RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (263 letters) >1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} (A:) Length = 204 Score = 30.5 bits (67), Expect = 0.22 Identities = 13/55 (23%), Positives = 20/55 (36%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 V E IT + L + G L +G + ++ + F G I DV Sbjct: 126 QVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVI 180 >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} (A:9-123,A:273-301) Length = 144 Score = 27.1 bits (60), Expect = 2.5 Identities = 8/50 (16%), Positives = 20/50 (40%) Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + P + + N + G LV++P+ + I E++++ Sbjct: 60 THIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINA 109 >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A (A:1-79,A:358-473) Length = 195 Score = 27.2 bits (60), Expect = 2.6 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%) Query: 25 RLVSPHHVQTEEVI---TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + V + + + + N AK N+ KG +AVG I + + + Sbjct: 101 KAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNS 160 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPI 108 + E G + V I +G + Sbjct: 161 SLEYNIFEGMECRGSPLVV-ISQGKIV 186 >2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} (M:24-164) Length = 141 Score = 26.9 bits (59), Expect = 2.7 Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%) Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 L IR +L R +G +L + A + A + V VR Sbjct: 1 LSRRLIRTYQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDT-FGSRVRVRGAET 59 Query: 163 RK 164 Sbjct: 60 GL 61 >1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} (A:1-37,A:122-176,A:224-467) Length = 336 Score = 26.7 bits (59), Expect = 2.9 Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 5/47 (10%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDL 55 V GV AGI+A L V I P K L G + Sbjct: 30 VKGVLLAYAGIMANLLGG---VYRIPTIVHVPQNPKLQAELFVDGPI 73 >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} (A:57-439,A:511-559) Length = 432 Score = 26.6 bits (57), Expect = 3.4 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 9/43 (20%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVV--------TPNILEWV 69 E+ NPAK + KG A G + TP EWV Sbjct: 364 VEIQCTNPAKVYGMYPQKGSNADGKYLKRGKSFMCTPKN-EWV 405 >2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} (A:195-383) Length = 189 Score = 26.0 bits (56), Expect = 4.6 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 2/55 (3%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 V V E+P + + VG P ++ + F G + ++ Sbjct: 106 TVDGNSVRAESPHTHSTSADTNDPIYVGGY--PAHIKQNSLSSRASFRGCVRNLR 158 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 25.5 bits (56), Expect = 7.3 Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 5/28 (17%) Query: 141 AVGGMIKPNDHVDVVMVRSLS-----ER 163 ++ ++ V+VV R ++ R Sbjct: 1 SLADVMSIESLVEVVFYRGMTMQVAVPR 28 >2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} (A:556-627,A:754-826) Length = 145 Score = 25.6 bits (56), Expect = 7.8 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 5/71 (7%) Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS----EDSDVW 237 ++ G TL++ A V +V K VL L E +D+ Sbjct: 11 GGKEEKHHRPGQQITLKIE-ADQGARVGLVAVDKGVFVLNKKNKLTQRKIWDVVEKADIG 69 Query: 238 DVQEEGKEIQI 248 ++I Sbjct: 70 CTPIPEEDIIS 80 >1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} (A:) Length = 113 Score = 25.2 bits (55), Expect = 9.8 Identities = 6/30 (20%), Positives = 8/30 (26%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKG 53 L + + T K N S G Sbjct: 73 GALETGFRSDATVLPTCEAIKRYNEERSAG 102 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.135 0.370 Gapped Lambda K H 0.267 0.0639 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,920,697 Number of extensions: 85861 Number of successful extensions: 213 Number of sequences better than 10.0: 1 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 16 Length of query: 263 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 176 Effective length of database: 2,015,014 Effective search space: 354642464 Effective search space used: 354642464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 54 (24.8 bits)