HHsearch alignment for GI: 254780729 and conserved domain: COG4960
>COG4960 CpaA Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].
Probab=99.97 E-value=2.2e-30 Score=192.90 Aligned_cols=166 Identities=37% Similarity=0.621 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 55999999999999999999998897501248999999999999960789979999999999999999999998200172
Q gi|254780729|r 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 (176)
Q Consensus 4 ~~mi~~~~~~i~~~~Lv~~a~~Dl~~~~IPn~l~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~mG~ 83 (176)
T Consensus 1 ~~~~~~~~~l~~~~~~~~aa~sDi~s~~IpN~lv~~ll~~~~i~a~~~~~~la~~~~~~~~~~i~l~~~f~Lfa~g~MGg 80 (168)
T COG4960 1 MDMIIASLFLIFPVLLVFAAYSDIRSRTIPNRLVLVLLLAFAILAPVAGMPLAGAGLSLAGAAIALALGFGLFALGVMGG 80 (168)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 92889999999999999999999878200448999999999999998478589979999999999999999998276675
Q ss_pred CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 04999999999834066799999999999999999999930234433-21112110222112898819999999999996
Q gi|254780729|r 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI-PIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162 (176)
Q Consensus 84 GDvKL~aa~g~~lG~~~~l~~~l~~s~i~G~v~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~iPfG~aia~g~l~~~~ 162 (176)
T Consensus 81 GDvKLlav~~l~~g~~~~L~-f~l~t~v~Ggvltv~iLllr~~~~~~~~~~~~~~~~~~~~~~~iPyg~Ai~~g~laa~~ 159 (168)
T COG4960 81 GDVKLLAVLGLWLGPLQALY-FLLYTSVAGGVLTVAILLLRRVDLSAAAFKAPWLRRLLTPKGSIPYGVAIALGALAALP 159 (168)
T ss_pred CHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCCHHHCCCHHHHHCC
T ss_conf 13999999999808488999-99999999999999999996016678755661667605867787600201407998664
Q ss_pred HHHHHHHH
Q ss_conf 31999999
Q gi|254780729|r 163 DSYLFKVA 170 (176)
Q Consensus 163 ~~~~~~~~ 170 (176)
T Consensus 160 ~~~l~~~~ 167 (168)
T COG4960 160 ISPLMVSA 167 (168)
T ss_pred CCHHHHHH
T ss_conf 11788861