BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
         (263 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 263

 Score =  520 bits (1338), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV
Sbjct: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG
Sbjct: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID
Sbjct: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
           HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ
Sbjct: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240

Query: 241 EEGKEIQIIKAGVIVNKDGEGIS 263
           EEGKEIQIIKAGVIVNKDGEGIS
Sbjct: 241 EEGKEIQIIKAGVIVNKDGEGIS 263


>gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 261

 Score = 26.6 bits (57), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249
           A S+ +L  +LRS  D +  S+  S +   Q EG+++ II
Sbjct: 74  ACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMII 113


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 466

 Score = 24.6 bits (52), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
           +ID DE+V+V ST  L  + +    LV    V  L L
Sbjct: 153 SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLEL 189


>537021.9.peg.363_1 
          Length = 79

 Score = 24.3 bits (51), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPIL 103
           DG + D++ P+  Q  + +   VPI+
Sbjct: 54  DGLVKDINTPDKQQTKNPITSSVPII 79


>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 692

 Score = 23.9 bits (50), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT--LELTPMQ 203
             P D++ VV+       +  ++ +LS   V  +   +D + + L   T +  +  + +Q
Sbjct: 475 FHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQ 534

Query: 204 A--KALVAAQ-SVAKLSLVLRSIADLNPSSSEDSDV 236
           A  K L+A   S+  L L+L SIA++ P S + S +
Sbjct: 535 AVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHI 570


>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
           subunits [Candidatus Liberibacter asiaticus str. psy62]
          Length = 528

 Score = 23.5 bits (49), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFI 46
           +F +  GI  + L+  H+V T E+     A+F+
Sbjct: 199 IFFVSCGIFIVFLIGAHYVATAEMPRGKLAEFV 231


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,201
Number of Sequences: 1233
Number of extensions: 6312
Number of successful extensions: 20
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 7
length of query: 263
length of database: 328,796
effective HSP length: 72
effective length of query: 191
effective length of database: 240,020
effective search space: 45843820
effective search space used: 45843820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 37 (18.9 bits)