RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
(263 letters)
>gnl|CDD|163174 TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of
this protein family are the CpaB protein of Flp-type
pilus assembly. Similar proteins include the FlgA
protein of bacterial flagellum biosynthesis.
Length = 261
Score = 156 bits (397), Expect = 4e-39
Identities = 81/224 (36%), Positives = 116/224 (51%), Gaps = 16/224 (7%)
Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
+ ++ V +A ++A R +SP E + V+++ DL G +T L W
Sbjct: 2 LAIALVAGGLAALLARRWLSPQQPAAAVA--EKVPT-VPVVVAARDLPAGTPITAEDLRW 58
Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPK 127
V +PE +V G DD+ Q L G +VR P+ G+PI KL G +GGL++L+P
Sbjct: 59 VLWPEASVPAGAFDDIAQ------LVGRIVRRPLEAGEPILEAKLAPPGASGGLAALIPP 112
Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNI 183
G RA + + + VGG I P D VDV++ R E + T VL NIRV+A+D
Sbjct: 113 GMRAVAIRVDEVTGVGGFILPGDRVDVLLTRRDDESRPNDRATSETVLQNIRVLAVDQTT 172
Query: 184 --DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
D + V T TLE+TP QA+ L A+ V LSL LR+ AD
Sbjct: 173 QEGEDTKPKVVRTVTLEVTPEQAEKLALARQVGTLSLALRNAAD 216
>gnl|CDD|129091 smart00858, SAF, This domain family includes a range of different
proteins. Such as antifreeze proteins and flagellar FlgA
proteins, and CpaB pilus proteins.
Length = 64
Score = 30.2 bits (69), Expect = 0.56
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENV--FDGFIDDVHQPNAMQELDGVLVRVPILK 104
V+++ DL G V+T + ++ G ++ G + R I
Sbjct: 2 RVVVAARDLPAGEVITAEDVRLGHVALRDLPGGGGLTP-------YGQVIGKVARRDIAA 54
Query: 105 GDPIRLEKLV 114
G+PI L
Sbjct: 55 GEPITASDLE 64
>gnl|CDD|163171 TIGR03170, flgA_cterm, flagella basal body P-ring formation protein
FlgA. This model describes a conserved C-terminal
region of the flagellar basal body P-ring formation
protein FlgA. This sequence region contains a SAF
domain, now described by Pfam model pfam08666.
Length = 122
Score = 29.4 bits (67), Expect = 0.96
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
V+++K L G V++P L+ + G + D E+ G + + P+ G P
Sbjct: 1 VVVAKRPLKRGEVISPEDLKLERGDLARLPGGVLTDP------DEVVGKVAKRPLRAGQP 54
Query: 108 IRL-----EKLVDRGN 118
+ LV RG+
Sbjct: 55 LTANMLRPPWLVKRGD 70
>gnl|CDD|149652 pfam08666, SAF, SAF domain. This domain family includes a range of
different proteins. Such as antifreeze proteins and
flagellar FlgA proteins, and CpaB pilus proteins.
Length = 63
Score = 28.7 bits (65), Expect = 1.7
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
NV+++ DL G V+T + L V P + +A E+ G + + I G+
Sbjct: 2 NVVVAARDLPAGEVLTADDLTLVRPPLDLPAGLA------ADAYGEVIGKVAKRDIAAGE 55
Query: 107 PIRLEKLV 114
P+ L
Sbjct: 56 PLTPSDLE 63
>gnl|CDD|185606 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 27.2 bits (60), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 222 SIADLNP-------SSSEDS--DVWDVQEEGKEIQII 249
SI D NP SS DS ++WD++ E + QI
Sbjct: 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN 165
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 27.2 bits (60), Expect = 5.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG-------DPIRLEKLVD 115
V PE I VH+ NA ++ G+LV++P+ K + I LEK VD
Sbjct: 74 VDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVD 127
>gnl|CDD|184557 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 26.6 bits (59), Expect = 6.1
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 18/76 (23%)
Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG-DPIRL------EKLVD-------- 115
P + + Q N + +DG+L+++P+ K D + L +K D
Sbjct: 69 LPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLG 128
Query: 116 ---RGNGGLSSLLPKG 128
+G GL S P G
Sbjct: 129 RLVKGEPGLRSCTPAG 144
>gnl|CDD|130645 TIGR01583, formate-DH-gamm, formate dehydrogenase, gamma subunit.
NiFe-hydrogenase and thiosulfate reductase contain
homologous gamma subunits, and these can be found
scoring in the noise of this model.
Length = 204
Score = 26.3 bits (58), Expect = 9.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVI 38
+V+ G ++ GI L P + E++
Sbjct: 115 LVLGGFLMIITGIFMWFLDFPSTAFSIELL 144
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720.
Length = 456
Score = 26.2 bits (57), Expect = 9.3
Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 24/164 (14%)
Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS--ISSAVGGMIKPNDHVDVVMVRSLSER 163
+PI +++ NGG S K ++++ +++S + S G K VD SER
Sbjct: 293 NPIIIDQFY---NGGDSDN-AKDRKSSAVEVSKVVFSNFIGTSKSEYGVDF----RCSER 344
Query: 164 KPTVTVVLSNIRVIAIDH-----------NIDSDERVLVGSTATLELTPMQAKALVAAQS 212
P + L ++++ N+ + V LEL+ +AQ
Sbjct: 345 VPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELST---DMFSSAQL 401
Query: 213 VAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
+ + + +S+ + +W Q GK++++ ++V+
Sbjct: 402 LEQTCMSAQSVQPRTTTQPMQDPIWVFQSRGKQLRVYNIAILVS 445
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.135 0.370
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,270,759
Number of extensions: 279209
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 15
Length of query: 263
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,006,537
Effective search space: 685117827
Effective search space used: 685117827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)