RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
         (263 letters)



>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId:
           275]}
          Length = 335

 Score = 29.9 bits (66), Expect = 0.24
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 36  EVITENPAKFINVLISKGDLAVG 58
           +  +   AK   +   KG +AVG
Sbjct: 311 DAASTKAAKLFGLFPRKGTIAVG 333


>d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR
           {Escherichia coli [TaxId: 562]}
          Length = 272

 Score = 25.4 bits (55), Expect = 4.5
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139
           FI D H  N   EL   ++   ++ G      KL+D        +LP+   A  +D S  
Sbjct: 42  FIFDYHSLNDFDELVEAIIAKHLMTGHDTGFGKLIDE------KILPRVFGAYKLDKSYR 95

Query: 140 SAVGGMIKPN-DHVDVVMVR 158
           +A    I P  D +D V+ R
Sbjct: 96  AANEPFIHPCFDEIDHVIQR 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 939,962
Number of extensions: 43614
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)