ L L
Sbjct: 166 LELQNRNGERIGQADDTLP-STVLLAVDQTYLAYLSIAEKKGRIELYL 212


>gi|283795336|ref|ZP_06344489.1| putative Flp pilus assembly protein CpaB [Clostridium sp. M62/1]
 gi|323484181|ref|ZP_08089551.1| hypothetical protein HMPREF9474_01302 [Clostridium symbiosum
           WAL-14163]
 gi|291076992|gb|EFE14356.1| putative Flp pilus assembly protein CpaB [Clostridium sp. M62/1]
 gi|323402623|gb|EGA94951.1| hypothetical protein HMPREF9474_01302 [Clostridium symbiosum
           WAL-14163]
          Length = 279

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 84/234 (35%), Gaps = 35/234 (14%)

Query: 1   MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MKL  R +  ++S + A V   +A+             I         ++     +  G 
Sbjct: 1   MKLNNRFIFGILSLLLAAVIAFVAL-----------PTIARQTNGKEEIVRITQPVLKGE 49

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRG 117
            ++    E V     N+             + +++G+     +  GD I   K+  V   
Sbjct: 50  QISSENAEVVEVGGYNLPSNIAH------QLSDVNGLYATADLAVGDYILTSKISSVPVS 103

Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
           +    + +P GK A ++ + +++S +   ++P D + +      +   P     L  ++V
Sbjct: 104 SDVALNSIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLDTAAEVPE----LRFVKV 159

Query: 177 IAI----------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +++                DE     +T T+  +P QAK +   ++     + L
Sbjct: 160 LSVTDSDGINVDNAKEPTEDEEKQQSATITVLASPEQAKIITGLENDGVAHVAL 213


>gi|220913382|ref|YP_002488691.1| hypothetical protein Achl_2637 [Arthrobacter chlorophenolicus A6]
 gi|219860260|gb|ACL40602.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6]
          Length = 258

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 43/265 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+G + + V A+   ++ +       VQ  +       +   VL+ +  +  G  
Sbjct: 1   MK-ARLLGGIAALVIAIAGTVLLIAY-----VQGADARAMAGTETAEVLVVQAPIPAGTP 54

Query: 61  VTP--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
            +    ++   + P+  +    + ++ +          +  V ++ G+ +   +LV+  +
Sbjct: 55  ASEISGMVAKKSLPKSALTGDTVTNLKEEGT------KVTAVSLVPGEQLLASRLVEAAS 108

Query: 119 --GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-------VRSLSERKPTVTV 169
             G     +P G +  ++ + I   VGG I   D V V +           + +     +
Sbjct: 109 FMGPSRVAVPGGMQEISLKLPIERVVGGKIAAGDTVGVFISLTETSGSGDNAAQSSGTQL 168

Query: 170 VLSNIRVIAID-------HNIDSDERVLVGS------------TATLELTPMQAKALVAA 210
               + V A              D     GS              T+    + A+ +V A
Sbjct: 169 TFHKVLVTATQYSNGSPSQASSGDAGASEGSLSSNENQSDGNYLITVASNSVDAERMVYA 228

Query: 211 QSVAKLSLVLRSIADLNPSSSEDSD 235
               K+ L  +   D    +S   D
Sbjct: 229 AEFGKVYLS-KEPKDATEGNSGVVD 252


>gi|312126639|ref|YP_003991513.1| SAF domain-containing protein [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776658|gb|ADQ06144.1| SAF domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 208

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 29/177 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKL ++    +  + A         L++          T N  ++  ++++K D+  G  
Sbjct: 1   MKLKKIGLFFIFLILAAGLAFAEYYLLTN---------TANKPQYQLIIVAKQDIPAGAQ 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + L                 VH     +++ G      I  G+PI  E L D     
Sbjct: 52  ITLDKLSVARV-------DVRTPVHAATTRKQILGRYALYDIKAGEPIIPEHLTDLSIDT 104

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           L+     G +   + I         I   D +++  V            +   +RVI
Sbjct: 105 LA----NGMKLTAVRIDPVP--YDFINIGDEIELGCVIQD-------KTLSWRVRVI 148


>gi|309792344|ref|ZP_07686813.1| SAF domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225610|gb|EFO79369.1| SAF domain-containing protein [Oscillochloris trichoides DG6]
          Length = 347

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 94/305 (30%), Gaps = 83/305 (27%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
                T+          ++V+ ++ D+A   V+    +E V      +     +   Q +
Sbjct: 35  GGSPATDVTSEPTAIPLVDVVHARFDIAANTVIKDTDVELVK-----IKQTEFNPDTQSS 89

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG------KRAATMDISISSAV 142
            + ++ G L    I+   PI  + L++ G   LS  +P         +A  + ++  S V
Sbjct: 90  NLMDVVGKLTTSKIVAEQPINTKNLIEPG---LSQQIPTAEADRSTNKAYPLIVNNLSGV 146

Query: 143 GGMIKPNDHVDVVMVRSLSERKP----------------------------TVTVVLSNI 174
              IKP D VDVV+   +  R+                             T   ++   
Sbjct: 147 SDQIKPGDFVDVVVTFQIPRRQSYPTGLTYEEVGGQMIPMIERELKDELFYTTKTIVQRA 206

Query: 175 RVIAI--DHNIDSDERVLVGS------------------------------------TAT 196
           +V+ I        +E  + GS                                    T  
Sbjct: 207 QVLKILRPQVALPEETPVAGSDAPVNSSSLPEVDASGQPIAPGTEADTTGSISQGAWTLV 266

Query: 197 LELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDS--DVWDVQEEGKEIQIIKAGV 253
           L +   + + +  A S   ++ LVLR   D     +     D+   +      Q I A V
Sbjct: 267 LSVNDQEVELIEFALSTNSRIVLVLRGAGDTEFEETIGVTYDLLTSEFGVPVPQQIPANV 326

Query: 254 IVNKD 258
           +   D
Sbjct: 327 LDTDD 331


>gi|228968939|ref|ZP_04129887.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790746|gb|EEM38399.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 267

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V+ +IA+ LV+      E     +      V  SK D+     +T ++L+    P + + 
Sbjct: 13  VSVLIAVGLVAT-IAGYENYRINSAINPTKVYYSKVDIPPRTKITKDMLQERVIPGDAIA 71

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD-- 135
              I +V        ++G      + K   +  +K+V +     +++L   K        
Sbjct: 72  PNAITNVKDLEGKYTVNG----FGVSKNSLLYKDKVVPKDELPDAAILNLKKSEVAFPLL 127

Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNIRV 176
           + I ++ G  I P+ +VD+     +              V  ++RV
Sbjct: 128 VDIETSSGNSIIPDSYVDLYFKGKVKNESDHTEKPIFGRVAKHVRV 173


>gi|310830431|ref|YP_003965532.1| hypothetical protein PPSC2_p0070 [Paenibacillus polymyxa SC2]
 gi|309249898|gb|ADO59464.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 291

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 29/218 (13%)

Query: 1   MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M+   +L+  V+   F   +G+         + Q      ++    + VL++K D++ G 
Sbjct: 1   MRGKNKLLLTVLLITFVATSGMF--------YYQNVYAPKQDEKNKVFVLVAKKDISEGA 52

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
             TP+ +  +   +  V   FI +        E+ G      +   + +   +     +G
Sbjct: 53  AFTPDNIGAIKMDKNMVLPNFITN------FDEMKGKTASTDLFSNEIVTKRQTTGVSDG 106

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
             S     G  AA M  S        IK  D V V +  ++  +      +     V+ +
Sbjct: 107 --SKKFKLGIEAANMPTS--------IKNGDAVRVFVQTTIGNKIFE---IFDKKEVVNV 153

Query: 180 D-HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           +     S +   +  +  L ++  +A     AQ    +
Sbjct: 154 NFKKSASGQESQLVESVDLLVSDKEAVTYFDAQKAGSI 191


>gi|184200331|ref|YP_001854538.1| hypothetical protein KRH_06850 [Kocuria rhizophila DC2201]
 gi|183580561|dbj|BAG29032.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 223

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 18/192 (9%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +    A+   V+ +  ++  G  +    L    FPE     G         +  E  G  
Sbjct: 42  LAPPGARTAPVVTAAHEVPAGTSLGAGDLAVSQFPEALAPTGAY------ASPAEAQGQT 95

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
             V +  G P+    ++  G   + +  P G  AAT+ +S   AV   ++P D VDVV  
Sbjct: 96  SAVALTPGQPVTSSTVLGPG---VLTGQPTGTTAATVRVSD-PAVLRHVRPGDAVDVVH- 150

Query: 158 RSLSERKPTVTVVLSNIRVI-AIDHNIDSDERVLVGST------ATLELTPMQAKALVAA 210
            +   R          + V+ A      +   +L   T        L      A  L + 
Sbjct: 151 HTDEARSARGRTAARAVTVLWAAGAPSGTGSSLLAAGTDDDAGLVVLAAPRETAAELASL 210

Query: 211 QSVAKLSLVLRS 222
           +   ++SLVL S
Sbjct: 211 EGSGRVSLVLVS 222


>gi|296140955|ref|YP_003648198.1| SAF domain protein [Tsukamurella paurometabola DSM 20162]
 gi|296029089|gb|ADG79859.1| SAF domain protein [Tsukamurella paurometabola DSM 20162]
          Length = 218

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 23/155 (14%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
             +GV  ++A ++A             V +E       VL +  +L  G  +    L   
Sbjct: 29  AAAGVLTVLALVVA-------------VTSEPSGPQTEVLTAARELGPGGRLADADLRLT 75

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
             P E      +       +  +  G  V  P+  G+ +   +++     G    +  G 
Sbjct: 76  TVPAELAPPDALT------STGQAVGRSVTGPVGAGEILTDRRVLTDRTAG---QIRPGS 126

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           R   + +  ++ +  +++P D VDVV  R     +
Sbjct: 127 RLVPVALQDAATMD-LLRPGDVVDVVAQRKARAGE 160


>gi|302335340|ref|YP_003800547.1| SAF domain protein [Olsenella uli DSM 7084]
 gi|301319180|gb|ADK67667.1| SAF domain protein [Olsenella uli DSM 7084]
          Length = 229

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            +E I     + + +++S+G L  G VV    +    +  +      +       ++ ++
Sbjct: 36  RDEAIARYGGEVVRLVVSRGPLEPGDVVDQADVSERDWVTDLAPSDALT------SLDDV 89

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
            G  V VP+    P+         +    + +P G  A ++ I+    V   I     V 
Sbjct: 90  VGREVTVPVAANAPVTALAF---RDVAAMADIPAGHVALSIPITDKLGVSRSIGVGTSVI 146

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
             +V          T + ++  V+A   +      +  G   TL +      A+++A + 
Sbjct: 147 GYVVDDKG-----STPIATDATVLA---SPGETSGLGTGGQLTLAIRSEDVDAVLSASAA 198

Query: 214 AKLSLV 219
             L +V
Sbjct: 199 GTLRIV 204


>gi|157502150|ref|YP_001485249.1| hypothetical protein pBMB67_063 [Bacillus thuringiensis]
 gi|228942717|ref|ZP_04105245.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975828|ref|ZP_04136358.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982331|ref|ZP_04142607.1| Hypothetical secreted protein [Bacillus thuringiensis Bt407]
 gi|87133455|gb|ABD24365.1| hypothetical secreted protein [Bacillus thuringiensis]
 gi|228777436|gb|EEM25727.1| Hypothetical secreted protein [Bacillus thuringiensis Bt407]
 gi|228783854|gb|EEM31903.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816928|gb|EEM63025.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 272

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 69/179 (38%), Gaps = 20/179 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           ++   A   G++   +   ++  + +V          V  +K D+     +T ++L+   
Sbjct: 13  LAITLAASIGLVVAIVGYENYAVSSKV------NLQKVYFTKVDIPPRTKITKDMLQVRE 66

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               ++    I + +       ++G      +++   +   K+V +     +++  L   
Sbjct: 67  VSNSSIPPNAIKNPNDIVGKYTVNG----FGLVENSYVFKNKVVSKDELPDAAILNLKPS 122

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV--------VLSNIRVIAI 179
           + A  + + I ++ G  I P  HVD+    ++ ++     V        +  ++RV A+
Sbjct: 123 EVAFPLLVDIETSSGNSIIPESHVDLYFKGTVKDKDEKGEVVEKPIFGRIAKHVRVTAV 181


>gi|320526981|ref|ZP_08028170.1| putative Flp pilus assembly protein CpaB [Solobacterium moorei
           F0204]
 gi|320132566|gb|EFW25107.1| putative Flp pilus assembly protein CpaB [Solobacterium moorei
           F0204]
          Length = 237

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAG--IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           MK  +  GI  + +  L A   I+A R                        I+K D+   
Sbjct: 1   MKKVKRTGIY-ALILCLWAVGNILAFRY-----------YLAKTINLKTTYIAKHDIPPR 48

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQP-NAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
             +    L  +  PE+ +     ++          + G++ +  +   D +  EK V   
Sbjct: 49  TQIQTEDLTTIQVPEKYMQAYTWNEKSDIVGKYTTVQGMIPKGSMFYKDMLYNEKEV--- 105

Query: 118 NGGLS-SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              L+ + L +G    T++ +   +  G I+   +VD+ +  S  +  P   +++ +  V
Sbjct: 106 -RDLAITKLQEGMTIFTLETN--VSALGSIEEGMYVDIYVSISQKKDVPITGILIRHAEV 162

Query: 177 IAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
           I+I      ++  ++   V     L +       L  A S+ ++ L
Sbjct: 163 ISIKDHKGLSLKDEQSSKVPYFIELGINQSDIDYLSLASSLGEVRL 208


>gi|119715033|ref|YP_921998.1| SAF domain-containing protein [Nocardioides sp. JS614]
 gi|119535694|gb|ABL80311.1| SAF domain [Nocardioides sp. JS614]
          Length = 211

 Score = 60.3 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 19/164 (11%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DL  G V+ P  L  V F  ++V  G  DD        +  G  +  P+  G+P+  
Sbjct: 53  AARDLTAGTVLAPGDLRAVGFAPDSVPAGASDDAI------DAVGRTLAAPLRAGEPVTD 106

Query: 111 EKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
            ++V     +G        G  A  + +  +  +  +++  D VD+V            +
Sbjct: 107 VRVVGPALTDGY------PGLTAVPVRLPDA-GMVDLLRVGDRVDLVAADPQGGG---AS 156

Query: 169 VVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
           VV +++ V+A+     D     L G    +   P     +  A 
Sbjct: 157 VVATDVPVLAVPAAGPDVGATGLPGRLVVVGAEPADVARIADAS 200


>gi|306817241|ref|ZP_07450987.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307700399|ref|ZP_07637438.1| putative Flp pilus assembly protein CpaB [Mobiluncus mulieris
           FB024-16]
 gi|304649921|gb|EFM47200.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307614384|gb|EFN93614.1| putative Flp pilus assembly protein CpaB [Mobiluncus mulieris
           FB024-16]
          Length = 198

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 22/184 (11%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
                 L+++  +  G  + P  L         +   +           E+ G    V +
Sbjct: 33  PAGTRALVARVPICAGCEINPKDLRERRLDPGALPQHYF------VQAGEVAGKKAAVAL 86

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +    L++     L+     G+ A  + +    AV G  K    V++       +
Sbjct: 87  EPGTVVAPGLLLENSLADLA----PGEVAFALSVED-PAVAGFSKTGQIVEIWSSSPSVD 141

Query: 163 RKPTVTVVLSNIRVI----AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
            +    ++ +N+RV+    A D  + +     +     L  +   A+ +VAA+S   LS 
Sbjct: 142 NQ----LLATNVRVLGMEAAKDSLLGATSSKAI---VYLGASEEAARKVVAAKSSHDLSF 194

Query: 219 VLRS 222
           VLR 
Sbjct: 195 VLRG 198


>gi|227876349|ref|ZP_03994461.1| hypothetical protein HMPREF0577_1762 [Mobiluncus mulieris ATCC
           35243]
 gi|269975913|ref|ZP_06182917.1| putative pilus assembly transmembrane protein [Mobiluncus mulieris
           28-1]
 gi|227842890|gb|EEJ53087.1| hypothetical protein HMPREF0577_1762 [Mobiluncus mulieris ATCC
           35243]
 gi|269935741|gb|EEZ92271.1| putative pilus assembly transmembrane protein [Mobiluncus mulieris
           28-1]
          Length = 198

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 22/184 (11%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
                 L+++  +  G  + P  L         +   +           E+ G    V +
Sbjct: 33  PAGTRALVARVPICAGCEINPKDLRERRLDPGALPQHYF------VQAGEVAGKKAAVAL 86

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +    L++     L+     G+ A  + +    AV G  K    V++       +
Sbjct: 87  EPGTVVAPGLLLENSLADLA----PGEVAFALSVED-PAVAGFSKTGQIVEIWSSSPSVD 141

Query: 163 RKPTVTVVLSNIRVI----AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
            +    ++ +N+RV+    A D  + +     +     L  +   A+ +VAA+S   LS 
Sbjct: 142 NQ----LLATNVRVLGMEAAKDSLLGATSSKAI---VYLGASEEAARKVVAAKSSHDLSF 194

Query: 219 VLRS 222
           VLR 
Sbjct: 195 VLRG 198


>gi|219850069|ref|YP_002464502.1| Flp pilus assembly protein CpaB [Chloroflexus aggregans DSM 9485]
 gi|219544328|gb|ACL26066.1| Flp pilus assembly protein CpaB [Chloroflexus aggregans DSM 9485]
          Length = 351

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 89/278 (32%), Gaps = 84/278 (30%)

Query: 44  KFINVLISKGDLAVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
             +NV+ +  D+    ++  P +LE V  P         D+ ++ +++ ++ G LV  P+
Sbjct: 49  PLVNVVQAAVDIEANTLLNDPTLLEVVEVPITE-----FDEQNEFSSINDVFGKLVINPV 103

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGK---RAATMDISISSAVGGMIKPNDHVDVVMVRS 159
             G PI  + + + G   +      G+   +A  + ++  S V   +  ND VDV+   S
Sbjct: 104 QAGRPITRDNVRNPGLAQMLPTAEPGQPRVKAYPLVVNNLSGVADQLAVNDFVDVIATFS 163

Query: 160 LSERKP-----------------------------TVTVVLSNIRVI------------- 177
           +  +                               T   ++   +V+             
Sbjct: 164 VERQIIRPGPRQVITVNDVDQVIREYEFGETQTFLTTKTIIQRAKVLQILRPAIPTPATP 223

Query: 178 -----------------------AIDH--NIDSDERVLVGSTAT-------LELTPMQAK 205
                                  A          E    GST T       L L   Q +
Sbjct: 224 EGEAAPAQGEALPTQSSSLPQVDASGQPITSSQLENATPGSTLTQSIWVVMLALNDQQIE 283

Query: 206 ALVAA-QSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            L  A QS A++ L LRS  D+    +    +  +  E
Sbjct: 284 LLEFALQSNARIVLALRSSDDVAIEQTSGITIDLLVRE 321


>gi|84498177|ref|ZP_00996974.1| hypothetical protein JNB_18858 [Janibacter sp. HTCC2649]
 gi|84381677|gb|EAP97560.1| hypothetical protein JNB_18858 [Janibacter sp. HTCC2649]
          Length = 263

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 44/234 (18%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN----ILEWVA 70
            AL   ++ +        +  E           V +S+  +  G  +       ++    
Sbjct: 2   LALAGAVLVLLYAQGADKRALEGQQPQ-----TVYVSEKVVPAGTTLKDAERSGLITRTQ 56

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
              +    G +  +   N+       + R  +  G  +          G  +  +  G  
Sbjct: 57  VASKAKPAGALAGITSDNSS-----FVARADLPPGQVVLSAAFGSERLGQKAIGVKSGMV 111

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------------PTVTVVLSNIRVI 177
           A ++ +   + VG  +     + +     L +                  +V+L+ + VI
Sbjct: 112 AVSVSLEDPNRVGAFVTAGSTITIYDTYELKKLGTDEATAQYNDLSVKGTSVLLTKVSVI 171

Query: 178 -----------AIDHNIDSDERVLVGST------ATLELTPMQAKALVAAQSVA 214
                      A +            ST       T+ELTP  +  LV A    
Sbjct: 172 GIGTTSLSAPVATEQAEKDKGAAPTTSTPVQSYLVTVELTPADSVKLVHAIQHG 225


>gi|283787692|ref|YP_003367557.1| tight adherence protein RcpC [Citrobacter rodentium ICC168]
 gi|282951146|emb|CBG90837.1| putative tight adherence protein RcpC [Citrobacter rodentium
           ICC168]
          Length = 290

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 31/204 (15%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--------FINVLIS 51
           M+   L+  I +  +F  +AG+    L+       E V  + PA          I+V ++
Sbjct: 1   MRKKSLVVYIYIVMIFVGLAGLF---LIMNSPQSAESVTDKAPAPAIKKEEQEKISVAVA 57

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           + DL    V+T             +  G  +        + +    + VP+ KG  I   
Sbjct: 58  ERDLPAKAVLTAEDFRIKMV---EITRGGHEKASFALGNKSIKDYALNVPVAKGTFIPGS 114

Query: 112 KLVDRG-NGGLSSLLPKGKRAATMDISIS-SAVGGMIKPNDHVDVVMVRSLSERK----- 164
            LV  G    +S  L  G    T  +S + + +   I+    +D+ MV    +       
Sbjct: 115 ALVKPGTTEYISLFLRPGHVLYTFRLSEADNYLFDNIRAGQFIDIFMVYGKKKENGKEML 174

Query: 165 --PTVTV-------VLSNIRVIAI 179
             P+ T+       ++ N RV+A+
Sbjct: 175 VSPSTTIESTRLKPLMKNRRVLAL 198


>gi|90409527|ref|ZP_01217563.1| hypothetical protein PCNPT3_13790 [Psychromonas sp. CNPT3]
 gi|90309368|gb|EAS37617.1| hypothetical protein PCNPT3_13790 [Psychromonas sp. CNPT3]
          Length = 84

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           S  TLE+ P QA  ++ A  +  LS++LR+ +D +  ++   D+ D+  E K++Q
Sbjct: 6   SAVTLEVLPAQANTVILANQLGTLSMLLRNSSDNSILANTQVDIGDIFPEIKQVQ 60


>gi|328884723|emb|CCA57962.1| hypothetical protein SVEN_4676 [Streptomyces venezuelae ATCC 10712]
          Length = 235

 Score = 59.9 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 72/182 (39%), Gaps = 21/182 (11%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           KGD+A    +  N  E +  P+  + +  + D      ++ ++G +    +  G  ++ +
Sbjct: 47  KGDVAPYTPLRANQFEKITMPKRWLSETAVTD------LRVIEGRIAVTRLKAGSLLQSD 100

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169
            +V+R        L  G++   + I  ++ V G I     V++         ++     +
Sbjct: 101 MIVERPE------LQPGQQEIAIMIDAATGVAGKITAGATVNIYATFAGEKKDQPAQSRM 154

Query: 170 VLSNIRVIAIDH------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRS 222
           +++  RV+ +        +     R       +  L+ + A+ +  A+S A+ + L L +
Sbjct: 155 IVAGARVLDVGKLTPIRESSQGSARTNDAVPISFALSTLDAQRVAYAESFAEHVRLALVA 214

Query: 223 IA 224
             
Sbjct: 215 PT 216


>gi|226310155|ref|YP_002770049.1| hypothetical protein BBR47_05680 [Brevibacillus brevis NBRC 100599]
 gi|226093103|dbj|BAH41545.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 279

 Score = 59.9 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++ +V+S + A +AG +         +Q  + +     + + +  +  D+    ++
Sbjct: 5   KRRAIIFLVLSFLLAALAGFL--------FLQKIKDMNAQLGEMVEIYEANADIPSRALI 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
            P+ L     P++   D ++ D         L   +  VP+ KGD I    ++   N   
Sbjct: 57  QPDQLTVREIPKKYADDSYVIDKAS------LKNQVTIVPLSKGDIITKN-IMKPAN--- 106

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
             +  +  R  T+  S +      ++  D VD+++   +S  KP   V + ++ V
Sbjct: 107 -VVRDENNRLVTVFSSNNIVFDQELEALDRVDIIISHEVSG-KPVTEVFMKDVPV 159


>gi|227501477|ref|ZP_03931526.1| SAF domain protein [Corynebacterium accolens ATCC 49725]
 gi|227077502|gb|EEI15465.1| SAF domain protein [Corynebacterium accolens ATCC 49725]
          Length = 241

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 32/234 (13%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
             ++   +     +           +   VL+   DL  G  ++   +     P  ++  
Sbjct: 24  GVLVRRAIALVLLIAALASAVSRAKELPQVLVFSHDLPAGAELSAADVSLERLPSSSIPS 83

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
             + D     A  +L G ++     KG+ +  ++L+  G   +SSL+     A       
Sbjct: 84  SALAD-----APSDLAGRIITAAAGKGEVVTSQRLL--GQELVSSLVANSGSA-----DS 131

Query: 139 SSAVGGMIKP--------------NDHVDVVMVRSLSERKP-TVTVVLSNIRVIAIDHNI 183
                G + P               D VD+V     ++ +P T  V+ S  RV+    + 
Sbjct: 132 KEGGSGRMIPVKLADPDIIPHLHHGDTVDIVTANDATDSEPATARVIASGARVV----ST 187

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
            + E  +  +T  L L    A  + AA     L++V+       P +  D+D  
Sbjct: 188 TTAEGEVSSATVLLALPNEHANDVAAASLNQPLTVVIVGDR-AQPQTPVDADPA 240


>gi|312621778|ref|YP_004023391.1| SAF domain-containing protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202245|gb|ADQ45572.1| SAF domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 209

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 20/139 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+L ++    V  V A         L++            N  ++  ++++K D+  G  
Sbjct: 1   MRLKKIGLFFVFLVLATGLAFGEYYLLTN---------IANKPQYQLIIVAKQDIPAGAQ 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + L       +         +H      ++ G      I  G+PI  E L +     
Sbjct: 52  ITLDKLSVARVDIQ-------TPIHAAKTRNQILGKYALYDIKAGEPIIPEHLTNLSVNT 104

Query: 121 LSSLLPKGKRAATMDISIS 139
           L+     G +  T+ I   
Sbjct: 105 LA----NGMKLTTVRIDPV 119


>gi|226307879|ref|YP_002767839.1| hypothetical protein RER_43920 [Rhodococcus erythropolis PR4]
 gi|226186996|dbj|BAH35100.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 248

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 8/129 (6%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +     + V++S  DL  G V+  + +E      + + +G + D         + G  V 
Sbjct: 63  DPATDTVAVVVSSRDLTPGQVIADSDVEIREIDSKQLPEGVVSDTDL------VVGRTVA 116

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            PI  G+ +   +++     GLS +     R   + ++ + AV  M++  D VDV+ V  
Sbjct: 117 GPIRSGETVTDVRVLSPRLAGLS-VGTDDARIVPVRLADA-AVADMLRSGDVVDVLTVGP 174

Query: 160 LSERKPTVT 168
            + R  T  
Sbjct: 175 DTSRTDTSR 183


>gi|255316487|ref|ZP_05358070.1| hypothetical protein CdifQCD-7_19162 [Clostridium difficile
           QCD-76w55]
          Length = 259

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 68/195 (34%), Gaps = 32/195 (16%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
           T++  K + V     ++    V+          P++ +    I +       ++++G ++
Sbjct: 28  TQSQVKPVAVYQYSRNIPENTVIQKGDYIKTFKPKDILTKSMITNE------KDINGKIL 81

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLP-KGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
              + + +      L D       + +     R  ++ + +  AVGG +K  D VD+  V
Sbjct: 82  TTNVYRSEYAIKNNLEDPAKLDEFAKIDLSNLRKVSIPVEMKDAVGGNLKKGDRVDLTFV 141

Query: 158 RSLSERKPTV-------TVVLSNIRVIA---------IDHNID----SDERVLVGST--- 194
           +    +              + ++ V           +D        ++E+  V  +   
Sbjct: 142 KQGDSKNNDTSDSFTYAKTFMQDVLVYNVVDDGGKKYVDQTEGTQSLANEKGEVVESGSL 201

Query: 195 --ATLELTPMQAKAL 207
              T+ +T  QA+ +
Sbjct: 202 SIVTVAVTAQQAEEI 216


>gi|111022595|ref|YP_705567.1| hypothetical protein RHA1_ro05629 [Rhodococcus jostii RHA1]
 gi|110822125|gb|ABG97409.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 237

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 16/169 (9%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+++  DL  G+V+T   +E V      + DG +       A+ ++DG  +  P   G+ 
Sbjct: 70  VVVAARDLQPGVVLTDADVELVDLEAGTLPDGAVT------ALADVDGRTLAGPTRAGEA 123

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167
           +   +++       ++ +    R   + ++   AV  +++  D VDV+ V   +   P  
Sbjct: 124 LTDVRVLGPRLAAAAAGM-DDARIVPVRLAD-PAVTELLREGDRVDVLTVDPDTPANPDR 181

Query: 168 T---VVL--SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
                VL    + V+        D+R        L L   +A  + AA 
Sbjct: 182 RSGATVLASRAVVVLVTPSENGRDQRE---RVVMLALPASEATTVAAAS 227


>gi|219883046|ref|YP_002478210.1| hypothetical protein Achl_4442 [Arthrobacter chlorophenolicus A6]
 gi|219862052|gb|ACL42393.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6]
          Length = 246

 Score = 59.1 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 24/208 (11%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVT--PNILEWVAFPEENVFDGFIDDVHQP 87
            +VQ  +      A  +N+ +    +            ++  + P   V  G + D    
Sbjct: 24  SYVQGADQRALKGAATMNIYVVDKSVPANTPAADLAKFVKPASVPASTVAAGAVTD---- 79

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL--SSLLPKGKRAATMDISISSAVGGM 145
             +  L G +   P+L G+ +   ++VD  +  +  ++ +P+G +  T+ +     VGG 
Sbjct: 80  --LGTLTGKVTSAPLLPGEQLLDGRMVDPASLLVPGTAPVPEGMQEITVQLGPDRVVGGQ 137

Query: 146 IKPNDHVDVVM--VRSLSERKPTVTVVLSNIRVIAI-DHNIDSDERVLVGST-------- 194
           +   D V V +        + PT  +    + V ++     +   +    +         
Sbjct: 138 LAAGDTVGVFVSFTEGAGPKGPTTHLAFQKVLVTSVQGAPAEPTGKAAATAPPGPPVPAG 197

Query: 195 ---ATLELTPMQAKALVAAQSVAKLSLV 219
               TL      A+ +V A     + L 
Sbjct: 198 AMLITLARPAADAERIVFAAEFGTIWLS 225


>gi|308178037|ref|YP_003917443.1| hypothetical protein AARI_22500 [Arthrobacter arilaitensis Re117]
 gi|307745500|emb|CBT76472.1| hypothetical protein AARI_22500 [Arthrobacter arilaitensis Re117]
          Length = 236

 Score = 58.8 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 18/184 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++   D+  G  +T N L       +        D     +++ + G    V +  G 
Sbjct: 63  EVVVVISDIPAGSQITSNQLAVQTVRLDP------QDDEVFESLEPVSGQRAAVALPAGT 116

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKP 165
            +R   LV      L +  P+G  A  + +S  + V  ++ P   VD+V+      E++ 
Sbjct: 117 VLRSYSLVGPQ---LLAGSPQGTVAVPLRLSDPATVT-LLHPGQLVDIVLTTGDGFEKQI 172

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGST-------ATLELTPMQAKALVAAQSVAKLSL 218
               +   + V+ +  N  + E  ++  T         +      +  L  A S  K+S 
Sbjct: 173 NSETIAKAVPVLWVPDNASTSEFGMLSGTRQSGEGIVVVAAASSLSDDLAGAVSRGKVSA 232

Query: 219 VLRS 222
           VL +
Sbjct: 233 VLVN 236


>gi|320532996|ref|ZP_08033744.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134787|gb|EFW26987.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 319

 Score = 58.4 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++    +    +    V+   P +   VL++   ++ G ++T   +     P  ++    
Sbjct: 58  LVVAVCLGTAVLVALSVLRPGPERGQQVLVASRAISAGALLTDQDVSTSTLPAGSLPQSP 117

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +       +  +  G    + + KG  +         +GG++  L   +R   + + +  
Sbjct: 118 LT------STGQAVGSRAAISLEKGTVLTAS----MTSGGMAQELGADERLVQVPVDV-- 165

Query: 141 AVGGMIKPNDHVDVV 155
               + +P   VDV+
Sbjct: 166 -GAELARPGARVDVI 179


>gi|306835635|ref|ZP_07468644.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49726]
 gi|304568479|gb|EFM44035.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49726]
          Length = 241

 Score = 58.4 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 32/210 (15%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   VL+   DL  G  ++   +     P  ++    + D     A  +L G ++  
Sbjct: 46  RAKELPQVLVFSHDLPAGAELSAADVSLERLPSSSIPSSALAD-----APSDLAGRIITA 100

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP------------ 148
              KG+ +  ++L+  G   +SSL+ +   A            G + P            
Sbjct: 101 AAGKGEVVTSQRLL--GQELVSSLVTESGSA-----DSKEGGSGRMIPVKLADPDIIPHL 153

Query: 149 --NDHVDVVMVRSLSERKP-TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAK 205
              D VD+V     ++ +P T  V+ S  RV+    +  + E  +  +T  L L    A 
Sbjct: 154 HHGDTVDIVTASDATDSEPATARVIASGARVV----STTTAEGEVSSATVLLALPNEHAN 209

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
            + AA     L++V+       P +  D+D
Sbjct: 210 DVAAASLNQPLTVVIVGDR-AQPQAPVDAD 238


>gi|218708106|ref|YP_002415727.1| hypothetical protein VS_0018 [Vibrio splendidus LGP32]
 gi|218321125|emb|CAV17075.1| Conserved hypothetical protein; putative exported protein, CpaB
           [Vibrio splendidus LGP32]
          Length = 262

 Score = 58.4 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 23/232 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++G+    +   + G++ + +     VQ EE I E       V         G  
Sbjct: 1   MNSKIILGLAFLAISIGLYGVVNVPM-DTFPVQPEEPIIEV---TFKVWKLTHPAVKGQQ 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  +       PE       +  + Q   +   D       I   + + L  L   G+  
Sbjct: 57  LKRSDFVIEYLPEARA---ALLGIDQNIELDWNDPQFAVHDIAAYELVDLNMLTSPGDSQ 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-----LSNI 174
            L +++  G     + +     +GG I   D VD+ ++ +  +   +   V     L+ +
Sbjct: 114 YLQAVIRPGFVPYNVTVPGRDVLGGTIAVGDLVDISVLSTPDQNLSSEDTVSDIQHLTMV 173

Query: 175 RVIAIDHNIDSDERVLVGSTATLE----------LTPMQAKALVAAQSVAKL 216
            ++A    +D        ST TLE          +T  Q   L  AQ +A++
Sbjct: 174 PLLAQIPVLDMVTSEKAVSTLTLEKETQVTLILQVTNQQLAQLTVAQRIAEV 225


>gi|308234323|ref|ZP_07665060.1| Flp pilus assembly protein CpaB [Atopobium vaginae DSM 15829]
          Length = 272

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 81/236 (34%), Gaps = 28/236 (11%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
           A  + S      ++ I       + ++++   L +G  +    +    +  +        
Sbjct: 25  AQSVRSDAQKARDDAIASYGGDVVRLVVTAHPLQIGDTIKAEDIVVRDWVSDLAPKDAYL 84

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142
           +        ++ G  V+V + +  P+      +  +     ++P G+ A ++ ++    +
Sbjct: 85  NS------DDVIGKEVKVAVGENVPLSTMHFTESDDE---LVIPNGRVALSLPMNERLGI 135

Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202
           G  I P   V             T  ++  ++  + +       +  +      L + P 
Sbjct: 136 GLHITPRTQV-----LGYDTTNKTTHLITKDMIALCV-KEAQPAQN-IPAQLV-LAVYPT 187

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258
               +++A +   L LV+              DV D++++ ++++      I +K 
Sbjct: 188 DVTRVLSAAATQSLRLVI-----------PAVDVQDLKDDSQQVESEHTKEISSKS 232


>gi|229819398|ref|YP_002880924.1| SAF domain protein [Beutenbergia cavernae DSM 12333]
 gi|229565311|gb|ACQ79162.1| SAF domain protein [Beutenbergia cavernae DSM 12333]
          Length = 207

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 13/188 (6%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       ++VL++  D+A    + P  +  VA P + V    +      +A  ++ G  
Sbjct: 28  LRPPDPPSVDVLVAAHDIAAAQEIVPADVRVVALPADAVPPDAL------DAADDVVGRQ 81

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           +   +  G P+    ++  G   L+   P+G     +  +       +++P   VD+V  
Sbjct: 82  LAHALPAGYPLGPGMVLGPG---LADGAPRGTTVVPVRFADPLLTS-VLEPGATVDLVAA 137

Query: 158 RSLSERKPTVTV---VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
                    +     VL+ +   A                  + + P  A  +V A +  
Sbjct: 138 GDQEAGAHVLATDAVVLARVDGEAGGGIGGLTSSAPDAPLLLVAVRPDVATLVVEASARG 197

Query: 215 KLSLVLRS 222
            L++VL  
Sbjct: 198 TLTVVLVP 205


>gi|54026930|ref|YP_121172.1| hypothetical protein nfa49560 [Nocardia farcinica IFM 10152]
 gi|54018438|dbj|BAD59808.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 221

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           A  I V+++  +L  G V+    L        ++  G + D         L G  +   +
Sbjct: 53  AARIPVVVAARELPPGTVLAAADLTVAPHEAGSLPAGAVRDPAV------LTGATLTAAM 106

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G+     ++V      +++      R   + ++  +AV  +++  D VDV+   +  +
Sbjct: 107 HPGEVFTDLRVVGPRLAEVAAS-TPDARIVPIRLAD-TAVAEILRAGDRVDVIGGETDDD 164

Query: 163 RKPT-VTVVLSNIRVIAIDHNIDSDERVLVG 192
                V  + ++  V+ +    +      V 
Sbjct: 165 SGTRPVRTLAADAAVVLVSEPTERGRAERVV 195


>gi|320533999|ref|ZP_08034557.1| SAF domain protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133787|gb|EFW26177.1| SAF domain protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 235

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 19/177 (10%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   +L +K  +  G V+    L   +   +      +  + + + + ++ G   RV I 
Sbjct: 68  QRAQMLAAKDTIKAGQVIDKEDLVSASVSSD------LTTLVRADQIDQVVGRTARVEIS 121

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           KG  +   +L      G         +   +  +      G ++P D VDVV + S +  
Sbjct: 122 KGQLLDTSQLATDPVPG------GDLQVVGVSANAGRFPAGGLQPGDKVDVVDIGSQN-- 173

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                V++S+ +V+A   +  + +    G+  ++ +    A  L +A +   ++++L
Sbjct: 174 -----VIVSDAQVLAAKPSSGTSDDWTSGAVISVLVDKKGAAKLASASANGTIAVIL 225


>gi|298345610|ref|YP_003718297.1| hypothetical protein HMPREF0573_10484 [Mobiluncus curtisii ATCC
           43063]
 gi|304390701|ref|ZP_07372654.1| SAF domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315657893|ref|ZP_07910773.1| SAF domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298235671|gb|ADI66803.1| hypothetical protein HMPREF0573_10484 [Mobiluncus curtisii ATCC
           43063]
 gi|304326457|gb|EFL93702.1| SAF domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491690|gb|EFU81301.1| SAF domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 198

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 82/214 (38%), Gaps = 32/214 (14%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           ++   A++A  +A+ L  P                  V++ K ++  G  +T   +   A
Sbjct: 13  LAAGLAILAVFVAVTLFLPEKAAAT------------VVVVKHEVCAGCEITAQDVRLSA 60

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
                V         +      + G    V +  G  ++   LV+     L +    G+ 
Sbjct: 61  LAPSAVPQDHFQKADR------VIGKTAAVSLTSGTVLQPALLVENAVEDLRT----GEV 110

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL 190
           A  +++S   AV G  K    V++       + +    ++ SN RV  +     S+  + 
Sbjct: 111 AFAIEVSD-PAVAGFSKTGQSVEIWCSGGNVDGQ----LLASNARV--VGVKAVSENFLG 163

Query: 191 VGSTAT---LELTPMQAKALVAAQSVAKLSLVLR 221
            G++A+   L     +A+ ++AA++   LS V+R
Sbjct: 164 TGNSASIAYLAAPEDEARRVIAAKTDHDLSFVVR 197


>gi|302521637|ref|ZP_07273979.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302430532|gb|EFL02348.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 166

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 16/163 (9%)

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           +  L G +    + KG  ++ + +V+R        L  G++   + I  ++ V G I P 
Sbjct: 9   LGALRGKIAVTTLHKGSLLQDDMIVNRPA------LRAGEQEIAIMIDAATGVAGKITPG 62

Query: 150 DHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELT 200
             V++          +K    +++   +V+ +           D+  R       T  L 
Sbjct: 63  SSVNIYATFKGQNENQKDESRLIVERAQVLDVGKLTPFDQNNDDNRNRSTEAVPITFGLG 122

Query: 201 PMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSDVWDVQEE 242
              A+ +  A+S A  + L L    +  P+++     + + ++
Sbjct: 123 TTDAQRVAYAESFATHVRLALVGAGEQPPAAAGPDRTYTLDKD 165


>gi|251795111|ref|YP_003009842.1| SAF domain protein [Paenibacillus sp. JDR-2]
 gi|247542737|gb|ACS99755.1| SAF domain protein [Paenibacillus sp. JDR-2]
          Length = 237

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 21/173 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R  GI +  + AL++G++   L     +Q          + + V+++K  +  G  
Sbjct: 1   MNRRRNAGIGL--LAALLSGVLVYGLFQLQKLQVTR------GETVEVIVAKQFVEAGRR 52

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   + +   P E      + D  Q   M+ +       P+   +PI   K+       
Sbjct: 53  LTEADIAYKRIPREGYEHEMLVDAKQAVGMETVI------PLGTNEPILGWKIDKY---- 102

Query: 121 LSSLLPKGK-RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS 172
              LLP G      +      ++   I+  D V V +       +     +++
Sbjct: 103 --HLLPTGLESTFQIPRDYVRSISNGIRAGDKVTVYLSGENEPSRRIFDSLVT 153


>gi|256374774|ref|YP_003098434.1| SAF domain protein [Actinosynnema mirum DSM 43827]
 gi|255919077|gb|ACU34588.1| SAF domain protein [Actinosynnema mirum DSM 43827]
          Length = 191

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 18/122 (14%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
                VL++  DL  G+ +    +  V  P     +G +       A +   G  +    
Sbjct: 25  PATTTVLVAARDLPPGVALAREDVRAVELPPGVAPEGVV-------AAEVAVGRALVSTA 77

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G+P+   +L        S           +     +   G+++    VDVV V  L  
Sbjct: 78  RAGEPLTDARLTGVDPEAAS---------VAVRFDPVT--AGLLRTGSRVDVVGVGRLGS 126

Query: 163 RK 164
             
Sbjct: 127 TG 128


>gi|328943875|ref|ZP_08241340.1| hypothetical protein HMPREF0091_10565 [Atopobium vaginae DSM 15829]
 gi|327491844|gb|EGF23618.1| hypothetical protein HMPREF0091_10565 [Atopobium vaginae DSM 15829]
          Length = 255

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 81/236 (34%), Gaps = 28/236 (11%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
           A  + S      ++ I       + ++++   L +G  +    +    +  +        
Sbjct: 8   AQSVRSDAQKARDDAIASYGGDVVRLVVTAHPLQIGDTIKAEDIVVRDWVSDLAPKDAYL 67

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142
           +        ++ G  V+V + +  P+      +  +     ++P G+ A ++ ++    +
Sbjct: 68  NS------DDVIGKEVKVAVGENVPLSTMHFTESDDE---LVIPNGRVALSLPMNERLGI 118

Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202
           G  I P   V             T  ++  ++  + +       +  +      L + P 
Sbjct: 119 GLHITPRTQV-----LGYDTTNKTTHLITKDMIALCV-KEAQPAQN-IPAQLV-LAVYPT 170

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258
               +++A +   L LV+              DV D++++ ++++      I +K 
Sbjct: 171 DVTRVLSAAATQSLRLVI-----------PAVDVQDLKDDSQQVESEHTKEISSKS 215


>gi|223982946|ref|ZP_03633158.1| hypothetical protein HOLDEFILI_00437 [Holdemania filiformis DSM
           12042]
 gi|223965107|gb|EEF69407.1| hypothetical protein HOLDEFILI_00437 [Holdemania filiformis DSM
           12042]
          Length = 266

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 20/217 (9%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
           E   +     + + ++   L  G V+    ++ +  P   V +G   D         L G
Sbjct: 35  ETTVQAAIDPVLIPVAARYLKSGTVIQREDIQMIEVPRPVVLEGVEKDPEL------LLG 88

Query: 96  VLVRV--PILKGDPIRLEKLVDRGN-GGLSSL-LPKGKRAATMDISISSAVGGMIKPNDH 151
             V     I +G       L+ +     +S+  L + + A T+D  I ++    I P   
Sbjct: 89  QAVDTYNAIAEGSLFYEALLIPKEELHDVSAFPLLENEAAVTIDADIKTSYANSILPGHQ 148

Query: 152 VDVVMVRSLSERKPTVTVVL-----SNIRVIAIDHNIDSD---ERVLVGSTATLELTPMQ 203
           +D+      ++   +   VL     S  RVIA+  +   +   +     S   + L    
Sbjct: 149 IDLYFQGYATQADESEKRVLYGQLVSQARVIAVRDSTGKNIDAQSDKATSVIVVALAYED 208

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
           A  +  A+    + L + +   LNP  S+  D +D+ 
Sbjct: 209 ADLVQRAKFFGTV-LPMVTYGSLNPE-SQAEDFYDIA 243


>gi|86147183|ref|ZP_01065499.1| hypothetical protein MED222_18941 [Vibrio sp. MED222]
 gi|85835067|gb|EAQ53209.1| hypothetical protein MED222_18941 [Vibrio sp. MED222]
          Length = 262

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 23/232 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++G+    +   + G++ + +     +Q EE I E       V         G  
Sbjct: 1   MNSKIILGLAFLAISIGLYGVVNVPM-DTFPIQPEEPIIEV---TFKVWKLTHPTVKGQQ 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  +       PE       +  + +   +           I   + +    L   G+  
Sbjct: 57  LKRSDFVIEYLPEARA---ALLGIDRNIELDWNAPQFAVHDIAAYELVDSNMLTSPGDSQ 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-----LSNI 174
            L +++  G     + +     +GG I   D VD+ ++ +  +   +   V     L+ +
Sbjct: 114 YLQAVIRPGFVPYNVTVPGRDVLGGTIAVGDLVDISVLSTPDQNLSSEDTVSDIQHLTMV 173

Query: 175 RVIAIDHNIDSDERVLVGSTATLE----------LTPMQAKALVAAQSVAKL 216
            ++A    +D        ST TLE          +T  Q   L  AQ +A++
Sbjct: 174 PLLAQIPVLDMVTSEKAVSTLTLEKETQVTLILQVTNQQLAQLTVAQRIAEV 225


>gi|326333348|ref|ZP_08199595.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium
           Broad-1]
 gi|325948992|gb|EGD41085.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium
           Broad-1]
          Length = 219

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 25/179 (13%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++A  L +            +P     + ++  DL VG V+T   L  +     +V    
Sbjct: 22  LLAFLLTASAVAIGFSATRPDPPDTSTMAVASRDLPVGTVLTAADLTDIETDPGSVPA-- 79

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK---RAATMDIS 137
                  +  +   G  +  P+ +G+P+   +LV          L +G     A  + + 
Sbjct: 80  -------DLAEAPLGERLAAPLRQGEPVTDVRLVGPE-------LTEGHPDLVAVPVRLP 125

Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGST 194
            +  + G++   D VD+      +     VT    +  ++++    +   D+    G T
Sbjct: 126 DAE-MAGLLHVGDTVDLYATDPATAETARVTT---DTLILSLPQATEPNRDDSSAQGKT 180


>gi|225017400|ref|ZP_03706592.1| hypothetical protein CLOSTMETH_01326 [Clostridium methylpentosum
           DSM 5476]
 gi|224949810|gb|EEG31019.1| hypothetical protein CLOSTMETH_01326 [Clostridium methylpentosum
           DSM 5476]
          Length = 290

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 86/270 (31%), Gaps = 52/270 (19%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   ++G V   +  LV   I     +    QTE            V +    +  G  +
Sbjct: 7   RNRTIIGAVCILLAVLVCFGITPLFNAGLKAQTEA-----------VRVKAEVIPRGTYI 55

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG----------DPIRLE 111
           T +++E        + D          ++ E+ G    V + K           +P+   
Sbjct: 56  TADMVEVYTRGASGMPDSIAT------SLDEVVGRYTDVELRKNTDVNTGWLSSEPLTQY 109

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170
           + + + +G         K A ++ I + +    G ++  D + ++        + T    
Sbjct: 110 EYLTKLDGS--------KVAISVTIPTFAKGGSGKVEAGDII-MLFATDKDTGETTQPPE 160

Query: 171 LSNIRVIAIDHNIDSDER-------------VLVGSTATLELTPMQAKALVAAQSVAKLS 217
           L  + V+A   +  +D+                + ST TL +   QA+ L   +    L 
Sbjct: 161 LKYVEVLAATQSSGADKEYQAPQEDEEENPEESLPSTITLLVNTEQAQILAHLEESNSLH 220

Query: 218 LVL--RSIADLNPSSSEDSDVWDVQEEGKE 245
           L    R   +         D + V+ E   
Sbjct: 221 LAFVYRGTRENAEKFLAAQDQFFVEPEEAT 250


>gi|283782738|ref|YP_003373492.1| hypothetical protein HMPREF0424_0231 [Gardnerella vaginalis 409-05]
 gi|283441123|gb|ADB13589.1| hypothetical protein HMPREF0424_0231 [Gardnerella vaginalis 409-05]
          Length = 284

 Score = 56.1 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 65/249 (26%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R    V   +  L AG++A+ +VS      E  +         + ++K ++  G  V+ 
Sbjct: 47  RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQETQV---------IAVAKHNIQKGSRVSV 97

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           N + +V  P+  VF+  + +    NA      ++    I KG PI    L          
Sbjct: 98  NDIAYVRVPKHKVFNQALSNNISANAS-----IIATCEIRKGMPILQTLLSKIP------ 146

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---------------SERKPTVT 168
            +P+G  + T+ +   ++    + P + +D+   + +               +E+  + T
Sbjct: 147 RIPEGFTSITIHL---ASADHTLLPGEKIDLAFSKPVQDEEISNSKNAESHNNEKSKSST 203

Query: 169 V-------------------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203
           +                         V+ N+ V+ I  +    +     +T TL +    
Sbjct: 204 IENNDKNKNQDIEENNIAEIDERYVSVVHNVTVMQITQSTQVSQNQQ--NTTTLAMPAAD 261

Query: 204 AKALVAAQS 212
           A  L+ AQS
Sbjct: 262 ALRLLQAQS 270


>gi|229827062|ref|ZP_04453131.1| hypothetical protein GCWU000182_02446 [Abiotrophia defectiva ATCC
           49176]
 gi|229788680|gb|EEP24794.1| hypothetical protein GCWU000182_02446 [Abiotrophia defectiva ATCC
           49176]
          Length = 278

 Score = 56.1 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 76/201 (37%), Gaps = 30/201 (14%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K   V+  K  +  G ++T + LE V      +    +       ++  + G   +    
Sbjct: 35  KQEEVVRVKEKITEGELITADKLETVNVGAYGLSPDVVK------SIDGITGKYAKTDFY 88

Query: 104 KGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL 160
           KG  I  E L D      + L  +P+ K A ++ I S ++ +   +   D V ++  +  
Sbjct: 89  KGSYITGEGLSDVALEEDTYLNDIPEDKYAISITIQSFAAGLSSKLLKGDIVTII-TKKG 147

Query: 161 SERKPTVTVV--LSNIRVIAIDHNIDSDERVLVGS---------------TATLELTPMQ 203
              +    +   L+ + V++     D +++   G                T TL +  +Q
Sbjct: 148 EGDEAVTEIPRELTYVEVLST-TEEDGEDKENNGKEVKKEDDTKAKKKLATITLLVNSLQ 206

Query: 204 AKALVAAQSVAKLSLVL--RS 222
           A+ L + ++   + + L  R+
Sbjct: 207 AEELASFENQRGIHVALKCRN 227


>gi|298253092|ref|ZP_06976884.1| hypothetical protein GV51_0271 [Gardnerella vaginalis 5-1]
 gi|297532487|gb|EFH71373.1| hypothetical protein GV51_0271 [Gardnerella vaginalis 5-1]
          Length = 284

 Score = 56.1 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 65/249 (26%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R    V   +  L AG++A+ +VS      E  +         + ++K ++  G  V+ 
Sbjct: 47  RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQETQV---------IAVAKHNIQQGSRVSV 97

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           N + +V  P+  VF+  + +    NA      ++    I KG PI    L          
Sbjct: 98  NDIAYVRVPKHKVFNQALSNNISANAS-----IIATCEIRKGMPILQTLLSKIP------ 146

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---------------SERKPTVT 168
            +P+G  + T+ +   ++    + P + +D+   + +               +E+  + T
Sbjct: 147 RIPEGFTSITIHL---ASADHTLLPGEKIDLAFSKPVQDEEISNSKNAESHNNEKSKSST 203

Query: 169 V-------------------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203
           +                         V+ N+ V+ I  +    +     +T TL +    
Sbjct: 204 IENNDKNKNQDIEENNIAEIDERYVSVVHNVTVMQITQSTQVSQNQQ--NTTTLAMPAAD 261

Query: 204 AKALVAAQS 212
           A  L+ AQS
Sbjct: 262 ALRLLQAQS 270


>gi|315654208|ref|ZP_07907116.1| SAF domain protein [Mobiluncus curtisii ATCC 51333]
 gi|315491243|gb|EFU80860.1| SAF domain protein [Mobiluncus curtisii ATCC 51333]
          Length = 198

 Score = 56.1 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 32/214 (14%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           ++   A++A  + + L  P                  V++ K ++  G  +T   ++  A
Sbjct: 13  LAAGLAILAVFVVVTLFLPEKAAAT------------VVVVKHEVCAGCEITAQNVKLSA 60

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
                V         +      + G    V +  G  ++   LV+     L +    G+ 
Sbjct: 61  LAPSAVPQNHFQKADR------VIGKTAAVSLTSGTVLQPALLVENAVEDLRT----GEV 110

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL 190
           A  +++S   AV G  K    V++      S       ++ SN RV  +     S+  + 
Sbjct: 111 AFAIEVSD-PAVAGFSKTGQSVEIW----CSGGNVDGELLASNARV--VGVKAVSENFLG 163

Query: 191 VGSTAT---LELTPMQAKALVAAQSVAKLSLVLR 221
            G++A+   L     +A+ ++AA++   LS V+R
Sbjct: 164 TGNSASIAYLAAPEDEARRVIAAKTDHDLSFVVR 197


>gi|253576048|ref|ZP_04853381.1| flp pilus assembly protein CpaB [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844623|gb|EES72638.1| flp pilus assembly protein CpaB [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 265

 Score = 56.1 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 24/168 (14%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            RL+ + V+ + A VA +I            +  I         V ++  +L     +  
Sbjct: 14  RRLLIVFVALILAGVAVVI------------QSSIVNKQVTTELVYVAADNLTPYS-LVE 60

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDG---VLVRVPILKGDPIRLEKLVDRGNG- 119
             L      +  V D  I D      ++EL+G   V   V I KG P+    L+      
Sbjct: 61  GKLVQRNVVKSEVPDDAIRD------LKELEGESWVTTEVGIPKGIPVSKSMLIPAKESK 114

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            G S  L  G     +      + G MIKP   VD  +     +R+P+
Sbjct: 115 FGESLELKDGAMFVGVKTDQVKSAGDMIKPGTIVDAYVYIKGQDRQPS 162


>gi|256826164|ref|YP_003150124.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547]
 gi|256689557|gb|ACV07359.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547]
          Length = 218

 Score = 56.1 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 28/192 (14%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
             P     VL++  ++A G  +T   L  +  PE               +++EL G  V 
Sbjct: 49  PAPPVTTEVLVADAEIAPGTTLTAEHLRTIELPEGAA-------AWDAGSVEELTGRTVT 101

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           +P+  GDP+    ++  G       +P G+    + +     +     P   V +V    
Sbjct: 102 IPLAPGDPVTPRSVLPAGE-----QIPGGRELIFLPVLDPPVLAA-AHPGSTVRLV---- 151

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA-----QSVA 214
               + T   +     V +    ID D    +G    LELTP Q+ A+ +A         
Sbjct: 152 ---DRTTGETLADRATVRSTAP-IDPDAVDSLGG-LWLELTPAQSDAVASAGVQTGSQEG 206

Query: 215 KLSLVL-RSIAD 225
            +++ L RS  +
Sbjct: 207 AVAVSLVRSPQE 218


>gi|332671590|ref|YP_004454598.1| SAF domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332340628|gb|AEE47211.1| SAF domain protein [Cellulomonas fimi ATCC 484]
          Length = 205

 Score = 55.7 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 23/165 (13%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
            V AL  GI A  ++          +   P +   V+++   L  G  +T + +  V  P
Sbjct: 9   VVTALGLGIAAAGVLG--------TLRPAPPETRPVVVAGLPLVAGTRLTADDVRVVDVP 60

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
                DG    V       E+    + V +  G P+    L   G  G     P G    
Sbjct: 61  TRLAADGAAARV------DEVLDRSLAVDLTPGSPLVPGVLAADGATG-----PPGTVVT 109

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           T+ ++  +    M++P   VDV+            TVV +   V+
Sbjct: 110 TVRLAD-TGAAAMLEPGRRVDVLAATPEGGP---ATVVAARALVL 150


>gi|167036494|ref|YP_001664072.1| SAF domain-containing protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114922|ref|YP_004185081.1| SAF domain-containing protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855328|gb|ABY93736.1| SAF domain [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928013|gb|ADV78698.1| SAF domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 180

 Score = 55.7 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 32/177 (18%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++R++ I +     + A + A  +          V  +N  K   V++ + D+  G V++
Sbjct: 1   MSRIIKIAL-----ITAVVFAAFMF---------VFMQNIQKTEKVVVVEKDIPAGTVIS 46

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + ++    P   V   +        ++ ++ G +V+   ++GD I +E L  +      
Sbjct: 47  QDAVKVTDVPASVVRPNY------AKSLADVIGKVVKEGRVQGDFIPVEILTSQDEK--- 97

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            LL  G    T+ I         ++  D V  ++      +      VL   +VI++
Sbjct: 98  -LLEAGHVIMTIQIDKVE--AKTLQSGDTVSFIVFDQTGSK------VLEGFKVISV 145


>gi|269796338|ref|YP_003315793.1| SAF domain-containing protein [Sanguibacter keddieii DSM 10542]
 gi|269098523|gb|ACZ22959.1| SAF domain-containing protein [Sanguibacter keddieii DSM 10542]
          Length = 261

 Score = 55.7 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++A  +V          ++  P     V+++   L  G  +T + L  V  P     +G 
Sbjct: 58  VVAALVVGLATTLVVHRLSPTPEPRDPVVVASTALPAGTTLTADHLRTVRLPSAVTPEGA 117

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
                 P+    + G  + VP+  G  +    LVD  + G     P G   A + +    
Sbjct: 118 ------PDDADTVVGRTLAVPVTTGTVLGDTLLVDDTSTG-----PPGTVVAAVRL-AEP 165

Query: 141 AVGGMIKPNDHVDVV 155
           A+  ++ P   VD++
Sbjct: 166 ALLAVLTPGTRVDLL 180


>gi|229818382|ref|ZP_04448663.1| hypothetical protein BIFANG_03684 [Bifidobacterium angulatum DSM
           20098]
 gi|229784252|gb|EEP20366.1| hypothetical protein BIFANG_03684 [Bifidobacterium angulatum DSM
           20098]
          Length = 221

 Score = 55.7 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 58/179 (32%), Gaps = 24/179 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              ++ +   +A G  +  + +  +  P   V    +          +  G + + PI  
Sbjct: 55  TDTIVTAATPIARGTTIRHDDVVMMTVPASPVTGKALHTT------DKAVGSIAQHPIEA 108

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-------MV 157
           G P+        G+ G +  +  G     + ++ S      + P D V +V         
Sbjct: 109 GQPLYA------GSVGKAPTITTGDTVLDIAVANSINA---LIPGDTVSLVSAVGCEPTS 159

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           +  +  +P    + S   ++  +     D      +  T+ L P  A  ++ A     +
Sbjct: 160 QEHNNEQPAACTLASQAMIM--ETKARQDGNSTERNLLTVALDPQSAIRVMKAGESGAI 216


>gi|297242988|ref|ZP_06926926.1| hypothetical protein GVAMD_1000 [Gardnerella vaginalis AMD]
 gi|296889199|gb|EFH27933.1| hypothetical protein GVAMD_1000 [Gardnerella vaginalis AMD]
          Length = 259

 Score = 55.3 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 87/249 (34%), Gaps = 65/249 (26%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R    V   +  L AG++A+ +VS      E  +         + ++K ++  G  V+ 
Sbjct: 22  RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQETQV---------IAVAKHNIQQGSRVSV 72

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           N + +V  P+  VF+  + +    NA      ++    I KG PI    L          
Sbjct: 73  NDIAYVRVPKHKVFNQALSNNISANAS-----IVATCEIRKGMPILQTLLSKIP------ 121

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----PTVTV---------- 169
            +PKG  + T+ +   ++    + P + +D+   + + + +        +          
Sbjct: 122 RIPKGFTSITIHL---ASADHTLLPGEKIDLAFSKPVQDEEISNSQNAEIHNSEKSKSNT 178

Query: 170 --------------------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203
                                     V+ N+ V+ I  +  + +     +T TL +    
Sbjct: 179 VTNNDKNKNHDIEENNIAEIDERYVSVVHNVMVMQITQSTQASQNQQ--NTTTLAMPAAD 236

Query: 204 AKALVAAQS 212
           A  L+ AQS
Sbjct: 237 ALRLLQAQS 245


>gi|258510582|ref|YP_003184016.1| SAF domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477308|gb|ACV57627.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 264

 Score = 55.3 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 22/198 (11%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A +AG+ A+ LV+   +     +  +        ++  DL VG  +    +     P   
Sbjct: 17  AWIAGLAALGLVTAFVMDR---VATHKVPMATAYVASHDLTVGETIGAKDVTRTVVPVST 73

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATM 134
           +  G +             G  V  P+ +G  +    L   G   G+  L     RA  +
Sbjct: 74  LPPGALTASP--------IGKTVTAPVYQGQVLVGGDLGHMGGVNGVMRLYGMQTRAYPL 125

Query: 135 DISISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIRVIAIDHNID------SDE 187
            +S  S     I     VDV+    S +       +V  N  VIA+    D      +D 
Sbjct: 126 TLSTQSVPMTDISVGQAVDVIAQMPSPNGAGNVTKLVAQNAPVIAVATAQDVILVGVTDS 185

Query: 188 RVLVGSTAT---LELTPM 202
             L  + AT   + L+P 
Sbjct: 186 EALQMANATKLYVALSPE 203


>gi|257793106|ref|YP_003186504.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479798|gb|ACV60115.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 272

 Score = 55.3 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 68/200 (34%), Gaps = 22/200 (11%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
             A +AG+ A+ LV+       + +  +        ++  DL VG V+ P  +     P 
Sbjct: 15  GAAWIAGLAALGLVTAF---VTDRVASHKVPMATAYVAAHDLTVGEVIGPKDVTRTVVPV 71

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAA 132
             +  G +             G  V  P+ +G  +    L   G   G+  L     RA 
Sbjct: 72  STLPPGALTASP--------IGKTVTAPVYQGQVLVGGDLGHMGGVDGVMRLYGMQTRAY 123

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAIDHNID------S 185
            + +S  S     I     VDV+              +V  N  VIA+    D      +
Sbjct: 124 PLTLSTQSVPLTDISVGQAVDVIAQMPSPYGAGNITKLVAQNAPVIAVATAQDVILVGVT 183

Query: 186 DERVLVGSTAT---LELTPM 202
           D   L  + AT   + L+P 
Sbjct: 184 DSEALQMANATKLYVALSPE 203


>gi|116671469|ref|YP_832402.1| hypothetical protein Arth_2923 [Arthrobacter sp. FB24]
 gi|116611578|gb|ABK04302.1| hypothetical protein Arth_2923 [Arthrobacter sp. FB24]
          Length = 256

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 34/218 (15%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQP 87
           ++ Q  +   +   + + VL+ +  +  G  V+     ++  + P   V    +      
Sbjct: 24  NYAQAADSRAQQGLEPVEVLVVQKAVTAGTPVSKLSESVKLTSIPGTAVPADAVK----- 78

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISISSAVGGM 145
            ++ +    +  V +  G+ +   +LVD           +P G    ++ +     +GG 
Sbjct: 79  -SLSDFSDKVTAVDLQPGEQLLKARLVDPNALAAPGTVPVPAGMEEISVLLEPQRVIGGR 137

Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNI------------RVIAIDHNIDSDERVLVGS 193
           +   D V V +   + ++      V ++I            +V+         E     S
Sbjct: 138 LAAGDTVGVYISYKMDDKAGADAPVSNDIKGFKEFTGKAFHKVLVTSVQQAPPETTKDAS 197

Query: 194 T------------ATLELTPMQAKALVAAQSVAKLSLV 219
           +             TL    + A  +V      K+ L 
Sbjct: 198 SADGPALPSGSVYVTLAREDVDAAEIVFGAEFGKIWLS 235


>gi|170724969|ref|YP_001758995.1| hypothetical protein Swoo_0604 [Shewanella woodyi ATCC 51908]
 gi|169810316|gb|ACA84900.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908]
          Length = 279

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 85/239 (35%), Gaps = 30/239 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M  ++L+ I+           +A +L+S     T+ V  +  AK   +  +K  L  G  
Sbjct: 1   MLNSKLIFIIAFIAVLTGLYGVADKLLSTSESVTQPVSDDGIAKTFTLWQTKSSLNKGEH 60

Query: 61  VTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118
           ++   L+ V    + ++  G   DV      Q L    +   +  G  +  E+L   G +
Sbjct: 61  LSLADLKRVQLGRDESLALGVNADVELNLDPQSL----LNSSVEAGQYLFPEQLSHPGES 116

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------ 166
           G L+ +  +G     + ++  + +   I P D +D++ V S                   
Sbjct: 117 GYLNLITREGMTLYPLTVATRNMIQDYILPGDEIDIMTVSSPQHNLANDMSRLDDFIGLR 176

Query: 167 VTVVLSNIRVIAIDH------------NIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
            ++++  +RVI++              +          +   +E+ P     L  AQ  
Sbjct: 177 ASMLMKRVRVISVADSDTDSQSQSSKISPSMKSSDKSQTRIVIEVDPEDLPRLTLAQRT 235


>gi|296130407|ref|YP_003637657.1| Flp pilus assembly protein CpaB [Cellulomonas flavigena DSM 20109]
 gi|296022222|gb|ADG75458.1| Flp pilus assembly protein CpaB [Cellulomonas flavigena DSM 20109]
          Length = 241

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 24/184 (13%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +         V     D      +    L     P   +             + EL G  
Sbjct: 33  VASQVGSLRTVYRLADDTPAFAELQEGDLVADEVPARWLSPSA------EVTLDELVGRK 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           V   +L G  +  + LV   +      L   +R   + ++  + V   ++P D VD+  V
Sbjct: 87  VATNLLAGTMVTSDLLVPPSD------LSTTEREIAISVNQVTGVADRVRPGDRVDIYAV 140

Query: 158 ---------RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
                    +     +    V +   +V+ +D +  S  + +V    TL L P  A A+ 
Sbjct: 141 FADVPGLAKQVRVLVRDVRVVSVRGSQVV-LDESAASGTQSVVP--VTLALEPDDALAVT 197

Query: 209 AAQS 212
            A +
Sbjct: 198 YAAA 201


>gi|20808475|ref|NP_623646.1| hypothetical protein TTE2077 [Thermoanaerobacter tengcongensis MB4]
 gi|20517094|gb|AAM25250.1| hypothetical protein TTE2077 [Thermoanaerobacter tengcongensis MB4]
          Length = 187

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 18/164 (10%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
            +NV+ +   +  G V+T ++L   + P                  QE+ G  +    +K
Sbjct: 29  TVNVVAAAKPINAGTVITQDMLTTKSIPASLA-------ADLVKNPQEIVGKSLNTSRVK 81

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           GD I    ++ +G       +  G    ++++        +I   D + +V++ +++   
Sbjct: 82  GDFIPHSIVMQKG-----LEVAPGDVLISINVPYED--AKLISVGDTISLVLLSNIAGGA 134

Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
                 +S ++V +I+    +    +      LE TP +A  + 
Sbjct: 135 NQT---VSGLKVYSIEQTTSAVNGTVSTIAV-LETTPDKASLIA 174


>gi|325067747|ref|ZP_08126420.1| hypothetical protein AoriK_07996 [Actinomyces oris K20]
          Length = 250

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 13/120 (10%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
            V+   P +   VL++   ++ G V+T   +     P   +    +       +  +  G
Sbjct: 4   SVLRPGPERGQQVLVASRSISAGAVLTEQDVSISNLPAGALPQSPLT------SAGQAVG 57

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
               + + KG  +         +G L+  L   +R   + + +      + +P   VD++
Sbjct: 58  SRAAISLEKGTVLTAS----MTSGYLAQQLGDDERLVQVPVDV---GAELARPGARVDII 110


>gi|229495106|ref|ZP_04388852.1| SAF domain protein [Rhodococcus erythropolis SK121]
 gi|229318037|gb|EEN83912.1| SAF domain protein [Rhodococcus erythropolis SK121]
          Length = 234

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +     + V++S  DL  G V+  + +E      + + +G + D         + G  V 
Sbjct: 49  DPATDTVAVVVSSRDLTPGQVIADSDVEIREIDSKQLPEGVVSDTDL------VVGRTVA 102

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            PI  G+ +   ++++R   GLS +     R   + ++ + AV  +++  D VDV+ V  
Sbjct: 103 GPIRSGETVTDVRVLNRRLAGLS-VGTDDARIVPVRLADA-AVAEILRSGDVVDVLTVGP 160

Query: 160 LSERKPT 166
            + R  T
Sbjct: 161 DTSRPDT 167


>gi|310288050|ref|YP_003939309.1| hypothetical protein BBIF_1530 [Bifidobacterium bifidum S17]
 gi|309251987|gb|ADO53735.1| conserved hypothetical protein [Bifidobacterium bifidum S17]
          Length = 219

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V+++   +  G  +    +E    P   V DG+       +A  +  G + +  I  
Sbjct: 50  TQPVVVAARLIPRGARIGAEDVEIRQMP---VSDGW---DTALDAANQAAGGIAQTDIAA 103

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--------- 155
           G P+    +  R           G+    + +   +     I   D +D+V         
Sbjct: 104 GQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGTPCDAST 154

Query: 156 -MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
               S  E     + VL+     A   +   D+ +  G+  T  LTP +A +++ AQ + 
Sbjct: 155 GTTSSRDESAGGRSCVLARS---ATAMDAAHDDAMTGGTLITFALTPDEAISIINAQELG 211

Query: 215 KL 216
            +
Sbjct: 212 PI 213


>gi|307721766|ref|YP_003892906.1| SAF domain-containing protein [Sulfurimonas autotrophica DSM 16294]
 gi|306979859|gb|ADN09894.1| SAF domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 292

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 82/219 (37%), Gaps = 35/219 (15%)

Query: 13  GVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
            +  ++AG++     V+      +    E     I V ++  +L  G ++    ++    
Sbjct: 8   IIMGIMAGLVLFSSSVALLLYLKQSKHKETAQNNIEVFVAAKNLKKGDLLDAGSIKKAKL 67

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL------------VDRGNG 119
           P+  +          P    E+     RV I K +PIRLEK+            V +   
Sbjct: 68  PKSYIS-------FTPLTDSEIISHYARVNIYKDEPIRLEKISALKPVEKIKQTVKKSET 120

Query: 120 GLSSLLPKGKRA----ATMDISISSAVGGMIKPNDHVDV--VMVRSLSERKPTVTVVLSN 173
            + + L K ++      ++ +S+      +++  D+VD+  V+  S          +  +
Sbjct: 121 KVQTTLNKVQQVTEDTLSVSLSVFKNKNTLLRGGDYVDIASVIPSSTKTDNFNTRYIALH 180

Query: 174 IRV---------IAIDHNIDSDERVLVGSTATLELTPMQ 203
           +++         ++   + ++ ++++   T    ++P  
Sbjct: 181 VKINNFVSNGKTLSTPISYNAKKQIIRADTIVFLMSPKD 219


>gi|308235642|ref|ZP_07666379.1| hypothetical protein GvagA14_05378 [Gardnerella vaginalis ATCC
           14018]
 gi|311115187|ref|YP_003986408.1| hypothetical protein HMPREF0421_21303 [Gardnerella vaginalis ATCC
           14019]
 gi|310946681|gb|ADP39385.1| hypothetical protein HMPREF0421_21303 [Gardnerella vaginalis ATCC
           14019]
          Length = 223

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 67/172 (38%), Gaps = 27/172 (15%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L+   ++  F  VA +IA+ +++               +   + ++  D++ G ++
Sbjct: 29  RQKALLLNALTIFFISVATLIAINMITSCQ------------ETQIIPVAIRDISKGTLI 76

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L +V  P+ +VF+  I+     NA+      +    I  G PI   ++  +     
Sbjct: 77  KQDDLSYVNVPKNSVFNHVINKDLIKNAI------IATCNIKYGMPIFTSQITQQ----- 125

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
            + +P G    ++ ++ ++     +   +++ +   +          +V  N
Sbjct: 126 -AKIPPGFTTISIKLASNNQD---LNIGENISIAFSKVSRGDHNENDIVQEN 173


>gi|119714038|ref|YP_919180.1| SAF domain-containing protein [Nocardioides sp. JS614]
 gi|119525947|gb|ABL79317.1| SAF domain [Nocardioides sp. JS614]
          Length = 259

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 24/245 (9%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K  R  G ++  V  ++A +IA   +  +    EE           VL+    +  G  +
Sbjct: 36  KAPRKYGQMLMSVLVVIAAVIAGGWLYVNKGGVEE-----------VLVVAQPIPAGHPI 84

Query: 62  TPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           T + +     P   +     ID     + +  + G    V +L G  +  + L       
Sbjct: 85  TEDDVRTSKDPLLVSRSVSGIDGAILVSDVDSVFGQRTTVALLPGQVLTQDSLT------ 138

Query: 121 LSSLLP-KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            S LLP +GKR   +++  +  V   + P   VD + V    +        L +  VI+ 
Sbjct: 139 -SDLLPQEGKRLIAVNL-PAGRVPDTLAPGSVVDAIAVPQEGQSGDPKA--LDDPVVISA 194

Query: 180 DHNIDSDERVLVGS-TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
              + S ++   G+   T+ +    AK + A  +V +L+L+   I + +P+ S   D   
Sbjct: 195 GATVYSSKQSQDGTVVVTILIAETDAKTVAAYGAVGQLTLLQAPITEGDPADSAPQDDSA 254

Query: 239 VQEEG 243
              +G
Sbjct: 255 TGGQG 259


>gi|311064926|ref|YP_003971652.1| hypothetical protein BBPR_1589 [Bifidobacterium bifidum PRL2010]
 gi|313140839|ref|ZP_07803032.1| cation transport ATPase [Bifidobacterium bifidum NCIMB 41171]
 gi|310867246|gb|ADP36615.1| Conserved hypothetical protein [Bifidobacterium bifidum PRL2010]
 gi|313133349|gb|EFR50966.1| cation transport ATPase [Bifidobacterium bifidum NCIMB 41171]
          Length = 219

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V+++   +  G  +    +E    P   V DG+       +A  +  G + +  I  
Sbjct: 50  TQPVVVAARLIPRGARIGAEDVEIRQMP---VSDGW---DTALDAANQAAGGIAQTDIAA 103

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--------- 155
           G P+    +  R           G+    + +   +     I   D +D+V         
Sbjct: 104 GQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGTPCDASA 154

Query: 156 -MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
               S  E     + VL+     A   +   D+ +  G+  T  LTP +A +++ AQ + 
Sbjct: 155 GTTSSRDESAGGRSCVLARS---ATAMDAAHDDAMTGGTLITFALTPDEAISIINAQELG 211

Query: 215 KL 216
            +
Sbjct: 212 PI 213


>gi|83589197|ref|YP_429206.1| hypothetical protein Moth_0329 [Moorella thermoacetica ATCC 39073]
 gi|83572111|gb|ABC18663.1| hypothetical protein Moth_0329 [Moorella thermoacetica ATCC 39073]
          Length = 212

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 39/231 (16%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++R +GIV+S + AL+    A  L + +             K + V+ +   +  G  +T
Sbjct: 1   MSRKVGIVISLILALI--FTAAILAAGNGKY------RQATKTVEVVKAVRFIPAGERIT 52

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + +  V  PE                 ++L+G   +V +LK   +  +       G L+
Sbjct: 53  ADSITTVRVPESMAS-------GLATNPKDLEGKEAKVSLLKDQFVWKD-----AAGELA 100

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRVIAI- 179
           +    G     + +    A  G + P + V++ +    +    +     +  N+ V  + 
Sbjct: 101 A--GPGMVEVVLPVD--LAASGAVWPGERVNIHIAVKNNNPGSSAPSPKICENVLVTKVL 156

Query: 180 ---DHNIDSDERVLVGST-------ATLELTPMQAK-ALVAAQSVAKLSLV 219
                 I+  +   +  T         +E+ P   +  LV A +   + LV
Sbjct: 157 GQDGVEIEPGKTTGLNPTTNKVPVAVGVEV-PKDVEDVLVQAAANKTVYLV 206


>gi|218290612|ref|ZP_03494714.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239396|gb|EED06593.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 267

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 13/164 (7%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           +AG+  + LV+   +   E +  +        ++  DL VG V+ P  +     P   + 
Sbjct: 20  IAGLAVLGLVTAFVI---ERVATHKVPMAMAFVAAHDLTVGEVIGPKDVTRTKVPVATLP 76

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136
            G +             G +V  P+ +G  +    L   G   G+  L     RA  + +
Sbjct: 77  PGAMTVSP--------VGKMVTSPVYQGQVLVGGDLGRMGGVNGVMRLYGTQTRAYPLTL 128

Query: 137 SISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIRVIAI 179
           S  S     +     VDV+    S +       +V  +  ++A+
Sbjct: 129 STQSVPMNDVSVGQAVDVIAQMPSPNGAGNVTKLVAQDAPILAV 172


>gi|302530357|ref|ZP_07282699.1| predicted protein [Streptomyces sp. AA4]
 gi|302439252|gb|EFL11068.1| predicted protein [Streptomyces sp. AA4]
          Length = 216

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 17/189 (8%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
             +   A   + ++S  DL  G V+    +  VA P+     G +      +A+    G 
Sbjct: 41  PPSARGAPATSTVVSARDLPAGSVLRAADVRTVALPDSLRPSGAL------SAIDAAVGR 94

Query: 97  LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           L+      G+PI   +L+      L            + ++ + AV  +++P   VDVV 
Sbjct: 95  LLSGAARAGEPITDVRLLGN---NLPVTGEPDAVTVAVRLADA-AVAELLQPGQRVDVV- 149

Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQS 212
             + ++   + +V+     V+ +  + D+  R       G    L L    A  + A+  
Sbjct: 150 --AGADTTNSASVLARGASVVTVRRSDDAGNRTLGPPQKGPLVLLALPREVATQVAASSL 207

Query: 213 VAKLSLVLR 221
              +++ LR
Sbjct: 208 ERPVTVTLR 216


>gi|224283683|ref|ZP_03647005.1| hypothetical protein BbifN4_07627 [Bifidobacterium bifidum NCIMB
           41171]
          Length = 213

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V+++   +  G  +    +E    P   V DG+       +A  +  G + +  I  
Sbjct: 44  TQPVVVAARLIPRGARIGAEDVEIRQMP---VSDGW---DTALDAANQAAGGIAQTDIAA 97

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--------- 155
           G P+    +  R           G+    + +   +     I   D +D+V         
Sbjct: 98  GQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGTPCDASA 148

Query: 156 -MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
               S  E     + VL+     A   +   D+ +  G+  T  LTP +A +++ AQ + 
Sbjct: 149 GTTSSRDESAGGRSCVLARS---ATAMDAAHDDAMTGGTLITFALTPDEAISIINAQELG 205

Query: 215 KL 216
            +
Sbjct: 206 PI 207


>gi|183984494|ref|YP_001852785.1| hypothetical protein MMAR_4524 [Mycobacterium marinum M]
 gi|183177820|gb|ACC42930.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
          Length = 219

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                    V+++  DL+ G  +T   +         + DG   DV        L G  +
Sbjct: 47  PSPDTNLSEVVVAARDLSPGTPLTTADVRLEMRSAATLPDGSQTDV------GALVGATL 100

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
             P  +G+ +   +++  G+    S    G R   + ++  SA+  +I+  D VDV+   
Sbjct: 101 ASPTRRGEVLTDVRIL--GSRLAESTAGPGARVVPLHLAD-SALIDLIRVGDVVDVLAAP 157

Query: 159 SLSERK-PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
             ++   P   VV ++  V+ +  +   + +        + L    A  +  +     L+
Sbjct: 158 PTTQPSPPAAKVVATDAVVVLV--SAKQELQTHADRVVLVALPARLANMVAGSALGQTLT 215

Query: 218 LVL 220
           L L
Sbjct: 216 LTL 218


>gi|291529651|emb|CBK95237.1| SAF domain [Eubacterium rectale M104/1]
          Length = 273

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 90/244 (36%), Gaps = 34/244 (13%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI----LE 67
           S   ALVA ++A+  +    +   E          +V+I+  D+  G ++T +      +
Sbjct: 20  SLTKALVAILVAI--IGWTGLTFVESYILTDKNVTSVVIASADIPQGTIITKDNAENYFK 77

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-----LS 122
                 + V    + D+      + ++G  +   +  G+ +  ++  +  +       +S
Sbjct: 78  KENVNSDLVTKSTVTDI------KSIEGKFL-TNVAAGEIVTSDRYYETKDTRDLKNPVS 130

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI-AIDH 181
                G        S  ++V G I+  D VD+      +    T  +   N+ +  A D 
Sbjct: 131 LTFAAG--------SAENSVNGTIRGGDIVDIY-TSVTTNDVVTYQLARENVYIENAYDS 181

Query: 182 N---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           +   IDS ++  V ST  ++L    A     A S   L +V     D+N   +    +  
Sbjct: 182 SYVKIDSADQATVASTFLVKLDEDDAANFKNAISQGDLLMV---KKDINQKDTASVIIPA 238

Query: 239 VQEE 242
             E+
Sbjct: 239 KTEK 242


>gi|134298671|ref|YP_001112167.1| hypothetical protein Dred_0804 [Desulfotomaculum reducens MI-1]
 gi|134051371|gb|ABO49342.1| hypothetical protein Dred_0804 [Desulfotomaculum reducens MI-1]
          Length = 199

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 34/215 (15%)

Query: 1   MKLTRL-MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK+ +  +  V+  VFA+V  I      +               K + V  +  DL    
Sbjct: 1   MKIKKHNIFYVLFVVFAVVTAIGVFHGYNTV------------TKKVPVAKAGADLVQDE 48

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           + +   L     P   +    +          E+ G+  +  I  G  +R    +   + 
Sbjct: 49  MASSKNLVIGQTPIGALQKDTVRHP------DEIKGMYAKGFIPAGTVLRKSMFISFKDA 102

Query: 120 GLSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           G+++ L    GK A ++   I ++VGG +K    V++      SER+     +     V+
Sbjct: 103 GVAARLANYPGKIAVSLGADIYTSVGGELKREYKVNIKSGYKGSEREIAKEAI-----VL 157

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
                    E         L +TP ++  L +A+S
Sbjct: 158 --------SEPTAKKEAIVLAMTPEESTLLTSARS 184


>gi|289642191|ref|ZP_06474342.1| SAF domain protein [Frankia symbiont of Datisca glomerata]
 gi|289508037|gb|EFD28985.1| SAF domain protein [Frankia symbiont of Datisca glomerata]
          Length = 275

 Score = 53.7 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             V+++  DLA G  +    +  V+ P + V  G +       + Q+  G  +   + +G
Sbjct: 53  TPVVVAAADLAGGATMAATDVRMVSLPTDVVPVGAVR------SPQDAVGRTLTAAVRQG 106

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           +PI   +++  G          G  AA + I+ + +V   ++  DHV+V+
Sbjct: 107 EPITDARVLGPGLITRRQA-AAGLVAAPVRITDAGSVL-FLRVGDHVNVL 154


>gi|196048041|ref|ZP_03115219.1| hypothetical secreted protein [Bacillus cereus 03BB108]
 gi|196021297|gb|EDX60026.1| hypothetical secreted protein [Bacillus cereus 03BB108]
          Length = 276

 Score = 53.4 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
           + TE+  K +  +++K D+A    +T +++    FP   +              +++ G 
Sbjct: 1   MQTESKVKPVKAIVTKQDIAPHTKITEDMILEKEFPMSGIPP------KSALKKEDVVGK 54

Query: 97  LVR--VPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
             +    I K   + + K+         G +S  L  G+ A  + + + ++ G  I PN 
Sbjct: 55  WTKDGYGIAKNSYMNVSKIAKQEELPDAGVIS--LKPGEYAFPVLVDLETSNGNAIVPNT 112

Query: 151 HVDVVMVRSLSERK 164
           +VD+    +L   K
Sbjct: 113 YVDLYFATNLEAEK 126


>gi|326383759|ref|ZP_08205444.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326197523|gb|EGD54712.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 182

 Score = 53.4 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           M L+         V +        VL +  DL  G V+T + L  V  P   V    + D
Sbjct: 1   MALLLVIAATASVVYSHRRPDAPRVLTAAADLRPGTVLTADDLTSVPMPAATVPASALRD 60

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS-SAV 142
             +        G  +  P+ +G+ I   +L+      L++ L     A  + +  +  +V
Sbjct: 61  TGKA------VGQRLTGPVTRGEIITETRLL---TSRLAAQLTGSSTARLVPVRPADESV 111

Query: 143 GGMIKPNDHVDVV 155
             +++  D VDV+
Sbjct: 112 ATLVRQGDTVDVL 124


>gi|329945240|ref|ZP_08293071.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529283|gb|EGF56204.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 261

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 41/120 (34%), Gaps = 13/120 (10%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
            V+   P +   VL++   ++ G ++T   +     P  ++    +       + +++ G
Sbjct: 15  SVLRPGPEQGRQVLVAARQVSAGTLITEQDVTTSRLPASSLPQSGL------ASSEQVVG 68

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
               + +  G  +             +  L   +R   + + +      +  P   VDV+
Sbjct: 69  TRAAITLEPGTVLTSSMTSGHE----AEQLGPDERLVQVPVDV---GAELAHPGTRVDVI 121


>gi|169628178|ref|YP_001701827.1| hypothetical protein MAB_1083c [Mycobacterium abscessus ATCC 19977]
 gi|169240145|emb|CAM61173.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 224

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           + + +  L A ++A R              +       V+++  DL+ G +++ + +   
Sbjct: 31  IAAAILVLFAALLAFR-------------PDPADDRAEVVVAARDLSPGTILSSDDVRLE 77

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
                 + DG   +         L G  +  P+ +G+ +   +++       ++   K  
Sbjct: 78  KRSTTILPDGVRTESAT------LFGATLAGPVRRGEMLTDVRVLGPRLAESAA--GKDA 129

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIRVIAIDHNIDS 185
           R   + ++ ++ V  MI+  D VD++ V           P    VL++  V+ +     +
Sbjct: 130 RIVPVPLADAATVD-MIRTGDVVDILTVAGHEPGAARDTPAEPTVLASGAVVVLVSPKPA 188

Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            + V       + L P QA  + A   V  ++L  R
Sbjct: 189 AKGVGTERVVMVALPPQQANRVAAIALVQAVTLTFR 224


>gi|258654757|ref|YP_003203913.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233]
 gi|258557982|gb|ACV80924.1| SAF domain protein [Nakamurella multipartita DSM 44233]
          Length = 219

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             VL+   DL +G V+    +   A       DG + D         + G ++     +G
Sbjct: 64  TPVLVLTRDLPIGAVLLATDVTTTAVLRP--PDGALTDPGP------VAGRVLSGAARRG 115

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           + +   +LVD            G+ A  +  + ++ V  +++P  HV VV V    +   
Sbjct: 116 EVLTDVRLVDPIGPAP----GPGRVAVPIRPADAT-VIDLLRPGMHVAVVAV---DDAGG 167

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
              +V   + ++  D     DE+  V     L +    A  +VAA     L+L
Sbjct: 168 ATALVADAVVLLVGDATARRDEQAPVV----LAVPQDSADQVVAAALTGTLAL 216


>gi|152967638|ref|YP_001363422.1| SAF domain protein [Kineococcus radiotolerans SRS30216]
 gi|151362155|gb|ABS05158.1| SAF domain protein [Kineococcus radiotolerans SRS30216]
          Length = 224

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 23/150 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  DL VG V+ P  +  V  P E + DG +D          L G ++  P+ +G+ +
Sbjct: 56  LVAVRDLPVGAVLGPGDVREVQRPGETLPDGLLDRT-------RLTGAVLAGPVRRGEVL 108

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS--LSERKPT 166
              +     +  + +  P G  A T+D+   + + G + P  HVDV+      L+     
Sbjct: 109 TDAR---AADASVLTGQPAGTLAVTVDVGDPAVLAG-LGPGVHVDVLARTEDPLTGAATG 164

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTAT 196
              + +++ V+          RV    TAT
Sbjct: 165 AERIATDVVVL----------RVPPARTAT 184


>gi|260904284|ref|ZP_05912606.1| SAF domain-containing protein [Brevibacterium linens BL2]
          Length = 209

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 22/174 (12%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +         ++++  +L  G  +    L  V FP   V D     V   +  +   G  
Sbjct: 41  VLTPDPGGTPIVVANRNLPPGSQLRTQDLTLVEFPARLVPDKAFTSVSDADHKRTSAG-- 98

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVM 156
               + KG P+    ++D+        LP G     M +     A   +++P   + +  
Sbjct: 99  ----LSKGSPLTQSAVLDQ------QALPDGSTDLLMPVRLADDASAALLQPGQRIRLFS 148

Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALV 208
                     V  V        I   +D  E      G   ++ L+   A  + 
Sbjct: 149 SLPDGGSDIVVKEV-------TIARLVDKGEGISAESGQLVSVILSSGDAARIA 195


>gi|213966094|ref|ZP_03394282.1| SAF domain protein [Corynebacterium amycolatum SK46]
 gi|213951292|gb|EEB62686.1| SAF domain protein [Corynebacterium amycolatum SK46]
          Length = 205

 Score = 52.6 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 37/222 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           ++ T +  IV   VF    G+ A+  ++P    T             V+IS   +A G  
Sbjct: 16  LRPTTIRRIVALTVFLCAVGLAAVESLTPRSGHT------------RVVISAKSIAAGAS 63

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119
           V    + +   P + V  G + D+        + G  +   +  G+    +++V      
Sbjct: 64  VAEQDVAFKDIPRDLVPGGAVTDIA------AVRGRTLATGMSPGEIFTEQRMVGPSLAK 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+        A T+  S   +    +   D VD+V     ++ +     +    RV+  
Sbjct: 118 SLTGTSESKIIAITLTDSGIVSA---LHTGDSVDIVST---ADERGMAAPIAHGARVV-- 169

Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVL 220
                     +V     L   P  A  +VAA S+A  L+L+L
Sbjct: 170 ---------NIVDDEVVLVALPAGAAEVVAATSLASPLTLLL 202


>gi|134298817|ref|YP_001112313.1| hypothetical protein Dred_0953 [Desulfotomaculum reducens MI-1]
 gi|134051517|gb|ABO49488.1| hypothetical protein Dred_0953 [Desulfotomaculum reducens MI-1]
          Length = 232

 Score = 52.2 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 23/158 (14%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++ +  V+    + +     N  + I++ +    +  G V+TP  +    F +       
Sbjct: 19  MLIVIAVTIPATKYQREWVANNQETISLPVPAHVIYAGHVITPGDITIRKFLKAAQEPTS 78

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI-S 139
           I D        E+ G +    +   + IR +KLV   N     +L  G+   ++      
Sbjct: 79  IQDT------TEITGRVAASDLYPMEQIRADKLVPPEN-----ILNTGEAYVSIKADSLE 127

Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
             +GG I+PN  VDV  V             L N  V+
Sbjct: 128 QILGGQIQPNMQVDVYHVVD-----------LENAPVL 154


>gi|84498693|ref|ZP_00997446.1| hypothetical protein JNB_16856 [Janibacter sp. HTCC2649]
 gi|84381030|gb|EAP96917.1| hypothetical protein JNB_16856 [Janibacter sp. HTCC2649]
          Length = 191

 Score = 52.2 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
              P    + L++  DL  G V+T + L       E+   G +  V +   +++L G L+
Sbjct: 12  RPPPPPTTSALVAARDLPSGAVLTADDLRTTQIRGESDSPGTVGAVGR---VRDLVGRLL 68

Query: 99  RVPILKGDPIRLEKLVDRGNG 119
             P+  G+ +   +LV R   
Sbjct: 69  TSPVAAGELVTTSRLVPRTAA 89


>gi|145222484|ref|YP_001133162.1| SAF domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|315442930|ref|YP_004075809.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium sp.
           Spyr1]
 gi|145214970|gb|ABP44374.1| SAF domain [Mycobacterium gilvum PYR-GCK]
 gi|315261233|gb|ADT97974.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium sp.
           Spyr1]
          Length = 217

 Score = 52.2 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 70/174 (40%), Gaps = 11/174 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  DLA G+ +T   +   +     + DG + DV       E+    +  P  +G+
Sbjct: 54  EVVVTVRDLAPGVALTAADVRVESRAAPLLPDGALTDV------DEVVDATLAGPARQGE 107

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +   +L+       ++      R   + ++ ++ V  +++P D VD+  V + ++    
Sbjct: 108 VLTDVRLLGPRLARSAA--GPDARIVPIPLADAALVD-LVRPGDVVDI--VAAPADDAVA 162

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
              V ++  V+ +    +       G    + L    A+ +  A  V  ++L L
Sbjct: 163 ARTVATDAIVVLVSAAENGIGARAGGRVVLVALPAAGAERVAGAALVEAITLTL 216


>gi|325518464|gb|EGC98163.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49]
          Length = 178

 Score = 52.2 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 18/101 (17%)

Query: 147 KPNDHVDVVMVRSLSER--------KPTVTVVLSNIRVIAIDHNI----------DSDER 188
           +P + VDV +               +    +++S +RV++                S+ +
Sbjct: 2   RPGNFVDVFLNLKREGNSMLDGEVSQTQARLLMSRVRVLSFGDATPDRDSGNNTNGSNGQ 61

Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
                 A L +   Q  AL   +S  +L+L LR+  D   +
Sbjct: 62  PSGVRIAVLAVPTAQVDALTLGESSGRLTLALRNPRDDELA 102


>gi|167039378|ref|YP_001662363.1| SAF domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300914019|ref|ZP_07131336.1| SAF domain protein [Thermoanaerobacter sp. X561]
 gi|307725296|ref|YP_003905047.1| SAF domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166853618|gb|ABY92027.1| SAF domain [Thermoanaerobacter sp. X514]
 gi|300890704|gb|EFK85849.1| SAF domain protein [Thermoanaerobacter sp. X561]
 gi|307582357|gb|ADN55756.1| SAF domain protein [Thermoanaerobacter sp. X513]
          Length = 181

 Score = 51.8 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 28/173 (16%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M  ++       A   A  LV   ++Q  E           V+I + D+  G V++ + +
Sbjct: 1   MSRIIKIALITAAVSAAFMLVFMQNIQKTE----------KVVIVEKDIPAGTVISEDAV 50

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           + V  P   V   +        ++ ++ G +V+   ++GD I +E L  +     +  L 
Sbjct: 51  KVVDIPASAVRPDY------ARSLTDVVGKVVKEGRVRGDFIPVEILTSKD----AEALG 100

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
                 T+ ++        ++  D V  ++      +      VL   +VI++
Sbjct: 101 PDHAVMTVPVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISV 145


>gi|326773108|ref|ZP_08232392.1| flp pilus assembly protein CpaB [Actinomyces viscosus C505]
 gi|326637740|gb|EGE38642.1| flp pilus assembly protein CpaB [Actinomyces viscosus C505]
          Length = 261

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
            V+   P +   VL++   ++ G ++T   +     P   +    +       + ++  G
Sbjct: 15  SVLRPGPQRGQQVLVASHAISAGAILTDQDVSISTLPTGALPQSPLT------STEQAVG 68

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
               + + KG  +         +G L+  L   +R   + I +      + +P   VD++
Sbjct: 69  NRAAISLEKGTVLTAS----MTSGSLAQQLGDDERLVQVAIDV---GAELARPGARVDII 121


>gi|118619767|ref|YP_908099.1| hypothetical protein MUL_4696 [Mycobacterium ulcerans Agy99]
 gi|118571877|gb|ABL06628.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
           Agy99]
          Length = 224

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                    V+++  DL+ G  +T   +         + DG   DV        L G  +
Sbjct: 47  PSPDTNLCEVVVAARDLSPGTPLTIADVRLETRSAATLPDGPQTDV------GALVGATL 100

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
             P  +G+ +   +++  G+    S    G R   + ++  SA+  +I+  D VDV+
Sbjct: 101 ASPTRRGEMLTDVRIL--GSRLAESTAGPGARVVPLHLAD-SALIDLIRVGDVVDVL 154


>gi|156741665|ref|YP_001431794.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941]
 gi|156232993|gb|ABU57776.1| SAF domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 336

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 84/282 (29%), Gaps = 77/282 (27%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVG--MVVTPNILEWVAFPE---ENVFDGFIDD 83
           P    T       P     V+ ++ D+     +  T  +L     PE       D +   
Sbjct: 30  PAPETTALPQEPTPVPLRKVVAARVDIPANTVLTDTETLLTLRDIPEPEYNAAPDQYFT- 88

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP-------KGKRAATMDI 136
                ++ EL   +    +   + IR   L    + GLS  +P          +   +++
Sbjct: 89  -----SVGELTTKVTLRALNATEIIRARDLT---DAGLSFQVPPPDTIDAPRNKVFPLEV 140

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSER-------------------------KPTVTVVL 171
              + V   I+P D VD+VM   +                                  ++
Sbjct: 141 GNLTGVADQIRPGDSVDLVMTYEIRRLIIRPSLTTDPETGQLVVTPIEETLVDRVTKTMV 200

Query: 172 SNIRVI-----AIDHNID-------SDERVLVGSTA-----T----------LELTPMQA 204
            N++V+     AI  +           E     S+A     T          L +T  +A
Sbjct: 201 QNVQVLRVLKPAIPQDTGTPTPGGAQGEPAPPPSSAQQQGDTYVPGAQWILLLAMTDQEA 260

Query: 205 KAL--VAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
           + +     Q     +++LVLR   D +   +    +  +   
Sbjct: 261 EIVKFTLDQQDPKPQITLVLRGRDDGDIEETTGITLRLLTSR 302


>gi|257792958|ref|YP_003186357.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479650|gb|ACV59968.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 235

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 47/155 (30%), Gaps = 22/155 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      +  +     V G IA        + +E            V +++  L     
Sbjct: 1   MKSWVRYTLATTLFVVGVGGSIAYNQFVSPMLTSEW-----------VYVARTQLPADTP 49

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + +E +  P+  V    I +         L G     P+ +   +            
Sbjct: 50  IQASDVERIRVPKSEVSPDAITNAEG------LMGTYTAQPVDQNQVLTALDTEPDP--- 100

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
               +  G     +  +  ++V   ++  D+VD++
Sbjct: 101 --FTITPGTEDVPIPSTWIASVSETLRQGDYVDLI 133


>gi|254478346|ref|ZP_05091725.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035704|gb|EEB76399.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 181

 Score = 50.7 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 65/173 (37%), Gaps = 28/173 (16%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M  ++       A   A  LV   ++Q  E           V++ + D+  G V++ + +
Sbjct: 1   MSRIIKIALITAAVSAAFMLVFMQNIQKTE----------KVVVVEKDIPAGTVISEDAV 50

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           + +  P   V   +        ++ ++ G +V+   ++GD I +E L  +     +  L 
Sbjct: 51  KIIDVPASAVRPEY------ARSLTDVVGKVVKEGRVRGDFIPVEILTSKD----AQPLG 100

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
                 T+ ++        ++  D V  ++      +      VL   +VI++
Sbjct: 101 PDHAVMTVPVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISV 145


>gi|25027510|ref|NP_737564.1| hypothetical protein CE0954 [Corynebacterium efficiens YS-314]
 gi|259507082|ref|ZP_05749982.1| secreted protein [Corynebacterium efficiens YS-314]
 gi|23492792|dbj|BAC17764.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165360|gb|EEW49914.1| secreted protein [Corynebacterium efficiens YS-314]
          Length = 215

 Score = 50.7 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 27/189 (14%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +++    A    I+A  L +   + T+            V++   D+  G  +T   LE 
Sbjct: 16  LLLRRALAATLLIVAGFLFAGSLISTDP----------RVVVFSRDIPAGTEITDQDLEL 65

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-------RGNGGL 121
              P + V D  I         +E  G +    +  G+ +   + V          +   
Sbjct: 66  RRIPADLVPDQVIR------IPEEALGRITASSVTAGEWVTAPRFVGTELVSSLTDDIDP 119

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           ++          + ++  S +  ++ P D + V+   S +        + S  +V+ +  
Sbjct: 120 AAASTDPFNMVPLKLADPSIIP-LLLPGDTISVI---SQNPDTGLPATIASGGKVVLVGD 175

Query: 182 NIDSDERVL 190
              +D   +
Sbjct: 176 TAGADPATV 184


>gi|33152387|ref|NP_873740.1| flp operon protein C [Haemophilus ducreyi 35000HP]
 gi|21326706|gb|AAL92466.1| unknown [Haemophilus ducreyi]
 gi|33148610|gb|AAP96129.1| flp operon protein C [Haemophilus ducreyi 35000HP]
          Length = 278

 Score = 50.7 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 26/221 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAM----RLVSPHHVQTEEVITENPA-------KFINVL 49
           M    L  + +  + A+  G +      +L +P    T+  + + P        K I  +
Sbjct: 1   MNYRSLFILSI-IILAVGFGGLFFLPDDQLNTPQQTTTQGEVAKAPQSKPSQSEKVITTV 59

Query: 50  ISKGDLAVGMVVTPNI--LEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
               D+  G ++ P    +  +  PE + + +  + ++    A + L G LV   + KG 
Sbjct: 60  TLNHDIEKGTLLQPEDYTVSELTVPENSPLVESDVKELVDSAANKSLQGFLVAENLSKGS 119

Query: 107 PIRLEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRS---- 159
            +  + L+D  +    L S+ P+ + A  + I      +   I+  D V V  V+     
Sbjct: 120 LLNQKVLIDPEDPRFILMSIDPQQEVAYRIYIKEAERYLLDSIRGGDMVSVYSVQQDLGR 179

Query: 160 LSERKPTVTVVLSNIRVIAID----HNIDSDERVLVGSTAT 196
               + ++  +  N +V+ +        D +       T T
Sbjct: 180 PERDQNSLAKIAENFKVLKVKKFSPQQADPNNDENTKKTDT 220


>gi|226365103|ref|YP_002782886.1| hypothetical protein ROP_56940 [Rhodococcus opacus B4]
 gi|226243593|dbj|BAH53941.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 227

 Score = 50.7 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 14/162 (8%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL  G+V+T   +E V     ++ DG +       A+ ++DG  +  P   G+ +   ++
Sbjct: 66  DLQPGVVLTKADVELVELEAGSLPDGAVT------AVADVDGRTLAGPTRAGETLTDVRV 119

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTV 169
           +       ++ +    R   + ++   AV  +++  D VDV+       S  +R+P  TV
Sbjct: 120 LGPRLAAAAAGM-DDARIVPVRLAD-PAVTELLREGDRVDVLTVDPDTPSNPDRRPGATV 177

Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
           + S   V+ +      + R        L L    A  + AA 
Sbjct: 178 LASRAVVVLV--TPSENGRDQRERVVMLALPASDATTVAAAS 217


>gi|300790122|ref|YP_003770413.1| hypothetical protein AMED_8314 [Amycolatopsis mediterranei U32]
 gi|299799636|gb|ADJ50011.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 205

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 12/122 (9%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
              +I    A+    +++  DL  G  +    +      +E    G +      + +  +
Sbjct: 36  AVFLIHPGSARGAPTVLAAHDLPSGATLGAADVRLADLSDEARPTGVL------STLDAV 89

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           DG L+   +  G+P+   +L       + +    G     + ++   AV  +++P   VD
Sbjct: 90  DGRLLAGAVRAGEPLTDVRL-----ATVPAPADPGTATVPVRLADV-AVAALLRPGQRVD 143

Query: 154 VV 155
           VV
Sbjct: 144 VV 145


>gi|256372054|ref|YP_003109878.1| SAF domain protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008638|gb|ACU54205.1| SAF domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 237

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
            + L  +    +  +   ++    +         V           ++    +  G  + 
Sbjct: 26  SSALRIVGSIVLAGVSLALLVASWLGGVRNAGAAVG----------VVVTRPIPAGATIE 75

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L   +     V            A+ +  G    V I  G  +    ++        
Sbjct: 76  RADLGLASI---TVPQAV---RATLLAVDDAVGRTAAVTIAPGTLLERSMVLGPRPRTPV 129

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
                  R+ T+ +  +S   G+I+P D VDV+   + S   P    + + + V+  D  
Sbjct: 130 -------RSITIAVPSTSVASGVIEPGDRVDVLAT-TQSASSPATLTIATQLLVL--DVQ 179

Query: 183 IDSDERVLVGSTATLE 198
             S + ++  +T +L+
Sbjct: 180 ASSGDELVTVATDSLD 195


>gi|323493935|ref|ZP_08099052.1| pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
 gi|323311876|gb|EGA65023.1| pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
          Length = 258

 Score = 50.3 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 30/232 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ ++V+ V       I    +S    Q E+VI   P   + VL+  G    G ++ 
Sbjct: 2   NRTIILVLVTLVIFSTFVFINNTYLSSSGEQQEQVIKSEPK--VAVLVVSGAAKKGQIIK 59

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            +I +        V +G   D    + +    G L +  +  G+ I  E + + G+    
Sbjct: 60  SSIHKTELVNLSQV-EGV--DYTPKDEIHIEPGALFKRDLNPGELISQEDISNPGDRDYM 116

Query: 123 SL-LPKGKRAATMDISISSAVGGM-IKPNDHVDVVMVRSLSE----------RKPTVTVV 170
            L + KG+      ++    V  + + P D V  V   S                   V+
Sbjct: 117 FLSVNKGELPYFYHVTGLGIVQTLSLYPGDKVSFVSTTSSDTNLLEDGYGDVGGLVSRVI 176

Query: 171 LSNIRVIAI--------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
           +S  RV+ +          + +  +  +V     + L       L  AQ V 
Sbjct: 177 ISGARVLQVIKGEEDEDAQDAEDKQYSIV-----VALRMRDVLKLEMAQKVG 223


>gi|284045239|ref|YP_003395579.1| hypothetical protein Cwoe_3787 [Conexibacter woesei DSM 14684]
 gi|283949460|gb|ADB52204.1| hypothetical protein Cwoe_3787 [Conexibacter woesei DSM 14684]
          Length = 230

 Score = 50.3 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 78/208 (37%), Gaps = 22/208 (10%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
               + E  + +      +VL+++  +A G  +        + P        + D     
Sbjct: 23  SSVQRREAALGQALGPLTHVLVTRAPVAAGAPLADARPALRSLPRRYAPPDALTDPAV-- 80

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG--MI 146
               LDG    V +  G  +    L        ++ +P G+      ++   A+G    I
Sbjct: 81  ----LDGAQAAVALPVGAYVTGASLRTPA----AAAVPVGR---GERVAEVVALGDPESI 129

Query: 147 KPNDHVDVVMVRSLSERKPTVTVV-LSNIRVI----AIDHNIDSDERVLVGS-TATLELT 200
                VDV++ R     +P  TV+ L ++ V+         I +D+        A+L +T
Sbjct: 130 VAGSRVDVLVTRDTDGDRPGETVLALEDVEVLAAAAPPAAEIGADDAGAGARVAASLRVT 189

Query: 201 PMQAKALVAAQSVAK-LSLVLRSIADLN 227
             QA  L AAQS A+ L L+ R+  D  
Sbjct: 190 VRQAVYLAAAQSFARELRLLPRAPQDRA 217


>gi|167038605|ref|YP_001666183.1| SAF domain-containing protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116994|ref|YP_004187153.1| SAF domain-containing protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857439|gb|ABY95847.1| SAF domain [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319930085|gb|ADV80770.1| SAF domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 181

 Score = 50.3 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 28/173 (16%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M  ++       A   A  LV   ++Q  E           V+I + D+  G V++ + +
Sbjct: 1   MSKIIKIALITAAVSAAFMLVFMQNIQKTE----------KVVIVEKDIPAGTVISEDAV 50

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           + V  P   V   +        ++  + G +V+   ++GD I +E L  +     S  L 
Sbjct: 51  KVVDVPASAVKPNY------ARSLSNVVGKVVKEGRVRGDFIPVEILTSKD----SQPLG 100

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
                 T+ ++        ++  D V  ++      +      VL   +VI++
Sbjct: 101 PDHAVMTVSVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISV 145


>gi|317133361|ref|YP_004092675.1| hypothetical protein Ethha_2449 [Ethanoligenens harbinense YUAN-3]
 gi|315471340|gb|ADU27944.1| hypothetical protein Ethha_2449 [Ethanoligenens harbinense YUAN-3]
          Length = 287

 Score = 50.3 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 51/247 (20%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            RL+  ++S   A+V G   + LV+   + T           + V+ +K  +  G  +TP
Sbjct: 37  KRLVASILSIGLAVVVGFGGVFLVNRLTMAT-----------VPVVRAKEIIPQGTQITP 85

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           N++E     + N+      +         + G      I+  D I  +KL          
Sbjct: 86  NMIEVDQVSKYNLQSNVTGNTSL------VVGAYATTEIMPQDNITGDKLSK---SNPVY 136

Query: 124 LLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTVTVVL 171
            L  G+   ++ + ++S A+ G +K  D V V  + +               + T    L
Sbjct: 137 TLDTGEMLVSVPVKNLSDALAGQLKAGDIVRVSALVASGSTAGSNNAGGTANQTTTPAEL 196

Query: 172 SNIRVIAI----DHNI---DSDERVLVGST-----------ATLELTPMQAKALVAAQSV 213
             ++V A+      +     +  +  +G+T            TL +   Q   L      
Sbjct: 197 QYVKVAAVAASNGQSAAVSQAQAKTAIGTTTSSNTSNLPASVTLYVNEQQLSRLTQMSQS 256

Query: 214 AKLSLVL 220
            +L+  L
Sbjct: 257 -ELTFAL 262


>gi|291575287|gb|ADE10212.1| hypothetical protein [Actinoplanes liguriensis]
          Length = 266

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 61/227 (26%), Gaps = 42/227 (18%)

Query: 48  VLISKGDLAVGM---VVTPNILEWVA-FPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +L++   +  G     +    L      P   V  G +           L G L    +L
Sbjct: 42  ILVAGQHIPSGTSGAEIRARGLTERLLVPTVTVPAGALTTWDSALDPLRLGGDLQPRQLL 101

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKR--AATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
                          G     +P  +R  A ++ ++++  V G I P D V V       
Sbjct: 102 MRTLFVPASPAPSHTG----RIPVPRRSLAVSVALNVAPQVAGNITPGDQVAVYYTYQAK 157

Query: 162 -------ERKPTVTVVLSNIRVIAIDHNIDSDE------------------------RVL 190
                  E  P   ++L   RVI I    +  +                        + +
Sbjct: 158 VLMAEDHETIPMTELLLPKARVITIG-EAEPGQAPVTPSPSPTPGPSASAGDSTAAVKEI 216

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
                TL +    A  LV A     L L L        +       W
Sbjct: 217 QRYVVTLAVGDTDALRLVHAAQSGSLYLALLGPNATASTGPAIDTSW 263


>gi|319790433|ref|YP_004152066.1| flagella basal body P-ring formation protein FlgA [Thermovibrio
           ammonificans HB-1]
 gi|317114935|gb|ADU97425.1| flagella basal body P-ring formation protein FlgA [Thermovibrio
           ammonificans HB-1]
          Length = 321

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           A  I   LV+   V+   +      +   V+++   +  G  +TP +++  + P    ++
Sbjct: 170 ARFIYQVLVNGKVVKKVWIPVRI-DRLEKVVVAAVLIPKGTKITPTMVKLASVPSRKAYN 228

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            F       ++++E+ G + R  IL G  IR   L   
Sbjct: 229 AF-------HSVKEVVGSIARTDILSGKIIRPTMLKPN 259


>gi|218290594|ref|ZP_03494696.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239378|gb|EED06575.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 261

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 31/176 (17%)

Query: 7   MGIVVSGVFALV-AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           M +V     AL   GI     +       + ++ E     + V ++   +     +T + 
Sbjct: 1   MAMVSKATMALGLCGIGVAVWL-------DWMVLERANATVQVPVAAQTIPPYTTITSSD 53

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
           + W + P   +    + +           G L  + +  GDPI   +L  +G+    +  
Sbjct: 54  ITWKSIPRNALPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGSLQAYAAS 104

Query: 126 PKGKRAATMDISISSA-VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
                   + +++S + +   + P   V +V+            VV  ++ V+A +
Sbjct: 105 QDD---VLVPVNVSPSPITEAVTPGATVTLVVNG----------VVYHDVLVVATN 147


>gi|327538081|gb|EGF24771.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
          Length = 590

 Score = 49.5 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 91/291 (31%), Gaps = 50/291 (17%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI---- 65
           V +   AL  G     LV      T+E     P   + V I    L     + P      
Sbjct: 301 VSAVTSALELGATVNVLVRSGRPDTDEPSNNVPEGMVAVPIPGQTLLAYQTIRPTSFEDP 360

Query: 66  ----LEWVAFPEENVF-DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
               +  +  P E      +I D      + +L G + R  +    PI+   L+  G   
Sbjct: 361 ATAYVRTIQVPAETASQSNWITD------LSKLVGRIPRHDLPATVPIQEGDLMPVGTMA 414

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--- 176
           GLS   P G+    +D               H+D+V  R+  E +       +N+ +   
Sbjct: 415 GLSGATPPGRVLFFLDTEGLIGGDAFEF-GQHLDLVASRTADEPRGGSRGGFANVTLTDA 473

Query: 177 -------IAIDHNI--------------DSDERVLVGSTATLELTPMQAKALVAAQSVAK 215
                  IA D  +                D +        + + P Q   L  A +V  
Sbjct: 474 QRTSVEPIADDVIVMMPTRSPGNPTARKSKDSKDSPAPKLIVAVRPEQVAHLEYAVAVGS 533

Query: 216 -LSLVLRS--------IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
            L   +RS        +++  P+    +  +D   + K+  I   G   ++
Sbjct: 534 NLRATVRSGRVDSTELVSERQPAGRVTAMRFDPLADTKQTDIYVGGSSQSQ 584



 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKP 148
             ++ G +V+     G         +RG   GL+   P G RA T++ +  + V   I  
Sbjct: 147 ATDIIGRVVKSDKSSGFAFAEANFFERGTPAGLAGATPPGMRAMTLEAAQLAGVH-RISM 205

Query: 149 NDHVDVV 155
            + +D+V
Sbjct: 206 GEQIDLV 212


>gi|315646608|ref|ZP_07899726.1| SAF domain protein [Paenibacillus vortex V453]
 gi|315278251|gb|EFU41571.1| SAF domain protein [Paenibacillus vortex V453]
          Length = 365

 Score = 49.5 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 35/191 (18%)

Query: 2   KLTRLMGIVVSGVF---ALVAGIIAMRLVSPHHVQTEEVIT-------------ENPAKF 45
           +  +L+   ++G     AL AG +   L      Q EE +              +     
Sbjct: 7   RSRKLIFAGLAGAAVTGALCAGTMIYYLHGYKEQQGEERMKYELRITELEETQLQQLNSM 66

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
               +   D+  G  +    ++ V  P E   +  +      +  +E+ G  V++ +L+G
Sbjct: 67  QVAWVPVRDIPPGHFIEAKDIKEVRLPYEGASNNLL------SVKEEIAGKGVKIELLQG 120

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            PI    L +      S L  +  ++  +           ++  D VDV +     +   
Sbjct: 121 TPITRTMLFEE-EPTPSDLRHREMKSVYLPSD--------LRQGDVVDVRVQFPTGQD-- 169

Query: 166 TVTVVLSNIRV 176
              ++LS  ++
Sbjct: 170 --YIILSKKKI 178


>gi|119025306|ref|YP_909151.1| hypothetical protein BAD_0288 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764890|dbj|BAF39069.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 266

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 15/113 (13%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
                   ++++  ++A G  +T   +E    P +               + +  G++ +
Sbjct: 75  RAAIATQPIVVAVRNVAKGTAITREDVELREAPSDGSLSNAFHT------LDDAVGLIAQ 128

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           V I   D +        G    S ++P+G    ++++ ++S  GG+I P D V
Sbjct: 129 VGIGAHDVLMS------GMARASPVVPQGH--TSIEVRLASVAGGLI-PGDKV 172


>gi|218289538|ref|ZP_03493766.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240406|gb|EED07588.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 235

 Score = 49.1 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 22/169 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      +  +     V G IA        + +E            V +++  +     
Sbjct: 1   MKSWVRYTLATTLFVVGVGGSIAYNQFVAPILTSEW-----------VYVARTQMPADTP 49

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    +E +  P+  V    I +         L G     P+ +   +            
Sbjct: 50  IQATDVERIRVPKSEVSPDAITNAEG------LIGAYTAQPVDQNQVLTALDTEPDP--- 100

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169
               +  G     +  +  ++V   ++  D+VD++ +         V  
Sbjct: 101 --FTITPGTEDVPIPSTWIASVSETLRQGDYVDLIPIAEPQAGSNNVGT 147


>gi|32477848|ref|NP_870842.1| hypothetical protein RB13066 [Rhodopirellula baltica SH 1]
 gi|32448405|emb|CAD77920.1| hypothetical protein-transmembrane prediction [Rhodopirellula
           baltica SH 1]
          Length = 590

 Score = 49.1 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 92/291 (31%), Gaps = 50/291 (17%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI---- 65
           V +   AL  G     LV      T+E     P   + V I    L     + P      
Sbjct: 301 VSAVTSALELGATVNVLVRSGRPDTDEPSNNVPEGMVAVPIPGQTLLAYQTIRPTSFEDP 360

Query: 66  ----LEWVAFPEENVF-DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
               +  +  P E      +I D      + +L G + R  +    PI+   L+  G   
Sbjct: 361 ATAYVRTIQVPAETASQSNWITD------LSKLVGRIPRHDLPATVPIQEGDLMPVGTMA 414

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--- 176
           GLS   P G+    +D               H+D+V  R+  E +       +N+ +   
Sbjct: 415 GLSGATPPGRVLFFLDTEGLIGGDAFEF-GQHLDLVASRTADEPRGGSRGGFANVTLTDA 473

Query: 177 -------IAIDHNI--------------DSDERVLVGSTATLELTPMQAKALVAAQSVAK 215
                  IA D  +                D +    +   + + P Q   L  A +V  
Sbjct: 474 QRTSVEPIADDVIVMMPTRSPGNPTAGKSKDTKDSPSAKLIVAVRPEQVAHLEYAVAVGS 533

Query: 216 -LSLVLRS--------IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
            L   +RS        +++  P+    +  +D   + K+  I   G   ++
Sbjct: 534 NLRATVRSGRVDSTDLVSERQPAGRVAAMRFDPLADTKQTDIYVGGSSQSQ 584



 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKP 148
             ++ G +V+     G         +RG   GL+   P G RA T++ +  + V   I  
Sbjct: 147 ATDIIGRVVKSDKSSGFAFAEANFFERGTPAGLAGATPPGMRAMTLEAAQLAGVH-RISM 205

Query: 149 NDHVDVV 155
            + +D+V
Sbjct: 206 GEQIDLV 212


>gi|120405786|ref|YP_955615.1| SAF domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119958604|gb|ABM15609.1| SAF domain [Mycobacterium vanbaalenii PYR-1]
          Length = 217

 Score = 49.1 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 24/167 (14%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           VV+G   ++AG+ A R              +  A+  +V+++  DL+ G  +T   +   
Sbjct: 30  VVAGALVVLAGVAAWR-------------GDPQAEQSDVVVTLHDLSPGAEITAADVRVE 76

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
                 V +G   DV        + G  +  P  +G+ +   +L+       ++      
Sbjct: 77  TRSASTVPEGAHSDV------DAVVGATLAGPTRRGEIVTDVRLLSSRLAESAA--GPDA 128

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
           R   + ++ + A+  +++  D VD+V     ++      ++ ++  V
Sbjct: 129 RIVPIPLADA-ALTDLVRAGDVVDIVA--GPADEAGAARLIATDAVV 172


>gi|297572143|ref|YP_003697917.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932490|gb|ADH93298.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 203

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 59/177 (33%), Gaps = 22/177 (12%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
             FA +  + A  LVS                    +++  DL  G  ++ + L  +  P
Sbjct: 7   IGFAALVAVFAQSLVSALDSSAPARYRA--------VVAATDLPAGHQLSDSDLSVLPLP 58

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
            + +    +        + ++ G  + V + KG  I    ++       +S    G   A
Sbjct: 59  TQ-LPGSTV-------NVTDVSGHHLLVSVPKGALISTHHVLSPQTLEQAS---PGYVIA 107

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDSDE 187
            + ++ +  +  +I    +VD+      SL        ++  +IRV  +        
Sbjct: 108 PVLLADTGGLS-LIHTGSYVDLFKPGKESLDGSSSEAELIAHHIRVAGVAKTAGEKN 163


>gi|296169796|ref|ZP_06851411.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895590|gb|EFG75289.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 225

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 83/217 (38%), Gaps = 28/217 (12%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           V +G   ++AG+ A+R                   + +V+++  DL  G  +TP  +   
Sbjct: 30  VAAGGLVVLAGLAALR-------------ANPAGDYADVVVADHDLRPGAALTPADVRLE 76

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GNGGLSSLLPK 127
                 + DG + DV        +    +  P  +G+ +   +L+     +  ++     
Sbjct: 77  KRLATTLPDGALADVS------AVANSTLTGPARRGEVLTDVRLLGSRLADAAIALKAGP 130

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           G R   + ++  SA+  +++  D VDV+      +    +    VV ++  V+ +  +  
Sbjct: 131 GARLVPLRLAD-SALIELVRVGDVVDVLAAPAAGTPGTPQAVPRVVATDAVVVLV--SAK 187

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVL 220
              +   G    L   P +    VA  ++ + ++L L
Sbjct: 188 PKAQAADGDRVVLVALPARVANTVAGSALGQAVTLTL 224


>gi|41407019|ref|NP_959855.1| hypothetical protein MAP0921c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395370|gb|AAS03238.1| hypothetical protein MAP_0921c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 226

 Score = 48.7 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 19/191 (9%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
            ++    +  V++++ DL  G  +T   +         V +G       P  +  + G  
Sbjct: 46  RSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIGAVLGST 99

Query: 98  VRVPILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           +  P  +G+ +   +L+        + S    G R   +  +   A+  +++P D VDV+
Sbjct: 100 LAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLHPAD-GALIDLVRPGDVVDVL 158

Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAA 210
                +    +     +  +V+A D      +     +        L   P      VA 
Sbjct: 159 ----AAPANTSAETTHAAPKVLATDAVVVLVSAREKIQAAGADRVVLVALPAGVANTVAG 214

Query: 211 QSVA-KLSLVL 220
            ++   ++L L
Sbjct: 215 AALGQTVTLTL 225


>gi|254773979|ref|ZP_05215495.1| hypothetical protein MaviaA2_04794 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 226

 Score = 48.7 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 19/191 (9%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
            ++    +  V++++ DL  G  +T   +         V +G       P  +  + G  
Sbjct: 46  RSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIGAVLGST 99

Query: 98  VRVPILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           +  P  +G+ +   +L+        + S    G R   +  +   A+  +++P D VDV+
Sbjct: 100 LAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLHPAD-GALIDLVRPGDVVDVL 158

Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAA 210
                +    +     +  +V+A D      +     +        L   P      VA 
Sbjct: 159 ----AAPANTSAETTHAAPKVLATDAVVVLVSAREKIQAAGADRVVLVALPAGVANTVAG 214

Query: 211 QSVA-KLSLVL 220
            ++   ++L L
Sbjct: 215 AALGQTVTLTL 225


>gi|254478253|ref|ZP_05091634.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035849|gb|EEB76542.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 181

 Score = 48.7 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +N  K   V+I + D+  G V++ + ++ +  P   V   +        +  ++ G +V+
Sbjct: 24  QNIQKTEKVVIVEKDIPAGTVISEDAVKVIDVPASVVNPDY------ARSPADVVGKVVK 77

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
              ++GD I +E L  +     S  L       T+ I+        ++  D V  V+   
Sbjct: 78  EGRVRGDFIPVEILTSKD----SQPLGPDHAVMTVPITSVE--AKTLQSGDTVSFVVFDQ 131

Query: 160 LSERKPTVTVVLSNIRVIAI 179
              R      +L   +VI++
Sbjct: 132 TGSR------ILDGFKVISV 145


>gi|253576735|ref|ZP_04854062.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843945|gb|EES71966.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 318

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 18/127 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMR----------LVSPHHVQTEEVITENPAKFINVLI 50
           M L+ L+G+V +G  AL  G   +R          L+  +  Q   +  +   + +   +
Sbjct: 11  MLLSGLVGVVAAG--ALFTGYTFVRERHVHAERKALIQDYEAQLASLRDQAQQRTVQGWV 68

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
              D+  G  +  + L+ V  P  +V            + + + G   ++ +    P+  
Sbjct: 69  PTRDIPAGNRIAASDLKRVELPANSVPADLFK------SQEAIAGKYAKIALRSMTPLTE 122

Query: 111 EKLVDRG 117
             + +  
Sbjct: 123 ALVYEEA 129


>gi|291457156|ref|ZP_06596546.1| putative flagella basal body P-ring formation protein FlgA
           [Bifidobacterium breve DSM 20213]
 gi|291380991|gb|EFE88509.1| putative flagella basal body P-ring formation protein FlgA
           [Bifidobacterium breve DSM 20213]
          Length = 188

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 19/181 (10%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   V+I+   +A G +++   +     P   V   +  D        E+ G++ ++
Sbjct: 27  AQVQTAPVVIADRPIARGEIISSADIRVELLPVSTVGSSYATDA------DEITGLIAQI 80

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI      D      + L P G     + +   ++    + P D+V +V     
Sbjct: 81  DIAVNDPISTHMARD------APLPPTGTTVIEVRL---ASNPDDLLPGDNVQLVSAVGC 131

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +       V+     V+AI    ++          +  + P  A A++  Q    +  V+
Sbjct: 132 AGEDC---VLAEEALVMAIG-EAEASSLGSNERQVSFAMKPHAAAAVMELQQAGAIVAVM 187

Query: 221 R 221
           R
Sbjct: 188 R 188


>gi|228982964|ref|ZP_04143223.1| hypothetical protein bthur0002_60970 [Bacillus thuringiensis Bt407]
 gi|228777147|gb|EEM25455.1| hypothetical protein bthur0002_60970 [Bacillus thuringiensis Bt407]
          Length = 292

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 35/204 (17%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +       + ++K D+     V  ++   V   +  +  G++ D+ Q      + G  ++
Sbjct: 47  QQEKVGTTIYVAKEDIQAKTEVNESMFTPVHIAKGGLLKGYVTDISQ------IKGAQLK 100

Query: 100 VPILKGDPIRLEKLVDRGNGG--------LSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
             +LKG+PI  ++L  +             S  +P  K A  + +               
Sbjct: 101 GGLLKGEPIATQRLESKKENTDEKLKIKIQSEFMPDIKNADNVKV--------F------ 146

Query: 152 VDVVMVRSLSERKPTVTVVLS-NIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
             V++    SE+    T+  S  I V A         +        L+LT  + K    A
Sbjct: 147 --VLLTNKHSEQSEVQTLFASKKIEVSAQAPEATQPSKQEYY----LQLTEDEVKQYYDA 200

Query: 211 QSVAKLSLVLRSIADLNPSSSEDS 234
           QS  K+ +      D +  SSE  
Sbjct: 201 QSKGKIIISKMMSLDTSEISSEGG 224


>gi|149188864|ref|ZP_01867154.1| hypothetical protein VSAK1_05925 [Vibrio shilonii AK1]
 gi|148837284|gb|EDL54231.1| hypothetical protein VSAK1_05925 [Vibrio shilonii AK1]
          Length = 148

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 23/135 (17%)

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTVTVVLSNIRVIAIDH 181
           +++S  + +   I+P   +DV+ V S ++            R    ++ L +++V+ +  
Sbjct: 6   LEVSDKNLINDYIRPGSFIDVLTVSSPNDNLAGNVDKPKRFRGVKASMFLKHVKVLNVGD 65

Query: 182 NIDSDERVLVGS---------TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +   D   +            T  +E+ P     L  AQ    +  + RS     P  +E
Sbjct: 66  D-KGDNSSVTARSPTKENGLTTVVIEVKPDDLAKLALAQRTMHIE-IYRSQTYKQPEYAE 123

Query: 233 DSDVWDVQEEGKEIQ 247
             ++ D     +E++
Sbjct: 124 VRNIIDNYTGIEELR 138


>gi|187478181|ref|YP_786205.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella
           avium 197N]
 gi|115422767|emb|CAJ49295.1| flagella basal body P-ring formation protein [Bordetella avium
           197N]
          Length = 249

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 26/128 (20%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++   +  G  +T   L+       N+  G + D         + G+  R  I  G PI
Sbjct: 128 YVASRQIPAGQAITSEDLDSREGDLMNLPPGAMTDARS------IVGMQARHRINIGQPI 181

Query: 109 RLE--------------KLVDRGNGGLSS----LLPKGKRAATMDISISSA--VGGMIKP 148
           R                +++ RGNG + S     L  G   AT+ +   S   V G+++P
Sbjct: 182 RGSALRDAASISRGQNVRIIARGNGFVVSSEGQALEDGAPGATIQVRTQSGQVVSGVLQP 241

Query: 149 NDHVDVVM 156
              V++ +
Sbjct: 242 GGQVELQL 249


>gi|108801257|ref|YP_641454.1| hypothetical protein Mmcs_4293 [Mycobacterium sp. MCS]
 gi|119870408|ref|YP_940360.1| SAF domain-containing protein [Mycobacterium sp. KMS]
 gi|108771676|gb|ABG10398.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119696497|gb|ABL93570.1| SAF domain [Mycobacterium sp. KMS]
          Length = 218

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 9/124 (7%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                V ++     ++V+++  DL  G  +  + +     P   V DG   D        
Sbjct: 38  AAVAAVRSDPDGDQVDVVVAATDLTPGTELAESDVRVERRPLTTVPDGAAVDP------T 91

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
            + G  V  P  +G+ +   +L+       ++      R  ++ ++  + V  +++  D 
Sbjct: 92  AVIGATVAGPTRRGEVLTDVRLLGPRIAEAAA--GPDARIVSLQLADGALVD-LVRTGDV 148

Query: 152 VDVV 155
           VDV+
Sbjct: 149 VDVL 152


>gi|187251720|ref|YP_001876202.1| SAF domain-containing protein [Elusimicrobium minutum Pei191]
 gi|186971880|gb|ACC98865.1| SAF domain protein [Elusimicrobium minutum Pei191]
          Length = 215

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 10/139 (7%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           ++ I V ++  D+    V+T   +   A P     D F  +      +  ++G +  V I
Sbjct: 19  SEPIKVFVALHDIPALSVITGQDIAT-AVPAIAERDAFFSEQD----IALIEGAVALVNI 73

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND--HVDVVM--VR 158
            KG  I+   L  +     SS L KG     + + I +A   +        VD+++   R
Sbjct: 74  PKGTQIKKNSLKLKDKKPSSSELNKGWGYYILPVDIQTADMVLSNGGSRERVDLIVRTYR 133

Query: 159 SLSE-RKPTVTVVLSNIRV 176
            + +  +P V  +L NI V
Sbjct: 134 EIGDLNEPVVFTLLQNIEV 152


>gi|84385705|ref|ZP_00988736.1| hypothetical protein V12B01_26264 [Vibrio splendidus 12B01]
 gi|84379685|gb|EAP96537.1| hypothetical protein V12B01_26264 [Vibrio splendidus 12B01]
          Length = 251

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 19/224 (8%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHV-QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
            V  +F  ++  +A   VS + + Q E V+ E   + ++V     D+    VV   +L+ 
Sbjct: 4   AVLFLFIAISLFLAFFYVSENFLSQEEVVVEEEKIRMVDVAFLNNDVVKASVVKQQLLDI 63

Query: 69  VAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL-LP 126
            + PE  V   G+I             G L    +  G  +  +   + G+     L L 
Sbjct: 64  QSLPETTVKARGYIPYTDVNIQA----GALWSNDVEAGQVLNADYFSNPGDKDYMYLSLS 119

Query: 127 KGKRAATMDISISSAVGGM-IKPNDHVDVVMVRSLSER----------KPTVTVVLSNIR 175
           K +       S SS V  + I+P D V  V   S                T  V++   R
Sbjct: 120 KNEVPYYYTSSGSSIVEALPIQPQDRVSFVATTSSESNLLEDGYSDINNLTSNVIIDGAR 179

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           V+ +  + + D+     S   + LT  Q   L  AQ +  ++LV
Sbjct: 180 VLQVVESNNEDDEDKEHSLI-IALTVKQVLKLEMAQKIGAITLV 222


>gi|118465730|ref|YP_880352.1| hypothetical protein MAV_1099 [Mycobacterium avium 104]
 gi|118167017|gb|ABK67914.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 226

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 75/211 (35%), Gaps = 22/211 (10%)

Query: 21  IIAMRLVSPHHV---QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           ++A R+ +   V       + ++    +  V++++ DL  G  +T   +         V 
Sbjct: 26  VLARRIAAGTLVVLAAIAALRSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVP 85

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMD 135
           +G       P  +  + G  +  P  +G+ +   +L+        + S    G R   + 
Sbjct: 86  EG------SPAEIGAVLGSTLAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLH 139

Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH-----NIDSDERVL 190
            +   A+  +++P D VDV+     +    +     +  +V+A D      +     +  
Sbjct: 140 PAD-GALIDLVRPGDVVDVL----AAPANTSAETTHAAPKVLATDAVVVLVSAREKIQAA 194

Query: 191 VGSTATLELTPMQAKALVAAQSVA-KLSLVL 220
                 L   P      VA  ++   ++L L
Sbjct: 195 GADRVVLVALPAGVANTVAGAALGQTVTLTL 225


>gi|148822199|ref|YP_001286953.1| hypothetical protein TBFG_11008 [Mycobacterium tuberculosis F11]
 gi|218752660|ref|ZP_03531456.1| hypothetical protein MtubG1_04075 [Mycobacterium tuberculosis GM
           1503]
 gi|253799982|ref|YP_003032983.1| hypothetical protein TBMG_02999 [Mycobacterium tuberculosis KZN
           1435]
 gi|254549974|ref|ZP_05140421.1| hypothetical protein Mtube_05853 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289555228|ref|ZP_06444438.1| hypothetical protein TBXG_02978 [Mycobacterium tuberculosis KZN
           605]
 gi|289761124|ref|ZP_06520502.1| hypothetical protein TBIG_02544 [Mycobacterium tuberculosis GM
           1503]
 gi|297633515|ref|ZP_06951295.1| hypothetical protein MtubK4_05303 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730500|ref|ZP_06959618.1| hypothetical protein MtubKR_05383 [Mycobacterium tuberculosis KZN
           R506]
 gi|313657829|ref|ZP_07814709.1| hypothetical protein MtubKV_05383 [Mycobacterium tuberculosis KZN
           V2475]
 gi|148720726|gb|ABR05351.1| hypothetical protein TBFG_11008 [Mycobacterium tuberculosis F11]
 gi|253321485|gb|ACT26088.1| hypothetical protein TBMG_02999 [Mycobacterium tuberculosis KZN
           1435]
 gi|289439860|gb|EFD22353.1| hypothetical protein TBXG_02978 [Mycobacterium tuberculosis KZN
           605]
 gi|289708630|gb|EFD72646.1| hypothetical protein TBIG_02544 [Mycobacterium tuberculosis GM
           1503]
 gi|328459724|gb|AEB05147.1| hypothetical protein TBSG_03018 [Mycobacterium tuberculosis KZN
           4207]
          Length = 218

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 15/164 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  DL  G  +TP  +         + DG   D      +  + G  +  P  +G+
Sbjct: 55  EVVVAAQDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LDAVVGSTLASPTRRGE 108

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +   +L+  G+    S      R   + ++ S+ V  +++  D VDV +   +++    
Sbjct: 109 VLTDVRLL--GSRLAESTAGPDARIVPLHLADSALVD-LVRVGDVVDV-LAAPVTDSPAA 164

Query: 167 VTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTPMQAK 205
           + ++ ++  V+ +         DSD  VLV   A L  T   A 
Sbjct: 165 LRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAA 208


>gi|307265038|ref|ZP_07546599.1| SAF domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920023|gb|EFN50236.1| SAF domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 181

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 28/173 (16%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M  ++       A   A  LV   ++Q  E           V++ + D+  G V++ + +
Sbjct: 1   MSRIIKIALITAAVSAAFMLVFMQNIQKTE----------KVVVVEKDIPAGTVISEDAV 50

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           + +  P   V   +        +  ++ G +V+   +KGD I +E L  +    LS    
Sbjct: 51  KVIDVPASVVNPSY------ARSPADVVGKVVKDGRVKGDFIPVEILTSKDAQPLS---- 100

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
             +   T+ ++        ++    V  ++      +      V+   +VI++
Sbjct: 101 PDRAVMTVPVTSVE--AKTLQSGSTVSFIVFDQTGSK------VIEGFKVISV 145


>gi|260204206|ref|ZP_05771697.1| hypothetical protein MtubK8_07852 [Mycobacterium tuberculosis K85]
 gi|289573628|ref|ZP_06453855.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289538059|gb|EFD42637.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 218

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 15/177 (8%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
              + +        V+++  DL  G V+TP  +         + DG   D      +  +
Sbjct: 42  VAALRSNPEDDRAEVVVAAHDLRPGTVLTPGDVRLEKRSATTLPDGSQAD------LDAV 95

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
            G  +  P  +G+ +   +L+  G+    S      R   + ++ S+ V  +++  D VD
Sbjct: 96  VGSTLASPTRRGEVLTDVRLL--GSRLAESTAGPDARIVPLHLADSALVD-LVRVGDVVD 152

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTPMQAK 205
           V +   +++    + ++ ++  V+ +         DSD  VLV   A L  T   A 
Sbjct: 153 V-LAAPVTDSPAALRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAA 208


>gi|323702231|ref|ZP_08113897.1| SAF domain-containing protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323532721|gb|EGB22594.1| SAF domain-containing protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 212

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 23/161 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++R  GI+ + V A+V   +     +  +            K   V  +   +  G  + 
Sbjct: 1   MSRKWGIITALVIAIVFTTLVGVSSNHKYAAA--------TKPTKVYQAAKFIPQGTTIK 52

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + ++ V FP E++    I D       +E+ G    V +LK   I    +         
Sbjct: 53  ESDIKEVDFP-ESLSSNLIKD------KKEIVGKGAVVSMLKDQKIYKGSVSPGAGK--- 102

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
                G     +   +S +   +  P ++V+++ V     +
Sbjct: 103 ---RPGFVEILIPTDLSKSA--LALPGEYVNLIPVDDSGTQ 138


>gi|257068486|ref|YP_003154741.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810]
 gi|256559304|gb|ACU85151.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810]
          Length = 211

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 46/125 (36%), Gaps = 12/125 (9%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           + + ++++  +L  G  ++   L       E + +G          ++++ G   R+PI 
Sbjct: 45  RGVEIVVADAELTPGTALSRADLRTARIAPELLPEGA------AQQIEDVVGQTARLPIE 98

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            G P+    L D      +  LP G     + +  +      ++P   + +++       
Sbjct: 99  PGTPLLPGLLEDPA----APALPSGSALMAVPVPRALVAH--LQPGTELMLLVTDPSQPS 152

Query: 164 KPTVT 168
              V+
Sbjct: 153 GIAVS 157


>gi|262201376|ref|YP_003272584.1| SAF domain-containing protein [Gordonia bronchialis DSM 43247]
 gi|262084723|gb|ACY20691.1| SAF domain protein [Gordonia bronchialis DSM 43247]
          Length = 220

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +       VL++  +L  G  +T   +  V  P   + DG +       +  E  G  V 
Sbjct: 53  QRTTGEQPVLVAVHELRPGQPLTAEDVTVVRVPSSLMPDGAL------VSPAEGLGRTVA 106

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGK------RAATMDISISSAVGGMIKPNDHVD 153
             +  G+ +   +L       L++ LP         R   + ++  +    +++  D VD
Sbjct: 107 GRVRVGELVTDARL-------LTAHLPADLTGLDDARLVPVHLADETLTS-LLRSGDVVD 158

Query: 154 VV 155
           V+
Sbjct: 159 VL 160


>gi|15608130|ref|NP_215505.1| hypothetical protein Rv0990c [Mycobacterium tuberculosis H37Rv]
 gi|15840415|ref|NP_335452.1| hypothetical protein MT1019 [Mycobacterium tuberculosis CDC1551]
 gi|148660771|ref|YP_001282294.1| hypothetical protein MRA_0997 [Mycobacterium tuberculosis H37Ra]
 gi|167968056|ref|ZP_02550333.1| hypothetical protein MtubH3_08483 [Mycobacterium tuberculosis
           H37Ra]
 gi|254231287|ref|ZP_04924614.1| hypothetical protein TBCG_00979 [Mycobacterium tuberculosis C]
 gi|254363908|ref|ZP_04979954.1| hypothetical protein TBHG_00974 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|306775124|ref|ZP_07413461.1| hypothetical protein TMAG_00929 [Mycobacterium tuberculosis
           SUMu001]
 gi|306781961|ref|ZP_07420298.1| hypothetical protein TMBG_01621 [Mycobacterium tuberculosis
           SUMu002]
 gi|306783684|ref|ZP_07422006.1| hypothetical protein TMCG_00603 [Mycobacterium tuberculosis
           SUMu003]
 gi|306788039|ref|ZP_07426361.1| hypothetical protein TMDG_03597 [Mycobacterium tuberculosis
           SUMu004]
 gi|306792372|ref|ZP_07430674.1| hypothetical protein TMEG_00874 [Mycobacterium tuberculosis
           SUMu005]
 gi|306796774|ref|ZP_07435076.1| hypothetical protein TMFG_02809 [Mycobacterium tuberculosis
           SUMu006]
 gi|306802661|ref|ZP_07439329.1| hypothetical protein TMHG_00166 [Mycobacterium tuberculosis
           SUMu008]
 gi|306806841|ref|ZP_07443509.1| hypothetical protein TMGG_03063 [Mycobacterium tuberculosis
           SUMu007]
 gi|306967040|ref|ZP_07479701.1| hypothetical protein TMIG_03552 [Mycobacterium tuberculosis
           SUMu009]
 gi|306971230|ref|ZP_07483891.1| hypothetical protein TMJG_02659 [Mycobacterium tuberculosis
           SUMu010]
 gi|307078960|ref|ZP_07488130.1| hypothetical protein TMKG_01481 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083518|ref|ZP_07492631.1| hypothetical protein TMLG_01695 [Mycobacterium tuberculosis
           SUMu012]
 gi|2052124|emb|CAB08150.1| HYPOTHETICAL PROTEIN Rv0990c [Mycobacterium tuberculosis H37Rv]
 gi|13880585|gb|AAK45266.1| hypothetical protein MT1019 [Mycobacterium tuberculosis CDC1551]
 gi|124600346|gb|EAY59356.1| hypothetical protein TBCG_00979 [Mycobacterium tuberculosis C]
 gi|134149422|gb|EBA41467.1| hypothetical protein TBHG_00974 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504923|gb|ABQ72732.1| hypothetical protein MRA_0997 [Mycobacterium tuberculosis H37Ra]
 gi|308216331|gb|EFO75730.1| hypothetical protein TMAG_00929 [Mycobacterium tuberculosis
           SUMu001]
 gi|308325350|gb|EFP14201.1| hypothetical protein TMBG_01621 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331529|gb|EFP20380.1| hypothetical protein TMCG_00603 [Mycobacterium tuberculosis
           SUMu003]
 gi|308335333|gb|EFP24184.1| hypothetical protein TMDG_03597 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339140|gb|EFP27991.1| hypothetical protein TMEG_00874 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342811|gb|EFP31662.1| hypothetical protein TMFG_02809 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346664|gb|EFP35515.1| hypothetical protein TMGG_03063 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350579|gb|EFP39430.1| hypothetical protein TMHG_00166 [Mycobacterium tuberculosis
           SUMu008]
 gi|308355270|gb|EFP44121.1| hypothetical protein TMIG_03552 [Mycobacterium tuberculosis
           SUMu009]
 gi|308359224|gb|EFP48075.1| hypothetical protein TMJG_02659 [Mycobacterium tuberculosis
           SUMu010]
 gi|308363136|gb|EFP51987.1| hypothetical protein TMKG_01481 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366793|gb|EFP55644.1| hypothetical protein TMLG_01695 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720557|gb|EGB29638.1| hypothetical protein TMMG_02985 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 218

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 15/164 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  DL  G  +TP  +         + DG   D      +  + G  +  P  +G+
Sbjct: 55  EVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LDAVVGSTLASPTRRGE 108

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +   +L+  G+    S      R   + ++ S+ V  +++  D VDV +   +++    
Sbjct: 109 VLTDVRLL--GSRLAESTAGPDARIVPLHLADSALVD-LVRVGDVVDV-LAAPVTDSPAA 164

Query: 167 VTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTPMQAK 205
           + ++ ++  V+ +         DSD  VLV   A L  T   A 
Sbjct: 165 LRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAA 208


>gi|215429850|ref|ZP_03427769.1| hypothetical protein MtubE_04012 [Mycobacterium tuberculosis
           EAS054]
 gi|289753048|ref|ZP_06512426.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289693635|gb|EFD61064.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
          Length = 218

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 28/199 (14%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
           +    ++AG+ A+R             +        V+++  DL  G  +TP  +     
Sbjct: 33  AAGLVILAGVAALR-------------SNPEDDRAEVVVAAHDLRPGTALTPGDVRLEKR 79

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131
               + DG   D      +  + G  +  P  +G+ +   +L+  G+    S      R 
Sbjct: 80  SATTLPDGSQAD------LDAVVGSTLASPTRRGEVLTDVRLL--GSRLAESTAGPDARI 131

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-----DHNIDSD 186
             + ++ S+ V  +++  D VDV +   +++    + ++ ++  V+ +         DSD
Sbjct: 132 VPLHLADSALVD-LVRVGDVVDV-LAAPVTDSPAALRLLATDAIVVLVSAQQKAQAADSD 189

Query: 187 ERVLVGSTATLELTPMQAK 205
             VLV   A L  T   A 
Sbjct: 190 RVVLVALPARLANTVAGAA 208


>gi|31792181|ref|NP_854674.1| hypothetical protein Mb1017c [Mycobacterium bovis AF2122/97]
 gi|121636917|ref|YP_977140.1| hypothetical protein BCG_1045c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215402806|ref|ZP_03414987.1| hypothetical protein Mtub0_03760 [Mycobacterium tuberculosis
           02_1987]
 gi|215410589|ref|ZP_03419397.1| hypothetical protein Mtub9_04524 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426268|ref|ZP_03424187.1| hypothetical protein MtubT9_07731 [Mycobacterium tuberculosis T92]
 gi|215445138|ref|ZP_03431890.1| hypothetical protein MtubT_04052 [Mycobacterium tuberculosis T85]
 gi|224989389|ref|YP_002644076.1| hypothetical protein JTY_1017 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260185899|ref|ZP_05763373.1| hypothetical protein MtubCP_07697 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200017|ref|ZP_05767508.1| hypothetical protein MtubT4_07787 [Mycobacterium tuberculosis T46]
 gi|289442410|ref|ZP_06432154.1| hypothetical protein TBLG_03153 [Mycobacterium tuberculosis T46]
 gi|289446571|ref|ZP_06436315.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289744726|ref|ZP_06504104.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749518|ref|ZP_06508896.1| hypothetical protein TBDG_01743 [Mycobacterium tuberculosis T92]
 gi|289757073|ref|ZP_06516451.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294995178|ref|ZP_06800869.1| hypothetical protein Mtub2_11847 [Mycobacterium tuberculosis 210]
 gi|298524484|ref|ZP_07011893.1| hypothetical protein TBAG_03051 [Mycobacterium tuberculosis
           94_M4241A]
 gi|31617769|emb|CAD93878.1| HYPOTHETICAL PROTEIN Mb1017c [Mycobacterium bovis AF2122/97]
 gi|121492564|emb|CAL71032.1| Hypothetical protein BCG_1045c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224772502|dbj|BAH25308.1| hypothetical protein JTY_1017 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289415329|gb|EFD12569.1| hypothetical protein TBLG_03153 [Mycobacterium tuberculosis T46]
 gi|289419529|gb|EFD16730.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289685254|gb|EFD52742.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690105|gb|EFD57534.1| hypothetical protein TBDG_01743 [Mycobacterium tuberculosis T92]
 gi|289712637|gb|EFD76649.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494278|gb|EFI29572.1| hypothetical protein TBAG_03051 [Mycobacterium tuberculosis
           94_M4241A]
 gi|326904784|gb|EGE51717.1| hypothetical protein TBPG_02700 [Mycobacterium tuberculosis W-148]
          Length = 218

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 15/177 (8%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
              + +        V+++  DL  G  +TP  +         + DG   D      +  +
Sbjct: 42  VAALRSNPEDDRAEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LDAV 95

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
            G  +  P  +G+ +   +L+  G+    S      R   + ++ S+ V  +++  D VD
Sbjct: 96  VGSTLASPTRRGEVLTDVRLL--GSRLAESTAGPDARIVPLHLADSALVD-LVRVGDVVD 152

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTPMQAK 205
           V +   +++    + ++ ++  V+ +         DSD  VLV   A L  T   A 
Sbjct: 153 V-LAAPVTDSPAALRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAA 208


>gi|257793127|ref|YP_003186525.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479819|gb|ACV60136.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 261

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 17/105 (16%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
              L+   +A+ L        + ++ E     + + ++   +     +TP+ + W   P 
Sbjct: 10  GLGLLGVGVAVWL--------DWMVLERAHATVEIPVASQTILPYTTITPSDITWKPVPR 61

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             V    + +           G L  + +  GDPI   +L  +G+
Sbjct: 62  AAVPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGS 97


>gi|328953564|ref|YP_004370898.1| N-acetylneuraminate synthase [Desulfobacca acetoxidans DSM 11109]
 gi|328453888|gb|AEB09717.1| N-acetylneuraminate synthase [Desulfobacca acetoxidans DSM 11109]
          Length = 347

 Score = 47.6 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  D+  G  +TP +LE    PE  V   ++D            G + + P+   + I
Sbjct: 293 LVANQDIPQGTKLTPEMLEGKR-PEPGVSPEYLDF---------FVGRVTKRPLKYNEAI 342

Query: 109 RLEKL 113
             + +
Sbjct: 343 SWDDI 347


>gi|296128692|ref|YP_003635942.1| SAF domain protein [Cellulomonas flavigena DSM 20109]
 gi|296020507|gb|ADG73743.1| SAF domain protein [Cellulomonas flavigena DSM 20109]
          Length = 235

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 53/171 (30%), Gaps = 21/171 (12%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
             D+  G  +T + L  V  P      G         A  +  G +  V +    P+   
Sbjct: 74  AHDVPAGTALTAHDLVLVDVPVGTAPGGAFR------APDDALGQVPAVDLPARLPLTPS 127

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171
            L D    G     P G     + +    AV  ++ P  H+D+V  R           V 
Sbjct: 128 VLADAQLAG-----PDGTVVVAVRLDD-PAVAALLAPGLHLDLVAARLEGGPG---ETVA 178

Query: 172 SNIRVIAIDHNIDSDER------VLVGSTATLELTPMQAKALVAAQSVAKL 216
               V +                V V +   + +TP +A  +  A   ++L
Sbjct: 179 RRALVRSAPGVAPEGGGLLGAPAVDVAAPVLVAVTPQEAVRIAEASVSSRL 229


>gi|323343128|ref|ZP_08083359.1| hypothetical protein HMPREF0357_11540 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463192|gb|EFY08387.1| hypothetical protein HMPREF0357_11540 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 213

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 81/193 (41%), Gaps = 19/193 (9%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
           E++T    +F  V     DL     +  + LE ++ PE+ + +  I +       + + G
Sbjct: 7   EIMTRIRCRFEKVYRLNTDLTQREKIEDHHLEEISLPEKGINEFMIRN------KENVIG 60

Query: 96  VLVR--VPILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
             V+    + KG  +        D   G    LL   +   + + S+ +  G +++  D+
Sbjct: 61  RYVKLGHTVYKGQIVDRRDFEHFDDARGKPLLLLEPEEVLMSAEASMVNTGGNVLRAGDY 120

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAI----DHNIDSDERVLVGSTATLELTPMQAKAL 207
           V++ +     +    +  +L  +RV+ +     H I++ ++  V S A     P + +++
Sbjct: 121 VNLSVKLREFDGGSRIMPLLKGVRVVNVRDRDGHEIEAGKQPSVFSFA----IPQKIESI 176

Query: 208 VA-AQSVAKLSLV 219
           +  A  +  LS+V
Sbjct: 177 IHKAIEIGDLSVV 189


>gi|227504186|ref|ZP_03934235.1| SAF domain protein [Corynebacterium striatum ATCC 6940]
 gi|227199230|gb|EEI79278.1| SAF domain protein [Corynebacterium striatum ATCC 6940]
          Length = 226

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 33/231 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           + + L+  V++ V  + AG+ A+                   +    ++   D+  G  +
Sbjct: 16  RRSLLVRRVLAAVLIIGAGLSALH---------------ARRELPQAVVFARDVPAGSTL 60

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR----G 117
               L     P   + D  +D       +++L+G +V      G+ +   +L+       
Sbjct: 61  QAEDLTLAPVPSHILPDSAVDT-----DLEKLEGRVVVAAAASGELVTDARLLSPELVDN 115

Query: 118 NGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLS 172
               S+L   G+ +  + +      +   +   D V+V+   S S+      P  +V+ +
Sbjct: 116 LVNNSTLNTSGEESHMIPLKLAEPDILPHLHHGDTVNVIAGNSNSDLIGTTSPAGSVIAA 175

Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
             RV+A   + D ++     ST  L L   QA A+ +A     L++V+   
Sbjct: 176 GGRVVATTSSRDGED----ASTLLLALPASQADAVASASLSQPLTVVIVGQ 222


>gi|261251282|ref|ZP_05943856.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
 gi|260938155|gb|EEX94143.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
          Length = 258

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 31/234 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M  T ++ +V   +F++    I    +S    + E+VI   P   + VL+  G+   G +
Sbjct: 1   MNRTIILVLVTLVIFSIFI-FINNTYLSSTGEEQEKVIKSEPK--VAVLVVSGEAKKGQI 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  +I +        V      D    + +    G L +  +  G+ I  E + + G+  
Sbjct: 58  IKSSIHKSELVNLSQVES---VDYTPKDEIHIEPGALFKRDLNPGELISQEDISNPGDRD 114

Query: 121 LSSL-LPKGKRAATMDISISSAVGGM-IKPNDHVDVVMVRSLSE----------RKPTVT 168
              L + KG+      ++    V  + + P D V  V   S                   
Sbjct: 115 YMFLSVNKGELPYFYHVTGLGIVQTLSLYPGDKVSFVSTTSSETNLLEDGYGDVGGLVSR 174

Query: 169 VVLSNIRVIAI--------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
           V++S  RV+ +          + +  +  +V     + L       L  AQ V 
Sbjct: 175 VIISGARVLQVIKGEEDEDAQDAEDKQYSIV-----VALRMRDVLKLEMAQKVG 223


>gi|296135677|ref|YP_003642919.1| flagella basal body P-ring formation protein FlgA [Thiomonas
           intermedia K12]
 gi|295795799|gb|ADG30589.1| flagella basal body P-ring formation protein FlgA [Thiomonas
           intermedia K12]
          Length = 242

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 20/117 (17%)

Query: 27  VSPHHVQTEEVITENPA-----------KFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
            +P+  QT EV    P+           +   V++    L  G V+T   L  V      
Sbjct: 86  ANPYGAQTVEVRCTAPSVWSLYLPVRVDRPQGVVVVARALQAGHVLTAADLTTVERDAAR 145

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG---NGGLSSLLPKGK 129
           +  G + D       Q L G ++R  +  G P+    L        G   SL+ +G 
Sbjct: 146 LPPGAVTDA------QALVGQVLRYSVAAGQPLVQSMLTGPQLVHYGQSVSLIAQGM 196


>gi|209967011|ref|YP_002299926.1| N-acetylneuraminic acid synthase [Rhodospirillum centenum SW]
 gi|209960477|gb|ACJ01114.1| N-acetylneuraminic acid synthase [Rhodospirillum centenum SW]
          Length = 365

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 24  MRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
            R+     V+      E P  K    +++  DL  G V+    L + A P + +      
Sbjct: 272 ARIALGDGVKRRYPSEEKPLYKMAKKIVAARDLPAGHVLAQEDLAFKA-PNDGLP----- 325

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
               P     L G+ +  P+ + + I    L         +++P
Sbjct: 326 ----PYHADHLVGMRLTRPLAEDEAIGYADLTSEDAPASPAVVP 365


>gi|146297616|ref|YP_001181387.1| SAF domain-containing protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145411192|gb|ABP68196.1| SAF domain protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 219

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 17/141 (12%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
            +N   F N++++  D+  G  +T + L  V              +       E+    V
Sbjct: 33  KKNQGLFENIIVASMDIKKGEKITQDKLALVRV-------AAPTPIPAAKNPVEVLNKYV 85

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
              I +G+PI   KL  +    +S    KG+ +  + I    +    I   D V ++ V 
Sbjct: 86  LYDIKRGEPIIPAKLTVKPPIDVS----KGQYSMLIKIEPVPST--FIAKYDTVRLMFVS 139

Query: 159 ---SLSERKPTVTVVLSNIRV 176
                  +KP++  +L  ++V
Sbjct: 140 NAVDAKTQKPSIQ-ILDTVQV 159


>gi|134298813|ref|YP_001112309.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051513|gb|ABO49484.1| SAF domain protein [Desulfotomaculum reducens MI-1]
          Length = 215

 Score = 47.2 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 38/226 (16%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
           GI++S + +LV     +   +  +            K + V      +  G  +T + ++
Sbjct: 6   GIIISLILSLVFTGAVIFSSNTKYAAA--------TKTVEVAAVNQYIPAGKKITKDDIK 57

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
               PE+         ++      ++ G  + V ++K   I  +K + +G         +
Sbjct: 58  MDRVPEKMA-------INLVQKADDVVGKTILVSLVKDQYI-WKKAIAQGEAK-----KE 104

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI-AIDH---NI 183
           G     +   + S+    +   + VD+ +V S    +    ++    RV+ ++D     I
Sbjct: 105 GYIQVFIPTDLPSSAC--VIAGEVVDIYLV-SKGGIESNSGLIYKGARVLNSLDQSGNEI 161

Query: 184 DSDERVLVGS----------TATLELTPMQAKALVAAQSVAKLSLV 219
           D   +  V            T  +E+  + A  +V A S  ++ LV
Sbjct: 162 DPARKNEVSQMAVNGSKVPVTVGVEVPEIVAPVIVQACSKKEIYLV 207


>gi|28900575|ref|NP_800230.1| hypothetical protein VPA0720 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365455|ref|ZP_05777992.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877520|ref|ZP_05889875.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260897539|ref|ZP_05906035.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|260901741|ref|ZP_05910136.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|28808955|dbj|BAC62063.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087131|gb|EFO36826.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|308090892|gb|EFO40587.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308108967|gb|EFO46507.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308114362|gb|EFO51902.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|328470517|gb|EGF41428.1| pilus assembly protein CpaB [Vibrio parahaemolyticus 10329]
          Length = 250

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 72/238 (30%), Gaps = 42/238 (17%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M   +  VF  +   +A   VS    Q E V       F+ V      +     V  + +
Sbjct: 1   MSRALIFVFVAITMFLAFFYVSDFFDQPEPVAVVENEVFVQVAFVNRTVNKADPVNIDAI 60

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +   F E               +++   G L    + +G  +    + + G      L  
Sbjct: 61  DIREFSESEAKQHSYT---PYTSIKIESGALWAKDVTEGTQLTSNLVSNPGEKDYMYL-- 115

Query: 127 KGKRAATMDISIS---------SAVGGM-IKPNDHVDVVMVRSLSER----------KPT 166
                 ++              S V  + I+P D V  V   S                T
Sbjct: 116 ------SLKKDQVPYYYLSQGSSIVEALPIQPGDRVSFVATTSSQSNLLESGYSDIDSLT 169

Query: 167 VTVVLSNIRVI-AI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
             V++    V+ A+    D + + D  +++  T        Q   L  AQ +  ++LV
Sbjct: 170 SNVIIDGALVLQAMNVSEDDSSNEDYGLIIALTV------KQVLKLEMAQKIGAITLV 221


>gi|253577450|ref|ZP_04854765.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843150|gb|EES71183.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 377

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 17/128 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMR-----------LVSPHHVQTEEVITENPAKFINVLI 50
           K   ++ I  S V  LV+ I  ++           + + +  Q E++ T        +L+
Sbjct: 9   KPIVIIAIGFSFVLLLVSTIFVLQHQAQQKRLQQQMRAHYEQQIEQLKTNEQQGKTRILV 68

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +   +  G  +    ++ V      V      D         + G + ++ +    P+  
Sbjct: 69  AARPIPAGKTLGNGDIQAVEVVHALVPSDSFKDPQM------VVGKIAKIDLQSNTPLIA 122

Query: 111 EKLVDRGN 118
             L + G 
Sbjct: 123 SMLYEEGA 130


>gi|126437236|ref|YP_001072927.1| SAF domain-containing protein [Mycobacterium sp. JLS]
 gi|126237036|gb|ABO00437.1| SAF domain [Mycobacterium sp. JLS]
          Length = 218

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
            ++     ++V+++  DL  GM +  + +     P   V DG   D         + G+ 
Sbjct: 44  RSDPDGDQVDVVVAATDLTPGMDLAESDVRVERRPLTTVPDGAAKDP------TAVIGMT 97

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           V  P  +G+ +   +L+       ++      R  ++ ++  + V  +++  D VDV+
Sbjct: 98  VAGPTRRGEVLTDLRLLGPRIAEAAA--GPDARIVSLQLADGALVD-LVRTGDVVDVL 152


>gi|218886984|ref|YP_002436305.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757938|gb|ACL08837.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 354

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           +V P  +   E            L++   +A G V+T + L W   P   V         
Sbjct: 276 MVGPFTISALESEAPARRNARRSLVAARPIAAGAVITRDDLTWKR-PAHGVS-------- 326

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKL 113
            P  +  + G   R  I +   ++   L
Sbjct: 327 -PREIDAVLGKRARADIAEDTVLQWSHL 353


>gi|256824730|ref|YP_003148690.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547]
 gi|256688123|gb|ACV05925.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547]
          Length = 219

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 18/161 (11%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++  DL  G V+    L  V   E +  +G       P  + +  G +V  P+ +G+ + 
Sbjct: 48  VAAADLPTGHVLGSEDLRPV---EGSSPEGVYLTGDDP--LADRAGQVVLRPVGQGEFLP 102

Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPT 166
           +  L       L        R  ++++S        + P   VD+       +  +++PT
Sbjct: 103 VADLGGADRLDL--------RRVSLEVSP--GSAATLSPGSVVDLWATPRAVAGEKKRPT 152

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207
              VL+   V  +    D              ++  Q + L
Sbjct: 153 PRQVLAGAEVARVQEAGDRLAGGDQTVAVDFLVSTDQVEEL 193


>gi|153836372|ref|ZP_01989039.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149750274|gb|EDM61019.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 251

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 69/234 (29%), Gaps = 33/234 (14%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M   +  VF  +   +A   VS    Q E V       F+ V      +     V  + +
Sbjct: 1   MSRALIFVFVAITMFLAFFYVSDFFDQPEPVAVVENEVFVQVAFVNRTVNKADPVNIDAI 60

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +   F E              N      G L    + +G  +    + + G      L  
Sbjct: 61  DIREFSESEAKQHSYTPYTSINIES---GALWAKDVTEGTQLTSNLVSNPGEKDYMYL-- 115

Query: 127 KGKRAATMDISIS---------SAVGGM-IKPNDHVDVVMVRSLSER----------KPT 166
                 ++              S V  + I+P D V  V   S                T
Sbjct: 116 ------SLKKDQVPYYYLSQGSSIVEALPIQPGDRVSFVATTSSQSNLLESGYSDIDSLT 169

Query: 167 VTVVLSNIRVI-AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
             V++    V+ A++ + D D          + LT  Q   L  AQ +  ++LV
Sbjct: 170 SNVIIDGALVLQAMNVSEDDDSSNEDYGLI-IALTVKQVLKLEMAQKIGAITLV 222


>gi|258510599|ref|YP_003184033.1| SAF domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477325|gb|ACV57644.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 261

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
           ++ E     + + ++   +     +TP+ + W   P   V    + +           G 
Sbjct: 25  MVLERAHATVEIPVASQTILPYTTITPSDITWKQVPRAAVPSDLVTNP---------VGR 75

Query: 97  LVRVPILKGDPIRLEKLVDRGN 118
           L  + +  GDPI   +L  +G+
Sbjct: 76  LTVLGVAAGDPIESSELAAQGS 97


>gi|159901123|ref|YP_001547370.1| hypothetical protein Haur_4611 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894162|gb|ABX07242.1| hypothetical protein Haur_4611 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 363

 Score = 46.0 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 46/216 (21%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE------VITENPAKFINVLISKGD 54
           M+    +G++++ V  + A       ++                T  P   + +L +  D
Sbjct: 1   MRQNPALGMILAVVVLIAALAGGYVYLTNQQKSQTSGDPSLLEPTNMPVPNVQILEAATD 60

Query: 55  LAVGMVVTPNILEW----VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +    ++T   LE     +  P  +V     DDV        + G +    I  G+ I+ 
Sbjct: 61  IEANKLITGADLEQYFNPLEVPPSDVTP---DDVLYTEFYSVVQGKVTTTDIRGGERIKK 117

Query: 111 EKLVDRGNGGLSSLLP------KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER- 163
                  N G++  LP      +  +A  M +S     GG++   +++D++   SL +  
Sbjct: 118 STF---RNAGIAEKLPIPVAGEESLKAYNMFVSDI---GGIVAEGNNIDILGSYSLEQPY 171

Query: 164 --------------------KPTVTVVLSNIRVIAI 179
                                 +  V+  N+ V+ +
Sbjct: 172 LRFTGIDKDGIITLVDEKYLDISTHVLAQNVPVLKV 207


>gi|10956304|ref|NP_052753.1| hypothetical protein pxo1_57 [Bacillus anthracis]
 gi|4894273|gb|AAD32361.1| pXO1-57 [Bacillus anthracis]
          Length = 142

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 12/117 (10%)

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGNGGLSSLL- 125
              P + +    +         +E+ G       PI +   +   K+V +     S++L 
Sbjct: 3   RTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEELPDSAILN 57

Query: 126 -PKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSNIRVIA 178
              G+ A  + +   ++ G  I PN +VD+    +V+     K     +   +RV A
Sbjct: 58  LKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQRVRVTA 114


>gi|254823442|ref|ZP_05228443.1| hypothetical protein MintA_26166 [Mycobacterium intracellulare ATCC
           13950]
          Length = 216

 Score = 46.0 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
               +  V+++  DL  G  +T   +         V DG   DV        + G  +  
Sbjct: 39  PAGDYTQVVVADHDLRPGNALTAADVRIEKRLASTVPDGARADV------GAVVGSTLAG 92

Query: 101 PILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--- 155
           P  +G+ +   +L+        + S    G R   + ++   A+  +++  D VDV+   
Sbjct: 93  PARRGEVLTDVRLLGNRLAEAAIGSKAGPGARIVPLHLAD-GALIDLVRAGDVVDVLAAP 151

Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA- 214
              +         VV ++  V+ +  +     +        L   P +    VA  ++  
Sbjct: 152 ATGTPETAHAAPRVVATDAVVVLV--SAKEKLQSADADRVVLVALPARVANTVAGSALGQ 209

Query: 215 KLSLVL 220
            ++L L
Sbjct: 210 TVTLTL 215


>gi|309811232|ref|ZP_07705024.1| SAF domain protein [Dermacoccus sp. Ellin185]
 gi|308434844|gb|EFP58684.1| SAF domain protein [Dermacoccus sp. Ellin185]
          Length = 760

 Score = 45.7 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  D+A G  +T   +   +        G      QPN ++ L G  +R PI  GD  
Sbjct: 408 LVATRDIAAGEKLTRADVTIKS-------PG---RGLQPNRLEALVGRTMRRPIESGDFF 457

Query: 109 RLEKLVDRGNGGLSS 123
               L D    G + 
Sbjct: 458 YATDLTDAVAHGRAY 472


>gi|134298691|ref|YP_001112187.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051391|gb|ABO49362.1| SAF domain protein [Desulfotomaculum reducens MI-1]
          Length = 270

 Score = 45.7 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSA 141
           D +    +QE++G +    ++ G+ IR +KL +        LL  G+   T+ I     A
Sbjct: 76  DPYAVKTLQEIEGKVAVTDLIPGEQIRPDKLANTD-----ILLQPGEAFVTVRIEKPEQA 130

Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL 197
           + G I+ N  V+V+     +      +V+    RV+++      DE +    TA++
Sbjct: 131 LAGQIRANSIVNVMWTAGPNSP---SSVLAEKARVMSL-----MDEGLKPVHTASV 178


>gi|256372256|ref|YP_003110080.1| hypothetical protein Afer_1484 [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008840|gb|ACU54407.1| hypothetical protein Afer_1484 [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 231

 Score = 45.7 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R + + ++G  AL A +                     ++ ++++++   L  G V 
Sbjct: 5   RQRRSVALKIAGTVALGAAVTLGVYSFFS----------KQSQTVDIVVAAKPLVPGEVP 54

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           T + L   A P+++V  G I        ++ L+  +V   I +  P+ + +L     G 
Sbjct: 55  TKSDLAVEAVPQQSVTPGMI----PVANVRVLNNQVVTTTIPQNAPVLVSELAPHLRGN 109


>gi|269217390|ref|ZP_06161244.1| Flp pilus assembly protein CpaB family protein [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269213171|gb|EEZ79511.1| Flp pilus assembly protein CpaB family protein [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 195

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 67/165 (40%), Gaps = 25/165 (15%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M + V+ + +L A +  +R ++P                ++V+++K DL  G  +  + L
Sbjct: 1   MLLAVAVLTSLAAILSTIRGLAPA--------------TVSVVVAKKDLTPGTALGSSNL 46

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
                  E   +G         ++++L+  ++   + KG P+  +  +   +  L+S  P
Sbjct: 47  TIAEVSAELAPEGLTR------SLEDLNERVLITSVPKGAPVTRK--MTLSDDFLASA-P 97

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTVV 170
           +G   A + ++       ++ P   V +       S+ +  V +V
Sbjct: 98  EGTEIAPV-VADVGGADKLLTPGRTVALYAPPGEHSKAREAVKIV 141


>gi|297626968|ref|YP_003688731.1| hypothetical protein PFREUD_18030 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922733|emb|CBL57311.1| Hypothetical protein PFREUD_18030 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 211

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 19/180 (10%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+I+   LA G+ V  + +  +  P E      + D           G +V VP   G 
Sbjct: 46  TVVIASRPLAAGVAVGADDVTTLQVPAEVATSATLADP------GAAIGQVVAVPRPAGT 99

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +     V +G    S     G       I     V G++   + + VV     +     
Sbjct: 100 VLTSSDFVGKGLVADS----DGLTLVPFRIED-KGVAGVLGVGNQISVV----GANPGAD 150

Query: 167 VTVVLSNIRVIAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
             V+ S +R+ A+          D     G+   +      A+ L AA S   LS+VL S
Sbjct: 151 TRVIASRVRIAALPSPGSSGALDDSSSSSGALVIVAADSHTARELAAAASEYTLSVVLES 210


>gi|170742324|ref|YP_001770979.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           sp. 4-46]
 gi|168196598|gb|ACA18545.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           sp. 4-46]
          Length = 347

 Score = 45.3 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           LV+    Q    ++    + + V +    LA G  V P  +     P +      + D  
Sbjct: 187 LVTVGERQASLRVSGQVIEMVEVAVLARPLARGETVGPQDVTLERRPRDAAPPDGVADAA 246

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
                  L G + +  +  G P+R   L    
Sbjct: 247 S------LVGQVAQRALAPGQPLRSADLARPD 272


>gi|302668530|ref|YP_003832978.1| SAF domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302397494|gb|ADL36396.1| SAF domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 314

 Score = 45.3 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 37/187 (19%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPH-----HVQTEEVITENPAKFINVLISKGDLA 56
           K   ++ I+V+ +  ++AG IA+  V          Q +E+  E  A  + V ++K D++
Sbjct: 5   KFKLIISILVAVLI-ILAGCIAIIYVGKKTLDEKKAQIDELQYEIDANKLVVYVAKNDIS 63

Query: 57  VGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
            G  +     +           + ++ D           G +  + I   +PI  + +  
Sbjct: 64  AGETLVDGENIMKQEIFTGLESEYYLSDSE--------VGGIAVLDIKALEPIMADMVT- 114

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN---DHVDVVMVRSLSE------RKPT 166
                 S  + +  R          AV  ++      D+VDV ++    E      +KP 
Sbjct: 115 ------SLQIQQDTR------EYEIAVANLMTDQDEYDYVDVRIMFPTGEDYTVLTKKPV 162

Query: 167 VTVVLSN 173
             ++L N
Sbjct: 163 HNLILDN 169


>gi|23466106|ref|NP_696709.1| hypothetical protein BL1553 [Bifidobacterium longum NCC2705]
 gi|23326839|gb|AAN25345.1| hypothetical protein BL1553 [Bifidobacterium longum NCC2705]
          Length = 220

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 43/224 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R +   +    A++ G+ A+  V                +   ++++   +  G ++ 
Sbjct: 35  ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 79

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117
              ++    P   +   +         ++++ G + ++ I   DPI     R   +   G
Sbjct: 80  AADVQLADMPVSAIGPSW------ACNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 133

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L          +             D V +V              +  N  V+
Sbjct: 134 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 176

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +D    +          +  + P  A  ++  Q    +  V+R
Sbjct: 177 NVDKPDTTGALGSNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 220


>gi|300741834|ref|ZP_07071855.1| SAF domain protein [Rothia dentocariosa M567]
 gi|300381019|gb|EFJ77581.1| SAF domain protein [Rothia dentocariosa M567]
          Length = 236

 Score = 44.9 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 30/145 (20%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +K D+++G  +TP++L        +  D ++      +        +    I  G+ I  
Sbjct: 61  AKNDISIGQKITPDMLIEKQVNLGDSKDRYLSREQLESGKY-----IAVRQIPAGELIS- 114

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---- 166
                  +      + + +R  T+ +     +   +K  + VD+ ++ S  E++      
Sbjct: 115 -------SASAHENIQERRRLVTVTLDR--GIASTLKAGERVDIWVISSGKEKQKVPEGE 165

Query: 167 ---------VTVVLSNIRV--IAID 180
                       ++ N  +  IA+D
Sbjct: 166 GKNEDNESEQKPLVQNAEISTIAVD 190


>gi|294339847|emb|CAZ88210.1| putative Flagella basal body P-ring formation protein flgA
           [Thiomonas sp. 3As]
          Length = 244

 Score = 44.9 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 20/117 (17%)

Query: 27  VSPHHVQTEEVITENPA-----------KFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
            +P+  QT EV    P+           +   V++    L  G V+T   L  V      
Sbjct: 88  ANPYGAQTVEVRCTAPSVWSLYLPVRVDRPQGVVVVARALQAGHVLTAADLTMVERDATR 147

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG---NGGLSSLLPKGK 129
           +  G + D       Q L G ++R  +  G P+    L        G   SL+ +G 
Sbjct: 148 LPPGAVTDA------QALVGQVLRYSVAAGQPLAQSMLTGPQLVHYGQSVSLIAQGM 198


>gi|325295400|ref|YP_004281914.1| flagella basal body P-ring formation protein FlgA
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065848|gb|ADY73855.1| flagella basal body P-ring formation protein FlgA
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 321

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           I+  D+  G ++T + ++    P +      I       ++ E+ G + +  I KG+ I+
Sbjct: 200 IAVKDIPKGKLITYSDVKIEKVPSKKARKSAI-------SLNEVIGKIAKRDIKKGEVIK 252

Query: 110 LEKLVDR 116
           +  L   
Sbjct: 253 ITDLSPN 259


>gi|154253002|ref|YP_001413826.1| flagellar basal body P-ring biosynthesis protein FlgA [Parvibaculum
           lavamentivorans DS-1]
 gi|154156952|gb|ABS64169.1| SAF domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 326

 Score = 44.5 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A    +R  +   +     +T      ++V +   D+  G +V    ++WV  P   V 
Sbjct: 157 GAFTAIVRAPAHDALSPLRRVTGRAYPVLDVPVLVRDMQPGDIVRHQDIDWVRMPANRVS 216

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
              I       ++  L G+  R P   G+P+RL  +   
Sbjct: 217 QNMI------ASIDHLVGMSPRHPARAGEPLRLSDMQPP 249


>gi|311740868|ref|ZP_07714695.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304388|gb|EFQ80464.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 230

 Score = 44.5 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 27/192 (14%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
            +   V +   DL  G  +    ++    P  ++ D  +         +EL G ++    
Sbjct: 40  KELPRVPVFSRDLPAGAELALADVDLARLPSSSIPDSAV-----AAKPEELTGRVITAAA 94

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLP----KGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
            KG+ I   +L+  G   +SSL+        R   + +     +   +   D VDVV   
Sbjct: 95  GKGEVITDARLL--GEELVSSLVGGSEDAAARMIPVKL-AEPDIIPHLHHGDTVDVVTAV 151

Query: 159 S--------LSERKPTVTVVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKAL 207
                         PT        RVIA    +    + E     ST  L L    A  +
Sbjct: 152 DAASSPSDVGEGEAPTAPT----ARVIATGGRVVSTSNAEGEASSSTVLLALPHDHANDV 207

Query: 208 VAAQSVAKLSLV 219
            AA     L++V
Sbjct: 208 AAASLSQPLTVV 219


>gi|52425835|ref|YP_088972.1| hypothetical protein MS1780 [Mannheimia succiniciproducens MBEL55E]
 gi|52307887|gb|AAU38387.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 258

 Score = 44.5 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 13/179 (7%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLV--SPHHVQTEEVITE-NPAKFINVLIS--KGDLAVGM 59
           R++  +   + A+    +   L   SP+  Q +    +  P   I++LI+     +  G 
Sbjct: 4   RVLFFISFLILAMGLSGLFFMLPEESPNTPQQQTTSEKTAPKSQISILIAQTTRQIPQGT 63

Query: 60  VVTPNI--LEWVAFPEENVFDGF-IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           ++      L  +    ++    F +      N    L G L +  +  G  +  + L+  
Sbjct: 64  LLQAEDYALSELTVDSDDARANFDLKAWLANNENSSLQGYLAKQTLQVGSFLSPDLLLSP 123

Query: 117 GNGG--LSSLLPKGKRAATMDISISSA-VGGMIKPNDHVDVVMVR--SLSERKPTVTVV 170
            +    LSSL P  + A  + I   +  +   ++   HV V   +       K    ++
Sbjct: 124 QHPDYLLSSLDPMQEVAYRIYIKAENGYIFDTLRAGSHVSVGSQQIAGGKNNKERTELI 182


>gi|304405122|ref|ZP_07386782.1| SAF domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304346001|gb|EFM11835.1| SAF domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 240

 Score = 44.1 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 54/155 (34%), Gaps = 18/155 (11%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
             +         + +++ K  +A G  +    L + +  +  V    + ++ + +  + +
Sbjct: 26  AVQARQLEGKDMVRIVVPKRFIAAGERLEAADLTYRSIAKSAVQQDMVLELVEADGWEAV 85

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG--KRAATMDISISSAVGGMIKPNDH 151
                 VP+   +P+   KL           L     +    +  S   +V   I+    
Sbjct: 86  ------VPLGAEEPLLKWKLDR-------YRLLPDQSQSTFQIPRSYVLSVSNGIRAG-- 130

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
            D+V++    E   +  +    ++V ++    +++
Sbjct: 131 -DLVVLYMSGEADSSSRLFDKPVKVASVKSAANTE 164


>gi|197120087|ref|YP_002140514.1| N-acetylneuraminic acid synthase-like protein [Geobacter
           bemidjiensis Bem]
 gi|197089447|gb|ACH40718.1| N-acetylneuraminic acid synthase-related protein [Geobacter
           bemidjiensis Bem]
          Length = 338

 Score = 43.7 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++   L  G  +T   +            GF      P   +EL G ++  P+ + + I
Sbjct: 283 IVAARALPAGHRLTAEDIAVKR-------PGF---GIPPRFREELPGSVLNEPVEQDEVI 332

Query: 109 RLEKL 113
              KL
Sbjct: 333 PWSKL 337


>gi|220905152|ref|YP_002480464.1| N-acetylneuraminate synthase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869451|gb|ACL49786.1| N-acetylneuraminate synthase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 356

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           L A + ++  +S   +  EE   ++  +    L++   +  G  VT   L W   P   +
Sbjct: 267 LNATLASVGDLSLRALPEEEPARQHARRS---LVTARAIPAGTPVTAADLTWKR-PAHGI 322

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                     P    E+ G+  R  + +   +    L
Sbjct: 323 S---------PRNYDEVLGMRARHDLAEDTVLHWSDL 350


>gi|255325459|ref|ZP_05366563.1| SAF domain protein [Corynebacterium tuberculostearicum SK141]
 gi|255297545|gb|EET76858.1| SAF domain protein [Corynebacterium tuberculostearicum SK141]
          Length = 230

 Score = 43.3 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 66/216 (30%), Gaps = 27/216 (12%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
             ++   +     +           +   V +   DL  G  +    ++    P  ++ D
Sbjct: 16  GVVVRRAIAVALLIAALASALSAAKELPRVPVFSRDLPAGAELALADVDLARLPSSSIPD 75

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
             +         +EL G ++     KG+ I   +L+      L S L  G  AA   +  
Sbjct: 76  SAV-----AAKPEELTGRVITAAAGKGEVITDARLLGEE---LVSSLVGGSEAAAARMIP 127

Query: 139 SSAVGGMIKP----NDHVDVVMVRS--------LSERKPTVTVVLSNIRVIAIDHNI--- 183
                  I P     D VDVV                 PT        RVIA    +   
Sbjct: 128 VKLAEPDIIPHLHHGDTVDVVTAVDAASSPSDVGEGEAPTAPT----ARVIATGGRVVST 183

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            S E     ST  L L    A  + AA     L++V
Sbjct: 184 SSAEGEASSSTVLLALPHDHANDVAAASLSQPLTVV 219


>gi|208701981|ref|YP_002267168.1| SAF domain protein, putative [Bacillus cereus H3081.97]
 gi|228943661|ref|ZP_04106082.1| hypothetical protein bthur0008_62160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228956198|ref|ZP_04118081.1| hypothetical protein bthur0006_54880 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|332287970|ref|YP_004169156.1| hypothetical protein pBMB0558_00225 [Bacillus thuringiensis CT43]
 gi|208658273|gb|ACI30639.1| SAF domain protein, putative [Bacillus cereus H3081.97]
 gi|228803515|gb|EEM50251.1| hypothetical protein bthur0006_54880 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228816013|gb|EEM62217.1| hypothetical protein bthur0008_62160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|315273042|gb|ADU03111.1| hypothetical protein pBMB0558_00225 [Bacillus thuringiensis serovar
           chinensis CT-43]
 gi|326943372|gb|AEA19267.1| SAF domain protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 249

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           ++M ++    V + E++ ++     +V+++K D+     +T + ++ V+  ++      +
Sbjct: 13  VSMMVLGIGTVGSYELVFKDKINTTDVIVAKQDIKFKSEITKDDIKVVSVRKDI----AV 68

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
            D  +P  +Q L      + I KG  I   KLVD
Sbjct: 69  HDALKPEDVQLLLNKHASIDIKKGTQIY-SKLVD 101


>gi|114321516|ref|YP_743199.1| N-acetylneuraminate synthase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227910|gb|ABI57709.1| N-acetylneuraminate synthase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 348

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 10/88 (11%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           +S    +          +    +++  DL  G  +    L +   P   V          
Sbjct: 271 MSRPAAEITAAEESARTQARRSVVAATDLPAGTTLAAGHLAYKR-PGTGVP--------- 320

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLV 114
           P   ++L G  + V +   + I  +KL 
Sbjct: 321 PTQAEDLIGRRLAVDLAHDELITPDKLA 348


>gi|261856134|ref|YP_003263417.1| flagella basal body P-ring formation protein FlgA [Halothiobacillus
           neapolitanus c2]
 gi|261836603|gb|ACX96370.1| flagella basal body P-ring formation protein FlgA [Halothiobacillus
           neapolitanus c2]
          Length = 255

 Score = 43.3 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 12/106 (11%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +N +     LA G  ++   L           + ++       +  E  G +
Sbjct: 123 VPARIQTMVNAISLARPLAPGTRISAEDLTTTPVNANQQVNAYLT------SPDEAIGQI 176

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143
           V  P+  G  +  + L      G++ ++ +G     +  + + +V 
Sbjct: 177 VTRPMQAGQILTQQDL------GIAKVIHRGDHVTVIAGTGNVSVS 216


>gi|28493099|ref|NP_787260.1| hypothetical protein TWT132 [Tropheryma whipplei str. Twist]
 gi|28476139|gb|AAO44229.1| unknown [Tropheryma whipplei str. Twist]
          Length = 254

 Score = 43.3 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 32/171 (18%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + I ++ + A   G+  +   +    Q              V ++   L++G        
Sbjct: 13  ILIGLALIAASFIGVFFVIKTNNSKSQ--------------VYVATRPLSIGDKFDAKQF 58

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
             V        D +I     PNA       +   PI+ G+ +    LV         +L 
Sbjct: 59  SIVEANLGANLDKYITPGSLPNA-------VFNRPIMPGEFLPKSALVP--------VLD 103

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRV 176
           K   A  + I+    + G +K  D VDV     + E       ++   +RV
Sbjct: 104 KDIVAVVLRIAGD--LPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRV 152


>gi|92114102|ref|YP_574030.1| flageller protein FlgA [Chromohalobacter salexigens DSM 3043]
 gi|91797192|gb|ABE59331.1| flagellar protein FlgA [Chromohalobacter salexigens DSM 3043]
          Length = 251

 Score = 43.3 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
            M  V   + Q    +    +  +  L++   +  G  ++ ++L W            +D
Sbjct: 104 VMVGVRCSNDQQVRYVQARVSASVRFLVAATAIQRGQRLSADMLGWERADVSRRPRNALD 163

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           D  Q        G +V   ++KG  +R ++L   
Sbjct: 164 DPSQA------IGKVVMQRLVKGMALRGDRLRQP 191


>gi|154486709|ref|ZP_02028116.1| hypothetical protein BIFADO_00530 [Bifidobacterium adolescentis
           L2-32]
 gi|154084572|gb|EDN83617.1| hypothetical protein BIFADO_00530 [Bifidobacterium adolescentis
           L2-32]
          Length = 206

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 15/113 (13%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
                   ++++  ++A G  +T   +E    P +               + +  G++ +
Sbjct: 15  RAAIATQPIVVAVRNVAKGTAITREAVELREAPSDGSLSNAFHT------LDDAVGLIAQ 68

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           V I   D +        G    S ++P+G    ++++ ++S   G+I P D V
Sbjct: 69  VGIGAHDVLMS------GMARASPVVPQGH--TSIEVRLASVADGLI-PGDKV 112


>gi|261406226|ref|YP_003242467.1| SAF domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261282689|gb|ACX64660.1| SAF domain protein [Paenibacillus sp. Y412MC10]
          Length = 367

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 29/170 (17%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQT--------------EEVITENPAKFINVLISKG 53
           G+  + V   V     +  V     Q               EE   +         +   
Sbjct: 15  GLAGAAVTGAVCAGAMLYYVHGSKEQRHVERTQYEQRIAELEETQLQQLNSMQAAWVPVR 74

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           D+  G  +    ++ V  P +             +  +E+ G   ++ +L+G PI    L
Sbjct: 75  DIPPGHFIEAKDIKEVRLPYDGTSGNLF------SGREEIAGKGAKIELLQGMPITGAML 128

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            +        L  +  ++  +           ++  D +DV +     + 
Sbjct: 129 FEE-EPTRPDLRHREMKSVYLPSD--------LRKGDVIDVRVQFPTGQD 169


>gi|220930503|ref|YP_002507412.1| hypothetical protein Ccel_3141 [Clostridium cellulolyticum H10]
 gi|220000831|gb|ACL77432.1| hypothetical protein Ccel_3141 [Clostridium cellulolyticum H10]
          Length = 226

 Score = 43.3 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 63/168 (37%), Gaps = 24/168 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           KL  ++GI +    AL+A  + +               +   + +++L+++ D+  G V+
Sbjct: 4   KLKGVIGIAIMFT-ALIATYLWVTY------------GQTEIQSVSLLVAQKDIPKGTVI 50

Query: 62  T--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
               +  +      E+   G I    +PN +  LDG +    I     I  +   +    
Sbjct: 51  NNAQDYFKSQKISLESAVAGAI----KPNQINLLDGRIAEQFIPANGQIVRQTFSNN--- 103

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167
             S +L + +    +  +   ++   I+  D + +  + S  + K   
Sbjct: 104 --SLILKENEFVFKLPPTWVYSIPSSIRRGDKISIYEIDSKIDNKLNT 149


>gi|308177877|ref|YP_003917283.1| hypothetical protein AARI_20920 [Arthrobacter arilaitensis Re117]
 gi|307745340|emb|CBT76312.1| conserved hypothetical membrane protein [Arthrobacter arilaitensis
           Re117]
          Length = 221

 Score = 43.0 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 70/200 (35%), Gaps = 28/200 (14%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            AL A ++   +    ++  E        +   V ++  ++ +G  +T   ++       
Sbjct: 28  LALGAVLVIASVAGTVYLVGEL------HQTSTVYVASSNITLGEQLTAENMKTQEVQLG 81

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134
           +  + ++  V  P   +          I  G+ I +  + +   G         +R   +
Sbjct: 82  DTLENYLH-VDMPVGQEARANTF----ISAGELIPVTSITNSALGS--------RRPINV 128

Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIAIDHNIDSDERVLV- 191
           ++    +    I P   VDV + +  S          + S + V A    ++S   ++  
Sbjct: 129 ELPADLSSS--ITPGSFVDVWIAKRESSGNTYEVPEKLSSMVEVAA---RVESGGGLVGT 183

Query: 192 -GSTATLELTPMQAKALVAA 210
            G+   L + P Q + L+ A
Sbjct: 184 HGTNLELLVEPNQLEPLLQA 203


>gi|325982376|ref|YP_004294778.1| flagella basal body P-ring formation protein FlgA [Nitrosomonas sp.
           AL212]
 gi|325531895|gb|ADZ26616.1| flagella basal body P-ring formation protein FlgA [Nitrosomonas sp.
           AL212]
          Length = 249

 Score = 43.0 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +        NVL +   +A G ++T   +         + +G + D         + G +
Sbjct: 117 VQAEINVMSNVLHTARPIATGQIITNEDIAPQNTNLTQLPEGILTDASL------IVGKV 170

Query: 98  VRVPILKGDPIRLEKLVDR 116
               +  G P+R + L   
Sbjct: 171 AATNLPAGQPLRPQMLRAP 189


>gi|328543155|ref|YP_004303264.1| flagellar protein FlgA [polymorphum gilvum SL003B-26A1]
 gi|326412901|gb|ADZ69964.1| flagellar protein FlgA [Polymorphum gilvum SL003B-26A1]
          Length = 322

 Score = 43.0 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           ++         ++    + ++V+     +  G ++ P  L  +  P + V    +     
Sbjct: 165 IAGAARSQTLTLSGVAREMVDVIALLQPIGRGSILKPEDLTVIRLPRQRVPSRAVT---- 220

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
             +  E+ G+  R  +  G P+        
Sbjct: 221 --SPDEIVGLAARTTLRPGQPLSRTDFERP 248


>gi|28572304|ref|NP_789084.1| membrane/secreted protein [Tropheryma whipplei TW08/27]
 gi|28410435|emb|CAD66821.1| putative membrane/secreted protein [Tropheryma whipplei TW08/27]
          Length = 248

 Score = 43.0 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 32/171 (18%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + I ++ + A   G+  +   +    Q              V ++   L++G        
Sbjct: 13  ILIGLALIAASFIGVFFVIKTNNSKSQ--------------VYVATRPLSIGDKFDAKQF 58

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
             V        D +I     PNA       +   PI+ G+ +    LV         ++ 
Sbjct: 59  SIVEANLGANLDKYITPGSLPNA-------VFNRPIMPGEFLPKSALVP--------VID 103

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRV 176
           K   A  + I+    + G +K  D VDV     + E       ++   +RV
Sbjct: 104 KDIVAVVLRIAGD--LPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRV 152


>gi|118588712|ref|ZP_01546120.1| Flageller protein FlgA [Stappia aggregata IAM 12614]
 gi|118438698|gb|EAV45331.1| Flageller protein FlgA [Stappia aggregata IAM 12614]
          Length = 331

 Score = 43.0 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 21/146 (14%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
             + ++VL+    +  G +V    L  +      V  G + +V      +++ G   R  
Sbjct: 189 ATEMVDVLVLVQPVRRGDIVREEDLNIIREARTKVPAGALTEV------EDIVGKQARTT 242

Query: 102 ILKGDPIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           +    P+         L++RG     + +  G +  +   ++ S   G        DV+ 
Sbjct: 243 LRANAPLSRNDVQRPILIERGEKITVTYVMPGMKLTSRAQAMDSGAKG--------DVID 294

Query: 157 VRSLSERKPTVTVVLSN--IRVIAID 180
           V +L  R+     + S   +RV A +
Sbjct: 295 VMNLQSRRIVPATITSRGQVRVHAAN 320


>gi|303325648|ref|ZP_07356091.1| NeuB family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863564|gb|EFL86495.1| NeuB family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 353

 Score = 43.0 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 13/83 (15%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
            +  EE   ++  +    L++   +  G  +TP  L W   P   +          P   
Sbjct: 281 ALPAEEPARQHARRS---LVTTRAVPAGQALTPADLTWKR-PAHGIS---------PRNY 327

Query: 91  QELDGVLVRVPILKGDPIRLEKL 113
            E+ G+  R  + +   +    L
Sbjct: 328 DEVLGLRARRDLPEDTVLTWADL 350


>gi|213693112|ref|YP_002323698.1| SAF domain protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|296454899|ref|YP_003662043.1| SAF domain-containing protein [Bifidobacterium longum subsp. longum
           JDM301]
 gi|213524573|gb|ACJ53320.1| SAF domain protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|296184331|gb|ADH01213.1| SAF domain protein [Bifidobacterium longum subsp. longum JDM301]
          Length = 208

 Score = 42.6 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 43/224 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R +   +    A++ G+ A+  V                +   ++++   +  G ++ 
Sbjct: 23  ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 67

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117
              ++  A P   +   +         ++++ G + ++ I   DPI     R   +   G
Sbjct: 68  AVDVQLAAMPVSAIGPSW------AGNIEDVVGKVAQIDIEAADPISTHMARDAPVTPTG 121

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L          +             D V +V              +  N  V+
Sbjct: 122 TTVIEVRLAS-------SVDDV-------LAGDRVRLVSAVGCEGADC---TLAENATVM 164

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +     +    +     +  + P  A  ++  Q    +  V+R
Sbjct: 165 NVGKPDTTGALGVNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 208


>gi|311111727|ref|YP_003982949.1| SAF domain-containing protein [Rothia dentocariosa ATCC 17931]
 gi|310943221|gb|ADP39515.1| SAF domain protein [Rothia dentocariosa ATCC 17931]
          Length = 218

 Score = 42.6 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 30/145 (20%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +K D+++G  +TP++L        +  D ++      +        +    I  G+ I  
Sbjct: 43  AKNDISIGQKITPDMLIEKQVNLGDSKDRYLSREQLESGKY-----IAVRQIPAGELIS- 96

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---- 166
                  +   +  + + +R  T+ +     +    K  + VD+ ++ S  E++      
Sbjct: 97  -------SASANENIQERRRLVTVTLDR--GIASTFKAGERVDIWVISSGKEKQKVPEGE 147

Query: 167 ---------VTVVLSNIRV--IAID 180
                       ++ N  +  IA+D
Sbjct: 148 GKNEDIESEQKPLVQNAEISTIAVD 172


>gi|13472577|ref|NP_104144.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Mesorhizobium loti MAFF303099]
 gi|14023323|dbj|BAB49930.1| flagellar protein; FlgA [Mesorhizobium loti MAFF303099]
          Length = 174

 Score = 42.6 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 19/167 (11%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
           + + ALV G +        +    ++ +  PA  + VLI    +  G  +    L+ V  
Sbjct: 14  ALILALVTGGVPAFAQESANPSATQIASNQPAGEV-VLIPNRVIYPGETIELAALKQV-- 70

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD-----PIRLEKLVDRGNGGLSSLLP 126
               +  G           +EL G + +  +L G       IR   LV++G       + 
Sbjct: 71  ---TLIAGKHKPDAMATHAEELQGKIAKRTLLPGRYIPTAAIREAWLVEQGAAVQVFFIA 127

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
            G    T+  +  +     ++P    D++ VR+    K     V+++
Sbjct: 128 GG---LTITATAVT-----LQPGSAGDLIKVRNSDSGKILSGTVMAD 166


>gi|21234163|ref|NP_639740.1| hypothetical protein SCP1.167 [Streptomyces coelicolor A3(2)]
 gi|13620649|emb|CAC36688.1| putative membrane protein [Streptomyces coelicolor A3(2)]
          Length = 227

 Score = 42.2 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 23/166 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R   + +  V A++  + A   V+    +T             VL    D+  G  +
Sbjct: 29  RERRWSVVALCIVLAVICALTAAWAVNSASDRT------------RVLALARDVPAGQAL 76

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T   +       +                  + G    V + KG  +    L   G+G  
Sbjct: 77  TSADVTVAEVSADAALS-----PLPATDKSSVVGKRTAVDLRKGGLLLASHLA-PGSG-- 128

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167
              L   +    + I    A  G + P D V  V   +  +  P  
Sbjct: 129 ---LGDDQEQVGVQIKRGMAPAGTLAPGDKVKAVTTPAEGDDLPKT 171


>gi|126668330|ref|ZP_01739289.1| flagellar basal body P-ring biosynthesis protein [Marinobacter sp.
           ELB17]
 gi|126627247|gb|EAZ97885.1| flagellar basal body P-ring biosynthesis protein [Marinobacter sp.
           ELB17]
          Length = 263

 Score = 42.2 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   LA G  +  +++            G I +       Q + G+ VR PI  G  I
Sbjct: 141 LVASRPLARGERLRADMVSLQTVVVNASRRGTIAEA------QSIIGMEVRRPINSGSLI 194

Query: 109 RLEKLVDRGN 118
             + L     
Sbjct: 195 TPDLLAAPDA 204


>gi|220934388|ref|YP_002513287.1| Flagellar basal body P-ring biosynthesis protein-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995698|gb|ACL72300.1| Flagellar basal body P-ring biosynthesis protein-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 262

 Score = 42.2 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++    L  GM +    L         +  G+++D+     M      ++R  +  G 
Sbjct: 138 EVVVLGHPLPRGMQLEAQHLRLERHDVGALPGGYLNDLELARDM------VLRRALPAGT 191

Query: 107 PIRLEKLVDR---GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            +  + +        G   +LL +G  A  + +   +   G     + V V   R+LS R
Sbjct: 192 VLTPQMVEPPRLVRRGQRVTLLAEG-SAVNVRVEGEALADG--SRGERVQV---RNLSSR 245

Query: 164 KPTVTVVLS 172
           +    VVLS
Sbjct: 246 RVVEGVVLS 254


>gi|312794261|ref|YP_004027184.1| SAF domain-containing protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181401|gb|ADQ41571.1| SAF domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 194

 Score = 41.8 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 71/218 (32%), Gaps = 37/218 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      I ++ + A++  +++   +S                 I V ++K  +  G +
Sbjct: 1   MKNR---IIKLAVIPAVLVALLSYIFISRQ------------TNMIQVPVAKNLIHQGEI 45

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  N + ++  P   +  G + +  Q    +     +        D I+   +    +  
Sbjct: 46  IDDNDITFLKLPSYALPPGTVKEKEQLVGKRAGVTRVA-GDFFYDDVIKSVYVQVYEDET 104

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L            + +++   +   I     + +    + +   P   V   N  V++I 
Sbjct: 105 L------------ICVNVPEPLTRFITEGTKLIIATTSTSNSGVPPFAV--ENAEVVSI- 149

Query: 181 HNIDSDERVLVGSTAT----LELTPMQAKALVAAQSVA 214
             +       V ST T    +++   QA  L ++    
Sbjct: 150 --LSKTTSNTVSSTNTRYAIVKVKRDQAVQLASSLKSG 185


>gi|54307266|ref|YP_128286.1| hypothetical protein PBPRA0029 [Photobacterium profundum SS9]
 gi|46911686|emb|CAG18484.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 253

 Score = 41.8 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 21/164 (12%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           AG + + L        +       A +  ++++K  L     +TP +L         +  
Sbjct: 101 AGRLTITLECQKPTYWKARAKAEVAIYRQLVVAKMTLNRHQEITPLMLSMKRSNVAYLRH 160

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-----KLVDRGNGGLSSLLPKGKRAAT 133
           G+        + Q L G+  R  I+ G  I        KLV R +G L         A  
Sbjct: 161 GYFT------SKQALTGLTSRRKIVAGKIISPRMVEQPKLVQRNDGVLIEAKFGKMNATM 214

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL--SNIR 175
             +++ S V G        D + VR+LS +K    +++    +R
Sbjct: 215 KGVALESGVKG--------DSIRVRNLSSQKEIYAIIVGPQKVR 250


>gi|332305609|ref|YP_004433460.1| flagella basal body P-ring formation protein FlgA [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172938|gb|AEE22192.1| flagella basal body P-ring formation protein FlgA [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 236

 Score = 41.8 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
            +   V++    ++ G ++  + ++ V        +  +      + + ++ G  ++  +
Sbjct: 111 KQMQPVVVISNAVSPGTILNQSNIKLVDM------NRALLRRTTFSTLDDVLGARIKRRV 164

Query: 103 LKGDPIRLEKL 113
             G PI    L
Sbjct: 165 RPGQPITPNNL 175


>gi|332534350|ref|ZP_08410191.1| hypothetical protein PH505_bg00020 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036169|gb|EGI72643.1| hypothetical protein PH505_bg00020 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 255

 Score = 41.8 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 23/207 (11%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
                 + + + S        +   N    +   +   +++ G  VT + +E  +     
Sbjct: 8   GATTAALTLLITSGMLASALGIRQVNDENSVTAWVVNKNMSAGQTVTVHDVEQKSID--- 64

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135
               + +        + L G  +    +   P+     +   +  LS  +P G+   T+ 
Sbjct: 65  -PSNYSNIALSVQNPRALIGQKLATNKMVEQPLFDTDFIRAKSQNLSEAIPAGRVLYTLK 123

Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--------------DH 181
           ++        I   D +D+V     ++    V  V  ++++I +              D+
Sbjct: 124 LNTLDIPLSRIHKGDRLDIV-----AKTNRLVRTVARDVQLIGVSKGPKSQAEKNGVMDN 178

Query: 182 NIDSDERVLVGSTATLELTPMQAKALV 208
                     G +  L + P    +L 
Sbjct: 179 LAKESNSATGGVSLVLAVLPKDVYSLA 205


>gi|306823596|ref|ZP_07456971.1| SAF domain protein [Bifidobacterium dentium ATCC 27679]
 gi|309802885|ref|ZP_07696986.1| SAF domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|304553303|gb|EFM41215.1| SAF domain protein [Bifidobacterium dentium ATCC 27679]
 gi|308220352|gb|EFO76663.1| SAF domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 213

 Score = 41.8 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 64/191 (33%), Gaps = 34/191 (17%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
            + A+    +++   +  G  +T +++     P +  ++     +       ++ G++ +
Sbjct: 48  RSTAETRPAVVTTQRIRRGDTITASVVAVRDIPYDAAWNNAFHTI------DDVTGMVAQ 101

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD---------ISISSAVGGMIKPND 150
           + I  G  +             S ++P+G  A  +          +     + G      
Sbjct: 102 IDIPDGGIVTAT------MARASPMIPQGHTAVDVRLASSIDELDVGDEVTLSG------ 149

Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
              V       +    +  + S   VI         +     +TAT  ++P +A A++  
Sbjct: 150 --AVPAQGDAGDDGGALRELASRATVIG-----KPAKDANGMATATFAMSPDEAAAVLQV 202

Query: 211 QSVAKLSLVLR 221
           Q  A +  V R
Sbjct: 203 QEYAAIIAVTR 213


>gi|148360444|ref|YP_001251651.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila str. Corby]
 gi|296106491|ref|YP_003618191.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148282217|gb|ABQ56305.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila str. Corby]
 gi|295648392|gb|ADG24239.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307609702|emb|CBW99212.1| hypothetical protein LPW_09931 [Legionella pneumophila 130b]
          Length = 233

 Score = 41.8 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           F +VL++K  L  G  ++ + +       + +  G+  D       +EL G++ +  I  
Sbjct: 107 FKSVLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITP 160

Query: 105 GDPIRL-----EKLVDRGN 118
             P+        KLV +G 
Sbjct: 161 NSPLNPFNIELAKLVHKGE 179


>gi|54293884|ref|YP_126299.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella
           pneumophila str. Lens]
 gi|53753716|emb|CAH15174.1| hypothetical protein lpl0940 [Legionella pneumophila str. Lens]
          Length = 233

 Score = 41.8 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           F +VL++K  L  G  ++ + +       + +  G+  D       +EL G++ +  I  
Sbjct: 107 FKSVLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITP 160

Query: 105 GDPIRL-----EKLVDRGN 118
             P+        KLV +G 
Sbjct: 161 NSPLNPFNIELAKLVHKGE 179


>gi|52841143|ref|YP_094942.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54296929|ref|YP_123298.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella
           pneumophila str. Paris]
 gi|52628254|gb|AAU26995.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750714|emb|CAH12121.1| hypothetical protein lpp0970 [Legionella pneumophila str. Paris]
          Length = 233

 Score = 41.8 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           F +VL++K  L  G  ++ + +       + +  G+  D       +EL G++ +  I  
Sbjct: 107 FKSVLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITP 160

Query: 105 GDPIRL-----EKLVDRGN 118
             P+        KLV +G 
Sbjct: 161 NSPLNPFNIELAKLVHKGE 179


>gi|326331487|ref|ZP_08197777.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
 gi|325950743|gb|EGD42793.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
          Length = 224

 Score = 41.8 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 49/138 (35%), Gaps = 11/138 (7%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                 +VL+++  +  G ++  + ++ +    +   +         ++  ++ G    +
Sbjct: 56  ATTDTQDVLVARHTIERGSLIEADDIKRIQISADPALEAL-----PGSSYGDVIGKKAGL 110

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I  G  +  E          S + P G     + ++ S +    ++  D V VV+  + 
Sbjct: 111 DIAAGALLTEEATTS------SPMPPDGMSVVGLALATSHSPAVNLRTGDRVRVVVTPAE 164

Query: 161 SERKPTVTVVLSNIRVIA 178
               P  T   +   V+A
Sbjct: 165 GAEAPAGTPEFTEAEVVA 182


>gi|51891538|ref|YP_074229.1| hypothetical protein STH400 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855227|dbj|BAD39385.1| hypothetical protein [Symbiobacterium thermophilum IAM 14863]
          Length = 203

 Score = 41.8 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 19/167 (11%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V +++ ++  G  +   +L+ V   +         +     A    DG      I  G+P
Sbjct: 42  VWVARREILPGTQLKEEMLQRVEV-DGPTRQLLAREALPRTASDTPDGWYATRAIRPGEP 100

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167
           +     V           P+  R  ++           ++P + VD+ +V    E     
Sbjct: 101 LIPAGNVSPVPPSADVTPPEALRVVSLRTEWVGPPE--LQPTEEVDLYVVTGDGEALR-- 156

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
             +L+  RV+      +SD   ++         P +   LV A +  
Sbjct: 157 --ILTGARVV----QAESDRVSVLV--------PEEQVPLVIAAADG 189


>gi|120603674|ref|YP_968074.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris DP4]
 gi|120563903|gb|ABM29647.1| N-acetylneuraminate synthase [Desulfovibrio vulgaris DP4]
          Length = 352

 Score = 41.8 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           +V P ++ +              L++   +  G V+ P  L W   P   +         
Sbjct: 274 MVGPCNITSLPSEEPARRNARRSLVAARAIPAGKVLEPADLTWKR-PAHGIS-------- 324

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKL 113
            P    E+ G+  R  I +   ++   L
Sbjct: 325 -PRCYDEVVGMKARADIAEDTVLKWGHL 351


>gi|46578765|ref|YP_009573.1| NeuB family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448177|gb|AAS94832.1| NeuB family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232632|gb|ADP85486.1| N-acetylneuraminate synthase [Desulfovibrio vulgaris RCH1]
          Length = 352

 Score = 41.8 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           +V P ++ +              L++   +  G V+ P  L W   P   +         
Sbjct: 274 MVGPCNITSLPSEEPARRNARRSLVAARAIPAGKVLEPADLTWKR-PAHGIS-------- 324

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKL 113
            P    E+ G+  R  I +   ++   L
Sbjct: 325 -PRCYDEVVGMKARADIAEDTVLKWGHL 351


>gi|329930829|ref|ZP_08284228.1| SAF domain protein [Paenibacillus sp. HGF5]
 gi|328934531|gb|EGG31036.1| SAF domain protein [Paenibacillus sp. HGF5]
          Length = 367

 Score = 41.8 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 29/170 (17%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQT--------------EEVITENPAKFINVLISKG 53
           G+  + V   V     +  V     Q               EE   +         +   
Sbjct: 15  GLAGAAVTGAVCAGAMLYYVHGSKEQRHVERTQYEQRIAELEETQLQQLNSMQVAWVPVR 74

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           D+  G  +    ++ V  P +             +  +E+ G   ++ +L+G PI    L
Sbjct: 75  DIPPGHFIEAKDIKEVRLPYDGTSGNLF------SGREEIAGKGAKIELLRGMPITGAML 128

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            +        L  +  ++  +           ++  D +DV +     + 
Sbjct: 129 FEE-EPTRPDLRHREMKSVYLPSD--------LRKGDVIDVRVQFPTGQD 169


>gi|288919641|ref|ZP_06413969.1| SAF domain protein [Frankia sp. EUN1f]
 gi|288348930|gb|EFC83179.1| SAF domain protein [Frankia sp. EUN1f]
          Length = 274

 Score = 41.8 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 19/121 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++  DL VG +V    L  V+   ++      D  +  +   EL G  +  P+ +G+ +
Sbjct: 64  VVAAADLPVGHLVVEGDLRTVSAQLDHATS---DRYYPGDRRSELVGATLARPVSRGELL 120

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG---MIKPNDHVDVVMVRSLSERKP 165
                              G  A    +       G    + P DHVDV + +  +    
Sbjct: 121 SGADFA-------------GASATATRLVPVIVKAGRLPALTPGDHVDVFVYQPDAAPPS 167

Query: 166 T 166
           T
Sbjct: 168 T 168


>gi|317486066|ref|ZP_07944919.1| NeuB family protein [Bilophila wadsworthia 3_1_6]
 gi|316922693|gb|EFV43926.1| NeuB family protein [Bilophila wadsworthia 3_1_6]
          Length = 352

 Score = 41.8 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           +    + +EE   +N  +    L++  ++  G ++  + L W   P   +          
Sbjct: 278 MRIEALASEEPARQNARRS---LVANRNIPAGKIIDKDDLTWKR-PAGGIS--------- 324

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKL 113
           P    E+ G+  R  I +   ++   L
Sbjct: 325 PRHYYEVLGMAARADIEEDTVLQWAHL 351


>gi|158317577|ref|YP_001510085.1| SAF domain-containing protein [Frankia sp. EAN1pec]
 gi|158112982|gb|ABW15179.1| SAF domain protein [Frankia sp. EAN1pec]
          Length = 258

 Score = 41.8 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 71/213 (33%), Gaps = 33/213 (15%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP-NAMQELDGVLV 98
               +    +++  DL  G +V  + L           DG + D + P +   EL G  +
Sbjct: 55  ATADRTRQWVVAAADLPAGHIVVDSDLTT----ATAHLDGAMSDRYYPGDRRSELLGATL 110

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
             P+  G+ +        G G  ++ L        + + + +     + P DHVDV + +
Sbjct: 111 ARPVSSGELLSGADFA--GEGAAATRL--------VPVIVKAGRVPDLSPGDHVDVFVYQ 160

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT-PMQAKALVAAQ-SVAKL 216
             +   P                     +     + A +E+      + +   + +    
Sbjct: 161 PGAAAPPETG-----------GDPAQPAQEGQAVAGAGVEIQVLHDVEFVAQDRLNSGDR 209

Query: 217 SLVLRSIADL-----NPSSSEDSDVWDVQEEGK 244
           SL LR   D        S SE  DV  ++ + +
Sbjct: 210 SLSLRVPVDDAIRAVAASQSERVDVVKLERDAR 242


>gi|163846486|ref|YP_001634530.1| SAF domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524269|ref|YP_002568740.1| SAF domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667775|gb|ABY34141.1| SAF domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448148|gb|ACM52414.1| SAF domain protein [Chloroflexus sp. Y-400-fl]
          Length = 269

 Score = 41.8 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 71/239 (29%), Gaps = 53/239 (22%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L  I++     + A    +  +               ++   V+I   D+  G  +
Sbjct: 15  RSNPLPAILIGLGLLITAVFTVIAFL-------------EASRSEPVVILARDVPYGQQI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           + + L  V  P        +  +  P       G      +   D ++   L++      
Sbjct: 62  SADDLAVVLLPRHR--PVQLTGISSPALA---VGQYAARHLAANDLLQPSMLMEHAPTQP 116

Query: 122 SS----LLPKGKRAATMDISISSAVG-------GMIKPNDHVDV--VMVRSLSERKPTVT 168
                  L  G  A          +        G   PN   DV     ++ + R+PTV 
Sbjct: 117 VYPNGEALTPGMVAVPFSTETIGPLTHRDRVNIGFSDPNGSPDVCDQARQAAAGREPTVN 176

Query: 169 V-------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
                         +LS  RV+ +D              A LELTP Q+  + A Q+  
Sbjct: 177 PPDSPLQPRPYACRLLSGARVLYVDGEAG---------IAYLELTPYQSHVIQAVQAAG 226


>gi|160878992|ref|YP_001557960.1| hypothetical protein Cphy_0834 [Clostridium phytofermentans ISDg]
 gi|160427658|gb|ABX41221.1| hypothetical protein Cphy_0834 [Clostridium phytofermentans ISDg]
          Length = 300

 Score = 41.8 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 23/165 (13%)

Query: 1   MKLTRLMGIV--VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           M+  + + +   ++ V  ++   I    +    +  ++ I E   +   V ++K  +  G
Sbjct: 1   MRRVKFVLVSSFIAIVSTIIGVSIIFLYLEKQRIDFDQRIEE---RKRYVYLAKDTINPG 57

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
            +++ + L+ V    +   + +I +V          G +  +PI    PI          
Sbjct: 58  EILSDDNLKKVYLECDMPTEYYITEVQ--------LGTMAIIPIEVDMPILRTMCSK--- 106

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           G +S  L    R  + ++   +     +  ND+VD+ +  S  E 
Sbjct: 107 GAISDEL----REVSCEVVNLNDN---LMENDYVDIRLRYSNGED 144


>gi|294786498|ref|ZP_06751752.1| LPXTG-motif cell wall anchor domain protein [Parascardovia
           denticolens F0305]
 gi|315226071|ref|ZP_07867859.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|294485331|gb|EFG32965.1| LPXTG-motif cell wall anchor domain protein [Parascardovia
           denticolens F0305]
 gi|315120203|gb|EFT83335.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 274

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 28/165 (16%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
           RL  I  + + +L+A  +    ++    Q+               ++  D++ G  + P 
Sbjct: 66  RLKKIATAFLISLMAFCLIQIGLTVSSNQSA-------------FVAARDISQGQEIHPG 112

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            +  V      +    +       +   + G    +P+ KGDP+    +    +      
Sbjct: 113 DIAQVRMRTNPLATRTVK------SASAVLGRRAAIPLRKGDPLVPTAVKAAEDYPADYT 166

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169
                   T+ ++ +S +   + P   VD+V  ++ S     V  
Sbjct: 167 --------TIALTPASQISS-LSPGQKVDLVTEKTESCHASPVET 202


>gi|115526230|ref|YP_783141.1| N-acetylneuraminate synthase [Rhodopseudomonas palustris BisA53]
 gi|115520177|gb|ABJ08161.1| N-acetylneuraminate synthase [Rhodopseudomonas palustris BisA53]
          Length = 357

 Score = 41.4 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 25  RLVSPHHVQTEEVITENP-AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF--I 81
           R      V+        P  K +  +++  +L  G ++    L +       +  G    
Sbjct: 269 RQALGDGVKVPYASETGPLNKMVKRVVAARELKKGHMLAAEDLAFR------IPVGAKIT 322

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
               +P   +++ G  ++  I   +PI    L
Sbjct: 323 SHTLRPFEAEQIVGHALKRDIGFEEPITRVDL 354


>gi|87310232|ref|ZP_01092363.1| hypothetical protein DSM3645_27428 [Blastopirellula marina DSM
           3645]
 gi|87286981|gb|EAQ78884.1| hypothetical protein DSM3645_27428 [Blastopirellula marina DSM
           3645]
          Length = 599

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 32/118 (27%)

Query: 126 PKGKR---AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
           P G R   A  +++   S     +K  D VDV +V +L      V  +L  +RV ++   
Sbjct: 80  PIGMREFRAV-VEVEDPST----LKAGDEVDVALV-TLGGDHGHVEKILKKVRVQSV--E 131

Query: 183 IDSDERVLVG---------------------STATLELTPMQAKALVAAQSVAKLSLV 219
           +   E+                            TL++T  Q +    A +   L L 
Sbjct: 132 VPRGEKPEPEKVVAAEEEAAAEHVAPELYPTRVVTLQVTSGQLEKARVADAQGILRLS 189


>gi|152990360|ref|YP_001356082.1| flagellar protein FlgA [Nitratiruptor sp. SB155-2]
 gi|151422221|dbj|BAF69725.1| flagellar protein FlgA [Nitratiruptor sp. SB155-2]
          Length = 238

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
             NV+++  D+  G ++    L              +        +QE+ G + RV I K
Sbjct: 115 LANVVVAVHDIPRGSLIQKKDLAVQKM---------VTHGKNYPDLQEIIGSVARVNIYK 165

Query: 105 GDPIRL 110
              I  
Sbjct: 166 NRKITR 171


>gi|83858807|ref|ZP_00952329.1| hypothetical protein OA2633_04871 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853630|gb|EAP91482.1| hypothetical protein OA2633_04871 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 315

 Score = 41.4 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +    ++P+       ++    +  +V +    +A G  +T   ++WV  PE  V     
Sbjct: 156 LFRAQIAPYPGGDPLTVSGRAQRVADVPVLNRTIARGDTITAADVDWVRLPENQV----- 210

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                  A   L G+  R  +    P+R   +   
Sbjct: 211 -RGEIILAETGLVGMTARRALTADRPVRSYDVEPP 244


>gi|240169343|ref|ZP_04748002.1| hypothetical protein MkanA1_08521 [Mycobacterium kansasii ATCC
           12478]
          Length = 221

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 21/131 (16%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           + +G   L+AG+ A+R             +   A    V+++  DL  G  +T N +   
Sbjct: 31  IAAGGLVLLAGVAALR-------------SNTDADGSKVVVAARDLRPGSALTYNDIRLE 77

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
                 + DG   D      +  + G  +  P  +G+ +   +++  G+    S    G 
Sbjct: 78  TRSAATLPDGSQTD------LGAVVGSTLAGPARRGEVLTDVRVL--GSRLAESTAGPGA 129

Query: 130 RAATMDISISS 140
           R   + ++ S+
Sbjct: 130 RIVPLHLADSA 140


>gi|77454606|ref|YP_345474.1| hypothetical protein pREL1_0039 [Rhodococcus erythropolis PR4]
 gi|77019606|dbj|BAE45982.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 234

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 28/218 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R + + +     +VA I  +  VS                  +VL+   D+  G ++ 
Sbjct: 40  RRRPIYLAIGVALVVVAVIGMLAAVSAMRA------------TTDVLVLARDVQQGQIIE 87

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L       +                  + G+     +  G  +    + D+   G  
Sbjct: 88  SKDLTVKTVNVD-----ADLGALSAGERGRVIGMSAGTRLPAGTVLMPAAVTDQVVPG-- 140

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
               +G     + +         I P D + VV      +  P    + +  +V +    
Sbjct: 141 ----EGLTMVGITVGYPHLPSEAILPGDMIRVVDTPREGDDPPVTGPINTKAQVYSTTTI 196

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            ++ E     +T  L +   +A  + A  +  ++S+VL
Sbjct: 197 AEAGE-----TTLNLLVPEAEANWVAARAATKRVSIVL 229


>gi|212716655|ref|ZP_03324783.1| hypothetical protein BIFCAT_01588 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660359|gb|EEB20934.1| hypothetical protein BIFCAT_01588 [Bifidobacterium catenulatum DSM
           16992]
          Length = 229

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V+I+   +A G V+T + L     P +        D        +  G++ +V + +
Sbjct: 63  TQPVVIAAQPIAKGSVITADSLALRDLPYDEALRNVFHDC------DDAVGLIAQVDVAE 116

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135
           G  +             S ++P+G  A  + 
Sbjct: 117 GGIVTST------MARASPVVPEGYTAIEVR 141


>gi|209964691|ref|YP_002297606.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Rhodospirillum centenum SW]
 gi|209958157|gb|ACI98793.1| flagella basal body P-ring formation protein FlgA, putative
           [Rhodospirillum centenum SW]
          Length = 326

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
             + I       + V I    L  G V+    + W+  P E V    + D      ++ L
Sbjct: 175 VRQTIGARAQDMVEVPILNRRLGSGEVIGDQDIAWIKVPRERVSADVVTD------LENL 228

Query: 94  DGVLVRVPILKGDPIRLEKLVDR 116
            G+  R  +    P+R   +   
Sbjct: 229 VGLAARRTLAANQPVRGRDVRTP 251


>gi|171741303|ref|ZP_02917110.1| hypothetical protein BIFDEN_00382 [Bifidobacterium dentium ATCC
           27678]
 gi|283455337|ref|YP_003359901.1| hypothetical protein BDP_0400 [Bifidobacterium dentium Bd1]
 gi|171276917|gb|EDT44578.1| hypothetical protein BIFDEN_00382 [Bifidobacterium dentium ATCC
           27678]
 gi|283101971|gb|ADB09077.1| Hypothetical protein BDP_0400 [Bifidobacterium dentium Bd1]
          Length = 213

 Score = 41.4 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 63/191 (32%), Gaps = 34/191 (17%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
            +  +    +++   +  G  +T +++     P +  ++     +       ++ G++ +
Sbjct: 48  RSTVETRPAVVTTQRIRRGDTITASVVAVRDIPYDAAWNNAFHTI------DDVTGMVAQ 101

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD---------ISISSAVGGMIKPND 150
           + I  G  +             S ++P+G  A  +          +     + G      
Sbjct: 102 IDIPDGGIVTAT------MARASPMIPQGHTAVDVRLASSIDELDVGDEVTLSG------ 149

Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
              V       +    +  + S   VI         +     +TAT  ++P +A A++  
Sbjct: 150 --AVPAQGDAGDDGGALRELASRATVIG-----KPAKDANGMATATFAMSPDEAAAVLQV 202

Query: 211 QSVAKLSLVLR 221
           Q  A +  V R
Sbjct: 203 QEYAAIIAVTR 213


>gi|23016878|ref|ZP_00056630.1| COG2089: Sialic acid synthase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 346

 Score = 41.4 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINV-LISKGDLAVGMVVTPNILEWVAF 71
           G+ A VA I  +  +    ++            I   +++  +LA G ++   +L     
Sbjct: 254 GLAAFVAAIRRVEAMLGDQIKRPTATELANMNGIRRGVVAARNLAAGTILDTTMLVCKR- 312

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                  G I    +P  +  L G  +R  + + +P+  + +
Sbjct: 313 -----PGGGI----EPEDLDRLAGFTLRRDLAEDEPLSWDDV 345


>gi|192358836|ref|YP_001982407.1| putative flagella basal body P-ring formation protein FlgA
           [Cellvibrio japonicus Ueda107]
 gi|190685001|gb|ACE82679.1| putative flagella basal body P-ring formation protein FlgA
           [Cellvibrio japonicus Ueda107]
          Length = 256

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 17/107 (15%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           I    + F ++ ++  DLA G  ++ + ++W       +   ++ +       +E+ G+ 
Sbjct: 124 IPAQVSVFRSIPVAMRDLARGEQISASDIQWETINISLLRQSYLLET------KEIIGLE 177

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG 144
           V+  I  G P     L          ++ +G+      + + S+VGG
Sbjct: 178 VKRNIGLGSPFLSASLDAP------KVIYRGE-----TVDLESSVGG 213


>gi|86739485|ref|YP_479885.1| hypothetical protein Francci3_0772 [Frankia sp. CcI3]
 gi|86566347|gb|ABD10156.1| hypothetical protein Francci3_0772 [Frankia sp. CcI3]
          Length = 257

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 66/202 (32%), Gaps = 29/202 (14%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++K DL  G ++    L  V+   +    G     +  + + +L G  +  P+  G+ +
Sbjct: 63  VVAKVDLPAGHIIVAGDLATVSARLDERTSGHY---YPGSRLDDLIGATLARPVDTGELV 119

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
                  +     + L+P       +       +G    P DHVDV + +S +    T  
Sbjct: 120 SGPDFAGQNTQ-PTRLVP-----IIVKAGRLPTLG----PGDHVDVFVFQSGAAAPSTT- 168

Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ-SVAKLSLVLRSIAD-- 225
                      D                  L     + +   + +    SL LR   D  
Sbjct: 169 ---------GGDQQAGRSTPAAPAGAGAEALVLHDVEFVSLEKLTSGDRSLTLRVPVDNA 219

Query: 226 ---LNPSSSEDSDVWDVQEEGK 244
              +  S SE  DV  ++ + +
Sbjct: 220 IQAVAASQSERVDVVKLERDSR 241


>gi|75992380|dbj|BAE45046.1| hypothetical protein [Terrabacter sp. DBF63]
          Length = 239

 Score = 41.0 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 41/230 (17%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K  R   I +     ++ G++     +              A+   VL++  D+  G   
Sbjct: 35  KRRRPALIGLGVALVVLCGLLGWWFTARG------------AQTHTVLVAASDIEAGKP- 81

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GNG 119
               ++        +  G   +      +Q   G+L    I +G  +     V++   +G
Sbjct: 82  ----VKVQQLSTTEIAGGGGIETMPAEQLQNTAGLLATSNIPEGTVLSPAMFVNKVTPDG 137

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170
           G+S +        ++  S   A+G  ++P D V VV+              E     T  
Sbjct: 138 GMSIV------GVSVKPSQMPALG--LRPGDTVSVVIAHSPQASGQTGQPGETAALTTGK 189

Query: 171 LSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                V ++    D         T  + L    A+ L+AA    +L++ L
Sbjct: 190 TWRATVASVGEPGDDG-----ARTIDVTLNSDSARELMAAGGSGRLAIAL 234


>gi|327285131|ref|XP_003227288.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Anolis
           carolinensis]
          Length = 2471

 Score = 41.0 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 60/189 (31%), Gaps = 35/189 (18%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF-IDDVHQPNAMQ 91
            T   +  + +    + ++           P I+   A P  +   G  +  +       
Sbjct: 110 STVTAVAPSSSTGGQLTVTTAP-PSATPTAPKIVILKA-PAGSSMTGAHVAQIQAQPIGA 167

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
              G +    +L G P+R    +  GN  L++ +  G           + +  +++P   
Sbjct: 168 ANGGKVTFAKVLTGTPLRPGVSIVSGNAVLATKVSPG-------AGTPTTLHRLVQPG-- 218

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
                       +P   +VL  ++       + S     +    TL  TP Q +      
Sbjct: 219 ------------RPVKQLVLQPVK----SQAVPSTGTTPLKPAVTLTSTPAQGE------ 256

Query: 212 SVAKLSLVL 220
              +++LVL
Sbjct: 257 -SKRITLVL 264


>gi|33864930|ref|NP_896489.1| putative N-acetylneuraminic acid synthetase [Synechococcus sp. WH
           8102]
 gi|33638614|emb|CAE06909.1| putative N-acetylneuraminic acid synthetase [Synechococcus sp. WH
           8102]
          Length = 754

 Score = 41.0 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  D+  G  +T  ++   + P + +         QPN + +L G  + V   +G+  
Sbjct: 409 LVAACDVPAGTEITEAMVRIQS-PGQGL---------QPNRLNDLIGRRLPVAKAQGEVF 458

Query: 109 RLEKLVDRGN 118
               L     
Sbjct: 459 FPSDLETPAA 468


>gi|320459290|dbj|BAJ69911.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 172

 Score = 41.0 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 55/184 (29%), Gaps = 28/184 (15%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
            +   ++++   +  G ++    ++  A P   +   +         ++++ G + ++ I
Sbjct: 12  VETEPMVVAARSIRRGDIILAVDVQLAAMPVSAIGPSW------AGNIEDVVGKVAQIDI 65

Query: 103 LKGDPI-----RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
              DPI     R   +   G   +   L          +             D V +V  
Sbjct: 66  EAADPISTHMARDAPVTPTGTTVIEVRLAS-------SVDDV-------LAGDRVRLVSA 111

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
                       +  N  V+ +     +    +     +  + P  A  ++  Q    + 
Sbjct: 112 VGCEGADC---TLAENATVMNVGKPDTTGALGVNDRLVSFAMPPEAAAKVMELQQAGAIM 168

Query: 218 LVLR 221
            V+R
Sbjct: 169 AVVR 172


>gi|227832659|ref|YP_002834366.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
 gi|262182856|ref|ZP_06042277.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
 gi|227453675|gb|ACP32428.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 214

 Score = 41.0 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 19/155 (12%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++   D+A G  +  + +     P   +    +      +   +  G ++      G+
Sbjct: 43  RVVVMARDVAAGETLALSDVSVARVPSSALPATAL-----GSNPDDAVGRVLVAAASTGE 97

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            +   +L+   +      +  G     + ++     +   +   D V++V     S+   
Sbjct: 98  ILTSTRLLSS-DLIADFGMEDGH---LIPLTLAEPEIARNLHHGDTVNIVSTDDGSDDIS 153

Query: 166 TVT---VVLSNIRVIAIDHNIDSDERVLVGSTATL 197
             T    +    RV+++    D         T TL
Sbjct: 154 APTRGSTIARGARVVSVGTGEDD------ARTHTL 182


>gi|227548266|ref|ZP_03978315.1| SAF domain protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079584|gb|EEI17547.1| SAF domain protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 206

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           VL      + G V+ P+ L+   FP + V D  + D+          G ++     +G+ 
Sbjct: 48  VLAFAQPASAGDVLEPSHLQLRRFPADAVPDNALTDI------DAATGQILAAAASRGEV 101

Query: 108 IRLEKLVDRG 117
           +   +LV   
Sbjct: 102 VTSTRLVGPD 111


>gi|103487065|ref|YP_616626.1| N-acylneuraminate-9-phosphate synthase [Sphingopyxis alaskensis
           RB2256]
 gi|98977142|gb|ABF53293.1| N-acetylneuraminate synthase [Sphingopyxis alaskensis RB2256]
          Length = 749

 Score = 40.6 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 17/97 (17%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
           G    R ++   +   EV+ ++       L++   +  G  +    ++  + P + +   
Sbjct: 384 GYGGARGITQGEMMNREVLAKS-------LVAARPIRAGQQIADEDIQIRS-PGQGL--- 432

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                 QP    EL G + +  +++GD      L D 
Sbjct: 433 ------QPYFRAELVGRIAKRDMIEGDFFFQSDLADA 463


>gi|187251719|ref|YP_001876201.1| SAF domain-containing protein [Elusimicrobium minutum Pei191]
 gi|186971879|gb|ACC98864.1| SAF domain protein [Elusimicrobium minutum Pei191]
          Length = 207

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 39/209 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       +V+S +  + A +                   +  K +N+ ++  D+  G V
Sbjct: 14  MSPKVFAFLVMSVILIMFAVLFIF----------AHKKRMHETKHVNIFVAAEDINKGTV 63

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T  +L  V         G          +Q L G    V I++G  +    +       
Sbjct: 64  ITQRLLSPVKMIAHE--PGAF----LVGDIQLLLGSYALVDIVQGSQMTKHIITAEPVIT 117

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIRVIA 178
              +   G R  +           ++ P   V     ++        T++    NIR+++
Sbjct: 118 APDI---GYRLYS-----------LVLPYQAVPRDHTKTDINIYRGETLINSFKNIRIVS 163

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKAL 207
           +      +E   V     LE+ P  A+ L
Sbjct: 164 M--KSVPEETAFV-----LEVDPQTAQEL 185


>gi|315127359|ref|YP_004069362.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring
           [Pseudoalteromonas sp. SM9913]
 gi|315015873|gb|ADT69211.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring
           [Pseudoalteromonas sp. SM9913]
          Length = 213

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
            +   V+++  +LA G V+TP+ L     P   +   +++D         L G   +  I
Sbjct: 88  TESAPVVVATTNLARGEVITPSHLSIDMRPAHFIRAQYLEDP------TALIGSRSKRNI 141

Query: 103 LKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGG 144
            +G P+ L ++  V +G+        KG R  T  I++     G
Sbjct: 142 REGMPVLLNQICMVCKGDSVTIYANIKGLRVKTTGIALEDGTLG 185


>gi|313497782|gb|ADR59148.1| N-acetyl neuramic acid synthetase NeuB [Pseudomonas putida BIRD-1]
          Length = 632

 Score = 40.6 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +A+    P    ++  +        +V I+  D+  G ++   +L   + P + +     
Sbjct: 264 LALPWQGPGRHASQGELLNRENLGKSV-IAARDIPCGALLEQGMLRIAS-PGQGLP---- 317

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                P  + EL G  VR  I++GD +    L ++
Sbjct: 318 -----PYRLPELLGKPVRRDIVQGDFLFESDLQEQ 347


>gi|62389769|ref|YP_225171.1| hypothetical protein cg1002 [Corynebacterium glutamicum ATCC 13032]
 gi|21323646|dbj|BAB98273.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
 gi|41325104|emb|CAF19585.1| putative secreted protein [Corynebacterium glutamicum ATCC 13032]
          Length = 217

 Score = 40.6 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 16/107 (14%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +V+  + A +   IA  L++   ++ +             ++   ++  G  V  + L  
Sbjct: 16  LVLRRIIAFILIGIAGLLMAHSWLKKDPTA----------VVIVQEIPAGTKVEASDLGL 65

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
            A P   +           +++ ++ G++    +  G+     + V 
Sbjct: 66  QAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIATKPRFVG 106


>gi|326330144|ref|ZP_08196455.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
 gi|325951957|gb|EGD43986.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
          Length = 223

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 22/165 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           KL R    VV  +  +  G I           TEE           VL+++  +     +
Sbjct: 27  KLRRRPIHVVLALIGICLGAIGAAWAWSATTNTEE-----------VLVARTTIERWSTI 75

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + +E V    +             +   ++ G    V I  G  +  E     G    
Sbjct: 76  EASDIERVRISSDAA-----LTPVPASDYNKIVGTRAAVDIAAGGLLTPESTTSDGFP-- 128

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
               P GK    + ++ + A    ++  D V V++  +     P 
Sbjct: 129 ----PTGKSIVGVSLTAAQAPATALRGGDPVRVIVTPTEGSEAPA 169


>gi|283852033|ref|ZP_06369308.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B]
 gi|283572583|gb|EFC20568.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B]
          Length = 357

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 49  LISKGDLAVGMVVTPNIL-EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           L +  DL  G  +TP+ L      PE+ +          P  +  L G  +   + +G+ 
Sbjct: 298 LRAVRDLPAGHALTPDDLEALRPIPEDGLP---------PYELDALLGKTLARALGRGEH 348

Query: 108 IRLEKLVD 115
           +    L  
Sbjct: 349 LTRRHLAR 356


>gi|109899408|ref|YP_662663.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Pseudoalteromonas atlantica T6c]
 gi|109701689|gb|ABG41609.1| flagella basal body P ring formation protein FlgA
           [Pseudoalteromonas atlantica T6c]
          Length = 236

 Score = 40.6 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
            +   V++    ++ G ++  + +E +        +  +      + + ++ G  ++  +
Sbjct: 111 KQMQPVVVISNAVSPGTILNQSNIELINM------NRALLRRTTFSNVDDVMGARIKRRV 164

Query: 103 LKGDPIRLEKL 113
             G PI    L
Sbjct: 165 RPGQPITPNNL 175


>gi|56118964|ref|NP_001007976.1| sialic acid synthase [Gallus gallus]
 gi|53127364|emb|CAG31065.1| hypothetical protein RCJMB04_2a5 [Gallus gallus]
          Length = 359

 Score = 40.6 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
            V A+ A   AM       +  E    E   K +   ++K  +  G ++T ++L      
Sbjct: 262 LVKAIRAVEKAMGSPIKQLLPCEMACNEKLGKSV---VAKVTIPEGTILTLDMLTVKV-- 316

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                 GF      P A+ +L G  V+  I + + I  + +
Sbjct: 317 --GEPKGF-----APEAIFDLVGQKVKKTIEEDETITEQAV 350


>gi|125973145|ref|YP_001037055.1| hypothetical protein Cthe_0627 [Clostridium thermocellum ATCC
           27405]
 gi|256003941|ref|ZP_05428927.1| SAF domain protein [Clostridium thermocellum DSM 2360]
 gi|281417338|ref|ZP_06248358.1| SAF domain protein [Clostridium thermocellum JW20]
 gi|125713370|gb|ABN51862.1| hypothetical protein Cthe_0627 [Clostridium thermocellum ATCC
           27405]
 gi|255992069|gb|EEU02165.1| SAF domain protein [Clostridium thermocellum DSM 2360]
 gi|281408740|gb|EFB38998.1| SAF domain protein [Clostridium thermocellum JW20]
 gi|316940628|gb|ADU74662.1| hypothetical protein Clo1313_1601 [Clostridium thermocellum DSM
           1313]
          Length = 291

 Score = 40.3 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 67/190 (35%), Gaps = 32/190 (16%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI--SKGDLAVGMV 60
             +L+ I VS    + +       ++         + ++    +++++  + G +    +
Sbjct: 16  PKKLLAIFVSVAVIIGS----FIYLNS--------VNDSAKDTVDIVVVKASGGIPANTL 63

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118
           +T + +   +     +   F DD+   + +  +        +  G PI  ++L D    +
Sbjct: 64  ITKDNIGKYSI----IRKEFNDDMITYDKVDSILNKYSLYYLRNGAPIYYDQLTDEKPRD 119

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------------LSERKPT 166
                 L +     T+        G +++P D V V +  +             S++   
Sbjct: 120 TEWLYDLEENYEVLTIKYDYLECGGSILRPGDLVRVRVTYTEEIPSSDGMMYGGSKKVKK 179

Query: 167 VTVVLSNIRV 176
             ++  +IRV
Sbjct: 180 TEILFDSIRV 189


>gi|301092739|ref|XP_002997222.1| mitochondrial import receptor subunit TOM70, putative [Phytophthora
           infestans T30-4]
 gi|262111493|gb|EEY69545.1| mitochondrial import receptor subunit TOM70, putative [Phytophthora
           infestans T30-4]
          Length = 595

 Score = 40.3 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 9/106 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + V    A ++  +A  L   H  Q +  I + P     V++S         
Sbjct: 1   MEQHAILQVAVLASLATISAFVAFSL--YHKRQQQFEIAKQP----EVVVST---PEAQP 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            T   L+    P                 + E +  L       GD
Sbjct: 52  PTQQKLKQQKIPAVLPPQNADTKPTPAANIGEQEATLATKKYKAGD 97


>gi|317124027|ref|YP_004098139.1| SAF domain protein [Intrasporangium calvum DSM 43043]
 gi|315588115|gb|ADU47412.1| SAF domain protein [Intrasporangium calvum DSM 43043]
          Length = 270

 Score = 40.3 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A  +A   V+          T+     +   ++   +A G V++ + +     P E+  
Sbjct: 58  GAAGLAGSAVALGVSALRPAATDAGLPTV---VAVRAIAAGAVISASDVHVENRPVEHRP 114

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
           +    D+      +         PI     +  E+L      GL +     + A T+ + 
Sbjct: 115 ESAAADIAAVVGRR------AAAPIEARGMLTGERLAG---AGLLAGRSDDRAAMTVPVM 165

Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
             +  G  ++    VD+    S  +       V++  +V+A+
Sbjct: 166 DIALTG--VEAGGRVDLYATGSGEQ-------VVAGAQVLAV 198


>gi|308069314|ref|YP_003870919.1| SAF domain protein [Paenibacillus polymyxa E681]
 gi|305858593|gb|ADM70381.1| SAF domain protein [Paenibacillus polymyxa E681]
          Length = 328

 Score = 40.3 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 2   KLTRLMGIVVSGVFALV-AGIIAMRLVSPHHVQTEEVITENPAKFI---NVLISK----- 52
           K     G + +G+  +  AG + + +   + V+ +  +       +       +K     
Sbjct: 9   KQKLYAGCIGAGIVGIFFAGYLMINIHQMNEVRKQAEVEAEQKWKVYEQEQRTAKKGWAV 68

Query: 53  -GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
             D++ G  +  N L+ +  P        + D        E+ G   ++ + KG  +   
Sbjct: 69  VRDISPGEQIASNDLKGIKVPSSQTPSNLLTDKS------EVSGTTAKIELKKGSVLTSA 122

Query: 112 KLVD 115
            +  
Sbjct: 123 MITA 126


>gi|114570498|ref|YP_757178.1| flagellar basal body P-ring biosynthesis protein FlgA [Maricaulis
           maris MCS10]
 gi|114340960|gb|ABI66240.1| flagellar protein FlgA [Maricaulis maris MCS10]
          Length = 314

 Score = 40.3 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
           G++A  +   H  Q   V     A  + + +    +A G  +T + + W++   + +   
Sbjct: 158 GMLAAEIAPYHGAQPVRVTGRAYA-TVELPVLARPVASGQEITASDITWISHRSDRLRPD 216

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            I D       + L G+  R  +   +P+R   L   
Sbjct: 217 AILDP------EALIGMETRRALRPNEPLRGYDLQRP 247


>gi|294790464|ref|ZP_06755622.1| SAF domain protein [Scardovia inopinata F0304]
 gi|294458361|gb|EFG26714.1| SAF domain protein [Scardovia inopinata F0304]
          Length = 281

 Score = 40.3 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 61/182 (33%), Gaps = 32/182 (17%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
            +V+ +K  ++ G  +  + L        ++    +       +  E  G + R+   KG
Sbjct: 102 ASVITAKHSISAGSTIDSSDLVLSFQRTNSLTGTTVR------SESEAVGKIARISFNKG 155

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-------R 158
           DPI    L        +   PK     T+     ++   +++    VD++         R
Sbjct: 156 DPILPAGLSS------APTYPKDYTTLTIS---PASTSAILRAGQKVDLISSSPCRHNNR 206

Query: 159 SLSERKPTVT------VVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQAKALV 208
             +E            ++  N  +++++ +              +T T+ L    A  +V
Sbjct: 207 HNNEPSENSEYRDQGCLIAHNAVILSVNSSSRPGLSLTGSEEKPATITVALPVASALIIV 266

Query: 209 AA 210
            A
Sbjct: 267 QA 268


>gi|163794153|ref|ZP_02188126.1| flagellar biosynthesis protein R [alpha proteobacterium BAL199]
 gi|159180767|gb|EDP65286.1| flagellar biosynthesis protein R [alpha proteobacterium BAL199]
          Length = 324

 Score = 40.3 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
           P    T  V++      ++V + +     G V++ N ++W+           +       
Sbjct: 175 PGSQATPVVVSGRVEPMLSVPVLRNHAMPGEVISENDIQWLRVESRRASMNSVTR----- 229

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDR 116
            +++L G   R PI  G PIRL  +   
Sbjct: 230 -LEDLLGRTPRRPIAAGQPIRLTDVRPN 256


>gi|318040475|ref|ZP_07972431.1| membrane-associated Zn-dependent protease [Synechococcus sp.
           CB0101]
          Length = 362

 Score = 40.3 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 19/208 (9%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN-----------PAKFINVLISKGDLAV 57
           + V    A++AG+I +         T + I  +             +   V  +   + +
Sbjct: 1   MGVLTALAILAGLIVVHEAGHFFAATWQGIRVSGFSVGFGPVLLERQRRGVQFALRAIPL 60

Query: 58  GMVVT-PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           G  V+ P+  E    P ++     + +   P     +   ++   +L    +  + LV  
Sbjct: 61  GGFVSFPDDDEESTIPADD--PDLLRNRPIPQRALVIAAGVLANLLLAWSVLVAQGLVVG 118

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              G S+    G   A +    ++A  G ++P D +      +L   +  V  ++  ++ 
Sbjct: 119 IPAGFSA--TPGVLVAGVQSGQAAAASG-LRPGDRILSADGVNLGGGQSAVAQLVERVK- 174

Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQA 204
            A D  +   +    G T T+ LTP   
Sbjct: 175 GAPDQTLQL-QAERAGQTVTIALTPADV 201


>gi|224370759|ref|YP_002604923.1| FlgA [Desulfobacterium autotrophicum HRM2]
 gi|223693476|gb|ACN16759.1| FlgA [Desulfobacterium autotrophicum HRM2]
          Length = 310

 Score = 40.3 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+ +  +L+ G ++ P  L         + D ++  +     M+ L   L      + +
Sbjct: 186 RVVCATRNLSRGEILAPKDLCLKRINVSKIPDNYLTRLDSLVGMR-LKQSLASNGFFREN 244

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
            +    L++RG+  +        R     ++         +  D + V
Sbjct: 245 MVEDSPLINRGDNVVLVARKGNMRIVATGVADQEG-----RLGDQIQV 287


>gi|258652943|ref|YP_003202099.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233]
 gi|258556168|gb|ACV79110.1| SAF domain protein [Nakamurella multipartita DSM 44233]
          Length = 224

 Score = 40.3 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 18/172 (10%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   V++ K D+A+G V+    L  V         G +  +   N +  + G    V
Sbjct: 57  KAGQKTPVVVVKSDIAMGEVIERADLSTVEV------AGGVTAIAGAN-LDSVVGQRAAV 109

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            ++ G  ++   L    +      +P G     + ++      G +   D V V+ +   
Sbjct: 110 GLMTGTLLQRSMLTQDHS------MPDGMVQVGVAVTGGRLPAGGVTTGDRVQVLALPEA 163

Query: 161 SERKPTV-TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
                    VV  +  + A       D     G   T+ +   +A  +  A 
Sbjct: 164 GGTGTAAPKVVAKDAEIFA----AMEDPTRAGGFLLTVLVPADEAAGVAGAS 211


>gi|332982956|ref|YP_004464397.1| SAF domain-containing protein [Mahella australiensis 50-1 BON]
 gi|332700634|gb|AEE97575.1| SAF domain protein [Mahella australiensis 50-1 BON]
          Length = 211

 Score = 40.3 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 56/152 (36%), Gaps = 21/152 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              +L +K  +  GM +   +L+ +  P   +  G + DV+      ++ G    V    
Sbjct: 31  TTGILTAKTTINAGMKIEETMLDTMQVPNTAIPSGAMTDVN------DVIGKTAAVTRAP 84

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRSLSER 163
           GD I  + L ++       +L + +    +++    ++  MI   + +++V +  + + +
Sbjct: 85  GDIIFRDALSEQEP-----VLKENETFIAVELPE--SLSAMIGEGNQINLVCLGNTAAAQ 137

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195
           +P              D      E+    +  
Sbjct: 138 QPITETQ-------PTDQTAAPAEQPQENTNV 162


>gi|157147106|ref|YP_001454425.1| flagellar basal body P-ring biosynthesis protein FlgA [Citrobacter
           koseri ATCC BAA-895]
 gi|157084311|gb|ABV13989.1| hypothetical protein CKO_02883 [Citrobacter koseri ATCC BAA-895]
          Length = 263

 Score = 40.3 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 12/99 (12%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
            +T  P  ++ V+I+K  L  G V++ + +        +    ++ D        E  G+
Sbjct: 125 AVTVKPDVYLPVVIAKNSLERGQVLSASDVSIKKLNISSTRGNYLTDP------DEAIGL 178

Query: 97  LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135
            V+  I +  PI L +L          L+ +G+R   + 
Sbjct: 179 TVKRRIRELQPITLTQLESP------VLVERGQRVLMIA 211


>gi|239620983|ref|ZP_04664014.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516084|gb|EEQ55951.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 208

 Score = 40.3 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 63/224 (28%), Gaps = 43/224 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R +   +    A++ G+ A+  V                +   ++++   +  G ++ 
Sbjct: 23  ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 67

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117
              ++    P       +         ++++ G + ++ I   DPI     R   +   G
Sbjct: 68  AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 121

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L          +             D V +V              +  N  V+
Sbjct: 122 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 164

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +     +          +  + P  A  ++  Q    +  V+R
Sbjct: 165 NVGKPDTTGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 208


>gi|56460258|ref|YP_155539.1| flagellar basal body P-ring biosynthesis protein FlgA [Idiomarina
           loihiensis L2TR]
 gi|56179268|gb|AAV81990.1| Flagellar basal body P-ring biosynthesis protein [Idiomarina
           loihiensis L2TR]
          Length = 240

 Score = 40.3 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           ++ NV+ +   +A G +++ + L +       V      D      M  L G  ++  I 
Sbjct: 116 RYKNVVTAASPMAPGQMISESDLVFSEVDLNRVRSNVFTD------MTALVGARIKKRIA 169

Query: 104 KGDPIRLEK 112
            G  I    
Sbjct: 170 AGQAISASD 178


>gi|239917956|ref|YP_002957514.1| SAF domain-containing protein [Micrococcus luteus NCTC 2665]
 gi|239839163|gb|ACS30960.1| SAF domain-containing protein [Micrococcus luteus NCTC 2665]
          Length = 215

 Score = 40.3 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 15/115 (13%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DL  G  +    L  V        + ++            +G +V   +  G+ +  
Sbjct: 54  AAEDLPPGTPIAAGDLRPVEVNLSEAGERYLSADAPAP-----EGRMVSGTVRAGELLPA 108

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
             LVD          P G+R   + +      G  +   D VDV +       + 
Sbjct: 109 AALVDAD--------PDGRRPVGVALDEPLPSG--VGVGDRVDVWVAMPAEGGRG 153


>gi|309790167|ref|ZP_07684739.1| SAF domain protein [Oscillochloris trichoides DG6]
 gi|308227752|gb|EFO81408.1| SAF domain protein [Oscillochloris trichoides DG6]
          Length = 274

 Score = 39.9 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 40/203 (19%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              K   V++   D+  G  ++   L  V  P        +  V  P     + G     
Sbjct: 44  ESRKSETVVVMVRDVPYGQQISAEDLGTVTVP--LHRPAQLAGVSDP---ATVVGQYAAR 98

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---- 156
            +   D ++   L+            +  +A  + +  ++   G +  +D V++      
Sbjct: 99  NLGSNDLLQPSMLMAAPPSQPVYPNGEQLQANMVPVPFATTTIGPLSYHDRVNIGFNDPS 158

Query: 157 --------VRSLSERKPTVTVV-------------LSNIRVIAIDHNIDSDERVLVGSTA 195
                   VR  ++ +P+   V             LS++RV+ +D            + A
Sbjct: 159 GAPDLCDQVRRAADGQPSAMPVVSTGMTRPYACRLLSSVRVLYVDEA---------ANVA 209

Query: 196 TLELTPMQAKALVAAQSVAKLSL 218
            LELTP Q+  + A Q+   L L
Sbjct: 210 YLELTPYQSHTIWALQAAG-LQL 231


>gi|228911107|ref|ZP_04074913.1| NeuB family member [Bacillus thuringiensis IBL 200]
 gi|229072734|ref|ZP_04205934.1| NeuB family member [Bacillus cereus F65185]
 gi|228710360|gb|EEL62334.1| NeuB family member [Bacillus cereus F65185]
 gi|228848470|gb|EEM93318.1| NeuB family member [Bacillus thuringiensis IBL 200]
          Length = 350

 Score = 39.9 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           +     +  E   +        L++ GD+  G V+T  +L W   P   +   ++     
Sbjct: 274 LGEKTKKPTEAEKQAIKYARRSLVATGDIEEGTVITREMLTWKR-PGTGISPKYL----- 327

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKL 113
               + + G+ V   I + D I  E L
Sbjct: 328 ----ETIIGLKVTKNIKEDDVITWEML 350


>gi|238788311|ref|ZP_04632105.1| Flagella basal body P-ring formation protein flgA [Yersinia
           frederiksenii ATCC 33641]
 gi|238723557|gb|EEQ15203.1| Flagella basal body P-ring formation protein flgA [Yersinia
           frederiksenii ATCC 33641]
          Length = 226

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   L  G  +TP  +E      + +  G + + H         G +    I  G P+ 
Sbjct: 106 VAARRLPSGAKITPEDIEMKQGRLDTLPPGALLEPHFA------QGAVSLRQINAGQPLT 159

Query: 110 LEKL 113
              L
Sbjct: 160 RNML 163


>gi|302559129|ref|ZP_07311471.1| membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476747|gb|EFL39840.1| membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 242

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 64/187 (34%), Gaps = 9/187 (4%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                I V+     +  G  VT +    V   E+        +  Q +A+++L  V    
Sbjct: 58  QAGDRIEVVKITEPIPAGQPVTDSNTTSVMVAED--PGIHYVEWSQLDALKKLKAVSAIP 115

Query: 101 P--ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA---VGGMIKPNDHVDVV 155
              +  G+    E  V  G   +   L +G+  A ++     A   VGG  +     D  
Sbjct: 116 AGVVAVGEMFGDEAKVPSGKALVGMSLKEGQYPAGLESGDVVAAYRVGGTSRSGS--DDD 173

Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215
                S    + ++++   RV  +      D         TL +   +A  L  A S  +
Sbjct: 174 AGTGGSAGGGSDSLLVEQARVDFVQAGKSDDIVSSANKPVTLLVDSAEAAVLTQAASNGE 233

Query: 216 LSLVLRS 222
           ++LVL  
Sbjct: 234 VALVLVP 240


>gi|119715775|ref|YP_922740.1| SAF domain-containing protein [Nocardioides sp. JS614]
 gi|119536436|gb|ABL81053.1| SAF domain [Nocardioides sp. JS614]
          Length = 230

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 25/205 (12%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A++  ++A+ L      Q  +           VL     +  G V+  + L  V      
Sbjct: 42  AVLFVVMAVLLAGWFWQQKSDREA--------VLAIDHSVPAGAVIAKDDLRIVEV---- 89

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135
                +D        Q + G    V +++G  +  + +  +   G       G+R   + 
Sbjct: 90  ---AGVDSTISSEDAQTVIGSTAAVGLVEGQILTPDMVTSKPLPG------PGERVVGLQ 140

Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST- 194
           +  + A  G++ P D V V+ V    +        L +  V+A    + S + V    T 
Sbjct: 141 LDATRAPTGLL-PGDVVVVIAVPPAGDPSSPAE--LDDPTVLAPQATVASADVVEGAGTR 197

Query: 195 ATLELTPMQAKALVAAQSVAKLSLV 219
            TL +    A+ + A  +  +++LV
Sbjct: 198 LTLVVPEAVAERVTAYVAAGRVALV 222


>gi|289705098|ref|ZP_06501502.1| SAF domain protein [Micrococcus luteus SK58]
 gi|289558126|gb|EFD51413.1| SAF domain protein [Micrococcus luteus SK58]
          Length = 215

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 15/115 (13%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DL  G  +    L  V        + ++            +G +V   +  G+ +  
Sbjct: 54  AAEDLPPGTPIAAGDLRPVEVNLSEAGERYLSADAPAP-----EGRMVSGTVRAGELLPA 108

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
             LVD          P G+R   + +      G  +   D VDV +       + 
Sbjct: 109 AALVDAD--------PDGRRPVGVALDEPLPSG--VGVGDRVDVWVAMPAEGGRG 153


>gi|330501133|ref|YP_004378002.1| SAF domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328915419|gb|AEB56250.1| SAF domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 234

 Score = 39.9 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 15/136 (11%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
             + F+ V+ +   +  G  ++   L+           GF       N+  E+ G   + 
Sbjct: 103 QASVFLPVVHAARVIERGQTISAEQLQLQEVNIGKAPRGFY------NSFDEVVGQGAKR 156

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG--GMIKPNDHV-DVVMV 157
            +  G  I    L          L+ +G++   +      +    G    N    DV+ V
Sbjct: 157 RVRAGQLIAPNLLTAP------LLIRRGQQVTIVASQDGISASATGEALANGREGDVIRV 210

Query: 158 RSLSERKPTVTVVLSN 173
           R+L  +K     V+ +
Sbjct: 211 RNLGSQKVIEAQVVED 226


>gi|94263286|ref|ZP_01287102.1| Flageller protein FlgA [delta proteobacterium MLMS-1]
 gi|93456369|gb|EAT06493.1| Flageller protein FlgA [delta proteobacterium MLMS-1]
          Length = 242

 Score = 39.9 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           + + L+     Q E  +  +  +   V++S   +  G ++  + L        N+   F+
Sbjct: 93  LRVTLLVNGRDQAEVRLNADLQRMGEVVVSARRINRGELIGSDDLMVQRRNISNLDSNFV 152

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            D       +E  G  +R  I  G  +   +L + 
Sbjct: 153 SDP------REAVGKQLRTTIQPGAVLHQSRLENP 181


>gi|256833186|ref|YP_003161913.1| SAF domain-containing protein [Jonesia denitrificans DSM 20603]
 gi|256686717|gb|ACV09610.1| SAF domain protein [Jonesia denitrificans DSM 20603]
          Length = 221

 Score = 39.9 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 23/179 (12%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                + V ++   LA G VV    + +V+                  A  E+ G  VRV
Sbjct: 41  PATTVVEVPVATRPLAAGEVVMAQDVSFVSVEVLGSPAVSF-------AGDEVVGAHVRV 93

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +  G+ +    L            P G    ++ ++  S +  ++   DHV VV   S 
Sbjct: 94  GVGLGEVLSGAVLTQSPAP------PDGFATVSVSVANPSVLS-VVAVGDHVAVVPRDSD 146

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS-------TATLELTPMQAKALVAAQS 212
           + +  T   VL  + V A           +VGS       T  L +   QA  +  A  
Sbjct: 147 AAQALTSHAVL--LSVSAPGEGSGGALSGVVGSADTSAPVTVLLAVPHEQATEVALAAQ 203


>gi|218546639|gb|ACK98965.1| flp pilus assembly protein FlpB [Aeromonas hydrophila]
          Length = 90

 Score = 39.9 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
          A +   P   Q  E      A+   VL++   +  G  + P  L W   P   
Sbjct: 27 APQTAVPPGEQAPE--PAASARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAE 77


>gi|332710529|ref|ZP_08430474.1| sialic acid synthase [Lyngbya majuscula 3L]
 gi|332350584|gb|EGJ30179.1| sialic acid synthase [Lyngbya majuscula 3L]
          Length = 357

 Score = 39.9 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  +L VG V+    +   + P + +          P  +  + G ++  P+   + I
Sbjct: 294 LVAGDNLPVGHVLRAEDIAMKS-PGDGLP---------PYELDHVIGKVLTKPLRVDESI 343

Query: 109 RLEKLVDR 116
            L  LV+ 
Sbjct: 344 MLAGLVEN 351


>gi|20560097|gb|AAM27839.1|AF498418_13 ORF_13; similar to NeuB family [Pseudomonas aeruginosa]
 gi|20560120|gb|AAM27859.1|AF498419_13 ORF_13; similar to NeuB family [Pseudomonas aeruginosa]
          Length = 351

 Score = 39.9 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  D+  G  +T   +        +V  G+      P    E+ G    V I    PI  
Sbjct: 296 AIRDIEAGEPLTAENIR-------SVRPGY---GLSPKHYTEVLGKTAAVKIPAHTPIHW 345

Query: 111 EKLVD 115
           EKL D
Sbjct: 346 EKLSD 350


>gi|157363240|ref|YP_001470007.1| SAF domain-containing protein [Thermotoga lettingae TMO]
 gi|157313844|gb|ABV32943.1| SAF domain protein [Thermotoga lettingae TMO]
          Length = 219

 Score = 39.9 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
           +VQ   +I++       +LI++  +  G ++    +E V F      D F    +  N +
Sbjct: 82  YVQASALISQP----RKILIARRTIKSGEIIKREDVELVEF------DVFGKKGNFTNNL 131

Query: 91  QELDGVLVRVPILKGDPI 108
           + + G + R    +G+PI
Sbjct: 132 EVVAGKVSRKMFREGEPI 149


>gi|289675699|ref|ZP_06496589.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 112

 Score = 39.9 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
           D  +  +++ +   T T+ +       L+ A     L L +RS  + N       D W  
Sbjct: 1   DERLKQEQQRINARTVTVAVPQALVARLMLASQTGVLRLAVRSADEGNL-----QDYWAN 55

Query: 240 QEEGKE 245
           +  G E
Sbjct: 56  EAGGPE 61


>gi|7662346|ref|NP_055728.1| ADNP homeobox protein 2 [Homo sapiens]
 gi|74757998|sp|Q6IQ32|ADNP2_HUMAN RecName: Full=ADNP homeobox protein 2; AltName: Full=Zinc finger
           protein 508
 gi|47938799|gb|AAH71589.1| ADNP homeobox 2 [Homo sapiens]
 gi|119587050|gb|EAW66646.1| KIAA0863 protein, isoform CRA_a [Homo sapiens]
 gi|119587051|gb|EAW66647.1| KIAA0863 protein, isoform CRA_a [Homo sapiens]
 gi|158258569|dbj|BAF85255.1| unnamed protein product [Homo sapiens]
 gi|167773575|gb|ABZ92222.1| ADNP homeobox 2 [synthetic construct]
 gi|168269504|dbj|BAG09879.1| zinc finger protein 508 [synthetic construct]
          Length = 1131

 Score = 39.9 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 34  TEEVITENPAKFINVLISKGDLAVG--MVVTPNILEW-VAFPEENVFDGFIDDVHQPNAM 90
           T+ V   N      VL     +  G    V+P +L    A P   +  G +    Q    
Sbjct: 404 TQPVGPINRPVGPGVLPVSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPA 463

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV--GGMIKP 148
             + G      +L    +    ++  G    S +LP G+ A  + +  +  V   G++ P
Sbjct: 464 GVIPGQTATSGVLPTGQMVQSGVLPVGQTAPSRVLPPGQTA-PLRVISAGQVVPSGLLSP 522

Query: 149 NDHVDVVMVRSLSER---------KPTVTVVL---SNIR--VIAIDHNIDSD 186
           N  V    V  +++          +P V+ VL     +R  V+ ++  + ++
Sbjct: 523 NQTVSSSAVVPVNQGVNSGVLQLSQPVVSGVLPVGQPVRPGVLQLNQTVGTN 574


>gi|163850064|ref|YP_001638107.1| FlgA, flagellar basal-body P-ring formation protein
           [Methylobacterium extorquens PA1]
 gi|240137198|ref|YP_002961667.1| Flagella basal body p ring formation protein FlgA [Methylobacterium
           extorquens AM1]
 gi|254559210|ref|YP_003066305.1| flagella basal body p ring formation protein FlgA [Methylobacterium
           extorquens DM4]
 gi|163661669|gb|ABY29036.1| FlgA, flagellar basal-body P-ring formation protein
           [Methylobacterium extorquens PA1]
 gi|240007164|gb|ACS38390.1| Flagella basal body p ring formation protein FlgA [Methylobacterium
           extorquens AM1]
 gi|254266488|emb|CAX22252.1| Flagella basal body p ring formation protein FlgA [Methylobacterium
           extorquens DM4]
          Length = 164

 Score = 39.9 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
              + A+   S   +   + +       + + +    +  G  +  ++L   A+P     
Sbjct: 9   GLVLAALAAGSAQPIAPAQAVEGMANAELMLPVPTVTIYPGDTIKESMLRMQAYPAT--- 65

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
             +       +A   + G + R  +L G+P+ +  + D 
Sbjct: 66  --YRARTAVIDASAAIAGRVARRMLLPGEPVPVNAVDDP 102


>gi|95929875|ref|ZP_01312616.1| Flageller protein FlgA [Desulfuromonas acetoxidans DSM 684]
 gi|95134171|gb|EAT15829.1| Flageller protein FlgA [Desulfuromonas acetoxidans DSM 684]
          Length = 243

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
            +V++++  L  G +++   +  V      + +   D       ++ + G LV   +  G
Sbjct: 119 ADVVVAQQSLKRGTIISAEDVSLVHLDVSRIREPIFD-------LKNVVGKLVARNVRAG 171

Query: 106 DPI 108
            P+
Sbjct: 172 QPV 174


>gi|148231444|ref|NP_001084989.1| hypothetical protein LOC432051 [Xenopus laevis]
 gi|47682297|gb|AAH70693.1| MGC83164 protein [Xenopus laevis]
          Length = 359

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++K  +  G V+T N+L            GF      P  + +L+G  V+  I + + +
Sbjct: 295 VVAKVKIPAGTVLTLNMLTVKV----AEPRGF-----PPEEIYDLEGKTVKREIPEDESV 345

Query: 109 RLEKL 113
             E +
Sbjct: 346 TEEAI 350


>gi|220932493|ref|YP_002509401.1| Flagellar basal body P-ring biosynthesis protein [Halothermothrix
           orenii H 168]
 gi|219993803|gb|ACL70406.1| Flagellar basal body P-ring biosynthesis protein [Halothermothrix
           orenii H 168]
          Length = 336

 Score = 39.5 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL++  ++  G  +    L         V    I+D + P     L   +V++P+ KG+
Sbjct: 210 KVLVATRNIKRGSNICKEDLALTTEKITGVRGEIINDFNDP----RLSYSIVKIPLQKGE 265

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
            +  + L          ++        + +S S    G  +  D+V V+
Sbjct: 266 ILTTDHLEQPVVIHWGDIVEAEVIVRNVKVSTSVKALGSGRVGDYVKVI 314


>gi|40788964|dbj|BAA74886.2| KIAA0863 protein [Homo sapiens]
          Length = 1181

 Score = 39.5 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 34  TEEVITENPAKFINVLISKGDLAVG--MVVTPNILEW-VAFPEENVFDGFIDDVHQPNAM 90
           T+ V   N      VL     +  G    V+P +L    A P   +  G +    Q    
Sbjct: 454 TQPVGPINRPVGPGVLPVSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPA 513

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV--GGMIKP 148
             + G      +L    +    ++  G    S +LP G+ A  + +  +  V   G++ P
Sbjct: 514 GVIPGQTATSGVLPTGQMVQSGVLPVGQTAPSRVLPPGQTA-PLRVISAGQVVPSGLLSP 572

Query: 149 NDHVDVVMVRSLSER---------KPTVTVVL---SNIR--VIAIDHNIDSD 186
           N  V    V  +++          +P V+ VL     +R  V+ ++  + ++
Sbjct: 573 NQTVSSSAVVPVNQGVNSGVLQLSQPVVSGVLPVGQPVRPGVLQLNQTVGTN 624


>gi|258651609|ref|YP_003200765.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233]
 gi|258554834|gb|ACV77776.1| SAF domain protein [Nakamurella multipartita DSM 44233]
          Length = 214

 Score = 39.5 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 24/168 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +L+R     V  V  ++  I A+ L +         +    ++   V  +   L+ G V+
Sbjct: 11  RLSRPRWFNVRVVGGILLVIAAIVLGAR--------VMAAGSQTTPVWAASRSLSAGTVI 62

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               L  V     +    ++       A     G  +  P+  G+ +    +    +G  
Sbjct: 63  GAGDLTAVEVNLGDQAGAYLT-----PAGDSPVGRTLVAPLGAGELLAGSAVEPTDSG-- 115

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169
                   R  ++ ++      G ++    +D+ + R  +       +
Sbjct: 116 --------RVVSIAVAPEHMPPG-VEHGATIDLYLTREANPGSAEAAI 154


>gi|15606189|ref|NP_213566.1| flagellar protein FlgA [Aquifex aeolicus VF5]
 gi|6225340|sp|O67005|FLGA_AQUAE RecName: Full=Flagella basal body P-ring formation protein flgA;
           Flags: Precursor
 gi|2983376|gb|AAC06962.1| flagellar protein FlgA [Aquifex aeolicus VF5]
          Length = 223

 Score = 39.5 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL-DGVLVRVPILKG 105
            VL++K D+  G  +  + +E      E     F ++     A++E+  G +VR   LK 
Sbjct: 102 RVLVAKRDIYPGERLNFSNVEEREIYLERCPQNFKENFVNFVALKEIKKGTIVRRSYLKK 161

Query: 106 D 106
           +
Sbjct: 162 E 162


>gi|297161942|gb|ADI11654.1| SAF domain protein [Streptomyces bingchenggensis BCW-1]
          Length = 203

 Score = 39.5 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 14/164 (8%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
            ++     +   VL+   D+  G V+T   L  V    E         V        + G
Sbjct: 27  ALVASAVGERGQVLVLARDVPAGHVLTAGDLRQVEVASE-------TGVVAAAGRSGVLG 79

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
              RVP++ G       L     GG  +  PKG+      +   SA  G+++  D V  V
Sbjct: 80  RRARVPLVAG-----SLLAPGQFGGRRAFPPKGQSEVAFAVEAGSASPGVVR-GDRV-AV 132

Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLEL 199
           +         T     ++  V+     + + E        T+ +
Sbjct: 133 LEGPGGTDGGTGDGAAASAPVVGTVTGMKAPESPGGVRVVTVLV 176


>gi|253996323|ref|YP_003048387.1| flagella basal body P-ring formation protein FlgA [Methylotenera
           mobilis JLW8]
 gi|253983002|gb|ACT47860.1| flagella basal body P-ring formation protein FlgA [Methylotenera
           mobilis JLW8]
          Length = 265

 Score = 39.5 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 26/127 (20%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   LA G VVT + L + +     +  G   D+ Q        G +V + +  G  +
Sbjct: 144 LVAAVPLAQGRVVTADDLLFQSGDLTQLPAGIFTDLAQA------QGRIVNISMTAGTVL 197

Query: 109 RLEKL-----VDRGNGGLSSLLPKGKR---------------AATMDISISSAVGGMIKP 148
           R E L     V +G   + +   KG R                  + ++    V G+ + 
Sbjct: 198 RQEMLKVSPVVQQGQTVMVTSSGKGFRVSAEGKAMTKANEGQVVQVKVASGQVVSGIARQ 257

Query: 149 NDHVDVV 155
              V+VV
Sbjct: 258 GGQVEVV 264


>gi|331006029|ref|ZP_08329371.1| Flagellar basal-body P-ring formation protein flgA [gamma
           proteobacterium IMCC1989]
 gi|330420158|gb|EGG94482.1| Flagellar basal-body P-ring formation protein flgA [gamma
           proteobacterium IMCC1989]
          Length = 241

 Score = 39.5 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VL+   +L  G +VT   + +       + +G+I D         + G  ++ P+ +G 
Sbjct: 117 SVLVINKNLPKGHIVTDTDINYSTKNIRTLRNGYISDKSF------VLGSQLKRPVREGQ 170

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRA-ATMDISISSAV-GGMI----KPNDHVDVVMVRSL 160
           PI   +L          L+ KG +   +  +   + V  G      +  + +DV  +R  
Sbjct: 171 PIYSHQLEPIE------LIKKGDKVNISAKVGSLTVVTSGTALDNGRKGEQIDVKNLR-- 222

Query: 161 SERKPTVTVV-LSNIRVI 177
           S R     ++  S++ VI
Sbjct: 223 SSRIIRTKIIGASSVEVI 240


>gi|94267695|ref|ZP_01290964.1| Flageller protein FlgA [delta proteobacterium MLMS-1]
 gi|93451897|gb|EAT02628.1| Flageller protein FlgA [delta proteobacterium MLMS-1]
          Length = 242

 Score = 39.5 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           + + L+     Q E  +  +  +   V++S   +  G ++  + L        N+   F+
Sbjct: 93  LRVTLLVNGRDQAEVRLNADLQRMGEVVVSARRINRGELIGSDDLMVQRRNISNLDGNFV 152

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            D       +E  G  +R  I  G  +   +L   
Sbjct: 153 SDP------REAVGKQLRTTIQPGAVLHQSRLEKP 181


>gi|261341498|ref|ZP_05969356.1| putative flagellar protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316294|gb|EFC55232.1| putative flagellar protein [Enterobacter cancerogenus ATCC 35316]
          Length = 261

 Score = 39.5 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
            +T  P  ++ VL++K  L  G V+T + +    F   N+  G+I          ++ G+
Sbjct: 123 AVTVKPDIYLQVLMAKNTLERGHVMTASDITRRKFNISNLRSGYITRP------DDVVGL 176

Query: 97  LVRVPILKGDPIRLEKL-----VDRGNGGLSSLLPKGKRAATMDISISSAVGG 144
            ++  I +  P+ L +L     V+RG   L      G  A TM I+      G
Sbjct: 177 TLKRRIRELQPLSLSQLDSPVMVERGQRVLMIADQDGVEARTMGIASKKGRKG 229


>gi|226309736|ref|YP_002769630.1| hypothetical protein BBR47_01490 [Brevibacillus brevis NBRC 100599]
 gi|226092684|dbj|BAH41126.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 262

 Score = 39.5 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 20/128 (15%)

Query: 1   MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK   L+ I ++S + A  +   A + +            +  A  I V  +  +++   
Sbjct: 1   MKKQTLLVICLISFLLAGSSFYAATQYID------AMAAEKLFAPVIKVA-AGKEISAFE 53

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +T + +  V    + +  G   D      +  + G      + +G+ + +EKL D    
Sbjct: 54  PITQDDVILVQEEVDEILPGSARD------LDTVLGKRSTQTMYEGEQLLVEKLTD---- 103

Query: 120 GLSSLLPK 127
             S LLP+
Sbjct: 104 --SQLLPE 109


>gi|224825773|ref|ZP_03698877.1| flagella basal body P-ring formation protein FlgA [Lutiella
           nitroferrum 2002]
 gi|224601997|gb|EEG08176.1| flagella basal body P-ring formation protein FlgA [Lutiella
           nitroferrum 2002]
          Length = 240

 Score = 39.5 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  DL  G V+  + +EW   P   + +G        ++  E  G+  R  + +G P+
Sbjct: 120 LVATRDLDAGKVLGADDVEWAQRPVYELEEGL-------HSPAEAVGLSSRSALRRGQPL 172

Query: 109 RLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           R + L        G +  +   K A      + +A G  ++     DV+ VR++   K
Sbjct: 173 RRKLLEAVVLVRRGDAVEIVASKEAI-----VVTAPGESLESGRRNDVIRVRNVGSGK 225


>gi|289641009|ref|ZP_06473178.1| SAF domain protein [Frankia symbiont of Datisca glomerata]
 gi|289509129|gb|EFD30059.1| SAF domain protein [Frankia symbiont of Datisca glomerata]
          Length = 271

 Score = 39.5 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 13/113 (11%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++  DL  G VV    L   +    ++               EL G  +  P+  G+  
Sbjct: 69  VVAAADLPAGHVVVAADLTTAS---AHLRSTTAARYFPGERRSELVGATLARPVSAGELF 125

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
                V               R  ++ +         + P DHVD+ +++   
Sbjct: 126 SGADFVLDDVRP--------TRLVSIVVKD--GRAPALTPGDHVDIFVLQRSG 168


>gi|145295050|ref|YP_001137871.1| hypothetical protein cgR_0993 [Corynebacterium glutamicum R]
 gi|140844970|dbj|BAF53969.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 217

 Score = 39.5 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 16/107 (14%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +V+  + A +   IA  L++   ++ +             ++   ++  G  V  + L  
Sbjct: 16  LVLRRIIAFILIGIAGLLMAHSWLKKDPTA----------VVIVQEIPAGTKVESSDLGL 65

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
            A P   +           +++ ++ G++    +  G+     + V 
Sbjct: 66  QAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIATKPRFVG 106


>gi|167623355|ref|YP_001673649.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           halifaxensis HAW-EB4]
 gi|167353377|gb|ABZ75990.1| SAF domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 257

 Score = 39.1 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++K  +  G +++   +E     +  +        HQ   + E+ G  ++  +  G 
Sbjct: 136 PVVVAKSTMGPGDLLSRGDIELEYIEQTTL------RGHQFEEISEVVGARLKRRVAPGQ 189

Query: 107 PIRLEKL 113
           PI   +L
Sbjct: 190 PIFANQL 196


>gi|283778976|ref|YP_003369731.1| hypothetical protein Psta_1193 [Pirellula staleyi DSM 6068]
 gi|283437429|gb|ADB15871.1| hypothetical protein Psta_1193 [Pirellula staleyi DSM 6068]
          Length = 799

 Score = 39.1 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIK 147
           ++ ++ G +V      G        + +G   GL+   P G ++ T++ S  + + G+  
Sbjct: 144 SVNDIIGRVVSKEKNPGLAFTESSFLPKGTRPGLAGATPPGMQSMTLESSSIAGLHGLKL 203

Query: 148 PNDHVDVV 155
             D VD++
Sbjct: 204 -GDKVDLI 210


>gi|33867071|ref|NP_898629.1| hypothetical protein PBD2.014 [Rhodococcus erythropolis]
 gi|33668905|gb|AAP73899.1| conserved hypothetical protein [Rhodococcus erythropolis]
          Length = 235

 Score = 39.1 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 25/178 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R + +       +V  I A+ LV+               +  NVL+   D+A G  +T
Sbjct: 41  RRRPVFLAAGIALVVVFVIGAVALVNGMR------------QVTNVLVVSQDIAQGQQIT 88

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L         V                + G +  VPI  G  +    +        S
Sbjct: 89  SQDLTTKQ-----VNAHAGIASVAIEDKATVVGQVAAVPIPSGTVLNPNAVT-------S 136

Query: 123 SLLP-KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
           +++P KG     + +S +      ++  D V +V      +  P    + S  +V++ 
Sbjct: 137 AVIPTKGLTLVGVTVSYAKLPAEPLRAGDMVRIVDTPRDQDDSPVQGPITSKAQVVST 194


>gi|163750576|ref|ZP_02157814.1| flagellar basal body P-ring biosynthesis protein [Shewanella
           benthica KT99]
 gi|161329731|gb|EDQ00720.1| flagellar basal body P-ring biosynthesis protein [Shewanella
           benthica KT99]
          Length = 234

 Score = 39.1 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++++  L  G ++T   +           +  +    Q + + E+ G   +  I    
Sbjct: 113 PVVVARATLGPGDLITKGDIVIKYV------EQTLLRGRQFSNLDEVVGTRAKRRIAPNQ 166

Query: 107 PIRLEKL 113
           PI    L
Sbjct: 167 PIFSNNL 173


>gi|301612838|ref|XP_002935918.1| PREDICTED: sialic acid synthase-like [Xenopus (Silurana)
           tropicalis]
          Length = 359

 Score = 39.1 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++   +  G V+T ++L            GF      P  + +L+G  V+  I + + +
Sbjct: 295 VVANVKIPAGTVLTLSMLTVKV----AEPRGF-----PPEEIYDLEGKTVKREIEEDESV 345

Query: 109 RLEKL 113
             E +
Sbjct: 346 TEEAI 350


>gi|257791659|ref|YP_003182265.1| N-acylneuraminate-9-phosphate synthase [Eggerthella lenta DSM 2243]
 gi|317487875|ref|ZP_07946467.1| NeuB family protein [Eggerthella sp. 1_3_56FAA]
 gi|325830571|ref|ZP_08163992.1| SAF domain protein [Eggerthella sp. HGA1]
 gi|257475556|gb|ACV55876.1| N-acylneuraminate-9-phosphate synthase [Eggerthella lenta DSM 2243]
 gi|316913001|gb|EFV34518.1| NeuB family protein [Eggerthella sp. 1_3_56FAA]
 gi|325487317|gb|EGC89759.1| SAF domain protein [Eggerthella sp. HGA1]
          Length = 365

 Score = 39.1 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           L        L+    ++  E  T   A     L++  D+  G V+   +L +   P   +
Sbjct: 267 LEGVCFVETLLGDSSLRHSESETAARANARRSLVAAADIPAGSVIDKGMLTFKR-PGTGI 325

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILK 104
               +          E+ G + RV I  
Sbjct: 326 SPSLV---------GEVVGRVARVDIPA 344


>gi|330445342|ref|ZP_08308994.1| flagella basal body P-ring formation protein FlgA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489533|dbj|GAA03491.1| flagella basal body P-ring formation protein FlgA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 235

 Score = 39.1 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINV--------LISKGDLAVGMVVTPNILEW 68
           L A +   + +S +     +  TEN   ++ V        +++   L  GMV+TP+ L  
Sbjct: 76  LTASLPGKQTLSGNVTVLVQCPTENWQLYVPVNVQLTLPKVVAAVALGRGMVLTPDKLSV 135

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK----------LVDRGN 118
                    +         +  +E+ G  V+  +  G+ ++             ++  G 
Sbjct: 136 QMI------ESRFQRGSSFDDPREIIGSKVKRSVKAGEMVQARDICLVCRNDSVIIRAGT 189

Query: 119 GGLSSLLPKGK 129
           GGL +++ KGK
Sbjct: 190 GGL-NIVTKGK 199


>gi|163784419|ref|ZP_02179303.1| flagella basal body P-ring formation protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880310|gb|EDP73930.1| flagella basal body P-ring formation protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 317

 Score = 39.1 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K    +++K  +  G +++ + ++              +D      + +L G  +R  + 
Sbjct: 188 KTTKAVVAKRYIPKGSIISYDDVKIDKV-------KAKNDERYFTNINKLIGKKLRFAVK 240

Query: 104 KGDPIR 109
           KG PI 
Sbjct: 241 KGQPIT 246


>gi|145597813|ref|YP_001161889.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Pestoides F]
 gi|145209509|gb|ABP38916.1| flagella basal body P-ring formation protein [Yersinia pestis
           Pestoides F]
          Length = 305

 Score = 39.1 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 165 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 218

Query: 95  GVLVRVPILKGDPIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           G+ ++  I +   +   +     LV R    L      G  A  + I+  +   G     
Sbjct: 219 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKG----- 273

Query: 150 DHVDVVMVRSLSERKPTVTVV 170
              +++ V++LS  +     V
Sbjct: 274 ---ELIKVKNLSSGRVVTATV 291


>gi|108809059|ref|YP_652975.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Antiqua]
 gi|108810744|ref|YP_646511.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Nepal516]
 gi|167398491|ref|ZP_02304015.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|21960413|gb|AAM87006.1|AE013948_14 putative flagellar protein [Yersinia pestis KIM 10]
 gi|45437658|gb|AAS63208.1| putative flagellar protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774392|gb|ABG16911.1| flagella basal body P-ring formation protein [Yersinia pestis
           Nepal516]
 gi|108780972|gb|ABG15030.1| putative flagella basal body P-ring formation protein [Yersinia
           pestis Antiqua]
 gi|167050995|gb|EDR62403.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
          Length = 305

 Score = 39.1 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 165 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 218

Query: 95  GVLVRVPILKGDPIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           G+ ++  I +   +   +     LV R    L      G  A  + I+  +   G     
Sbjct: 219 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKG----- 273

Query: 150 DHVDVVMVRSLSERKPTVTVV 170
              +++ V++LS  +     V
Sbjct: 274 ---ELIKVKNLSSGRVVTATV 291


>gi|218676248|ref|YP_002395067.1| hypothetical protein VS_II0470 [Vibrio splendidus LGP32]
 gi|218324516|emb|CAV25990.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 258

 Score = 39.1 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 27/210 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV---ITENPAKFINVLISKGDLAV 57
           M    ++ +V   +F+ +        ++ +++ T+E    + E     +++L+++  +  
Sbjct: 1   MNRVIILFLVALSIFSTLI------YINTNYISTDEEPLGVQEQEEPKVSILVTQKAIKR 54

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              +TP   +    P  ++ DG+   +     ++   G L +  I +G  I  + + +  
Sbjct: 55  SQPLTPKFYDKKFVPISDL-DGYYYTLEDDLIVEP--GALFKEDISEGTYITQDMISNPA 111

Query: 118 NGGLSSL-LPKGKRAATMDISISSAV-GGMIKPNDHVDVVMVRSLSE----------RKP 165
           +     L L  G+     +++    V    +   D V  V   S                
Sbjct: 112 DRDYIYLSLNDGELPYFYEVTGIGVVQTATLTAGDKVSFVSTTSSKSNLVENGYGDIGDL 171

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195
              V++S  RV+     I+  E      +A
Sbjct: 172 VSRVIISGARVL---QVIEGSEDSNSADSA 198


>gi|315497880|ref|YP_004086684.1| flagella basal body p-ring formation protein flga [Asticcacaulis
           excentricus CB 48]
 gi|315415892|gb|ADU12533.1| flagella basal body P-ring formation protein FlgA [Asticcacaulis
           excentricus CB 48]
          Length = 258

 Score = 39.1 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 6/97 (6%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
           G+  + + +     +         +  NVL+    L+ G V+    + W           
Sbjct: 93  GLRRIIVSAGADGISATQARAEAGRTKNVLVFTRSLSAGEVIAAADIAWQPVQAHLAGGS 152

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            + D       +   G  VR+P+  G  +R   L   
Sbjct: 153 LVSDP------EAAIGKTVRLPVRDGGVVRPGDLTAP 183


>gi|27380940|ref|NP_772469.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Bradyrhizobium japonicum USDA 110]
 gi|27354106|dbj|BAC51094.1| blr5829 [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
             +   T+   T    + + V +   D+    ++  + +     P+  V         + 
Sbjct: 176 DNNPAPTKLRFTGTAIETVEVAVLTRDIDRADLLKSSDVALERRPKAEV-------TGEA 228

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
            +     G+ +R P+  G PIR+  +V   
Sbjct: 229 ASRDRTIGMQLRRPMRAGTPIRVADIVKPD 258


>gi|219848639|ref|YP_002463072.1| SAF domain-containing protein [Chloroflexus aggregans DSM 9485]
 gi|219542898|gb|ACL24636.1| SAF domain protein [Chloroflexus aggregans DSM 9485]
          Length = 265

 Score = 38.7 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 71/243 (29%), Gaps = 61/243 (25%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L  I++     + A    +  +                +   V+I   D+  G  +
Sbjct: 15  RSNPLPAILIGLGLIVTAVFTVIAFL-------------EAGQSEPVVILARDVPYGHQL 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           + + L  V  P        +  +  P    ++ G      +   D ++   +  +     
Sbjct: 62  SADDLTVVLLPRHR--PIQLTGIASP---AQVIGQYAARNLSANDLLQPSMVTAQSPAQP 116

Query: 122 SS----LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------------- 161
                  L  G     + +  S+   G +  +D V++                       
Sbjct: 117 VYPNGETLTPGM----VPVPFSTETIGPLTHHDRVNIGFNDPSGAADVCDRARSVAEGRT 172

Query: 162 ----------ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
                     + +P    +LS  RV+ ID              A LELTP Q+ A+ A Q
Sbjct: 173 PTVLPPDTPLQPRPYACRLLSGARVLYIDSE---------AQVAYLELTPYQSHAIWALQ 223

Query: 212 SVA 214
           +  
Sbjct: 224 AAG 226


>gi|254785365|ref|YP_003072794.1| flagella basal body P-ring formation protein FlgA [Teredinibacter
           turnerae T7901]
 gi|237683904|gb|ACR11168.1| flagella basal body P-ring formation protein FlgA [Teredinibacter
           turnerae T7901]
          Length = 228

 Score = 38.7 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +      F  V+I+ G +  G  +T   +        ++  G++ D  +      + G+ 
Sbjct: 94  VPVQVETFEEVVIAAGAIGRGAQITAGDVVTQRMNTSHLTGGYLRDPAR------VVGLE 147

Query: 98  VRVPILKGDPIRLEKLVDRG 117
            R  +  G+ I+L ++    
Sbjct: 148 ARRMLRPGEIIKLNQVKAPD 167


>gi|317491682|ref|ZP_07950117.1| SAF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920116|gb|EFV41440.1| SAF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 269

 Score = 38.7 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 9/120 (7%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L  + +  +   +AGI   +    + V+ + +        I V  +  +L    ++  + 
Sbjct: 2   LFFLSIIVIAVGIAGIFVQKKTPENEVKQDAITA---VNTITVAKAVRELKPYDILKRDD 58

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQ--ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
               +          I D    +++   +L G LVR  I  G  I    +    +   ++
Sbjct: 59  YTLTSIEVAQ----DIKDRRDISSLDNGDLQGYLVRHNISNGSFILPHMVESPSSSTFAA 114


>gi|317125617|ref|YP_004099729.1| SAF domain protein [Intrasporangium calvum DSM 43043]
 gi|315589705|gb|ADU49002.1| SAF domain protein [Intrasporangium calvum DSM 43043]
          Length = 238

 Score = 38.7 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 35/208 (16%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++V  +  LV+  +  RLV+    +T               ++  DL  G  VT      
Sbjct: 36  LMVGIILVLVSATLGARLVASADERTPY------------FVAVDDLVAGDRVTGATFRR 83

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
           V     +   G++             G  +   +  G+ +    L D G   +       
Sbjct: 84  VDVALSDGMGGYLRADFPVP-----VGKALTRDLRAGELVPSSALSDPGEVDVQR----- 133

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVIAIDHNI 183
               T+    ++ VG  +     VDV +          +      ++L    V+ I    
Sbjct: 134 ---VTVRTDATATVG--LDRGQRVDVYVTPDAHGAGAEDEDSGTELLLEAAAVVEI--VA 186

Query: 184 DSDERVLVGST-ATLELTPMQAKALVAA 210
                     T   L +   Q KA+V A
Sbjct: 187 SEGGFGAAARTSVQLYVPTGQVKAVVEA 214


>gi|257387509|ref|YP_003177282.1| N-acylneuraminate-9-phosphate synthase [Halomicrobium mukohataei
           DSM 12286]
 gi|257169816|gb|ACV47575.1| N-acylneuraminate-9-phosphate synthase [Halomicrobium mukohataei
           DSM 12286]
          Length = 354

 Score = 38.7 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A+    +A R       Q       N +     L +  DL+ G V++ N +  +      
Sbjct: 257 AVTLSRLAARARGNAEKQPTAGERRNKSTTRKSLHAAVDLSAGEVLSSNDINILR----- 311

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                  D   P     + G ++   +  GDPI    +
Sbjct: 312 -----PTDGLSPKHYDTVIGAVLETDLGAGDPITTANV 344


>gi|218532879|ref|YP_002423695.1| signal transduction histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218525182|gb|ACK85767.1| signal transduction histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1096

 Score = 38.7 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           S +   G+RA T+    +S VGG +     V  ++ RS +   P  T+V   I       
Sbjct: 767 SIVARTGERAETVS-DYASLVGGRLLTLARVQALLTRSPNAGVPVATIVRDEID----AQ 821

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210
           ++ +D+  L G     EL+P  A+ L  A
Sbjct: 822 DLRADQYDLSGPKI--ELSPKAAEILTLA 848


>gi|115434052|ref|NP_001041784.1| Os01g0107700 [Oryza sativa Japonica Group]
 gi|52076197|dbj|BAD44851.1| pectin-glucuronyltransferase -like [Oryza sativa Japonica Group]
 gi|52076236|dbj|BAD44890.1| pectin-glucuronyltransferase -like [Oryza sativa Japonica Group]
 gi|113531315|dbj|BAF03698.1| Os01g0107700 [Oryza sativa Japonica Group]
 gi|215697737|dbj|BAG91731.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222617591|gb|EEE53723.1| hypothetical protein OsJ_00064 [Oryza sativa Japonica Group]
          Length = 550

 Score = 38.7 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 21  IIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEW-VAFPEENVFD 78
           ++A  L +    Q +      P     ++L  + +L  G    P++       P EN+ D
Sbjct: 47  LLASLLHNNTSNQPDSAAASQPPLPSTSILQLQTNLPSGFTTVPSMFLVPSPSPAENLDD 106

Query: 79  GFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLVDRG 117
           G +++   P+  +         ++ PI  G PIR   + ++G
Sbjct: 107 GSMEETDPPDLKENPPAESAPFLQEPISSGSPIRRSDIYNKG 148


>gi|318058041|ref|ZP_07976764.1| hypothetical protein SSA3_08873 [Streptomyces sp. SA3_actG]
 gi|318081071|ref|ZP_07988403.1| hypothetical protein SSA3_31325 [Streptomyces sp. SA3_actF]
          Length = 243

 Score = 38.7 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 74/200 (37%), Gaps = 35/200 (17%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVR 99
                ++V+ +  D+  G  ++ +    +   ++ ++     D +    +  +L   L +
Sbjct: 56  QAGDRVSVVRTTKDIPAGGSLSRDNTTDILVAKDESIHYLNWDQIDLAKSKYKLGSALPK 115

Query: 100 VPILKGDPIRLEK--LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
             ++ G+ +  +   +VD G   +   L +G+              G +KP D V V  V
Sbjct: 116 GSLVVGEMLIAKDKSVVDEGKALVGLALQEGQ------------YPGGLKPGDTVAVYHV 163

Query: 158 RS--------LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG-------STATLELTPM 202
                      S+       +LS     A     D+D     G        T T+ +   
Sbjct: 164 GKDAGAPASGESDSSAGNRTLLS-----AQADVKDADGSSKGGEALSTGDRTLTVSVPAS 218

Query: 203 QAKALVAAQSVAKLSLVLRS 222
           +A+AL  A SV ++++VL  
Sbjct: 219 EAQALAQASSVGEVAVVLVP 238


>gi|313682507|ref|YP_004060245.1| uroporphyrin-iii c-methyltransferase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155367|gb|ADR34045.1| uroporphyrin-III C-methyltransferase [Sulfuricurvum kujiense DSM
           16994]
          Length = 258

 Score = 38.3 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIR 175
           +G LS  +    R  +  +S+ SA        D V++  +  L     T  V+  LS IR
Sbjct: 122 SGPLSVGIAPTARGVSTGVSVVSAH----LSGDRVNLSWIPMLGVSDHTTVVLMGLSRIR 177

Query: 176 VI---AIDHNIDSDERVLVGSTATLELTPMQAKAL--VAAQSVA 214
            I   A+D  ID    V + S AT  +       L  + A +  
Sbjct: 178 QIVKEALDQGIDPHLPVAIVSNATTAIQSSIVTTLSELVATAKG 221


>gi|255609741|ref|XP_002539089.1| Flagella basal body P-ring formation protein flgA precursor,
           putative [Ricinus communis]
 gi|223508772|gb|EEF23295.1| Flagella basal body P-ring formation protein flgA precursor,
           putative [Ricinus communis]
          Length = 163

 Score = 38.3 bits (88), Expect = 1.00,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++   +A G  +T + LE          +G   +       +++ G    + I  G+ +
Sbjct: 42  VVATHPIARGQAITQDDLELQTRDLTQYPNGTFSNP------EQIIGRTATLNIPAGEVL 95

Query: 109 RLEKL 113
           R E+L
Sbjct: 96  RPEQL 100


>gi|184200536|ref|YP_001854743.1| hypothetical protein KRH_08900 [Kocuria rhizophila DC2201]
 gi|183580766|dbj|BAG29237.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 224

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 19/173 (10%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DLAVG  +TP  L  V      V  G++           +   + R  ++    I  
Sbjct: 61  AAEDLAVGQRITPEDLTTVDAHLAQVAGGYVPGGQPLQENAVVTQRVARGQLVPAASIGT 120

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV- 169
              +DR   G++   P   +A                P  HVDV + R  +  +  +   
Sbjct: 121 ADALDRTPVGIALQTPLPAQA---------------DPGAHVDVWVARPKTSGRGFMEPK 165

Query: 170 -VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA-QSVAKLSLVL 220
            ++    +  +D   D+      G T  + +TP Q   LV A  + AK++LVL
Sbjct: 166 KLVPGAEIARVDTK-DTALGGSGGVTVHVLVTPSQVGPLVDALGNDAKVTLVL 217


>gi|229819753|ref|YP_002881279.1| SAF domain protein [Beutenbergia cavernae DSM 12333]
 gi|229565666|gb|ACQ79517.1| SAF domain protein [Beutenbergia cavernae DSM 12333]
          Length = 219

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 22/147 (14%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
             +   + + V  +  DLA G  +  + L       +   +G    + +     ++   +
Sbjct: 45  AVQAADESVAVYAATDDLAPGDRLDADDLTVRQIRWDG--EGGTYLLAEDGVPDDV---V 99

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM- 156
           V  P+  G+      LV     G +  +    R   M +   S +G       HVDV   
Sbjct: 100 VTRPVGAGE------LVPSSATGPADAVDT--RPVAMPVPAGSGIG----AGVHVDVWAV 147

Query: 157 ----VRSLSERKPTVTVVLSNIRVIAI 179
                    +      +V+ N+ V ++
Sbjct: 148 PPSSTGDDGDEAAVPELVVENVLVASV 174


>gi|218129976|ref|ZP_03458780.1| hypothetical protein BACEGG_01559 [Bacteroides eggerthii DSM 20697]
 gi|217987834|gb|EEC54160.1| hypothetical protein BACEGG_01559 [Bacteroides eggerthii DSM 20697]
          Length = 340

 Score = 38.3 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 14/96 (14%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINV----LISKGDLAVGMVVTPNILEWVAFP 72
           L A + A+R +       E+ ++ +  +  +V    +++  D+  G ++T   L      
Sbjct: 248 LKAMVTAIRNIEQALGNEEKKVSTSEGRNKSVARKSIVAAKDIEKGELLTEENLTVKR-- 305

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
                 G I     P   + + G          + I
Sbjct: 306 ----PGGGI----SPMKWEYIIGTRAIRTFEADEQI 333


>gi|163853938|ref|YP_001641981.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665543|gb|ABY32910.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 1096

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           S +   G+RA T+    +S VGG +     V  ++ RS +   P  T+V   I       
Sbjct: 767 SIVARTGERAETVS-DYASLVGGRLLTLARVQALLTRSPNAGVPVATIVRDEID----AQ 821

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210
           ++ +D+  L G     EL+P  A+ L  A
Sbjct: 822 DLRADQYDLSGPKI--ELSPKAAEILTLA 848


>gi|255021350|ref|ZP_05293398.1| Flagellar basal-body P-ring formation protein flgA
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969213|gb|EET26727.1| Flagellar basal-body P-ring formation protein flgA
           [Acidithiobacillus caldus ATCC 51756]
          Length = 226

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
            +   ++++   L  G V+T   L  +     ++           +++ E  G  +R   
Sbjct: 98  VQSQKIVVAAHSLTAGTVLTAGDLALMPGNAASL------AGTPLSSLSEATGRTLRFGT 151

Query: 103 LKGDPIRLEKLVDR 116
           + G PI    L   
Sbjct: 152 VAGQPITQSMLAAP 165


>gi|254563908|ref|YP_003071003.1| hybrid histidine kinase [Methylobacterium extorquens DM4]
 gi|254271186|emb|CAX27197.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, two
           GAF, HWE histidine kinase, ATPase and REC (CheY-like)
           [Methylobacterium extorquens DM4]
          Length = 1069

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           S +   G+RA T+    +S VGG +     V  ++ RS +   P  T+V   I       
Sbjct: 740 SIVARTGERAETVS-DYASLVGGRLLTLARVQALLTRSPNAGVPVATIVRDEID----AQ 794

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210
           ++ +D+  L G     EL+P  A+ L  A
Sbjct: 795 DLRADQYDLSGPKI--ELSPKAAEILTLA 821


>gi|240141392|ref|YP_002965872.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, two
           GAF, HWE histidine kinase, ATPase and REC (CheY-like)
           [Methylobacterium extorquens AM1]
 gi|240011369|gb|ACS42595.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, two
           GAF, HWE histidine kinase, ATPase and REC (CheY-like)
           [Methylobacterium extorquens AM1]
          Length = 1069

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           S +   G+RA T+    +S VGG +     V  ++ RS +   P  T+V   I       
Sbjct: 740 SIVARTGERAETVS-DYASLVGGRLLTLARVQALLTRSPNAGVPVATIVRDEID----AQ 794

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210
           ++ +D+  L G     EL+P  A+ L  A
Sbjct: 795 DLRADQYDLSGPKI--ELSPKAAEILTLA 821


>gi|218528667|ref|YP_002419483.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           chloromethanicum CM4]
 gi|218520970|gb|ACK81555.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           chloromethanicum CM4]
          Length = 164

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVL--ISKGDLAVGMVVTPNILEWVAFPEENVF 77
           G++   L +                   ++  +    +  G  +  ++L   A+P     
Sbjct: 9   GLVLASLAAGSAQPIAPAQAVEGMANAELMLPVPTVTIYPGDTIKESMLRMQAYPAT--- 65

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
             +       +A   + G + R  +L G+P+ +  + D 
Sbjct: 66  --YRARTAVIDASAAIAGRVARRMLLPGEPVPVNAVDDP 102


>gi|317483025|ref|ZP_07942027.1| SAF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915526|gb|EFV36946.1| SAF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 208

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 43/224 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R +   +    A++ GI A+  V                +   ++++   +  G ++ 
Sbjct: 23  ALRRLTAALCVGLAVLFGIEAVLAV---------------VETEPMVVAARSIRRGDIIL 67

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117
              ++    P       +         ++++ G + ++ I   DPI     R   +   G
Sbjct: 68  AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 121

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L          +             D V +V              +  N  V+
Sbjct: 122 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 164

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +                +  + P  A  ++  Q    +  V+R
Sbjct: 165 NVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 208


>gi|313677870|ref|YP_004055866.1| n-acetylneuraminate synthase [Marivirga tractuosa DSM 4126]
 gi|312944568|gb|ADR23758.1| N-acetylneuraminate synthase [Marivirga tractuosa DSM 4126]
          Length = 353

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
            + +E +  EN  +    LI+  D+  G V+T + L W   P   +   FID +     +
Sbjct: 282 KLASESISAENARRS---LIATSDIPKGTVITKDHLTWKR-PAYGISPKFIDQLIGKKTL 337

Query: 91  QELD 94
            ++ 
Sbjct: 338 FDIK 341


>gi|37676252|ref|NP_936648.1| hypothetical protein VVA0592 [Vibrio vulnificus YJ016]
 gi|326424173|ref|NP_762070.2| Flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus CMCP6]
 gi|37200793|dbj|BAC96618.1| hypothetical protein [Vibrio vulnificus YJ016]
 gi|319999556|gb|AAO07060.2| Flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus CMCP6]
          Length = 272

 Score = 38.3 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 87/243 (35%), Gaps = 36/243 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGM 59
           K  ++M   V  +F  +A    +  +     +TEEV+   P     + +L     +    
Sbjct: 11  KKDKIMNRAVIILFLSLAIFSTLFFLMGDMFETEEVVAAEPVIEPTVVLLELTQGVEKSG 70

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           +V+ ++ + +      + +   +     N +    G L   P+LKG  +  + + + G+ 
Sbjct: 71  IVSKSVYKEIEV---KLSEAHSNRHALKNELNIQPGALFNRPLLKGTILSNDVISNPGDR 127

Query: 120 GLSSLLPKGKRAATMDISISS-----AVGGMI-----KPND----------HVDVVMVRS 159
               L        ++           +   +I     +P D            +++    
Sbjct: 128 DYMFL--------SLKKDEVPYYYEPSSSNIIENITLQPGDSVSFVSTTSSRSNLLETGY 179

Query: 160 LSERKPTVTVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
                    +++S+ +VI +   + N+++ +     ++  + L   Q   L  AQ +  +
Sbjct: 180 KDIGHLVSKIIISDAKVIQVIKSERNVNTTKASESQNSLVIALKVPQVLKLEMAQKIGDI 239

Query: 217 SLV 219
           S+V
Sbjct: 240 SIV 242


>gi|333025173|ref|ZP_08453237.1| putative membrane protein [Streptomyces sp. Tu6071]
 gi|332745025|gb|EGJ75466.1| putative membrane protein [Streptomyces sp. Tu6071]
          Length = 243

 Score = 38.3 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 35/200 (17%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVR 99
                ++V+ +  D+  G  ++ +    +   ++ ++     D +    +  +L   L +
Sbjct: 56  QAGDRVSVVRTTKDIPAGGSLSRDNTTDILVAKDESIHYLNWDQIDLAKSKYKLGSALPK 115

Query: 100 VPILKGDPIRLEK--LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
             ++ G+ +  +   +VD G   +   L +G+              G +KP D V V  V
Sbjct: 116 GSLVVGEMLIAKDKSVVDEGKALVGLALQEGQ------------YPGGLKPGDTVAVYHV 163

Query: 158 RS--------LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG-------STATLELTPM 202
                      S        +LS     A     D+D     G        T T+ +   
Sbjct: 164 GKDAGAPASGESGSSAGNRTLLS-----AQADVKDADGSSKGGEALSTGDRTLTVSVPAS 218

Query: 203 QAKALVAAQSVAKLSLVLRS 222
           +A+AL  A SV ++++VL  
Sbjct: 219 EAQALAQASSVGEVAVVLVP 238


>gi|312199830|ref|YP_004019891.1| SAF domain protein [Frankia sp. EuI1c]
 gi|311231166|gb|ADP84021.1| SAF domain protein [Frankia sp. EuI1c]
          Length = 287

 Score = 38.3 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 75/232 (32%), Gaps = 32/232 (13%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
            +F ++  ++++ L +      +             + +K DL  G VV+   L  V   
Sbjct: 47  LIFGILIVLVSVVLGARLFATADRTSAW--------VAAKADLPAGHVVSAGDLVTVR-- 96

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
              + D      +    ++E+ G  +  P+  GD I             ++ L       
Sbjct: 97  -AQLSDATAGRYYPGRRLKEVVGGTLARPVGAGDLISGSDFAGPDTA--ATRL------- 146

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVVLSNIRVIAIDHNI 183
            + I + +     + P DHVDV + ++               +     +  +  A   + 
Sbjct: 147 -VPIVVQAGRLPDLAPGDHVDVYVFQASGAVGAGDASSGTGGSGGTGNATGQSTATGQST 205

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQ-SVAKLSLVLRSIADLNPSSSEDS 234
                 + G+ A + +     + L   + +    SL LR   D    +   S
Sbjct: 206 GVGTPAVGGAGAEVLVL-HDVEFLGQQRIASGDRSLTLRVPVDAAIRAVAAS 256


>gi|303324285|ref|XP_003072130.1| HEAT repeat containing protein [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240111840|gb|EER29985.1| HEAT repeat containing protein [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 2003

 Score = 38.0 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 17/145 (11%)

Query: 12   SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM----VVTPNILE 67
             G+ ++ AG +   L S      ++ I       +   ++   + +G      + P  ++
Sbjct: 1832 LGLASVAAGCLRSLLHSTPRSSVDDAIARFIFPRLIAFVAG--IPLGTDGVPPIDPENIK 1889

Query: 68   --WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI---RLEKLVDRGN---- 118
               V      V    I     PNAM  L   L++    +G P+      +L++       
Sbjct: 1890 SSIVQTLVSCVGSAAIATGATPNAMALLIPALLKRAQGEGRPVYKETATRLLELAQVDQV 1949

Query: 119  --GGLSSLLPKGKRAATMDISISSA 141
                 ++ +  G RA T +I  S+ 
Sbjct: 1950 SFRNFAAGMDPGLRALTEEILRSTG 1974


>gi|163733144|ref|ZP_02140588.1| flagella basal body P-ring formation protein FlgA, putative
           [Roseobacter litoralis Och 149]
 gi|161393679|gb|EDQ18004.1| flagella basal body P-ring formation protein FlgA, putative
           [Roseobacter litoralis Och 149]
          Length = 140

 Score = 38.0 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           F  V++    +     ++ + +              I + +  + M ++ G   R  +  
Sbjct: 18  FAEVVVPAKTIRANATISASDITLKP----------IKNENAYSLMADVVGQEARTTLYA 67

Query: 105 GDPIRLEKLVDRG 117
           G PI  + +    
Sbjct: 68  GRPILFDDVGPPA 80


>gi|320037142|gb|EFW19080.1| HEAT repeat protein [Coccidioides posadasii str. Silveira]
          Length = 2050

 Score = 38.0 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 17/145 (11%)

Query: 12   SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM----VVTPNILE 67
             G+ ++ AG +   L S      ++ I       +   ++   + +G      + P  ++
Sbjct: 1879 LGLASVAAGCLRSLLHSTPRSSVDDAIARFIFPRLIAFVAG--IPLGTDGVPPIDPENIK 1936

Query: 68   --WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI---RLEKLVDRGN---- 118
               V      V    I     PNAM  L   L++    +G P+      +L++       
Sbjct: 1937 SSIVQTLVSCVGSAAIATGATPNAMALLIPALLKRAQGEGRPVYKETATRLLELAQVDQV 1996

Query: 119  --GGLSSLLPKGKRAATMDISISSA 141
                 ++ +  G RA T +I  S+ 
Sbjct: 1997 SFRNFAAGMDPGLRALTEEILRSTG 2021


>gi|167763885|ref|ZP_02436012.1| hypothetical protein BACSTE_02266 [Bacteroides stercoris ATCC
           43183]
 gi|167698001|gb|EDS14580.1| hypothetical protein BACSTE_02266 [Bacteroides stercoris ATCC
           43183]
          Length = 347

 Score = 38.0 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           IA   +    +  +  ++    K    + +   L  G ++T   +         +  G  
Sbjct: 264 IAEHWLGREELYIDPAVSAAKVKLERSIATNKALHPGDIITEEDIHL-------LSPG-- 314

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
            D  +     ++ G  VR  I + + I   
Sbjct: 315 -DGFKWAERDKVVGRRVRKEIPRNEIIYPS 343


>gi|225850284|ref|YP_002730518.1| putative flagellar protein FlgA [Persephonella marina EX-H1]
 gi|225645553|gb|ACO03739.1| putative flagellar protein FlgA [Persephonella marina EX-H1]
          Length = 312

 Score = 38.0 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K   V+ +K  +  G ++T   + ++   +                ++++ G   ++ I 
Sbjct: 183 KLRRVIAAKRYIKKGEIITEEDIRFIKTDKNV--------RKPFTDIKDIVGSTAKIDIS 234

Query: 104 KGDPIRLEKLVD 115
           + D I    ++ 
Sbjct: 235 ENDVITERMVIP 246


>gi|227546443|ref|ZP_03976492.1| cation transport ATPase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|322689956|ref|YP_004209690.1| hypothetical protein BLIF_1777 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|227213100|gb|EEI80979.1| cation transport ATPase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|320461292|dbj|BAJ71912.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 189

 Score = 38.0 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 63/224 (28%), Gaps = 43/224 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R +   +    A++ G+ A+  V                +   ++++   +  G ++ 
Sbjct: 4   ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 48

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117
              ++    P       +         ++++ G + ++ I   DPI     R   +   G
Sbjct: 49  AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L          +             D V +V              +  N  V+
Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +     +          +  + P  A  ++  Q    +  V+R
Sbjct: 146 NVGKPDATGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189


>gi|332982134|ref|YP_004463575.1| N-acetylneuraminate synthase [Mahella australiensis 50-1 BON]
 gi|332699812|gb|AEE96753.1| N-acetylneuraminate synthase [Mahella australiensis 50-1 BON]
          Length = 348

 Score = 38.0 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +K D+  G V+T ++L         +  G      +P  +  + G   ++ I K DPI  
Sbjct: 296 AKVDIPNGTVITADMLAI-------LRPGI---GLKPKYIDIVIGRAAKMDIKKNDPITW 345

Query: 111 EKL 113
           +K+
Sbjct: 346 DKI 348


>gi|238764388|ref|ZP_04625338.1| Flagella basal body P-ring formation protein flgA [Yersinia
           kristensenii ATCC 33638]
 gi|238697414|gb|EEP90181.1| Flagella basal body P-ring formation protein flgA [Yersinia
           kristensenii ATCC 33638]
          Length = 233

 Score = 38.0 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   L  G  +TP  +E      + +  G + +           G +    I  G P+ 
Sbjct: 113 VAARQLTAGAKITPQDIEMKQGRLDTLPPGALLEPSFA------QGAVSLRQINAGQPLT 166

Query: 110 LEKL 113
              L
Sbjct: 167 RNML 170


>gi|150260253|ref|ZP_01916981.1| lateral flagellar P-ring addition protein [Yersinia pestis
           CA88-4125]
 gi|162419782|ref|YP_001604851.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Angola]
 gi|165925092|ref|ZP_02220924.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939099|ref|ZP_02227651.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008979|ref|ZP_02229877.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211927|ref|ZP_02237962.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167418801|ref|ZP_02310554.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425137|ref|ZP_02316890.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167466345|ref|ZP_02331049.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis FV-1]
 gi|229837404|ref|ZP_04457567.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           Pestoides A]
 gi|229840617|ref|ZP_04460776.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842832|ref|ZP_04462984.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900941|ref|ZP_04516065.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           Nepal516]
 gi|294502784|ref|YP_003566846.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Z176003]
 gi|149289661|gb|EDM39738.1| lateral flagellar P-ring addition protein [Yersinia pestis
           CA88-4125]
 gi|162352597|gb|ABX86545.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Angola]
 gi|165913055|gb|EDR31680.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923292|gb|EDR40443.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992318|gb|EDR44619.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206673|gb|EDR51153.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962795|gb|EDR58816.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167055900|gb|EDR65681.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229682280|gb|EEO78372.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           Nepal516]
 gi|229690099|gb|EEO82156.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696983|gb|EEO87030.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705527|gb|EEO91537.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           Pestoides A]
 gi|262360816|gb|ACY57537.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           D106004]
 gi|262364761|gb|ACY61318.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           D182038]
 gi|294353243|gb|ADE63584.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Z176003]
 gi|320016715|gb|ADW00287.1| Flagellar basal-body P-ring formation proteinflgA [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 282

 Score = 38.0 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 142 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 195

Query: 95  GVLVRVPILKGDPIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           G+ ++  I +   +   +     LV R    L      G  A  + I+  +   G     
Sbjct: 196 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKG----- 250

Query: 150 DHVDVVMVRSLSERKPTVTVV 170
              +++ V++LS  +     V
Sbjct: 251 ---ELIKVKNLSSGRVVTATV 268


>gi|303327580|ref|ZP_07358021.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. 3_1_syn3]
 gi|302862520|gb|EFL85453.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. 3_1_syn3]
          Length = 755

 Score = 38.0 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 27/176 (15%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG-MV 60
           K T  MG ++ G+F LV G+I +R VS  + +   +   +    +  L  +  +A+    
Sbjct: 9   KRTYAMGFLIGGIF-LVCGLILLRQVSLQNERENALYLYDTVNQLRTLF-QRQIALDFQT 66

Query: 61  VTPNILEWVAFPEENVFD--------GFIDD--VHQPNAMQELD---GVLVRVPILKGDP 107
           +    +     PE+ V                 + +P+   +L    G L R   L G+P
Sbjct: 67  LRGVAVSIGHVPEKEVLPVLKEVNDNNAFLRMGLAKPDGSVDLVDISGDLHRNVNLAGEP 126

Query: 108 IRLEKLVDRGNGGLSSL----LPKGKRAA---TMDISISSAVGGMIKPNDHVDVVM 156
              + L   G   LS +    L  G  A     + +   + V G++   +  D+ +
Sbjct: 127 FFQKALA--GEAALSGVRRNPLGPG--AVVYCAVPVHGENGVSGVLVAVNAADIFL 178


>gi|290965452|dbj|BAI82252.1| merozoite surface protein 1 [Plasmodium fieldi]
          Length = 1832

 Score = 38.0 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 24/104 (23%)

Query: 127 KGKRAAT--MDISISSAVGGMIKPN--DHVD------------VVMVRSLSERKPTVTVV 170
            G +A T   ++S SS   G + P+  +  D            +     L E +  + V+
Sbjct: 222 DGAQAVTGSTEVSQSSGSAGSVSPSAPESYDQKKPIFQAMYNVIFYTNQLEEAQKLIEVL 281

Query: 171 LSNIRVI-------AI-DHNIDSDERVLVGSTATLELTPMQAKA 206
              ++V+       A+ D       ++   +  T  LTP Q +A
Sbjct: 282 EKRVKVLKEHKSIKALLDQVATEKGKLPSDNPTTANLTPEQTEA 325


>gi|260466618|ref|ZP_05812806.1| flagella basal body P-ring formation protein FlgA [Mesorhizobium
           opportunistum WSM2075]
 gi|259029624|gb|EEW30912.1| flagella basal body P-ring formation protein FlgA [Mesorhizobium
           opportunistum WSM2075]
          Length = 182

 Score = 38.0 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           + T L+  +V+G     A     +       Q+   I  N A    VLI    +  G  +
Sbjct: 11  RRTALVLALVTGGMPAFAQESTNQSAGQSANQSATQIASNQAVGEVVLIPNRVIYPGETI 70

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD-----PIRLEKLVDR 116
               L+ V      +  G           +EL G + +  +L G       IR   LV++
Sbjct: 71  ELTALKQV-----TLIPGKHKPEAMATVAEELQGKVAKRTLLPGRYIPSTAIRDAWLVEQ 125

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
           G       +  G    T+  +  +     ++P    D++ VR+    K     V+++
Sbjct: 126 GAAVQVFFISGG---LTISATAVT-----LQPGSAGDLIKVRNSDSGKILSGTVMAD 174


>gi|291382926|ref|XP_002707999.1| PREDICTED: N-acetylneuraminic acid phosphate synthase [Oryctolagus
           cuniculus]
          Length = 359

 Score = 38.0 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 49  LISKGDLAVGMVVTPNILEW-VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           +++K  +  G V+T ++L   V  P+    +              L G  V V I + D 
Sbjct: 295 VVAKVRIPEGTVLTLDMLTVKVGEPKGCAPEDIFT----------LVGKKVLVTIEEDDT 344

Query: 108 IRLEKLVDRG 117
           I  E + + G
Sbjct: 345 ILEEAVENHG 354


>gi|256396011|ref|YP_003117575.1| SAF domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256362237|gb|ACU75734.1| SAF domain protein [Catenulispora acidiphila DSM 44928]
          Length = 222

 Score = 38.0 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++A  ++    V    V        + VL+    + VG V++ + L+ V      +  G 
Sbjct: 38  VVAGSMLVLGAVVVGAVAFVKVGGRVPVLVVGAPVQVGQVISADDLKVVD-----IAPGT 92

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           +  V   +  +++ G    VP++  + +  +
Sbjct: 93  LAHVAFADEEKQVVGQPAAVPLVPDEVLTWQ 123


>gi|110677664|ref|YP_680671.1| flagellar basal body P-ring biosynthesis protein FlgA [Roseobacter
           denitrificans OCh 114]
 gi|109453780|gb|ABG29985.1| flagella basal body P-ring formation protein FlgA, putative
           [Roseobacter denitrificans OCh 114]
          Length = 140

 Score = 38.0 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 10/73 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           F  V++    +     +T + +              I + +    M ++ G   R  +  
Sbjct: 18  FAEVVVPAKTIRANATITASDITLKP----------IQNENAYTLMADVVGQEARTTLYA 67

Query: 105 GDPIRLEKLVDRG 117
           G PI  + +    
Sbjct: 68  GRPILFDDIGPPA 80


>gi|295837162|ref|ZP_06824095.1| membrane protein [Streptomyces sp. SPB74]
 gi|295826378|gb|EFG64805.1| membrane protein [Streptomyces sp. SPB74]
          Length = 241

 Score = 38.0 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 35/200 (17%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVR 99
           N    ++V+ +  D+  G  ++      V   E+ ++     D +    +  +L   L +
Sbjct: 54  NAGDRVSVVRTTKDVPAGGTLSRENTTDVLVAEDESIHYLRWDQIDLAKSKYKLRSALPQ 113

Query: 100 VPILKGDPIRLEK--LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
             ++ G+ +  +   +VD+G   +   L +G+              G +KP D V V  V
Sbjct: 114 GSLVVGEMLIGKDKSVVDQGKALVGLALKEGQ------------YPGGLKPGDTVAVYHV 161

Query: 158 RS--------LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG-------STATLELTPM 202
                      S        +LS     A     D+D     G        T T+ +   
Sbjct: 162 GKDAGAPAAGESGSSGGDRTLLS-----AAADVKDADGSSKGGEALSTGDRTLTVSVPAG 216

Query: 203 QAKALVAAQSVAKLSLVLRS 222
           +A+AL  A SV ++++VL  
Sbjct: 217 EAQALAQASSVGEVAVVLVP 236


>gi|293604999|ref|ZP_06687395.1| flagella basal body P-ring formation protein FlgA [Achromobacter
           piechaudii ATCC 43553]
 gi|292816604|gb|EFF75689.1| flagella basal body P-ring formation protein FlgA [Achromobacter
           piechaudii ATCC 43553]
          Length = 238

 Score = 38.0 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++   ++ G  +TP+ L        ++  G I D       Q + G+     I  G P+
Sbjct: 117 YVASRMISAGQALTPDDLAPRDGDLVSLPPGAITDP------QAVVGMSAAFRINAGQPV 170

Query: 109 RLEKL 113
           R   L
Sbjct: 171 RSSSL 175


>gi|288960395|ref|YP_003450735.1| N-acylneuraminate-9-phosphate synthase [Azospirillum sp. B510]
 gi|288912703|dbj|BAI74191.1| N-acylneuraminate-9-phosphate synthase [Azospirillum sp. B510]
          Length = 351

 Score = 38.0 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++  D+  G  ++P  +        ++  GF      P  + ++ G L    + +G+P+
Sbjct: 290 VVA--DVEAGESLSPTNVR-------SIRPGF---GMAPGHLPDVLGRLAIRRLKRGEPL 337

Query: 109 RLEKLVDRGNG 119
             + L     G
Sbjct: 338 SWDMLAPPSEG 348


>gi|2275162|gb|AAB81414.1| FlgA [Sinorhizobium meliloti]
          Length = 168

 Score = 38.0 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A++   +A  L+SP     E             +I K  +  G  +  ++LE V     +
Sbjct: 21  AVLFAAMASCLLSPAAALAEPPTA---------VIPKQTIYPGEKLDASMLEVVDVTNPD 71

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           + DG++       ++ E+DG++ +  +L G  I    L ++
Sbjct: 72  LRDGYVH------SIDEVDGMVTKRTLLPGRVILASALREQ 106


>gi|24374764|ref|NP_718807.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           oneidensis MR-1]
 gi|24349430|gb|AAN56251.1|AE015762_8 flagellar basal-body P-ring formation protein FlgA, putative
           [Shewanella oneidensis MR-1]
          Length = 235

 Score = 38.0 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   LA G +++P  +E     + ++         Q + + +L GV V+  + K +
Sbjct: 114 PVVVATEPLAPGELISPTQVEIRYVDQNSL------RGMQFSDINQLSGVRVKRRVAKNN 167

Query: 107 PIRLEKL 113
           PI    L
Sbjct: 168 PIFANNL 174


>gi|318604248|emb|CBY25746.1| flagellar basal-body P-ring formation protein FlgA [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 234

 Score = 38.0 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E  +T  P  ++ V ++K  L  G +V P+ +E           G+I D        E+ 
Sbjct: 94  EVAVTVKPDIYLPVWVAKNTLERGKLVAPDDIELKKKNISTAQGGYITDP------DEIV 147

Query: 95  GVLVRVPILKGDPIRLEKLVDR 116
           G  V+  I     +   +L   
Sbjct: 148 GFTVKRRIRNLQVVIPSQLEQP 169


>gi|289704896|ref|ZP_06501313.1| hypothetical protein HMPREF0569_0663 [Micrococcus luteus SK58]
 gi|289558392|gb|EFD51666.1| hypothetical protein HMPREF0569_0663 [Micrococcus luteus SK58]
          Length = 747

 Score = 38.0 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   L  G  +T + +   +        G      QPN +  L G  +   + +GD  
Sbjct: 405 LVAARPLQAGATITADDVTVKS-------PG---RGLQPNELPRLVGRTLHREMAEGDFF 454

Query: 109 RLEKLVD 115
               L D
Sbjct: 455 FAGDLTD 461


>gi|332533181|ref|ZP_08409050.1| flagellar basal-body P-ring formation protein FlgA
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037463|gb|EGI73917.1| flagellar basal-body P-ring formation protein FlgA
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 235

 Score = 38.0 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
            +   V+++  +L  G V+T + L     P   V   ++DD         L G   +  I
Sbjct: 110 VEMAPVVVATANLTRGEVITKSHLSIEMKPTHFVRIQYLDDPTM------LIGSRSKRNI 163

Query: 103 LKGDPIRLEKL 113
             G P+ L ++
Sbjct: 164 RSGMPVLLNQI 174


>gi|148270381|ref|YP_001244841.1| SAF domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147735925|gb|ABQ47265.1| SAF domain [Thermotoga petrophila RKU-1]
          Length = 280

 Score = 38.0 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K  NV++ K ++ VG V+    +      ++NVF+ +         + E+ G + R  + 
Sbjct: 150 KERNVVVLKRNINVGDVIKEEDVRLE---KKNVFEIY---GEPFFDVSEVVGKISRRYLK 203

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127
           +G  +  + + D  +     ++P 
Sbjct: 204 EGTVLTADMVKDPPDVVKGQVVPA 227


>gi|238785501|ref|ZP_04629484.1| Flagella basal body P-ring formation protein flgA [Yersinia
           bercovieri ATCC 43970]
 gi|238713603|gb|EEQ05632.1| Flagella basal body P-ring formation protein flgA [Yersinia
           bercovieri ATCC 43970]
          Length = 234

 Score = 38.0 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++   LA G  +T   +E      + +  G + + H         G +    I  G P+
Sbjct: 113 VVATRQLAAGAKITAQDVEMKQGRLDTLPPGALLEPHFA------QGAVSLRQINAGQPL 166

Query: 109 RLEKL 113
               L
Sbjct: 167 TRNML 171


>gi|46190327|ref|ZP_00121647.2| COG2217: Cation transport ATPase [Bifidobacterium longum DJO10A]
 gi|189440534|ref|YP_001955615.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium
           longum DJO10A]
 gi|189428969|gb|ACD99117.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium
           longum DJO10A]
          Length = 189

 Score = 38.0 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 63/224 (28%), Gaps = 43/224 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R +   +    A++ GI A+  V                +   ++++   +  G ++ 
Sbjct: 4   ALRRLTAALCVGLAVLFGIEAVLAV---------------VETEPMVVAARSIRRGDIIL 48

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117
              ++    P       +         ++++ G + ++ I   DPI     R   +   G
Sbjct: 49  AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L          +             D V +V              +  N  V+
Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +     +          +  + P  A  ++  Q    +  V+R
Sbjct: 146 NVGKPDATGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189


>gi|146296447|ref|YP_001180218.1| hypothetical protein Csac_1426 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410023|gb|ABP67027.1| hypothetical protein Csac_1426 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 194

 Score = 38.0 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 21/106 (19%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      I ++ + A++  +++   +S                 I + ++K  +  G +
Sbjct: 1   MKNR---VIKLAVIPAVLVALLSYIFISRQ------------TNMIQIPVAKNFIHQGEI 45

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +  + + ++  P   +  G I +       ++L G    V  + GD
Sbjct: 46  IDDSDITFLKLPSYALPQGVIKE------KEKLVGKRAGVTRVAGD 85


>gi|147900772|ref|NP_001087593.1| N-acetylneuraminic acid synthase [Xenopus laevis]
 gi|51513381|gb|AAH80398.1| MGC84329 protein [Xenopus laevis]
          Length = 359

 Score = 38.0 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++K  +  G V+T N+L            GF      P  + +L+G  ++  I + D +
Sbjct: 295 VVAKVKIPAGTVLTLNMLTVKV----AEPRGF-----PPEEIYDLEGKTLKREIEEDDSV 345

Query: 109 RLEKL 113
             E +
Sbjct: 346 TEEAI 350


>gi|323706341|ref|ZP_08117906.1| N-acetylneuraminate synthase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534303|gb|EGB24089.1| N-acetylneuraminate synthase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 347

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +I+  D+  G ++T  +L     P   +   F D          L G   R+ ILK   I
Sbjct: 292 IIAAKDIPSGSIITEEMLTTKR-PGTGLPPKFFD---------YLIGKKARIHILKDTII 341


>gi|119961944|ref|YP_948401.1| hypothetical protein AAur_2686 [Arthrobacter aurescens TC1]
 gi|119948803|gb|ABM07714.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
          Length = 214

 Score = 37.6 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 35/209 (16%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + I V  V A ++G+IA              +     +   V  ++ D+AVG VVT   L
Sbjct: 22  LLIGVLLVLASISGVIA--------------LVGTADRTTQVYTAREDIAVGQVVTEADL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
             V    ++V   ++   +        +G +    + K        LV + + G+   L 
Sbjct: 68  SIVKVRLDDVESSYVTVENGVA-----EGKVALQRVAKNQ------LVPQESLGVPDAL- 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL---SNIRVIAIDHNI 183
             ++   +       V     P   VDV +    S        +L   + I ++      
Sbjct: 116 -NRKPVAIATEEELPVQ--AVPGARVDVWIAMPGSNSAFDEPQLLLPSAEIALMTPGSTA 172

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQS 212
               +  V     + +T  Q   L+ AQ+
Sbjct: 173 FGSAKTTV---VMVLVTDEQMPKLLWAQA 198


>gi|307945667|ref|ZP_07661003.1| flagella basal body P-ring formation protein FlgA [Roseibium sp.
           TrichSKD4]
 gi|307771540|gb|EFO30765.1| flagella basal body P-ring formation protein FlgA [Roseibium sp.
           TrichSKD4]
          Length = 326

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 1/90 (1%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
           +  + + V      L  G V+    +     P   V    + D  Q   +    G+   +
Sbjct: 183 HAQEMLEVTTLLQPLRSGQVLRLEDMTTTRLPRTKVPANAVTDPKQIAGLAARTGLRANM 242

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
           P+++ D  +   +       ++ ++  G +
Sbjct: 243 PLVRNDFAKPVLISRGEKVSITYMVG-GMK 271


>gi|170022967|ref|YP_001719472.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis YPIII]
 gi|186896775|ref|YP_001873887.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590923|emb|CAH22579.1| Putative flagella basal body P-ring formation protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|169749501|gb|ACA67019.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis YPIII]
 gi|186699801|gb|ACC90430.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis PB1/+]
          Length = 272

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 132 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 185

Query: 95  GVLVRVPILKGDPIRLEKLVDR 116
           G+ ++  I +   +   +L   
Sbjct: 186 GLTIKRRIRQLQAVIPSQLEQP 207


>gi|319781680|ref|YP_004141156.1| flagella basal body P-ring formation protein FlgA [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167568|gb|ADV11106.1| flagella basal body P-ring formation protein FlgA [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 175

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 19/167 (11%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
           + V ALV G +          Q+   I  N A    VLI    +  G  +    L+ V  
Sbjct: 15  ALVLALVTGTMPA-FAQESANQSANRIASNQAGGEVVLIPSRVIYPGETINLAALKQV-- 71

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD-----PIRLEKLVDRGNGGLSSLLP 126
               +  G           +ELDG + +  +L G       IR   LV++G       + 
Sbjct: 72  ---TLVVGKHKPEAVATRAEELDGKVAKRTLLPGRYIPSAAIREAWLVEQGASVQIFFIA 128

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
            G    T+  +  +     ++P    D+V VR++   K     V+++
Sbjct: 129 GG---LTISATAVT-----LQPGAAGDLVKVRNIDSGKILSGTVMAD 167


>gi|332710335|ref|ZP_08430283.1| N-acetylneuraminate synthase [Lyngbya majuscula 3L]
 gi|332350884|gb|EGJ30476.1| N-acetylneuraminate synthase [Lyngbya majuscula 3L]
          Length = 755

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L+   +L  G V+T  ++E  +        G      QPN   EL G L R     GD  
Sbjct: 406 LVINCNLEPGQVITSEMIEVKS-------PG---KGLQPNRKTELIGQLARRRFKAGDFF 455

Query: 109 RLEKL 113
               L
Sbjct: 456 FPSDL 460


>gi|258511181|ref|YP_003184615.1| hypothetical protein Aaci_1195 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477907|gb|ACV58226.1| hypothetical protein Aaci_1195 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 238

 Score = 37.6 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 70/185 (37%), Gaps = 32/185 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +  +   V G+  +  G+ A+               +     + V+ +K  +     
Sbjct: 1   MKRSAFLLTGV-GLAVIAGGLFAVGY-------------KLTTDTVPVITAKTYIPADTP 46

Query: 61  VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           V P+ L     P       G I +       Q L G  + V  + G+P+ +  +    + 
Sbjct: 47  VNPSELGTEQVPRMFARQMGAITNE------QSLAGRYLSVSAVPGEPLTMNMVATADD- 99

Query: 120 GLSSLLPKGKRA-----ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174
            L +L+ +  +A       +D + +SA+   ++P    D+ +  + S +  T    L  +
Sbjct: 100 -LQALVTQYAQAHHVHGVLVDYAANSALANAVQPGQ--DIALAINPSGQNATPE--LYPV 154

Query: 175 RVIAI 179
            V+A+
Sbjct: 155 HVLAV 159


>gi|119952317|ref|YP_949886.1| hypothetical protein AAur_pTC10012 [Arthrobacter aurescens TC1]
 gi|119951447|gb|ABM10357.1| hypothetical protein AAur_pTC10012 [Arthrobacter aurescens TC1]
          Length = 229

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 27/186 (14%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +     + VL     +  G V+    +  +           +    + + +  + G    
Sbjct: 56  QAQGDRVEVLEVTKPVPAGQVIKAGDVHAIQV-------AGVPGAIKASDVDTVVGQRAA 108

Query: 100 VPILKGDPIRLEKLV-----DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
             +++G  +  E +        G   ++  LP G+            V G +   D V+V
Sbjct: 109 SGLVEGQILTPEAVTGDPLPGDGERLVALQLPPGR------------VPGGLAAGDVVNV 156

Query: 155 VMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS-TATLELTPMQAKALVAAQSV 213
           + V    E     T  L   +V+A    + S      G+   T+ +    +  + A  + 
Sbjct: 157 LAV--PQEGAAASTNQLQEPQVLAEGARVQSVGSTAEGNKVVTVLVKDAVSDPVAAYSAA 214

Query: 214 AKLSLV 219
            ++++V
Sbjct: 215 GQVTIV 220


>gi|281412687|ref|YP_003346766.1| flagella basal body P-ring formation protein FlgA [Thermotoga
           naphthophila RKU-10]
 gi|281373790|gb|ADA67352.1| flagella basal body P-ring formation protein FlgA [Thermotoga
           naphthophila RKU-10]
          Length = 286

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K  NV++ K ++ VG V+    +      ++NVF+ +         + E+ G + R  + 
Sbjct: 156 KERNVVVLKRNINVGDVIKEEDVRLE---KKNVFEIY---GEPFFDVSEVVGKISRRYLK 209

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127
           +G  +  + + D  +     ++P 
Sbjct: 210 EGTVLTADMVKDPPDVVKGQVVPA 233


>gi|15964416|ref|NP_384769.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Sinorhizobium meliloti 1021]
 gi|17380481|sp|Q52947|FLGA_RHIME RecName: Full=Flagellar protein flgA; Flags: Precursor
 gi|15073593|emb|CAC45235.1| Flagellar precursor transmembrane protein [Sinorhizobium meliloti
           1021]
          Length = 168

 Score = 37.6 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A++   +A  L+SP     E             +I K  +  G  +  ++LE V     +
Sbjct: 21  AVLFAAMASCLLSPAAALAEPPTA---------VIPKQTIYPGEKLDASMLEVVDVTNPD 71

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           + DG++       ++ E+DG++ +  +L G  I    L ++
Sbjct: 72  LRDGYVR------SIDEVDGMVTKRTLLPGRVILASALREQ 106


>gi|301094568|ref|XP_002896389.1| CCR4-NOT transcription complex subunit, putative [Phytophthora
            infestans T30-4]
 gi|262109572|gb|EEY67624.1| CCR4-NOT transcription complex subunit, putative [Phytophthora
            infestans T30-4]
          Length = 2370

 Score = 37.6 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 60/184 (32%)

Query: 107  PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            P+   K+   G+G   +  P G+            V G              +       
Sbjct: 1241 PLTPGKMKKPGDGFAPAGSPTGR----------EGVAGYGLG--------TSNTGAAAAE 1282

Query: 167  VTVV--------------LSNIRV-----IAIDHNIDSDERVLVGSTATL------ELTP 201
             TV+              L N+ +     +A+D  I      +V  + T+      E+  
Sbjct: 1283 STVIPNLASYVAVNPELPLRNVNLRRLVPLAVDRAIREVISPVVERSVTIACITTREVIL 1342

Query: 202  MQ------------AKALVAAQSVAKLSLV-----LRSIADLNPSSSEDSDVWDVQEEGK 244
                          A  L+ A     L+L+     LR+    +  +   S   D Q+   
Sbjct: 1343 KDFATECDDTKMRKAAHLMVASMSGSLALITAKEPLRNAIGTHLRALLPSSAGDPQQLEH 1402

Query: 245  EIQI 248
             IQI
Sbjct: 1403 VIQI 1406


>gi|325001320|ref|ZP_08122432.1| hypothetical protein PseP1_21279 [Pseudonocardia sp. P1]
          Length = 86

 Score = 37.6 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           +       VL++  DLA G+ + P  L   A+P   V  
Sbjct: 47 PDAADDRAGVLVAARDLAPGVPLEPADLTVTAWPPALVPA 86


>gi|225351088|ref|ZP_03742111.1| hypothetical protein BIFPSEUDO_02674 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158544|gb|EEG71786.1| hypothetical protein BIFPSEUDO_02674 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 229

 Score = 37.6 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 20/122 (16%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           + A V   +AM                       V+I+   +A G V+T + L     P 
Sbjct: 40  LLAAVCAGLAMF--------AALQCVRLTISTQPVVIAAQPIAKGSVITADSLALRDLPY 91

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAAT 133
           +        D        +  G++ +V + +G  +             S ++ +G     
Sbjct: 92  DKALRNVFHDCA------DAVGLIAQVDVAEGGIVTST------MARASPVVSEGYTVIE 139

Query: 134 MD 135
           + 
Sbjct: 140 VR 141


>gi|153950687|ref|YP_001399630.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis IP 31758]
 gi|152962182|gb|ABS49643.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 272

 Score = 37.6 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 132 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 185

Query: 95  GVLVRVPILKGDPIRLEKLVDR 116
           G+ ++  I +   +   +L   
Sbjct: 186 GLTIKRRIRQLQAVIPSQLEQP 207


>gi|153001478|ref|YP_001367159.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           baltica OS185]
 gi|151366096|gb|ABS09096.1| SAF domain protein [Shewanella baltica OS185]
          Length = 235

 Score = 37.6 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   LA G +++P+ +E     + ++     DD        +L GV V+  + K +
Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSLRGAEFDDPS------KLAGVRVKRRVSKDN 167

Query: 107 PIRLEKL 113
           PI    L
Sbjct: 168 PILSNNL 174


>gi|170288993|ref|YP_001739231.1| flagella basal body P-ring formation protein FlgA [Thermotoga sp.
           RQ2]
 gi|170176496|gb|ACB09548.1| flagella basal body P-ring formation protein FlgA [Thermotoga sp.
           RQ2]
          Length = 286

 Score = 37.6 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K  NV++ K ++ VG V+    +      ++NVF+ +         + E+ G + R  + 
Sbjct: 156 KERNVVVLKRNINVGDVIKEEDVRLE---KKNVFEIY---GEPFFDVSEVVGKISRRYLK 209

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127
           +G  +  + + D  +     ++P 
Sbjct: 210 EGTVLTADMVKDPPDVVKGQVVPA 233


>gi|301758268|ref|XP_002914976.1| PREDICTED: sialic acid synthase-like [Ailuropoda melanoleuca]
 gi|281341260|gb|EFB16844.1| hypothetical protein PANDA_002918 [Ailuropoda melanoleuca]
          Length = 359

 Score = 37.6 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +  R +     Q         AK    +++K  +  G V+T ++L            G+ 
Sbjct: 268 LVERAMGSPTKQLLPCEIACNAKLGKSVVAKVKIPEGTVLTLDMLTVKV----GEPKGY- 322

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
                P  +  L G  V V + + D I  E + + G
Sbjct: 323 ----PPEDIFNLVGKKVLVTVEEDDTIMEESVENHG 354


>gi|158292197|ref|XP_313756.4| AGAP004460-PA [Anopheles gambiae str. PEST]
 gi|157017321|gb|EAA09258.5| AGAP004460-PA [Anopheles gambiae str. PEST]
          Length = 377

 Score = 37.6 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           + A++ + PHH Q  E       K    L+   DL  G V+T + ++        V +  
Sbjct: 294 LAALKEIDPHHRQLLECERPCYNKLGKSLVYASDLNCGTVLTESNVQVK------VSE-- 345

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIR 109
                 P     + G  V+  + K DPI 
Sbjct: 346 -PKGLSPRLYDSVVGRTVKCAVFKDDPIL 373


>gi|332162905|ref|YP_004299482.1| flagella basal body P-ring formation protein FlgA [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667135|gb|ADZ43779.1| Flagella basal body P-ring formation protein FlgA [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863355|emb|CBX73478.1| hypothetical protein YEW_ES20730 [Yersinia enterocolitica W22703]
          Length = 234

 Score = 37.6 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E  +T  P  ++ V ++K  L  G +V P+ +E           G+I D        E+ 
Sbjct: 94  EVAVTVKPDIYLPVWVAKNTLERGKLVVPDDIELKKKNISTAQGGYITDP------DEIV 147

Query: 95  GVLVRVPILKGDPIRLEKLVDR 116
           G  V+  I     +   +L   
Sbjct: 148 GFTVKRRIRNLQVVIPSQLEQP 169


>gi|170741837|ref|YP_001770492.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           sp. 4-46]
 gi|168196111|gb|ACA18058.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           sp. 4-46]
          Length = 176

 Score = 37.6 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           +    +  G ++   +L   +FP       F       +A   + G + R  +L G+P+ 
Sbjct: 52  VPAVTIYPGDMIKETMLREQSFP-----PTFRARAAVIDAPLAIVGRVARRTLLPGEPVP 106

Query: 110 LEKLVDR 116
           +  + D 
Sbjct: 107 VNAVDDP 113


>gi|145596968|ref|YP_001161265.1| SAF domain-containing protein [Salinispora tropica CNB-440]
 gi|145306305|gb|ABP56887.1| SAF domain [Salinispora tropica CNB-440]
          Length = 219

 Score = 37.6 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 12/151 (7%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
               +A+ L++   + +   +    A    + ++   + VG VV+ + L  V      V 
Sbjct: 30  GLLGLAVLLIALGGLGSAFAVNAVRATGSYLAVA-RPVEVGRVVSADDLVTVQ-----VA 83

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
            G            ++ G   +V ++ G  + +E+L D+       LL  G++  ++ + 
Sbjct: 84  GGAGLSPVPAGQQGDVVGKRAKVSLVPGTLLTMEQLTDKP------LLAPGQQQLSVGLE 137

Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
           ++ A    + P D V +V   + ++ + T T
Sbjct: 138 LAQAPARRLHPGDKVSLVSTPAGNDDRSTTT 168


>gi|289178132|gb|ADC85378.1| hypothetical protein BIF_01377 [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 223

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 42/217 (19%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
           R M + +S   AL   +  + L +                    +++  DL  G+V+   
Sbjct: 37  RHMLLALSVGVALFCTLQCVALATATRQA---------------VVAARDLDAGLVIATG 81

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            +E V  P+ +     +          +  G++ +  I KGD +    + +         
Sbjct: 82  DVEMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDVGELPQ------ 129

Query: 125 LPKGKRAATMDISISSAVGGMIKP-NDHVDVVMVR---SLSERKPTVTVVLSNIRVIAID 180
           +P+      + +     +G    P    V++   +     +   P   VV S+  V+A  
Sbjct: 130 VPEHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASPEGCVVSSHAVVMA-- 183

Query: 181 HNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKL 216
                D+    GST T + ++ ++A  ++AAQ    L
Sbjct: 184 -QPRLDD---TGSTVTQMAMSAVEALQVLAAQEHGTL 216


>gi|291516490|emb|CBK70106.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium
           longum subsp. longum F8]
          Length = 189

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 62/224 (27%), Gaps = 43/224 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R +   +    A++ GI A+  V                K   ++++   +  G ++ 
Sbjct: 4   ALRRLTAALCVGLAVLFGIEAVLAV---------------VKTEPMVVAARSIRRGDIIL 48

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117
              ++    P       +         ++++ G + ++ I   DPI     R   +   G
Sbjct: 49  AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L          +             D V +V              +  N  V+
Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +                +  + P  A  ++  Q    +  V+R
Sbjct: 146 NVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189


>gi|283850831|ref|ZP_06368117.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B]
 gi|283573754|gb|EFC21728.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B]
          Length = 371

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 18/112 (16%)

Query: 15  FALVAGII-----AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           FA +AG++     AMR+   H    E       AK    L+   DL  G V+ P  L   
Sbjct: 261 FAAMAGMVREAEAAMRVARKHLFPGE---AAAAAKLRKSLVFARDLPAGHVLGPEDLTAK 317

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
                            P     + G  +   + + +P+  E+L    +  +
Sbjct: 318 ----------CPGTGLSPVLGDAVAGCRLLAKVRQDEPVAWERLAAPESSDV 359


>gi|15644289|ref|NP_229341.1| flagellar protein FlgA, putative [Thermotoga maritima MSB8]
 gi|4982108|gb|AAD36608.1|AE001800_18 flagellar protein FlgA, putative [Thermotoga maritima MSB8]
          Length = 286

 Score = 37.2 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K  NV++ K ++ VG V+    +      + NVF+ +         + E+ G + R  + 
Sbjct: 156 KERNVVVLKRNINVGDVIKEEDVRLE---KRNVFEIY---GEPFFDVSEVVGKISRRYLK 209

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127
           +G  +  + + D  +     ++P 
Sbjct: 210 EGTVLTADMVKDPPDVVKGQVVPA 233


>gi|169825596|ref|YP_001695771.1| hypothetical protein Bsph_p184 [Lysinibacillus sphaericus C3-41]
 gi|168994873|gb|ACA42412.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 316

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 1   MKL---TRLMGIVVSGVFA--LVAGIIAMRLVSPHHVQTEEVITENPAKFIN-------- 47
           MK+   T+ + I  S   A  L+   +A   +   +V+ +E + +N    +         
Sbjct: 1   MKIRFVTKKLIIAASLGAAAMLLISGVAFYFLYKSNVEKQEELRQNYKDKLAELEYTTEQ 60

Query: 48  ---VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
              V     D+  G ++  ++++    P+  V    + DV 
Sbjct: 61  SELVYTLNTDVDKGQLIHKSMVQPSLVPKNAVPADAMTDVQ 101


>gi|229492883|ref|ZP_04386679.1| SAF domain protein [Rhodococcus erythropolis SK121]
 gi|229320157|gb|EEN85982.1| SAF domain protein [Rhodococcus erythropolis SK121]
          Length = 234

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 34/214 (15%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + +VV  V  ++A + AMR                     +VL+   D+  G V+    L
Sbjct: 50  IALVVVAVIGMLAAVSAMR------------------ATTDVLVLARDVQQGQVIESKDL 91

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
                  +                  + G+     +  G  +    + D+   G      
Sbjct: 92  TVKTVNVD-----ADLGALSAGERGRVIGMSAGTRLPAGSVLMPAAVTDQVVPG------ 140

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
           +G     + +         I P D + VV      +  P    V +  +V ++    ++ 
Sbjct: 141 EGLTMVGITVGYPHLPSEAIVPGDMIRVVDTPREGDDPPVTGPVNTKAQVYSMTVIAEAG 200

Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           E     +T  L +   +A  + A  +  ++S+VL
Sbjct: 201 E-----TTLNLLVPEAEANWVAARAATKRVSIVL 229


>gi|222447129|pdb|3FRN|A Chain A, Crystal Structure Of Flagellar Protein Flga From
           Thermotoga Maritima Msb8
          Length = 278

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K  NV++ K ++ VG V+    +      + NVF+ +         + E+ G + R  + 
Sbjct: 141 KERNVVVLKRNINVGDVIKEEDVRLE---KRNVFEIY---GEPFFDVSEVVGKISRRYLK 194

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127
           +G  +  + + D  +     ++P 
Sbjct: 195 EGTVLTADMVKDPPDVVKGQVVPA 218


>gi|73538108|ref|YP_298475.1| Altronate dehydratase [Ralstonia eutropha JMP134]
 gi|72121445|gb|AAZ63631.1| Altronate dehydratase [Ralstonia eutropha JMP134]
          Length = 507

 Score = 37.2 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 47  NVLISKGDLAVGMVVTPNILEWV-AFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           NVLI++GDLA+G  ++   L      P  + +    I           + G +    I+ 
Sbjct: 14  NVLIARGDLALGQQLSDPALRVRAQVPAGHKIAASAIASGTPVRKYDTVIG-VASRDIVA 72

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAAT-MDISISSAVGGMIKPNDHV 152
           G+ +    L    +        +  RA   +  +  +   G ++P+  V
Sbjct: 73  GEHVHSHNL-KLVDFYRDPAFCQDVRAVEYVPEAERATFMGFVRPDGRV 120


>gi|242071455|ref|XP_002451004.1| hypothetical protein SORBIDRAFT_05g022450 [Sorghum bicolor]
 gi|241936847|gb|EES09992.1| hypothetical protein SORBIDRAFT_05g022450 [Sorghum bicolor]
          Length = 974

 Score = 37.2 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST--ATLE--LTPMQAKALVAAQSVAK 215
                    + +  ++++A+D  I  +  V    T   TLE  L+   A+AL  A +   
Sbjct: 269 DDGEGNFSAIEVEAVQLLAMDQIISPEAAVEKDKTESMTLEPNLSREDARALSNANAAGS 328

Query: 216 LSL 218
            SL
Sbjct: 329 CSL 331


>gi|20559814|gb|AAM27589.1|AF498403_8 ORF_8; similar to NeuB family [Pseudomonas aeruginosa]
          Length = 361

 Score = 37.2 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           + L SP+            A    V ++  D+  GM++T + L            G    
Sbjct: 286 VALGSPYKAPQPSEWDTRQAARQQV-VAARDIEAGMIITRDDLTTAR-------SGH--- 334

Query: 84  VHQPNAMQELDGVLVRVPILKGD 106
              P ++ EL G   +   L G+
Sbjct: 335 GLPPTSLWELVGSTSKRAFLAGE 357


>gi|170682474|ref|YP_001742369.1| lateral flagellar P-ring addition protein LfgA [Escherichia coli
           SMS-3-5]
 gi|170520192|gb|ACB18370.1| lateral flagellar P-ring addition protein LfgA [Escherichia coli
           SMS-3-5]
          Length = 245

 Score = 37.2 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           M          +  +   P   + V+++K  +A    +T N +E   +            
Sbjct: 96  MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QR 149

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                 + +  G+  +  +  G PI  E+LV  
Sbjct: 150 RDVLMELDDAIGLSSKHALQPGRPITKEELVSP 182


>gi|146276521|ref|YP_001166680.1| PII uridylyl-transferase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554762|gb|ABP69375.1| metal dependent phosphohydrolase [Rhodobacter sphaeroides ATCC
           17025]
          Length = 930

 Score = 37.2 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 11/114 (9%)

Query: 143 GGMIKPNDHV---DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLEL 199
            G+I P   +   + +    L+E            R IA+    ++        + T E 
Sbjct: 16  SGLILPRSRIIDPEALTRSILAEIDAVSPTDPKAARAIAVRQMTEAKAAGNRALSETFEA 75

Query: 200 TPMQAKALVAAQSV---AKLSLVLRSIADL-----NPSSSEDSDVWDVQEEGKE 245
            P +A+ L+ AQ+V     ++  LR   +      NP+ +E   V  V   G+ 
Sbjct: 76  RPREARGLIRAQAVLTDGLVTTALRVACERLHPLPNPTEAERVAVLAVGGYGRA 129


>gi|108807169|ref|YP_651085.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Antiqua]
 gi|108812487|ref|YP_648254.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Nepal516]
 gi|145598614|ref|YP_001162690.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Pestoides F]
 gi|108776135|gb|ABG18654.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Nepal516]
 gi|108779082|gb|ABG13140.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Antiqua]
 gi|145210310|gb|ABP39717.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Pestoides F]
          Length = 251

 Score = 37.2 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 131 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 184

Query: 110 LEKL 113
              L
Sbjct: 185 RNML 188


>gi|292489137|ref|YP_003532024.1| flagella basal body P-ring formation protein FlgA [Erwinia
           amylovora CFBP1430]
 gi|292900256|ref|YP_003539625.1| flagella basal body P-ring formation protein [Erwinia amylovora
           ATCC 49946]
 gi|291200104|emb|CBJ47230.1| flagella basal body P-ring formation protein [Erwinia amylovora
           ATCC 49946]
 gi|291554571|emb|CBA22188.1| Flagella basal body P-ring formation protein flgA precursor
           [Erwinia amylovora CFBP1430]
 gi|312173295|emb|CBX81550.1| Flagella basal body P-ring formation protein flgA precursor
           [Erwinia amylovora ATCC BAA-2158]
          Length = 234

 Score = 37.2 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++K +L  G V+  + +E  A   ++   G + D++Q      + G      +  G PI 
Sbjct: 112 VAKKNLPAGSVIRADDIETHAGSLDHQPAGILFDINQ------IVGQTTTRALNAGSPIV 165

Query: 110 LEKL 113
             +L
Sbjct: 166 QNQL 169


>gi|157283957|ref|YP_001468225.1| SAF domain-containing protein [Kineococcus radiotolerans SRS30216]
 gi|151363099|gb|ABS06101.1| SAF domain protein [Kineococcus radiotolerans SRS30216]
          Length = 252

 Score = 37.2 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 8/134 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL----DGVLVRVPI 102
           +VL    D+  G  +T   L               +   Q      +    +G L+   +
Sbjct: 90  DVLALARDVPAGQKITAEDLRVAEVNGSGFSAVIKEHADQVVGSTAISSLPEGALLTNKM 149

Query: 103 LKGDPIRLEKLVDRGN----GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
            + DPI     V  G     G + S    G+R A   + + +    +      V+  +V 
Sbjct: 150 YQDDPIPEPGNVIVGASLKPGSVPSDAQPGRRVAVWKVGVVNGNAPVADAEQIVESALVT 209

Query: 159 SLSERKPTVTVVLS 172
            +S        +LS
Sbjct: 210 EVSTDVAGGNTLLS 223


>gi|22126394|ref|NP_669817.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis KIM 10]
 gi|45441413|ref|NP_992952.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis biovar Microtus str. 91001]
 gi|162419453|ref|YP_001606469.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Angola]
 gi|165926043|ref|ZP_02221875.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938691|ref|ZP_02227246.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010841|ref|ZP_02231739.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166210809|ref|ZP_02236844.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401018|ref|ZP_02306521.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420243|ref|ZP_02311996.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425844|ref|ZP_02317597.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469716|ref|ZP_02334420.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           FV-1]
 gi|270486649|ref|ZP_06203723.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           KIM D27]
 gi|294504034|ref|YP_003568096.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis
           Z176003]
 gi|21959381|gb|AAM86068.1|AE013854_4 putative flagella basal body P-ring formation protein [Yersinia
           pestis KIM 10]
 gi|45436274|gb|AAS61829.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Microtus str. 91001]
 gi|162352268|gb|ABX86216.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Angola]
 gi|165913305|gb|EDR31927.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922247|gb|EDR39424.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990185|gb|EDR42486.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207989|gb|EDR52469.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961938|gb|EDR57959.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049407|gb|EDR60815.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055243|gb|EDR65040.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|262361780|gb|ACY58501.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis
           D106004]
 gi|262366084|gb|ACY62641.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis
           D182038]
 gi|270335153|gb|EFA45930.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           KIM D27]
 gi|294354493|gb|ADE64834.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis
           Z176003]
          Length = 254

 Score = 37.2 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 134 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 187

Query: 110 LEKL 113
              L
Sbjct: 188 RNML 191


>gi|88855598|ref|ZP_01130261.1| putative membrane/secreted protein [marine actinobacterium
           PHSC20C1]
 gi|88814922|gb|EAR24781.1| putative membrane/secreted protein [marine actinobacterium
           PHSC20C1]
          Length = 215

 Score = 37.2 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 21/156 (13%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R   I +    A+   ++   +V          +       I V  +   L  G  V  
Sbjct: 12  ARARAIALDPRLAIGIVLVVASIVG------VVSLVATADDSIEVYAAGAPLTPGDRVLS 65

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           + L   +    +    +I     P     ++G +   PI  G+ I    L       L++
Sbjct: 66  SDLVIRSVKLNDASQYYIARGELP-----VEGFIATRPIGAGELIPASSLGSHDGLSLTA 120

Query: 124 LL--PKGKRAATMD--------ISISSAVGGMIKPN 149
           ++  P+G  A T+          S  +  GG   P 
Sbjct: 121 VVVSPQGGLAETVSSGASVDVWASAETEAGGYDAPG 156


>gi|88858149|ref|ZP_01132791.1| putative flagellar biosynthesis; assembly of basal-body periplasmic
           P-ring [Pseudoalteromonas tunicata D2]
 gi|88819766|gb|EAR29579.1| putative flagellar biosynthesis; assembly of basal-body periplasmic
           P-ring [Pseudoalteromonas tunicata D2]
          Length = 235

 Score = 37.2 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
           + +     +   ++I++  +A G ++T   +     P   V +  IDD+        L G
Sbjct: 103 QYVQVRTTELAEIVITQNPIAKGQLITAQDIVTEMRPTHLVRNQNIDDIKM------LIG 156

Query: 96  VLVRVPILKGDPIRLEKL 113
                 I  G+PI L ++
Sbjct: 157 SRATRSIRAGNPINLNQI 174


>gi|291613034|ref|YP_003523191.1| flagella basal body P-ring formation protein FlgA [Sideroxydans
           lithotrophicus ES-1]
 gi|291583146|gb|ADE10804.1| flagella basal body P-ring formation protein FlgA [Sideroxydans
           lithotrophicus ES-1]
          Length = 238

 Score = 37.2 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  +    +++L++   LA   V++ +         E    G + D  Q        G  
Sbjct: 107 VQADIKVTVDMLVASRPLAQNTVLSASDFRLQN--GELGQPGILIDPQQA------IGKT 158

Query: 98  VRVPILKGDPIRLEKLVDR 116
           +R PI  G  +R + L   
Sbjct: 159 LRFPIGAGQVLRQDMLRAP 177


>gi|217972592|ref|YP_002357343.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           baltica OS223]
 gi|217497727|gb|ACK45920.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica OS223]
          Length = 235

 Score = 37.2 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   LA G +++P+ +E     + ++         + +   +L GV V+  + K +
Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSL------RGAEFDDPGKLAGVRVKRRVSKDN 167

Query: 107 PIRLEKL 113
           PI    L
Sbjct: 168 PILSNNL 174


>gi|328908302|gb|EGG28061.1| SAF domain protein [Propionibacterium sp. P08]
          Length = 219

 Score = 37.2 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 14/129 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
              +    V+++   +  G V+  + L  +      +        H+  A+ +++G    
Sbjct: 55  ATSSSGREVVVAARAIEGGRVIQRSDLRTIRIDPGILP-------HEAAALAQVEGRQAS 107

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           V I +G  +    ++     G       GK    + ++ SS V GM++    V VV    
Sbjct: 108 VRITEGTILTTSAVLSGSATG------SGKALVGIHLADSSMV-GMLQVGQQVSVVSPSE 160

Query: 160 LSERKPTVT 168
                    
Sbjct: 161 DGTPHVLTR 169


>gi|186895110|ref|YP_001872222.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis PB1/+]
 gi|186698136|gb|ACC88765.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis PB1/+]
          Length = 259

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 139 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 192

Query: 110 LEKL 113
              L
Sbjct: 193 RNML 196


>gi|254421375|ref|ZP_05035093.1| NeuB family [Synechococcus sp. PCC 7335]
 gi|196188864|gb|EDX83828.1| NeuB family [Synechococcus sp. PCC 7335]
          Length = 749

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++K DLA G V+T  +++  + P + +         QPN   EL G+ ++  I  GD  
Sbjct: 406 LVTKCDLAPGDVITAEMIDVRS-PGQGL---------QPNRKAELIGLRIKRSIQAGDFF 455

Query: 109 RLEKL 113
               L
Sbjct: 456 FPSDL 460


>gi|255546923|ref|XP_002514519.1| Phospholipid-transporting ATPase, putative [Ricinus communis]
 gi|223546123|gb|EEF47625.1| Phospholipid-transporting ATPase, putative [Ricinus communis]
          Length = 1181

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLEL-TPMQAKALVAAQSVA 214
           +P   V+   +R++A+ H   +DE    G   + E  +P +A  ++AA+ + 
Sbjct: 507 EPNARVIQQFLRLLAVCHTAIADEDENTGK-VSYEAESPDEAAFVIAARELG 557


>gi|108763009|ref|YP_634642.1| adventurous gliding motility protein AgmG [Myxococcus xanthus DK
           1622]
 gi|27804839|gb|AAO22879.1| adventurous gliding motility protein G [Myxococcus xanthus]
 gi|108466889|gb|ABF92074.1| adventurous gliding motility protein AgmG [Myxococcus xanthus DK
           1622]
          Length = 712

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
            W+ +  E +    + D  +P        + + V +L+G+P     L       L + + 
Sbjct: 62  RWMQWLRERIPAHALVDASEPEVSAADSRLALMVRVLEGEPAMRAALTR-----LVAAVF 116

Query: 127 KGKRAATM--DISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS 172
           +G R   +   + + +  G   + +D +   ++ +  ER     ++L 
Sbjct: 117 EGSRGLKLFAQVGLPAGQGFFAEASDRLARSLLPAPPERGKLSELLLR 164


>gi|312133843|ref|YP_004001182.1| flga [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773134|gb|ADQ02622.1| FlgA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 189

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 62/224 (27%), Gaps = 43/224 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R +   +    A++ G+ A+  V                +   ++++   +  G ++ 
Sbjct: 4   ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 48

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117
              ++    P       +         ++++ G + ++ I   DPI     R   +   G
Sbjct: 49  AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L          +             D V +V              +  N  V+
Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +                +  + P  A  ++  Q    +  V+R
Sbjct: 146 NVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189


>gi|51596007|ref|YP_070198.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis IP 32953]
 gi|51589289|emb|CAH20910.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis IP 32953]
          Length = 232

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 112 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 165

Query: 110 LEKL 113
              L
Sbjct: 166 RNML 169


>gi|149366255|ref|ZP_01888290.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           CA88-4125]
 gi|218928918|ref|YP_002346793.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis CO92]
 gi|229896238|ref|ZP_04511408.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Pestoides A]
 gi|229897173|ref|ZP_04512329.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229897899|ref|ZP_04513050.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902869|ref|ZP_04517986.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Nepal516]
 gi|115347529|emb|CAL20438.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           CO92]
 gi|149292668|gb|EDM42742.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           CA88-4125]
 gi|229680316|gb|EEO76415.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Nepal516]
 gi|229688940|gb|EEO81005.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229693510|gb|EEO83559.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701161|gb|EEO89190.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Pestoides A]
 gi|320015471|gb|ADV99042.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 232

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 112 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 165

Query: 110 LEKL 113
              L
Sbjct: 166 RNML 169


>gi|170725949|ref|YP_001759975.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           woodyi ATCC 51908]
 gi|169811296|gb|ACA85880.1| flagella basal body P-ring formation protein FlgA [Shewanella
           woodyi ATCC 51908]
          Length = 235

 Score = 36.8 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++++  L  G +++ + +        N+         Q + ++++ G  V+  I    
Sbjct: 114 PVVVARETLGPGDLLSNDDVIIEYVDRTNL------RGQQFDDIKQVVGTRVKRRIPPNQ 167

Query: 107 PIRLEKL 113
           PI    L
Sbjct: 168 PIFSSNL 174


>gi|302038298|ref|YP_003798620.1| putative n-acetylneuraminate synthase [Candidatus Nitrospira
           defluvii]
 gi|300606362|emb|CBK42695.1| putative N-acetylneuraminate synthase [Candidatus Nitrospira
           defluvii]
          Length = 348

 Score = 36.8 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           LV G+ A+        Q      E  A     ++S+  +  G V+TP ++ WV  P    
Sbjct: 257 LVKGVDAVFRGRGAERQIFPEEREIVAWARESVVSEVAIPRGTVITPTMV-WVKRPSPG- 314

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
             G +        ++++ G + +  I K   IR E+L
Sbjct: 315 -PGAV----AAKDLKKVIGKVAKTDIPKDSQIRWEQL 346


>gi|160876209|ref|YP_001555525.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           baltica OS195]
 gi|160861731|gb|ABX50265.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica OS195]
 gi|315268399|gb|ADT95252.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica OS678]
          Length = 235

 Score = 36.8 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   LA G +++P+ +E     + ++         + +   +L GV V+  + K  
Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSL------RGAEFDDPSKLAGVRVKRRVSKDY 167

Query: 107 PIRLEKL 113
           PI    L
Sbjct: 168 PILSNNL 174


>gi|322691896|ref|YP_004221466.1| hypothetical protein BLLJ_1707 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456752|dbj|BAJ67374.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 189

 Score = 36.8 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 43/224 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R +   +    A++ GI A+  V                +   ++++   +  G ++ 
Sbjct: 4   ALRRLTAALCVGLAVLFGIEAVLAV---------------VETEPMVVAARSIRRGDIIL 48

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117
              ++    P       +         ++++ G + ++ I   DPI     R   +   G
Sbjct: 49  AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L          +             D V +V              +  N  V+
Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +                +  + P  A  ++  Q    +  V+R
Sbjct: 146 NVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189


>gi|307327609|ref|ZP_07606794.1| SAF domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306886721|gb|EFN17722.1| SAF domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 228

 Score = 36.8 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 35/223 (15%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R     +  V A++ G+ A   V+    + +            VL    D+  G  +
Sbjct: 30  RERRWSVAALCVVLAVLCGLGAAAAVTSASDRKQ------------VLAVARDVPAGQAL 77

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T   L         V                + G    V + KG  +   +L        
Sbjct: 78  TAADLSVAE-----VSSDAALTPVPAADKAGVIGKRPAVDLRKGGLLTTSQLAGGTG--- 129

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSNIRV 176
              L   ++   + I    A  G + P D V  V   +  + +          + +    
Sbjct: 130 ---LGDDQQQVGVQIKRGQAPAGTLAPGDKVLAVSTPAQGDEQAAKDDGPPSTIEA---- 182

Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            A+      D    V     L +       L    ++ +++LV
Sbjct: 183 -AVVSVSRPDASGTVV--VNLAVAATDGPTLATRAAMGRIALV 222


>gi|78067000|ref|YP_369769.1| Pirin-like protein [Burkholderia sp. 383]
 gi|77967745|gb|ABB09125.1| Pirin-like protein [Burkholderia sp. 383]
          Length = 290

 Score = 36.8 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 21/71 (29%)

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
            +   P + V      D      +   +   VR  I    PI  +    +    ++  +P
Sbjct: 139 RYQEIPADRVPTATSPDGRARVRVIAGEAFGVRAAIETRTPILYQHFTLQPGATVTQTVP 198

Query: 127 KGKRAATMDIS 137
            G R     I 
Sbjct: 199 AGYRVFAYPID 209


>gi|307311558|ref|ZP_07591199.1| flagella basal body P-ring formation protein FlgA [Sinorhizobium
           meliloti BL225C]
 gi|307318913|ref|ZP_07598344.1| flagella basal body P-ring formation protein FlgA [Sinorhizobium
           meliloti AK83]
 gi|306895327|gb|EFN26082.1| flagella basal body P-ring formation protein FlgA [Sinorhizobium
           meliloti AK83]
 gi|306899575|gb|EFN30204.1| flagella basal body P-ring formation protein FlgA [Sinorhizobium
           meliloti BL225C]
          Length = 157

 Score = 36.8 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A++   +A  L+SP     E             +I K  +  G  +  ++LE V     +
Sbjct: 10  AVLFAAMASCLLSPAAALAEPPTA---------VIPKQTIYPGEKLDASMLEVVDVTNPD 60

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           + DG++       ++ E+DG++ +  +L G  I    L ++
Sbjct: 61  LRDGYVR------SIDEVDGMVTKRTLLPGRVILASALREQ 95


>gi|304409984|ref|ZP_07391603.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica OS183]
 gi|307302303|ref|ZP_07582061.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica BA175]
 gi|304351393|gb|EFM15792.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica OS183]
 gi|306914341|gb|EFN44762.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica BA175]
          Length = 235

 Score = 36.8 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   LA G +++P+ +E     + ++     DD        +L GV V+  + K  
Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSLRGAEFDDPS------KLAGVRVKRRVSKDY 167

Query: 107 PIRLEKL 113
           PI    L
Sbjct: 168 PILSNNL 174


>gi|188584241|ref|YP_001927686.1| signal transduction histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347739|gb|ACB83151.1| signal transduction histidine kinase [Methylobacterium populi
           BJ001]
          Length = 1111

 Score = 36.8 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           S +   G+RA ++    +S VGG +     V  ++ RS +   P  T+V   I       
Sbjct: 782 SIVARTGERAESVS-EYASLVGGRLLTLARVQALLTRSANAGVPVATIVHDEID----AQ 836

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210
            +  D+  L G     EL+P  A+ L  A
Sbjct: 837 ALREDQYDLSGPEV--ELSPKAAEILTLA 863


>gi|126175152|ref|YP_001051301.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           baltica OS155]
 gi|125998357|gb|ABN62432.1| SAF domain [Shewanella baltica OS155]
          Length = 235

 Score = 36.8 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   LA G +++P+ +E     + ++     DD        +L GV V+  + K  
Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSLRGAEFDDPS------KLAGVRVKRRVSKDY 167

Query: 107 PIRLEKL 113
           PI    L
Sbjct: 168 PILSNNL 174


>gi|226357812|ref|YP_002787552.1| Glutamine--fructose-6-phosphate transaminase [Deinococcus deserti
           VCD115]
 gi|226320055|gb|ACO48048.1| putative Glutamine--fructose-6-phosphate transaminase [Deinococcus
           deserti VCD115]
          Length = 348

 Score = 36.8 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 24/132 (18%)

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV------LSNIRVIAI 179
           P    A T+    S      +K    ++  +   ++   P+V  +      L    V+A+
Sbjct: 46  PPKM-AVTIARGSSDHACSFLKYG--LETQLSLPVASIGPSVHTLYGAQLDLQGALVLAV 102

Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
             +                 +P   + L  A+    L++ L ++ D   + + +  +   
Sbjct: 103 SQSG---------------ASPDVVETLRMARQRGGLTVALVNVEDSALAHAAEFVLPLQ 147

Query: 240 QEEGKEIQIIKA 251
             E + +   K+
Sbjct: 148 CGEERAVAATKS 159


>gi|146284147|ref|YP_001174300.1| sialic acid synthase [Pseudomonas stutzeri A1501]
 gi|145572352|gb|ABP81458.1| sialic acid synthase [Pseudomonas stutzeri A1501]
          Length = 350

 Score = 36.8 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 53  GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
            DL  G  +TP+ +        +V  G+      P  + +L G ++R  +    P+RL+
Sbjct: 298 KDLQAGERITPDAVR-------SVRPGY---GLAPRLLDQLMGKVLRQDVKANMPVRLD 346


>gi|311694437|gb|ADP97310.1| flagella basal body P-ring formation protein FlgA [marine bacterium
           HP15]
          Length = 222

 Score = 36.8 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   L  G  +T  +L   +    +   G I D  Q        G+ VR  +  G  +
Sbjct: 100 LVAARPLTRGERITEGLLAKQSVEINSSRRGVITDSKQA------IGMEVRRAVNAGSLV 153

Query: 109 RLEKLVDR 116
             + L   
Sbjct: 154 TPDMLSAP 161


>gi|292490649|ref|YP_003526088.1| flagella basal body P-ring formation protein FlgA [Nitrosococcus
           halophilus Nc4]
 gi|291579244|gb|ADE13701.1| flagella basal body P-ring formation protein FlgA [Nitrosococcus
           halophilus Nc4]
          Length = 221

 Score = 36.8 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   L  G  ++   +       E +  G++ D  Q      + G  ++ P+  G 
Sbjct: 97  KVVVATHPLVPGSPLSLADIHLERRNLEQLRQGYLRDPAQ------VAGKRLKRPLGLGA 150

Query: 107 PIRLE-----KLVDRGN 118
            I  E     KLV RG 
Sbjct: 151 VITPEVLEIPKLVRRGQ 167


>gi|238751758|ref|ZP_04613246.1| Flagella basal body P-ring formation protein flgA [Yersinia rohdei
           ATCC 43380]
 gi|238710029|gb|EEQ02259.1| Flagella basal body P-ring formation protein flgA [Yersinia rohdei
           ATCC 43380]
          Length = 224

 Score = 36.8 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +TP  +       + +  G + + +         G +    I  G P+ 
Sbjct: 104 VAARQLASGAKITPQDIVMKQGRLDTLPPGALLEPNFA------QGAVSLRQINAGQPLT 157

Query: 110 LEKL 113
              L
Sbjct: 158 RNML 161


>gi|19552105|ref|NP_600107.1| hypothetical protein NCgl0844 [Corynebacterium glutamicum ATCC
           13032]
          Length = 184

 Score = 36.8 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           ++   ++  G  V  + L   A P   +           +++ ++ G++    +  G+  
Sbjct: 13  VVIVQEIPAGTKVEASDLGLQAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIA 66

Query: 109 RLEKLVD 115
              + V 
Sbjct: 67  TKPRFVG 73


>gi|114320051|ref|YP_741734.1| flageller protein FlgA [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226445|gb|ABI56244.1| flagellar protein FlgA [Alkalilimnicola ehrlichii MLHE-1]
          Length = 238

 Score = 36.8 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 17/133 (12%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           ++      + VL++   L  G  +  + +        ++   +  +         L G  
Sbjct: 105 VSARVDTQVEVLVAARPLRRGERLRADSVTTERRQLASLHRPYETEAEH------LIGKE 158

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS----ISSAVGGMIKPNDHVD 153
           +R  + +GD I    L          L+ +G R+ T+         +  G  ++     D
Sbjct: 159 LRRSLRRGDLIAGNALAAP------QLVQRG-RSVTLRAGGGRVQVTGQGKALESGVLGD 211

Query: 154 VVMVRSLSERKPT 166
           +V V + S  +  
Sbjct: 212 IVRVEAGSSGRVV 224


>gi|160879933|ref|YP_001558901.1| extracellular solute-binding protein [Clostridium phytofermentans
          ISDg]
 gi|160428599|gb|ABX42162.1| extracellular solute-binding protein family 1 [Clostridium
          phytofermentans ISDg]
          Length = 462

 Score = 36.8 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMR----------LVSPHHVQTEEVITENPAKFINVLI 50
          MK T  + +V++ V +L AG                  P +  ++E  TE+P + + + +
Sbjct: 1  MKKTSRILLVLALVISLFAGCGKKNTTGEGTTPAPTAGPTNEASKETPTESPKQNVTIKV 60

Query: 51 SKGDLAVGM 59
          +  + A G 
Sbjct: 61 AAIETAYGA 69


>gi|163852463|ref|YP_001640506.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           extorquens PA1]
 gi|163664068|gb|ABY31435.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           extorquens PA1]
          Length = 348

 Score = 36.8 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           LV     Q    +     +   V +    L  G  +    L     P + V +       
Sbjct: 189 LVVLGERQASLRVAGVAVETREVAVLTRSLNRGEAIASADLTVERRPRDGVPN------D 242

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              A   + G + + P+  G  +R   +    
Sbjct: 243 VQGAPTLVVGQVAQRPLSAGAVLRSGDVAPPD 274


>gi|220910291|ref|YP_002485602.1| N-acetylneuraminate synthase [Cyanothece sp. PCC 7425]
 gi|219866902|gb|ACL47241.1| N-acetylneuraminate synthase [Cyanothece sp. PCC 7425]
          Length = 748

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L+   DL  G V+T  +++  +        G      QPN   EL G+  + P   GD  
Sbjct: 406 LVINCDLQPGQVITAEMIDVKS-------PG---RGLQPNRKVELIGLKAKRPFKAGDFF 455

Query: 109 RLEKL 113
               L
Sbjct: 456 FPSDL 460


>gi|15679046|ref|NP_276163.1| hypothetical protein MTH1028 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622131|gb|AAB85524.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 441

 Score = 36.4 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 110 LEKLVDRGNGGL---SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-- 164
            +K V + +  +   + +      A  + I+   A GG+I   D VDV + ++ +     
Sbjct: 241 AKKFVSQADATVLANTQIQTPDTVAVPIMITRLQAAGGLISVGDMVDVYLNQNATGNNTS 300

Query: 165 -PTVTVVLSNIRVIAIDHNIDS---DERVLVGSTATLE----------LTPMQAKALVAA 210
             T T  +S   V+AI  + DS   D R+L     TL            +    + L+ A
Sbjct: 301 AATSTPRISGATVLAILRSKDSGAVDARILNTQRLTLNSITSQSENERASSTDVEQLLRA 360

Query: 211 QSVAKL 216
            +   L
Sbjct: 361 AASGGL 366


>gi|331671800|ref|ZP_08372596.1| SAF domain protein [Escherichia coli TA280]
 gi|331070789|gb|EGI42148.1| SAF domain protein [Escherichia coli TA280]
          Length = 252

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           M          +  +   P   + V+++K  +A    +T N +E   +         + D
Sbjct: 103 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSVVARDTPLTANDVELKPYNVSAQRRNVLMD 162

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                   +  G   +  +  G PI  E+LV  
Sbjct: 163 P------DDAIGFSSKHALQPGRPITKEELVSP 189


>gi|291085839|ref|ZP_06354200.2| putative flagellar protein [Citrobacter youngae ATCC 29220]
 gi|291070006|gb|EFE08115.1| putative flagellar protein [Citrobacter youngae ATCC 29220]
          Length = 260

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +   P   I V++ K  +A   V+T + L+   F   N  +G + +      M E  G+ 
Sbjct: 125 VAVRPDVSIPVVMPKSLIARDTVITADDLQLKKFNISNQREGLMTN------MDEAIGLT 178

Query: 98  VRVPILKGDPIRLEKLVDR 116
            +  +  G PI   +LV  
Sbjct: 179 SKRALQPGKPITRSELVLP 197


>gi|59889777|emb|CAH19132.1| Lateral flagellar P-ring addition protein (FlgA-like) [Escherichia
           coli]
 gi|284920041|emb|CBG33097.1| lateral flagellar P-ring addition protein (FlgA-like) [Escherichia
           coli 042]
          Length = 245

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           M          +  +   P   + V+++K  +A    +T N +E   +            
Sbjct: 96  MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QR 149

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                 + +  G+  +  +  G PI  E+LV  
Sbjct: 150 REVLMELDDAIGLSSKHALQPGKPITKEELVSP 182


>gi|145297253|ref|YP_001140094.1| sialic acid synthase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850025|gb|ABO88346.1| sialic acid synthase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 348

 Score = 36.4 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 18/111 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + L  ++ S   A  A  +A   ++           +    F   L    D+A G V
Sbjct: 250 MEPSELTELIASVNTAHAALGVADYQLTQS--------EQGNRAFRRSLYLVKDIAAGEV 301

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
           +T   ++ V  P   +          P     L G  V   +    P+  E
Sbjct: 302 LTAAHIKSVR-PALGLP---------PADYDRLIGKRVSRDMAANQPLSWE 342


>gi|238762363|ref|ZP_04623334.1| Flagella basal body P-ring formation protein FlgA [Yersinia
           kristensenii ATCC 33638]
 gi|238699348|gb|EEP92094.1| Flagella basal body P-ring formation protein FlgA [Yersinia
           kristensenii ATCC 33638]
          Length = 249

 Score = 36.4 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E  +T  P  ++ V ++K  L  G +V P+ +E           G+I +        E+ 
Sbjct: 109 EVSVTVKPDIYLPVWVAKSTLERGKLVAPDDIELKKKNISTAQGGYITNP------DEIV 162

Query: 95  GVLVRVPILKGDPIRLEKLVDR 116
           G+ V+  I     +   +L   
Sbjct: 163 GLTVKRRIRGLQVVTPSQLEQP 184


>gi|326404068|ref|YP_004284150.1| flagellar basal-body ring component protein [Acidiphilium
           multivorum AIU301]
 gi|325050930|dbj|BAJ81268.1| flagellar basal-body ring component protein [Acidiphilium
           multivorum AIU301]
          Length = 332

 Score = 36.4 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 8/105 (7%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
            A+   V++++  L  G +VT N ++        +  G +          +  G+ V   
Sbjct: 181 AAQAERVIVARRTLEPGEIVTINDVKMSWVARAALPQGTLTQAA------DALGMQVDRR 234

Query: 102 ILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGG 144
           I  G P+    +      N G +  L        +     +   G
Sbjct: 235 IAAGTPLSKRVVAQVMMVNRGATVNLAVEMPGLEVTAEGVALAAG 279


>gi|127512273|ref|YP_001093470.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           loihica PV-4]
 gi|126637568|gb|ABO23211.1| SAF domain protein [Shewanella loihica PV-4]
          Length = 235

 Score = 36.4 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   L  G ++  + +      +  +         Q +    + G  V+  I    
Sbjct: 114 PVVVANQTLGPGDLIESDQIRLDYVEQSQL------RGQQFDDPVAVTGTRVKRRIPANQ 167

Query: 107 PIRLEKL 113
           P+    L
Sbjct: 168 PLFASNL 174


>gi|27381983|ref|NP_773512.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Bradyrhizobium japonicum USDA 110]
 gi|27355153|dbj|BAC52137.1| flgA [Bradyrhizobium japonicum USDA 110]
          Length = 175

 Score = 36.4 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 25/170 (14%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +G++V G+ A++  +++ R+ +    +                +    +  G ++  +++
Sbjct: 22  VGLIVRGLAAVLLVLVSARVAAAEEKRLP--------------VPAVSIRAGELIRDDMI 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
              AF    +      +  Q      L G + R  +L G PI    + D       +++ 
Sbjct: 68  TERAFAPNLLGVAQFIEGRQI-----LVGRMARRALLPGQPIPTNSVEDPWTVARGAMVK 122

Query: 127 -----KGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKPTVTVV 170
                 G    T   ++ S   G + P  + D  V++R + +   TV VV
Sbjct: 123 VVVEDSGLSIVTYGSAMQSGAAGALIPVRNTDTGVIIRGVVQPDGTVKVV 172


>gi|114330357|ref|YP_746579.1| flagellar basal body P-ring biosynthesis protein FlgA [Nitrosomonas
           eutropha C91]
 gi|114307371|gb|ABI58614.1| putative flagella basal body P-ring formation protein [Nitrosomonas
           eutropha C91]
          Length = 231

 Score = 36.4 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
            NV+ +   + +G +V    +         +  G + D  Q      + G +    +  G
Sbjct: 107 ANVIHAAQPINMGKLVDTQDIVSKEVDLVRIPAGAVTDPDQ------VVGKVAVTFLASG 160

Query: 106 DPIRLEKLVDR 116
            PIR  +L   
Sbjct: 161 QPIRTHQLRAP 171


>gi|238799103|ref|ZP_04642559.1| Flagella basal body P-ring formation protein flgA [Yersinia
           mollaretii ATCC 43969]
 gi|238717050|gb|EEQ08910.1| Flagella basal body P-ring formation protein flgA [Yersinia
           mollaretii ATCC 43969]
          Length = 234

 Score = 36.4 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +T   +E      + +  G + +           G +    I  G P+ 
Sbjct: 114 VASRQLAAGAKITAQDVEMKQGRLDTLPPGALLEPQFA------QGSVSLRQINAGQPLT 167

Query: 110 LEKL 113
              L
Sbjct: 168 RNML 171


>gi|111220768|ref|YP_711562.1| hypothetical protein FRAAL1311 [Frankia alni ACN14a]
 gi|111148300|emb|CAJ59972.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a]
          Length = 260

 Score = 36.4 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++KG L  G V+    L  V+   +    G     +    +++L G  +  P+  G+ +
Sbjct: 62  VVAKGSLPAGHVIVAGDLTTVSARLDARTSG---RYYPGGRLRDLTGATLARPVDAGELV 118

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
                   G    S+ L        + + + +     ++P DHVDV +  + S
Sbjct: 119 SGADFA--GRNTQSTRL--------VPVIVKAGRLPALEPGDHVDVYVFSAGS 161


>gi|115352292|ref|YP_774131.1| pirin domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115282280|gb|ABI87797.1| Pirin domain protein [Burkholderia ambifaria AMMD]
          Length = 290

 Score = 36.4 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 21/71 (29%)

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
            +   P + +      D      +   +   VR  I    PI  +    +    ++  +P
Sbjct: 139 RYQEIPADRIPSATSPDGRARVRVIAGEAFGVRAAIETRTPILYQHFTLQPGATVTQPVP 198

Query: 127 KGKRAATMDIS 137
            G R     + 
Sbjct: 199 PGYRVFAYPLD 209


>gi|254562215|ref|YP_003069310.1| flageller protein FlgA [Methylobacterium extorquens DM4]
 gi|254269493|emb|CAX25459.1| Flageller protein FlgA [Methylobacterium extorquens DM4]
          Length = 348

 Score = 36.4 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           LV     Q    +     +   V +    L  G  +    L     P + V +       
Sbjct: 189 LVVLGERQASLRVAGVAVETREVAVLTRSLNRGEAIASADLTVERRPRDGVPN------D 242

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              A   + G + + P+  G  +R   +    
Sbjct: 243 VQGAPTLVVGQVAQRPLSAGAVLRSGDVAPPD 274


>gi|238919255|ref|YP_002932770.1| flagella basal body P-ring formation protein FlgA, [Edwardsiella
           ictaluri 93-146]
 gi|238868824|gb|ACR68535.1| flagella basal body P-ring formation protein FlgA, putative
           [Edwardsiella ictaluri 93-146]
          Length = 223

 Score = 36.4 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   L  G  +T   L       +++  G I D+ +      L G      I  G PI 
Sbjct: 103 VAIHALPRGQNLTAAQLRLTRGRLDSLPPGTILDIAR------LSGATTLRSIGAGQPIA 156

Query: 110 LEKL 113
              L
Sbjct: 157 ATML 160


>gi|218546633|gb|ACK98963.1| flp pilus assembly protein FlpB [Aeromonas salmonicida subsp.
          masoucida]
          Length = 91

 Score = 36.4 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
             +   VL++   +  G  + P  L W   P   
Sbjct: 43 ASDRVAQVLVAAHRVQAGSFIHPEDLVWQTLPAAE 77


>gi|84502380|ref|ZP_01000516.1| flagellar basal-body P-ring formation protein FlgA [Oceanicola
           batsensis HTCC2597]
 gi|84389192|gb|EAQ01989.1| flagellar basal-body P-ring formation protein FlgA [Oceanicola
           batsensis HTCC2597]
          Length = 222

 Score = 36.4 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
            ++V +    +  G  +    L  V  P   +    + D        +L G+ V+  + +
Sbjct: 96  TLDVPVPVARMLPGERIGEEDLGAVKLPLARIGAFTVTDPA------DLVGMQVKRLLTQ 149

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           G P+  + ++         ++ +G R  ++       +  +  P   +D
Sbjct: 150 GRPVMTQSVIKP------LIIDRGDR-ISIRYDD--GLLALSAPGKALD 189


>gi|297566047|ref|YP_003685019.1| ABC-2 type transporter [Meiothermus silvanus DSM 9946]
 gi|296850496|gb|ADH63511.1| ABC-2 type transporter [Meiothermus silvanus DSM 9946]
          Length = 326

 Score = 36.0 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
           + L  I V   FAL  GIIA +L++     ++ +  E+  +    L++   L+   +   
Sbjct: 200 SALAAIAVWLFFALFWGIIA-QLLAQAISPSDALDPESALRQAQTLVAVSRLSPNTLYAE 258

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
            +       +  +  G       P    +L+G ++  P+  G  + L 
Sbjct: 259 AL-------QALLNPGV--RSLGPVLFSQLEGAVLGTPLPLGQSLLLA 297


>gi|218546631|gb|ACK98962.1| flp pilus assembly protein FlpB [Aeromonas salmonicida subsp.
          achromogenes]
          Length = 90

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
             +   VL++   +  G  + P  L W   P   
Sbjct: 43 ASDRVAQVLVAAHRVQAGSFIHPEDLVWQTLPAAE 77


>gi|317124394|ref|YP_004098506.1| N-acetylneuraminate synthase [Intrasporangium calvum DSM 43043]
 gi|315588482|gb|ADU47779.1| N-acetylneuraminate synthase [Intrasporangium calvum DSM 43043]
          Length = 345

 Score = 36.0 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 12/63 (19%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DL  G V+    L  +  PE  +               +L G +V   +  G PI  
Sbjct: 293 AAVDLPAGTVLGGEHLSLLR-PEGGLSPAV-----------DLRGRVVATAVPAGAPITD 340

Query: 111 EKL 113
             L
Sbjct: 341 ADL 343


>gi|238755328|ref|ZP_04616671.1| Flagella basal body P-ring formation protein flgA [Yersinia ruckeri
           ATCC 29473]
 gi|238706464|gb|EEP98838.1| Flagella basal body P-ring formation protein flgA [Yersinia ruckeri
           ATCC 29473]
 gi|253317691|gb|ACT22780.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           ruckeri]
          Length = 219

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   LA G  +T   + +     + +  G + D           G L    I  G P+
Sbjct: 98  LVATRQLAAGEKLTEKEMTYKEGRLDTLPPGALLDARFA------KGTLALRHINAGQPL 151

Query: 109 RLEKL 113
               L
Sbjct: 152 TRTML 156


>gi|117919766|ref|YP_868958.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           sp. ANA-3]
 gi|117612098|gb|ABK47552.1| flagellar basal-body P-ring formation protein FlgA, putative
           [Shewanella sp. ANA-3]
          Length = 235

 Score = 36.0 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   LA G +++P  +E     + ++         Q +   +L GV V+  + K  
Sbjct: 114 PVVVASETLAPGELISPTQVEIRYIDQNSL------RGMQFSDTSQLSGVRVKRRVAKNF 167

Query: 107 PIRLEKL 113
           PI    L
Sbjct: 168 PIFANNL 174


>gi|238782882|ref|ZP_04626911.1| tight adherance operon protein [Yersinia bercovieri ATCC 43970]
 gi|238716305|gb|EEQ08288.1| tight adherance operon protein [Yersinia bercovieri ATCC 43970]
          Length = 279

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVGMVVTPNILEWVAFPEEN 75
            AG++  R    + +    ++     K   ++++    DL+ G ++T +           
Sbjct: 18  AAGVLGNREDGSNTL--TNLVEPKKEKIATIMLAQSTRDLSSGTILTKDDYALKTV---M 72

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           V +         +  + +   L++  IL G  I  E LV   +   
Sbjct: 73  VPESSQLIKSDLSNPENIKSHLLKTNILSGSYITNEMLVSPESSEF 118


>gi|153947896|ref|YP_001401294.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959391|gb|ABS46852.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 232

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   L  G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 112 VAVRRLVAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 165

Query: 110 LEKL 113
              L
Sbjct: 166 RNML 169


>gi|161484755|ref|NP_670755.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis KIM 10]
 gi|161511337|ref|NP_994331.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis biovar Microtus str. 91001]
 gi|161760560|ref|YP_071832.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis IP 32953]
 gi|218927908|ref|YP_002345783.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis CO92]
 gi|270487677|ref|ZP_06204751.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           KIM D27]
 gi|115346519|emb|CAL19395.1| putative flagella basal body P-ring formation protein [Yersinia
           pestis CO92]
 gi|270336181|gb|EFA46958.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           KIM D27]
          Length = 237

 Score = 36.0 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 97  EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 150

Query: 95  GVLVRVPILKGDPIRLEKLVDR 116
           G+ ++  I +   +   +L   
Sbjct: 151 GLTIKRRIRQLQAVIPSQLEQP 172


>gi|325291938|ref|YP_004277802.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Agrobacterium sp. H13-3]
 gi|325059791|gb|ADY63482.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Agrobacterium sp. H13-3]
          Length = 162

 Score = 36.0 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 24/114 (21%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
            T L+ + ++  F+L A       ++P   Q               L+    +  G  +T
Sbjct: 11  RTALVRMCLASAFSLGA-------MAPAFAQAPTA-----------LVPTRTIYPGETIT 52

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           P  ++ V     N+  G+  D+       E++G++ +  +L G  I +  L + 
Sbjct: 53  PEQVKPVEVTNPNISAGYASDIS------EVEGMISKQTLLPGRTIPIAALREP 100


>gi|311105931|ref|YP_003978784.1| flagella basal body P-ring formation protein FlgA [Achromobacter
           xylosoxidans A8]
 gi|310760620|gb|ADP16069.1| flagella basal body P-ring formation protein FlgA [Achromobacter
           xylosoxidans A8]
          Length = 237

 Score = 36.0 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINV----LISKGDLAVGMVVTPNILEWVAFPEENVF 77
           +  R+         +  T      ++V     ++   +A G  +TP+ L         + 
Sbjct: 85  LRSRMTVGVRCNAPKPWTAYVQATVSVPGHYYVAARLIAAGQALTPDDLAPRDGDLIALP 144

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
            G I D       Q + G+     I  G  +R   L
Sbjct: 145 PGAITDP------QAVAGMTAVHRINAGQAVRSSGL 174


>gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 735

 Score = 36.0 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 49  LISKGDLAVGM---VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           +++K ++  G     +T + +E   +    +  GF     +P+  + L   L+  PI  
Sbjct: 57  VVAKKEIKPGQDFFPLTVDYIE-KTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRP 114


>gi|218778845|ref|YP_002430163.1| flagella basal body P-ring formation protein FlgA
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760229|gb|ACL02695.1| Flagella basal body P-ring formation protein FlgA
           [Desulfatibacillum alkenivorans AK-01]
          Length = 324

 Score = 36.0 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             V+++   L    V+T   +         + DG + D       +E+ G+ +R  +  G
Sbjct: 199 APVVVATRKLDRMDVLTAGDVTVEMRNLSRLPDGVVTDP------KEVRGMRLRQDMDAG 252

Query: 106 DPIRLEKLVDR 116
           + +    L   
Sbjct: 253 EHMLSRMLEKP 263


>gi|218703521|ref|YP_002411040.1| lateral flagellar P-ring addition FlgA-like protein [Escherichia
           coli UMN026]
 gi|293403351|ref|ZP_06647442.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298378963|ref|ZP_06988844.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300900365|ref|ZP_07118540.1| flagella basal body P-ring formation protein FlgA [Escherichia coli
           MS 198-1]
 gi|218430618|emb|CAR11484.1| Lateral flagellar P-ring addition protein (FlgA-like) [Escherichia
           coli UMN026]
 gi|291429204|gb|EFF02224.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298280076|gb|EFI21580.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300356121|gb|EFJ71991.1| flagella basal body P-ring formation protein FlgA [Escherichia coli
           MS 198-1]
          Length = 245

 Score = 36.0 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           M          +  +   P   + V+++K  +A    +T N +E   +         + D
Sbjct: 96  MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSAQRRNVLMD 155

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                   +  G   +  +  G PI  E+LV  
Sbjct: 156 P------DDAIGFSSKHALQPGRPITKEELVSP 182


>gi|227487790|ref|ZP_03918106.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227542431|ref|ZP_03972480.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227092292|gb|EEI27604.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227181629|gb|EEI62601.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 192

 Score = 36.0 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 13/109 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+     ++ G  + P+     + P+  + D  + D           G +    + +G 
Sbjct: 38  TVVTLSRTVSAGETLAPSDFSRTSVPQSLIPDNAVTDD------TAAHGNVAVTTLSRGQ 91

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
            +        G      + P G  +  + ++   A   ++K  D V +V
Sbjct: 92  ILTSTSYTGEG------ITPAGLTSVPLRLAD-PATSELLKHGDSVTIV 133


>gi|329767128|ref|ZP_08258656.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Gemella haemolysans
           M341]
 gi|328837853|gb|EGF87478.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Gemella haemolysans
           M341]
          Length = 485

 Score = 36.0 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215
           +D    +DE+V    T T E+   QA+ L  AQ   +
Sbjct: 30  LDRIKATDEKVGSFITVTEEVALKQAEELDRAQEEGR 66


>gi|238793994|ref|ZP_04637612.1| Flagella basal body P-ring formation protein flgA [Yersinia
           intermedia ATCC 29909]
 gi|238726626|gb|EEQ18162.1| Flagella basal body P-ring formation protein flgA [Yersinia
           intermedia ATCC 29909]
          Length = 226

 Score = 36.0 bits (82), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LAVG  +  + ++      + +  G + + H         G +    I  G P+ 
Sbjct: 106 VAGRQLAVGEKIAASDIQMKQGRLDTLPPGALLEPHFA------QGAVSLRRINAGQPLT 159

Query: 110 LEKL 113
              L
Sbjct: 160 RNML 163


>gi|170024651|ref|YP_001721156.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis YPIII]
 gi|169751185|gb|ACA68703.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis YPIII]
          Length = 269

 Score = 36.0 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   L  G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 149 VAVRRLVAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 202

Query: 110 LEKL 113
              L
Sbjct: 203 RNML 206


>gi|123442788|ref|YP_001006765.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122089749|emb|CAL12602.1| flagella basal body P-ring formation protein FlgA [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 200

 Score = 36.0 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +T   +E      + +  G + + +         G +   PI  G P+ 
Sbjct: 80  VAARQLAAGAKMTLQDIEMKQGRLDTLPPGALLEPNFA------QGAVSLRPINAGQPLT 133

Query: 110 LEKL 113
              L
Sbjct: 134 RNML 137


>gi|126176160|ref|YP_001052309.1| SAF domain-containing protein [Shewanella baltica OS155]
 gi|125999365|gb|ABN63440.1| SAF domain [Shewanella baltica OS155]
          Length = 245

 Score = 36.0 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +    A    + ++   L    +VT   L+W   P        I D         + G  
Sbjct: 112 VRAKVALSAYIPVANKTLVRDEIVTSENLQWKMLPLTASDQDIITDDKH------ILGQA 165

Query: 98  VRVPILKGDPIRLEKLVDR 116
           V   I K  PIR   L   
Sbjct: 166 VARKIRKNKPIRASNLNAP 184


>gi|304412512|ref|ZP_07394118.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica OS183]
 gi|307307171|ref|ZP_07586909.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica BA175]
 gi|304349154|gb|EFM13566.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica OS183]
 gi|306910410|gb|EFN40841.1| flagella basal body P-ring formation protein FlgA [Shewanella
           baltica BA175]
          Length = 245

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +    A    + ++   L    +VT   L+W   P        I D         + G  
Sbjct: 112 VRAKVALSAYIPVANKTLVRDEIVTSENLQWKMLPLTASDQDIITDDKH------ILGQA 165

Query: 98  VRVPILKGDPIRLEKLVDR 116
           V   I K  PIR   L   
Sbjct: 166 VARKIRKNKPIRASNLNAP 184


>gi|270284475|ref|ZP_05966188.2| putative hemagglutinin-related protein [Bifidobacterium gallicum
           DSM 20093]
 gi|270276969|gb|EFA22823.1| putative hemagglutinin-related protein [Bifidobacterium gallicum
           DSM 20093]
          Length = 257

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 28/72 (38%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V++++  +  G V+    +++  FP  +            + +Q +   + +  I  
Sbjct: 28  TRQVVVARHTIERGSVIGATDVQYQQFPATDSAGSTTPWADAADDLQLVSNHIAQFTITA 87

Query: 105 GDPIRLEKLVDR 116
           G  + L+ +  +
Sbjct: 88  GSVVFLDMVAQQ 99


>gi|23008124|ref|ZP_00049700.1| COG1261: Flagellar basal body P-ring biosynthesis protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 158

 Score = 35.6 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           +    +  G  +   +L   A+P       +       +A   + G   R  +L G+P+ 
Sbjct: 35  VPTVTIYPGDTIKETMLRMQAYPAT-----YRARTAVIDASAAIAGRTARRMLLPGEPVP 89

Query: 110 LEKLVDR 116
           +  + D 
Sbjct: 90  VNAVDDP 96


>gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
 gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
           bacterium 1_1_47]
          Length = 724

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 49  LISKGDLAVGM---VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
           +++K ++  G     +T + +E   +    +  GF     +P+  + L   L+  PI  
Sbjct: 46  VVAKKEIKPGQDFFPLTVDYIE-KTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRP 103


>gi|294101406|ref|YP_003553264.1| efflux transporter, RND family, MFP subunit [Aminobacterium
           colombiense DSM 12261]
 gi|293616386|gb|ADE56540.1| efflux transporter, RND family, MFP subunit [Aminobacterium
           colombiense DSM 12261]
          Length = 426

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 20/116 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+  RL G+      A++  +    L+S    + +E + E  A+ +  +           
Sbjct: 1   MRFKRLWGVA-----AILIVVGGFFLLSNRKEEQKEKVVEKIARPVKYI----------T 45

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           ++   +         VF G +      +    + G L+ +P+ KG+PI    LV +
Sbjct: 46  LSAPDVVLRR-----VFPGKVLASKTADLSFRVSGPLIELPVKKGEPINKGDLVAQ 96


>gi|239995132|ref|ZP_04715656.1| flagellar basal body P-ring biosynthesis protein FlgA [Alteromonas
           macleodii ATCC 27126]
          Length = 238

 Score = 35.6 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   +++++G ++ G V+T + L         +      +      ++ L G  ++ 
Sbjct: 111 QVTRTKEIVVTQGAISPGTVLTSSNLSLAKVDVRRLRHTAFTE------LEALIGARIKR 164

Query: 101 PILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGG 144
            +  G  I+   L  V +G+    +    G    T  I+    V G
Sbjct: 165 RVTDGQAIQSNMLCFVCKGDRITITAEVAGMEVKTAGIAQQDGVVG 210


>gi|304438316|ref|ZP_07398257.1| flagella basal body P-ring formation protein FlgA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304368682|gb|EFM22366.1| flagella basal body P-ring formation protein FlgA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 254

 Score = 35.6 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 8/101 (7%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           VL++  D+ +   +TP          + + +  + D         L G +    I KG  
Sbjct: 131 VLVAMTDIRMDEAITPANAHVEESAVDTLPETTVTD------FDRLAGRVAGRYIRKGTV 184

Query: 108 IRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMI 146
           I    L        G    L       T+     +   G I
Sbjct: 185 ITPTLLAMPRVLTAGSPVTLVAENGGITIRAEGVALEAGRI 225


>gi|78188940|ref|YP_379278.1| secretion protein HlyD [Chlorobium chlorochromatii CaD3]
 gi|78171139|gb|ABB28235.1| Secretion protein HlyD [Chlorobium chlorochromatii CaD3]
          Length = 353

 Score = 35.6 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R   ++++GV A V G   +            V  E P     V ++   ++    
Sbjct: 1   MK-RRTFIVIIAGVLASVVGGYLVLHQEKQEAPKIAVQAERPIPVSIVAVAAATVS---- 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
              + L  V         G I  + + + + E++G + R+ +  G+
Sbjct: 56  ---DTLNLV---------GEIQAIREADIVAEVEGQVRRIAVEPGE 89


>gi|313835437|gb|EFS73151.1| SAF domain protein [Propionibacterium acnes HL037PA2]
 gi|314928544|gb|EFS92375.1| SAF domain protein [Propionibacterium acnes HL044PA1]
 gi|314970476|gb|EFT14574.1| SAF domain protein [Propionibacterium acnes HL037PA3]
          Length = 191

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 14/129 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
              +    V+++   +  G V+  + L  +      +        H+  A+ +++G    
Sbjct: 27  ATSSSGREVVVAARAIEGGRVIQRSDLRTIRIDPGILP-------HEAAALAQVEGRQAS 79

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           V I +G  +    ++     G       GK    + ++ SS V GM++    V VV    
Sbjct: 80  VRITEGTILTTSAVLSGSATG------SGKALVGIHLADSSMV-GMLQVGQQVSVVSPSE 132

Query: 160 LSERKPTVT 168
                    
Sbjct: 133 DGTPHVLTR 141


>gi|50365262|ref|YP_053687.1| membrane-associated lipoprotein [Mesoplasma florum L1]
 gi|50363818|gb|AAT75803.1| membrane-associated lipoprotein [Mesoplasma florum L1]
          Length = 1476

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 12/90 (13%)

Query: 111  EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170
              ++   +  +S+       A  + I       G++   D+VD  + R+  E   +V + 
Sbjct: 1282 ADIIKADDLKISAAKGNDASAVKIQIETVLTAAGLVNGTDYVDFTVARTDDEATTSVEI- 1340

Query: 171  LSNIRVIAIDHNIDSDERVLVGSTATLELT 200
                            ++V+ GS  T  +T
Sbjct: 1341 -----------TGKGSDKVVDGSKVTFVVT 1359



 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 12/90 (13%)

Query: 111  EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170
              ++   +  +S+       A  + I       G++   D+VD  + R+  E   +V + 
Sbjct: 934  ADIIKADDLKISAAKGNDVSAVKIQIETVLTAAGLVNGTDYVDFTVARTDDEATTSVEI- 992

Query: 171  LSNIRVIAIDHNIDSDERVLVGSTATLELT 200
                            ++V+ GS  T  +T
Sbjct: 993  -----------TGKGSDKVVDGSKVTFVVT 1011


>gi|323975934|gb|EGB71028.1| flagella basal body P-ring formation protein FlgA [Escherichia coli
           TW10509]
          Length = 252

 Score = 35.6 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           M          +  +   P   + V+++K  +A    +T N +E   +            
Sbjct: 103 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QR 156

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                 + E  G+  +  +  G P+  E+LV  
Sbjct: 157 RDVLMDLNEAIGLSSKHALQPGRPLTKEELVSP 189


>gi|150395486|ref|YP_001325953.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Sinorhizobium medicae WSM419]
 gi|150027001|gb|ABR59118.1| SAF domain protein [Sinorhizobium medicae WSM419]
          Length = 169

 Score = 35.6 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           A ++A   V+   +     + E P      +I K  +  G  +  ++LE V     ++ D
Sbjct: 22  AVLLAA--VASCMLPPASALAEKPTA----VIPKQTIYPGETLDASMLEVVDVTNPDLRD 75

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           G++       ++ E+DG++ +  +L G  I    L ++
Sbjct: 76  GYVR------SLDEVDGMVTKRTLLPGRVILASALREQ 107


>gi|327478805|gb|AEA82115.1| SAF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 267

 Score = 35.6 bits (81), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +T  P+ ++  + ++G +  G  +  + L            G+         ++E+ G+ 
Sbjct: 134 VTSQPSVWLPAVHAQGIIERGQTLGRDDLRLEPINIGKAQRGYFHR------LEEVQGMA 187

Query: 98  VRVPILKGDPIRLEKLVDR 116
            +  I  G  +    L   
Sbjct: 188 AKRRIRAGQTLTPSLLAQP 206


>gi|219682833|ref|YP_002469216.1| cation transport ATPase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620483|gb|ACL28640.1| cation transport ATPase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 192

 Score = 35.6 bits (81), Expect = 6.9,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 42/217 (19%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
           R M + +S   AL   +  + L +                    +++  DL  G+V+   
Sbjct: 6   RHMLLALSVGVALFCTLQCVALATATRQA---------------VVAARDLDAGLVIATG 50

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            +E V  P+ +     +          +  G++ +  I KGD +    + +         
Sbjct: 51  DVEMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDVGELPQ------ 98

Query: 125 LPKGKRAATMDISISSAVGGMIKP-NDHVDVVMVR---SLSERKPTVTVVLSNIRVIAID 180
           +P+      + +     +G    P    V++   +     +   P   VV S+  V+A  
Sbjct: 99  VPEHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASPEGCVVSSHAVVMA-- 152

Query: 181 HNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKL 216
                D+    GST T + ++ ++A  ++AAQ    L
Sbjct: 153 -QPRLDD---TGSTVTQMAMSAVEALQVLAAQEHGTL 185


>gi|262276423|ref|ZP_06054232.1| flagellar basal-body P-ring formation protein FlgA [Grimontia
           hollisae CIP 101886]
 gi|262220231|gb|EEY71547.1| flagellar basal-body P-ring formation protein FlgA [Grimontia
           hollisae CIP 101886]
          Length = 232

 Score = 35.6 bits (81), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 6/69 (8%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V+++K  L  G+ +    L         + D              L G  V+  +  
Sbjct: 109 LTPVVVAKRPLDRGVTIAKEDLIIQ------LVDARFQRGQTYTDNATLLGSRVKRVVGI 162

Query: 105 GDPIRLEKL 113
           G+PI    +
Sbjct: 163 GEPISGNDI 171


>gi|282899569|ref|ZP_06307533.1| Copper-translocating P-type ATPase [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195448|gb|EFA70381.1| Copper-translocating P-type ATPase [Cylindrospermopsis raciborskii
           CS-505]
          Length = 805

 Score = 35.6 bits (81), Expect = 7.1,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHV--DVVMVRSLSERKPTVTVVLSNIRVIA---ID 180
            +GK    + +     + G+I  +D +  D  +  +  +R     +VLS  R+ A   I 
Sbjct: 584 KEGKTVIGVAVDDI--LAGLIAVSDTIRPDAKLTVNHLQRMGLHVIVLSGDRLEAAVVIA 641

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
             +  D   ++       +TP Q   L+ +     L     ++ D +   +   D  +  
Sbjct: 642 QQLGLDSTNVIAG-----VTPEQKAGLIRSLQQGSL-----NVGDNSCVVAMVGDGINDA 691

Query: 241 EEGKEIQI 248
               +  +
Sbjct: 692 PALSQADV 699


>gi|332982946|ref|YP_004464387.1| hypothetical protein Mahau_2401 [Mahella australiensis 50-1 BON]
 gi|332700624|gb|AEE97565.1| hypothetical protein Mahau_2401 [Mahella australiensis 50-1 BON]
          Length = 332

 Score = 35.6 bits (81), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V++   ++   M +T +++   A P   V    + D +       + G +  V  + 
Sbjct: 29  TKQVVVVTKEINDTMEITSDMITVKALPVSAVPGDVLTDPN------AVIGKMTTVGRIP 82

Query: 105 GDPIRLEKLVDRGN 118
           GD I    L    +
Sbjct: 83  GDLIPKSILAKPED 96


>gi|153005765|ref|YP_001380090.1| type IV pilus assembly PilZ [Anaeromyxobacter sp. Fw109-5]
 gi|152029338|gb|ABS27106.1| type IV pilus assembly PilZ [Anaeromyxobacter sp. Fw109-5]
          Length = 519

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
           +G    VH   A   + G +    +  GDPI  +  V    G L++ +    R + + + 
Sbjct: 27  EGATARVHPLAARDPVHGAISPADVRPGDPISAQVRVAGRAGELAAQV---WRLSPLGVE 83

Query: 138 ISSAVG-GMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
           +  +   G + P D +DV +      R    T   + +RV A+
Sbjct: 84  LVRSPALGTVAPGDELDVTL------RVGASTTTFAALRVAAL 120


>gi|222053733|ref|YP_002536095.1| flagella basal body P-ring formation protein FlgA [Geobacter sp.
           FRC-32]
 gi|221563022|gb|ACM18994.1| flagella basal body P-ring formation protein FlgA [Geobacter sp.
           FRC-32]
          Length = 226

 Score = 35.6 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +A+ +     V+    +         ++++   L  G V+    +         +   F+
Sbjct: 77  LALIVRVDGRVERNVPVKVEVEAMAEMVVAVRPLERGEVIDAADVAVQKRGLSRLQGRFV 136

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
            DV       E+ G  VR  I   +PIR +
Sbjct: 137 RDV------DEVVGKRVRTAIRGNNPIRPD 160


>gi|312172056|emb|CBX80313.1| Flagella basal body P-ring formation protein flgA precursor
           [Erwinia amylovora ATCC BAA-2158]
          Length = 222

 Score = 35.6 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   L+ G  ++ + +       + +    + +        +  G +V   I+ G P+
Sbjct: 101 LVANRQLSQGEAISASDVRIEHGRLDALPARTLLNS------DDATGAIVLRAIMPGQPV 154

Query: 109 R 109
            
Sbjct: 155 T 155


>gi|310642358|ref|YP_003947116.1| saf domain protein [Paenibacillus polymyxa SC2]
 gi|309247308|gb|ADO56875.1| SAF domain protein [Paenibacillus polymyxa SC2]
          Length = 325

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 27/119 (22%)

Query: 17  LVAGIIAMRLVS--------------PHHVQTEEV-----ITENPAKFINVLISKGDLAV 57
           + AGI+ M  VS                 V+ E+        +  AK    ++   D++ 
Sbjct: 17  IGAGIVGMIFVSYLILNTHQMSEIRKQAEVEAEQKWKLYEQEQRTAKTGWAVV--RDISP 74

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           G  +T N L+ +  P        + + +      E+ G   ++ + KG  +    +   
Sbjct: 75  GEQITSNDLKGIKVPGSQAPSNLLANKN------EVSGTTAKIELKKGSVLTSAMITAN 127


>gi|188579868|ref|YP_001923313.1| FlgA, flagellar basal-body P-ring formation protein
           [Methylobacterium populi BJ001]
 gi|179343366|gb|ACB78778.1| FlgA, flagellar basal-body P-ring formation protein
           [Methylobacterium populi BJ001]
          Length = 162

 Score = 35.6 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           +    +  G  +  ++L   A+P       +       +A   + G   R  +L G+P+ 
Sbjct: 39  VPTVTIYPGDTIKDSMLRMQAYPAT-----YRARTAVIDASAAIAGRTARRMLLPGEPVP 93

Query: 110 LEKLVDR 116
           +  + D 
Sbjct: 94  VNAVDDP 100


>gi|218546637|gb|ACK98964.1| flp pilus assembly protein FlpB [Aeromonas salmonicida subsp.
          smithia]
          Length = 86

 Score = 35.6 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
             +   VL++   +  G  + P  L W   P   
Sbjct: 43 ASDRVAQVLVAAHRVQAGSFIHPEDLVWQTLPAAE 77


>gi|241889700|ref|ZP_04776998.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Gemella haemolysans
           ATCC 10379]
 gi|241863322|gb|EER67706.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Gemella haemolysans
           ATCC 10379]
          Length = 485

 Score = 35.3 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           +D    +D++V    T T E+   QA+AL  AQ   ++
Sbjct: 30  LDRIKATDDKVGSFITVTEEVALKQAEALDCAQEEGRV 67


>gi|170747257|ref|YP_001753517.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653779|gb|ACB22834.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           radiotolerans JCM 2831]
          Length = 379

 Score = 35.3 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           LVS    Q    ++    +   V +   +L  G  V    +     P ++V         
Sbjct: 215 LVSLGERQASLRVSGVVMELREVAVLTRNLNRGEPVKEGDVALEQRPRDSVAPDA----- 269

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
              ++  + G + +  ++ G  +R+      
Sbjct: 270 -QGSVTTILGEVAQNTLMAGTVLRVTDTAPP 299


>gi|300936121|ref|ZP_07151060.1| flagella basal body P-ring formation protein FlgA [Escherichia coli
           MS 21-1]
 gi|300458699|gb|EFK22192.1| flagella basal body P-ring formation protein FlgA [Escherichia coli
           MS 21-1]
          Length = 252

 Score = 35.3 bits (80), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           M          +  +   P   + V+++K  +A    +T N +E   +   NV     + 
Sbjct: 103 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPY---NVSAQHREV 159

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           + +PN   +  G   +  +  G PI  E+L+  
Sbjct: 160 LMEPN---DAIGFSSKHALQPGRPITKEELISP 189


>gi|332527905|ref|ZP_08403941.1| flagella basal body P-ring formation protein FlgA [Rubrivivax
           benzoatilyticus JA2]
 gi|332112481|gb|EGJ12274.1| flagella basal body P-ring formation protein FlgA [Rubrivivax
           benzoatilyticus JA2]
          Length = 185

 Score = 35.3 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 30/128 (23%)

Query: 49  LISKGDLAVGMVVTPNILEW--VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +++   LA G V+ P  L    V +                 ++Q L+G  +  P+  G 
Sbjct: 64  VVAVTALAPGTVLAPGQLALGEVDWAAAATPPLA--------SVQALEGRTLARPLAPGQ 115

Query: 107 PIRLEKLVDR---GNGGLSSLLPKG------------KRAAT---MDISISSA--VGGMI 146
            +RL+ L  R     G + S++ +G             R      + +   +   V G  
Sbjct: 116 ALRLDALKPREWFAAGEVVSVVARGDGYAVSTRGEALMRGVEGRLVRVRTEAGRIVTGWP 175

Query: 147 KPNDHVDV 154
                VDV
Sbjct: 176 TAEGRVDV 183


>gi|303247592|ref|ZP_07333863.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
 gi|302491072|gb|EFL50966.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
          Length = 555

 Score = 35.3 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           V+A    + + +                   L  A    +L  VLRS+ D  P+++++
Sbjct: 509 VLAAATAVKTGQEKRFAR------------RLALADPSGRLRAVLRSVTDAAPAAAQE 554


>gi|284989454|ref|YP_003408008.1| Flp pilus assembly protein CpaB [Geodermatophilus obscurus DSM
           43160]
 gi|284062699|gb|ADB73637.1| Flp pilus assembly protein CpaB [Geodermatophilus obscurus DSM
           43160]
          Length = 215

 Score = 35.3 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 31/131 (23%)

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI--------- 108
           G V+T   L   A+P      G + D        ++ G  +   +  G+P+         
Sbjct: 56  GAVLTAEDLAVAAYPPALRPTGTVADPA------DVVGRALTGGVRSGEPLTDAGLAGAA 109

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
             ++L     G +++ +               AV  +++P D VDV+     + +     
Sbjct: 110 LTDQLAA---GQVAAPVRP----------ADLAVSALVQPGDRVDVLATAPGAAQ---AE 153

Query: 169 VVLSNIRVIAI 179
           VV +   V+A 
Sbjct: 154 VVAAGAPVLAT 164


>gi|291085566|ref|ZP_06353375.2| flagella basal body P-ring formation protein FlgA [Citrobacter
           youngae ATCC 29220]
 gi|291071317|gb|EFE09426.1| flagella basal body P-ring formation protein FlgA [Citrobacter
           youngae ATCC 29220]
          Length = 267

 Score = 35.3 bits (80), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 12/87 (13%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++   +A G  +TP  +       + +    + D++Q      +   +    ++ G PI
Sbjct: 146 VVAAAPVARGSALTPASVTLKRGRLDQLPPRAVLDLNQ------VQDAVSLRDLVPGQPI 199

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMD 135
           +L  L        +  +  G+R   + 
Sbjct: 200 QLSMLRQ------AWRIKAGQRVLVIA 220


>gi|241895049|ref|ZP_04782345.1| integral membrane protein (PIN domain superfamily) [Weissella
           paramesenteroides ATCC 33313]
 gi|241871767|gb|EER75518.1| integral membrane protein (PIN domain superfamily) [Weissella
           paramesenteroides ATCC 33313]
          Length = 369

 Score = 35.3 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 10/71 (14%)

Query: 134 MDISISSAVGGMIKP----NDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
           + +   + + G ++P     DH+ V++V++ +ER+  V  +     V+A       + R 
Sbjct: 287 VQVLNINELAGALRPRVAVGDHLSVLLVKNGTERQQAVGYLDDGTMVVA------EEGRK 340

Query: 190 LVGSTATLELT 200
            +  T T+E+T
Sbjct: 341 YLQKTVTVEVT 351


>gi|288940403|ref|YP_003442643.1| flagella basal body P-ring formation protein FlgA [Allochromatium
           vinosum DSM 180]
 gi|288895775|gb|ADC61611.1| flagella basal body P-ring formation protein FlgA [Allochromatium
           vinosum DSM 180]
          Length = 245

 Score = 35.3 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 8/79 (10%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +     + + V++ +  ++   V+ P+ +         + +G+  +        ++ G+ 
Sbjct: 112 VPARIERHLPVVVLERPISRQQVIGPDDIRIERQAVSTLTNGYFTEAS------DVVGLA 165

Query: 98  VRVPILKGDPIRLEKLVDR 116
            R  ++ G  +    +  R
Sbjct: 166 SRRRLMPGQVLTSAHVTQR 184


>gi|304310781|ref|YP_003810379.1| Flageller protein FlgA [gamma proteobacterium HdN1]
 gi|301796514|emb|CBL44722.1| Flageller protein FlgA [gamma proteobacterium HdN1]
          Length = 227

 Score = 35.3 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 50/139 (35%), Gaps = 13/139 (9%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
           ++      + N +I+K  ++ G ++    +E           GF   +       +  G+
Sbjct: 93  MMAATLRTYQNAVIAKIPISRGQIIDTQAVELRETEITPSASGFYTRIS------DTKGL 146

Query: 97  LVRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           L +  I     +    L +      G + ++  G    ++  +  +   G I      ++
Sbjct: 147 LAKRSIAANQVLTHTMLKNPDVIQRGQAVIIEAGNTQFSIRTAGVALASGAIG-----EI 201

Query: 155 VMVRSLSERKPTVTVVLSN 173
           V V++ +  +     ++S+
Sbjct: 202 VRVKNSTSGRTVEGTIISD 220


>gi|126665162|ref|ZP_01736145.1| Modification methylase HemK [Marinobacter sp. ELB17]
 gi|126630532|gb|EBA01147.1| Modification methylase HemK [Marinobacter sp. ELB17]
          Length = 314

 Score = 35.3 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL---RSIADLNPSSSEDSDVWDVQE 241
            D   +V    TL+L P QA+ L        ++L L   R   D+  S   D+ V   Q 
Sbjct: 108 PDTECVVEQALTLDL-PAQARVLDLGTGTGAIALALASERPDWDITASDFVDAAVALAQS 166

Query: 242 EGKE----IQIIKA 251
                   IQ++K+
Sbjct: 167 NAAALNLPIQVVKS 180


>gi|218531219|ref|YP_002422035.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           chloromethanicum CM4]
 gi|218523522|gb|ACK84107.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           chloromethanicum CM4]
          Length = 348

 Score = 35.3 bits (80), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           LV     Q    +     +   V +    L  G  V    L     P + V +       
Sbjct: 189 LVVLGERQASLRVAGVAVETREVAVLTRSLNRGEAVASADLTVERRPRDGVPN------D 242

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              A   + G + + P+  G  +R   +    
Sbjct: 243 VQGAPTLVVGQVAQRPLSAGAVLRSGDVAPPD 274


>gi|323191534|gb|EFZ76795.1| lateral flagellar P-ring addition protein [Escherichia coli
           RN587/1]
          Length = 245

 Score = 35.3 bits (80), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           M          +  +   P   + V+++K  +A    +T N +E   +            
Sbjct: 96  MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTENDVELKPYNVSA------QR 149

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                   +  G   +  +  G PI  E+L+  
Sbjct: 150 REVLMEPNDAIGFSSKHALQPGRPITKEELISP 182


>gi|292487935|ref|YP_003530810.1| flagella basal body P-ring formation protein FlgA [Erwinia
           amylovora CFBP1430]
 gi|292899154|ref|YP_003538523.1| flagella basal body P-ring formation protein [Erwinia amylovora
           ATCC 49946]
 gi|291199002|emb|CBJ46113.1| flagella basal body P-ring formation protein [Erwinia amylovora
           ATCC 49946]
 gi|291553357|emb|CBA20402.1| Flagella basal body P-ring formation protein flgA precursor
           [Erwinia amylovora CFBP1430]
          Length = 222

 Score = 35.3 bits (80), Expect = 9.2,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   L+ G  ++ + +       + +    + +        +  G +V   I+ G P+
Sbjct: 101 LVANRQLSQGEAISASDVRIEHGRLDALPARTLLNS------DDATGAIVLRAIMPGQPV 154

Query: 109 R 109
            
Sbjct: 155 T 155


>gi|269138578|ref|YP_003295278.1| flagellar basal body P-ring biosynthesis protein [Edwardsiella
           tarda EIB202]
 gi|267984238|gb|ACY84067.1| flagellar basal body P-ring biosynthesis protein [Edwardsiella
           tarda EIB202]
          Length = 249

 Score = 35.3 bits (80), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   L+ G  +TP  L       +++  G I D+ +      L G  +   I  G PI 
Sbjct: 129 VAIHALSRGQNLTPAQLRLTRGRLDSLPPGTILDIAR------LSGATMLRSIGAGQPIA 182

Query: 110 LEKL 113
              L
Sbjct: 183 ATML 186


>gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring formation protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074133|gb|ADJ63532.1| flagellar basal body P-ring formation protein [Herbaspirillum
           seropedicae SmR1]
          Length = 254

 Score = 35.3 bits (80), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 17/96 (17%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP- 107
           LI+   LA G  ++ + +  V      +  G I +  Q      + G +  + +  G P 
Sbjct: 133 LIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQ------VIGRVAGMSLRAGTPL 186

Query: 108 ----IRLEKLVDRG------NGGLSSLLPKGKRAAT 133
               IR +++V +G      + G    +    RA +
Sbjct: 187 RMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALS 222


>gi|38233457|ref|NP_939224.1| hypothetical protein DIP0860 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199717|emb|CAE49377.1| Putative membrane protein [Corynebacterium diphtheriae]
          Length = 227

 Score = 35.3 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 61/206 (29%), Gaps = 27/206 (13%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            AL   I+A+ L           +         VL     +  G  V          P+ 
Sbjct: 23  LALSLVILALAL----------AVFPRTESTTEVLRYATAVEAGTAVNRTHFTTAHVPQH 72

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL---LPKG--- 128
            + +  +       +       +       G        +D  +  LSS+   LP G   
Sbjct: 73  LIPENALRPDDLLASAPNE--RITISAHTAGSIATAVDFLDS-SHTLSSVGNQLPFGEDQ 129

Query: 129 -KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187
                 + +    +V  +++P D VDV+      +           + V A    +    
Sbjct: 130 PINIVPIRL-AEQSVSRVVQPGDVVDVIAANDAHDPHVVAA---GGVIVFA---PVPEKN 182

Query: 188 RVLVGSTATLELTPMQAKALVAAQSV 213
               GS A L   P     +VA+QS+
Sbjct: 183 TSSYGSDAVLIALPADQARIVASQSL 208


>gi|297183132|gb|ADI19275.1| flagellar basal body p-ring biosynthesis protein [uncultured delta
           proteobacterium HF0200_39L23]
          Length = 227

 Score = 35.3 bits (80), Expect = 10.0,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           +VLI+K  +    ++    +  V    + +   ++ D       +++ G +    I   +
Sbjct: 104 DVLIAKDTIKEDHIIREADILKVRRNVDRMPSAYVTDE------EDILGKIASRAINPNE 157

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKR 130
            I+   +          ++  G R
Sbjct: 158 VIQETNVSAVP------VIKSGDR 175


>gi|240139800|ref|YP_002964277.1| Flageller protein FlgA [Methylobacterium extorquens AM1]
 gi|240009774|gb|ACS41000.1| Flageller protein FlgA [Methylobacterium extorquens AM1]
          Length = 348

 Score = 35.3 bits (80), Expect = 10.0,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           LV     Q    +     +   V +    L  G  V    L     P + V +       
Sbjct: 189 LVVLGERQASLRVAGVAVETREVAVLTRSLNRGEAVAGADLTVERRPRDGVPN------D 242

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              A   + G + + P+  G  +R   +    
Sbjct: 243 VQGAPTLVVGQVAQRPLSAGAVLRSGDVAPPD 274


>gi|119775456|ref|YP_928196.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           amazonensis SB2B]
 gi|119767956|gb|ABM00527.1| flagellar basal-body P-ring formation protein FlgA, putative
           [Shewanella amazonensis SB2B]
          Length = 235

 Score = 35.3 bits (80), Expect = 10.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++K  L  G ++    +E          D  +    Q + +Q L G  V+  I +  
Sbjct: 114 PVVVAKRPLGNGDLLDAESIEVRYV------DKTLLRGQQFSHLQPLYGSRVKRRIPQDA 167

Query: 107 PIRLEKL 113
           PI  + L
Sbjct: 168 PIFADNL 174


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.309    0.151    0.410 

Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,838,811,972
Number of Sequences: 14124377
Number of extensions: 210241249
Number of successful extensions: 723786
Number of sequences better than 10.0: 1845
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 1323
Number of HSP's that attempted gapping in prelim test: 719007
Number of HSP's gapped (non-prelim): 2781
length of query: 263
length of database: 4,842,793,630
effective HSP length: 136
effective length of query: 127
effective length of database: 2,921,878,358
effective search space: 371078551466
effective search space used: 371078551466
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 80 (35.3 bits)