RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (263 letters) >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 335 Score = 29.9 bits (66), Expect = 0.24 Identities = 7/23 (30%), Positives = 11/23 (47%) Query: 36 EVITENPAKFINVLISKGDLAVG 58 + + AK + KG +AVG Sbjct: 311 DAASTKAAKLFGLFPRKGTIAVG 333 >d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR {Escherichia coli [TaxId: 562]} Length = 272 Score = 25.4 bits (55), Expect = 4.5 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%) Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139 FI D H N EL ++ ++ G KL+D +LP+ A +D S Sbjct: 42 FIFDYHSLNDFDELVEAIIAKHLMTGHDTGFGKLIDE------KILPRVFGAYKLDKSYR 95 Query: 140 SAVGGMIKPN-DHVDVVMVR 158 +A I P D +D V+ R Sbjct: 96 AANEPFIHPCFDEIDHVIQR 115 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.135 0.370 Gapped Lambda K H 0.267 0.0719 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 939,962 Number of extensions: 43614 Number of successful extensions: 105 Number of sequences better than 10.0: 1 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 3 Length of query: 263 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 179 Effective length of database: 1,254,276 Effective search space: 224515404 Effective search space used: 224515404 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (23.8 bits)