Query gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 130 out of 1096
Neff 6.9
Searched_HMMs 33803
Date Wed Jun 1 14:33:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780729.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1x9m_A DNA polymerase; DNA pl 17.0 27 0.0008 13.9 -0.4 14 80-93 26-39 (56)
2 >3e7j_A Heparinase II protein; 10.4 81 0.0024 11.1 0.4 16 71-86 14-29 (92)
3 >2vda_B Maltoporin; sugar tran 6.9 1.2E+02 0.0035 10.2 1.6 16 142-157 6-21 (28)
4 >2qq6_A Mandelate racemase/muc 4.8 1.8E+02 0.0054 9.1 3.2 42 108-149 88-129 (141)
5 >2kbz_A GP15, 15 protein (bact 4.7 1.9E+02 0.0056 9.0 2.9 24 143-166 42-65 (99)
6 >2vpz_A Thiosulfate reductase; 4.1 2.2E+02 0.0066 8.6 1.0 17 136-152 223-239 (257)
7 >1rg6_A Second splice variant 3.8 2.4E+02 0.0071 8.4 0.7 18 23-40 41-58 (75)
8 >2goi_A Sperm lysozyme-like pr 3.4 2.8E+02 0.0083 8.0 0.7 13 28-40 23-35 (43)
9 >1dxs_A P53-like transcription 3.4 2.8E+02 0.0083 8.0 1.1 17 23-39 40-56 (80)
10 >1wqe_A OMTX3; structure, scor 3.3 2.8E+02 0.0084 8.0 0.2 4 84-87 13-16 (26)
No 1
>>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} (A:498-553)
Probab=17.03 E-value=27 Score=13.88 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=10.2
Q ss_pred HCCCCHHHHHHHHH
Q ss_conf 01720499999999
Q gi|254780729|r 80 IMGGGDVKLLTSTA 93 (176)
Q Consensus 80 ~mG~GDvKL~aa~g 93 (176)
-.|+||.|+...+|
T Consensus 26 lYGaGd~KiG~~~g 39 (56)
T 1x9m_A 26 LYGAGDEKIGQIVG 39 (56)
T ss_dssp HTTCCHHHHHTTTT
T ss_pred HCCHHHHHHHHHCC
T ss_conf 41400445554200
No 2
>>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar binding protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinum} PDB: 3e80_A* 2fut_A* 2fuq_A* (A:229-320)
Probab=10.37 E-value=81 Score=11.13 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=11.4
Q ss_pred HHHHHHHHHHCCCCHH
Q ss_conf 9999998200172049
Q gi|254780729|r 71 ICFCFFAFNIMGGGDV 86 (176)
Q Consensus 71 l~~~l~~~~~mG~GDv 86 (176)
=++.+|..+.||+|.|
T Consensus 14 DLF~LWIL~rMGAG~i 29 (92)
T 3e7j_A 14 DLFALWILDRMGAGNV 29 (92)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999986618520
No 3
>>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli} (B:)
Probab=6.94 E-value=1.2e+02 Score=10.18 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=11.7
Q ss_pred HCCCCCCCHHHHHHHH
Q ss_conf 1128988199999999
Q gi|254780729|r 142 LMKNKIPYGIAISMGG 157 (176)
Q Consensus 142 ~~~~~iPfG~aia~g~ 157 (176)
.+++++|.+++.+.|-
T Consensus 6 rkrrklplavavaagv 21 (28)
T 2vda_B 6 RKRRKLPLAVAVAAGV 21 (28)
T ss_dssp CCCCCCTHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHH
T ss_conf 4324562789998735
No 4
>>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} (A:1-113,A:383-410)
Probab=4.80 E-value=1.8e+02 Score=9.11 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 999999999999999302344332111211022211289881
Q gi|254780729|r 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149 (176)
Q Consensus 108 ~s~i~G~v~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~iPf 149 (176)
.++.++.=.++.-+..|....+.........+....+.++||
T Consensus 88 ~~A~sAID~ALwDl~gK~~g~Pl~~L~~~~~~~~~~~~~~~~ 129 (141)
T 2qq6_A 88 ITALSGIETALWDLAGKLQGVPVYRLEEAAFEHRHEKGGVPF 129 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGGHHHHHTTBCC--CCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 889999999999997523463677869999348798789997
No 5
>>2kbz_A GP15, 15 protein (bacteriophage SPP1 complete nucleotide sequence); three alpha-helix bundle, viral protein; NMR {Bacillus phage SPP1} (A:)
Probab=4.65 E-value=1.9e+02 Score=9.01 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=18.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 128988199999999999963199
Q gi|254780729|r 143 MKNKIPYGIAISMGGLISYPDSYL 166 (176)
Q Consensus 143 ~~~~iPfG~aia~g~l~~~~~~~~ 166 (176)
.+..+|+|+.+.++-.+-|.+.+.
T Consensus 42 g~~~lP~gV~kfiAe~ik~y~~~~ 65 (99)
T 2kbz_A 42 GNESIPSGVLIFVAKAAQFYMTNA 65 (99)
T ss_dssp SCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 765588269999999998538867
No 6
>>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* (A:172-393,A:570-604)
Probab=4.08 E-value=2.2e+02 Score=8.61 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=12.1
Q ss_pred CCHHHHHCCCCCCCHHH
Q ss_conf 11022211289881999
Q gi|254780729|r 136 FVPKSFLMKNKIPYGIA 152 (176)
Q Consensus 136 ~~~~~~~~~~~iPfG~a 152 (176)
+..+.++++.++|||.+
T Consensus 223 ~~~~~~~~~~~~~~~~~ 239 (257)
T 2vpz_A 223 PWLEDWEKEGRLPFGTA 239 (257)
T ss_dssp CSSHHHHTTTCCCSSSS
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 64333322356777778
No 7
>>1rg6_A Second splice variant P63; P73 SAM-like domain, gene regulation; NMR {Homo sapiens} (A:)
Probab=3.83 E-value=2.4e+02 Score=8.41 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCHHHHHHH
Q ss_conf 999889750124899999
Q gi|254780729|r 23 ALSDLFSAMIPNRVSIVM 40 (176)
Q Consensus 23 a~~Dl~~~~IPn~l~l~~ 40 (176)
+.-|+..++||+..--.+
T Consensus 41 tlEDL~~mkIp~q~r~~I 58 (75)
T 1rg6_A 41 SMDDLASLKIPEQFRHAI 58 (75)
T ss_dssp CHHHHHTTTCCTHHHHHH
T ss_pred CHHHHHCCCCCHHHHHHH
T ss_conf 898886277737776110
No 8
>>2goi_A Sperm lysozyme-like protein 1; mouse SLLP1, MSLLP1, sperm C-type lysozyme-like protein 1, acrosomal sperm protein, sperm-egg binding, fertilization; 2.30A {Mus musculus} (A:1-43)
Probab=3.40 E-value=2.8e+02 Score=8.04 Aligned_cols=13 Identities=8% Similarity=0.072 Sum_probs=7.3
Q ss_pred HHHHCCHHHHHHH
Q ss_conf 9750124899999
Q gi|254780729|r 28 FSAMIPNRVSIVM 40 (176)
Q Consensus 28 ~~~~IPn~l~l~~ 40 (176)
...-+|||+++.-
T Consensus 23 ~~~~l~~WvCla~ 35 (43)
T 2goi_A 23 RGYNLADWVCLAY 35 (43)
T ss_dssp GGCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 4004878888877
No 9
>>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} (A:)
Probab=3.39 E-value=2.8e+02 Score=8.04 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=11.8
Q ss_pred HHHHHHHHHCCHHHHHH
Q ss_conf 99988975012489999
Q gi|254780729|r 23 ALSDLFSAMIPNRVSIV 39 (176)
Q Consensus 23 a~~Dl~~~~IPn~l~l~ 39 (176)
+.-|+..++||+..--.
T Consensus 40 tlEDL~~mkIp~q~r~~ 56 (80)
T 1dxs_A 40 TIEDLGALKIPEQYRMT 56 (80)
T ss_dssp CHHHHHHTTCCTTTHHH
T ss_pred CHHHHHCCCCCHHHHHH
T ss_conf 89888717773888877
No 10
>>1wqe_A OMTX3; structure, scorpion toxin, cystine-stabilized helix- turn-helix; NMR {Opisthacanthus madagascariensis} (A:)
Probab=3.35 E-value=2.8e+02 Score=7.99 Aligned_cols=4 Identities=100% Similarity=1.489 Sum_probs=0.0
Q ss_pred CHHH
Q ss_conf 0499
Q gi|254780729|r 84 GDVK 87 (176)
Q Consensus 84 GDvK 87 (176)
||||
T Consensus 13 gdvk 16 (26)
T 1wqe_A 13 GDVK 16 (26)
T ss_dssp CCHH
T ss_pred CCHH
T ss_conf 8578
Done!