RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
(263 letters)
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} (A:)
Length = 204
Score = 30.5 bits (67), Expect = 0.22
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
V E IT + L + G L +G + ++ + F G I DV
Sbjct: 126 QVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVI 180
>1a4i_A Methylenetetrahydrofolate dehydrogenase /
methenyltetrahydrofolate cyclohydrolase...; THF,
bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo
sapiens} (A:9-123,A:273-301)
Length = 144
Score = 27.1 bits (60), Expect = 2.5
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
+ P + + N + G LV++P+ + I E++++
Sbjct: 60 THIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINA 109
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A (A:1-79,A:358-473)
Length = 195
Score = 27.2 bits (60), Expect = 2.6
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 25 RLVSPHHVQTEEVI---TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
+ V + + + + N AK N+ KG +AVG I + + +
Sbjct: 101 KAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNS 160
Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPI 108
+ E G + V I +G +
Sbjct: 161 SLEYNIFEGMECRGSPLVV-ISQGKIV 186
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil
fold, immunoglobulin fold, hormone/growth
factor/transferase complex; 2.28A {Homo sapiens}
(M:24-164)
Length = 141
Score = 26.9 bits (59), Expect = 2.7
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
L IR +L R +G +L + A + A + V VR
Sbjct: 1 LSRRLIRTYQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDT-FGSRVRVRGAET 59
Query: 163 RK 164
Sbjct: 60 GL 61
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs,
induced-fitting, transferase; HET: ADP; 2.30A
{Thermococcus litoralis} (A:1-37,A:122-176,A:224-467)
Length = 336
Score = 26.7 bits (59), Expect = 2.9
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDL 55
V GV AGI+A L V I P K L G +
Sbjct: 30 VKGVLLAYAGIMANLLGG---VYRIPTIVHVPQNPKLQAELFVDGPI 73
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich,
hydrolase; HET: KCX; 2.40A {Lachancea kluyveri}
(A:57-439,A:511-559)
Length = 432
Score = 26.6 bits (57), Expect = 3.4
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 35 EEVITENPAKFINVLISKGDLAVGMVV--------TPNILEWV 69
E+ NPAK + KG A G + TP EWV
Sbjct: 364 VEIQCTNPAKVYGMYPQKGSNADGKYLKRGKSFMCTPKN-EWV 405
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal
binding protein; 1.9A {Mus musculus} (A:195-383)
Length = 189
Score = 26.0 bits (56), Expect = 4.6
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
V V E+P + + VG P ++ + F G + ++
Sbjct: 106 TVDGNSVRAESPHTHSTSADTNDPIYVGGY--PAHIKQNSLSSRASFRGCVRNLR 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 25.5 bits (56), Expect = 7.3
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 141 AVGGMIKPNDHVDVVMVRSLS-----ER 163
++ ++ V+VV R ++ R
Sbjct: 1 SLADVMSIESLVEVVFYRGMTMQVAVPR 28
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA;
3.00A {Bos taurus} (A:556-627,A:754-826)
Length = 145
Score = 25.6 bits (56), Expect = 7.8
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS----EDSDVW 237
++ G TL++ A V +V K VL L E +D+
Sbjct: 11 GGKEEKHHRPGQQITLKIE-ADQGARVGLVAVDKGVFVLNKKNKLTQRKIWDVVEKADIG 69
Query: 238 DVQEEGKEIQI 248
++I
Sbjct: 70 CTPIPEEDIIS 80
>1ihn_A Hypothetical protein MTH938; methanobacterium
thermoautotrophicum, unknown function; 2.20A
{Methanothermobacterthermautotrophicus} (A:)
Length = 113
Score = 25.2 bits (55), Expect = 9.8
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKG 53
L + + T K N S G
Sbjct: 73 GALETGFRSDATVLPTCEAIKRYNEERSAG 102
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.135 0.370
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,920,697
Number of extensions: 85861
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 16
Length of query: 263
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 176
Effective length of database: 2,015,014
Effective search space: 354642464
Effective search space used: 354642464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)