Query gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 130 out of 1096
Neff 6.9
Searched_HMMs 23785
Date Tue May 31 17:04:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780729.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vda_B Maltoporin; sugar trans 6.9 84 0.0035 10.2 1.6 16 142-157 6-21 (28)
2 2knc_A Integrin alpha-IIB; tra 6.7 86 0.0036 10.1 2.4 10 106-115 15-24 (54)
3 1rg6_A Second splice variant P 4.4 1.4E+02 0.006 8.8 0.7 18 23-40 41-58 (75)
4 2kbz_A GP15, 15 protein (bacte 4.0 1.6E+02 0.0067 8.6 2.9 22 144-165 43-64 (99)
5 2cp8_A NEXT to BRCA1 gene 1 pr 4.0 1.6E+02 0.0068 8.5 0.4 11 80-90 18-28 (54)
6 2kr6_A Presenilin-1; protease, 3.5 1.9E+02 0.0079 8.2 5.4 46 80-127 89-140 (176)
7 1s7q_A H-2KB, H-2 class I hist 3.2 2.1E+02 0.0088 7.9 0.0 14 112-125 299-312 (348)
8 2xet_A CAF1A usher, F1 capsule 3.0 2.1E+02 0.0087 7.9 -0.2 11 140-150 9-19 (89)
9 1h8b_B Titin, ZR7; structural 2.7 2.5E+02 0.011 7.4 0.2 22 129-150 28-49 (53)
10 3bz1_J PSII-J, photosystem II 2.7 2.6E+02 0.011 7.4 2.7 22 28-49 4-25 (40)
No 1
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=6.94 E-value=84 Score=10.18 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=11.7
Q ss_pred HCCCCCCCHHHHHHHH
Q ss_conf 1128988199999999
Q gi|254780729|r 142 LMKNKIPYGIAISMGG 157 (176)
Q Consensus 142 ~~~~~iPfG~aia~g~ 157 (176)
.+++++|.+++.+.|-
T Consensus 6 rkrrklplavavaagv 21 (28)
T 2vda_B 6 RKRRKLPLAVAVAAGV 21 (28)
T ss_dssp CCCCCCTHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHH
T ss_conf 4324562789998735
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=6.74 E-value=86 Score=10.12 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780729|r 106 LFFVAILGGI 115 (176)
Q Consensus 106 l~~s~i~G~v 115 (176)
++.+.++|.+
T Consensus 15 Iivsv~~GlL 24 (54)
T 2knc_A 15 VLVGVLGGLL 24 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 6999999999
No 3
>1rg6_A Second splice variant P63; P73 SAM-like domain, gene regulation; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=4.42 E-value=1.4e+02 Score=8.85 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=11.9
Q ss_pred HHHHHHHHHCCHHHHHHH
Q ss_conf 999889750124899999
Q gi|254780729|r 23 ALSDLFSAMIPNRVSIVM 40 (176)
Q Consensus 23 a~~Dl~~~~IPn~l~l~~ 40 (176)
+.-|+..++||+..--.+
T Consensus 41 sleDL~~mkIp~~~r~~I 58 (75)
T 1rg6_A 41 SMDDLASLKIPEQFRHAI 58 (75)
T ss_dssp CHHHHHTTTCCTHHHHHH
T ss_pred CHHHHHCCCCCHHHHHHH
T ss_conf 898886277737776110
No 4
>2kbz_A GP15, 15 protein (bacteriophage SPP1 complete nucleotide sequence); three alpha-helix bundle, viral protein; NMR {Bacillus phage SPP1}
Probab=4.05 E-value=1.6e+02 Score=8.58 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2898819999999999996319
Q gi|254780729|r 144 KNKIPYGIAISMGGLISYPDSY 165 (176)
Q Consensus 144 ~~~iPfG~aia~g~l~~~~~~~ 165 (176)
+..+|+|+.+.++-.+-|.+.+
T Consensus 43 ~~~lP~gV~kfiAe~ikfy~~~ 64 (99)
T 2kbz_A 43 NESIPSGVLIFVAKAAQFYMTN 64 (99)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCC
T ss_conf 6558826999999999864886
No 5
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=3.98 E-value=1.6e+02 Score=8.53 Aligned_cols=11 Identities=36% Similarity=0.151 Sum_probs=6.6
Q ss_pred HCCCCHHHHHH
Q ss_conf 01720499999
Q gi|254780729|r 80 IMGGGDVKLLT 90 (176)
Q Consensus 80 ~mG~GDvKL~a 90 (176)
-||.+|.++--
T Consensus 18 eMGF~drqlN~ 28 (54)
T 2cp8_A 18 EMGFCDRQLNL 28 (54)
T ss_dssp HHTCCCHHHHH
T ss_pred HCCCCCHHHHH
T ss_conf 91765289999
No 6
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=3.54 E-value=1.9e+02 Score=8.16 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=28.5
Q ss_pred HCCCCHHHHHHHH---HHH---HCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0172049999999---998---34066799999999999999999999930234
Q gi|254780729|r 80 IMGGGDVKLLTST---AVW---FGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 (176)
Q Consensus 80 ~mG~GDvKL~aa~---g~~---lG~~~~l~~~l~~s~i~G~v~~l~~l~~~~~~ 127 (176)
.+|.||.-..+.+ +.- -.|. ... .++.+.+.|...-+.++...++.
T Consensus 89 kLGlGDFiFYSvLvg~a~~~~~~~~~-t~~-~c~vail~GL~~TL~lL~~~~~a 140 (176)
T 2kr6_A 89 KLGLGDFIFYSVLVGKASATASGDWN-TTI-ACFVAILIGLCLTLLLLAIFKKA 140 (176)
T ss_dssp SSCTTTHHHHHHHHHHHHHHSCCTTT-THH-HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred EECCCCEEEEEEEHHHHHHCCCCCHH-HHH-HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 31467858754234667740577699-999-99999999999999999987034
No 7
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 1s7u_A 1s7v_A 1s7w_A 1s7x_A 1nez_A*
Probab=3.24 E-value=2.1e+02 Score=7.89 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999999302
Q gi|254780729|r 112 LGGILSVFILTVRM 125 (176)
Q Consensus 112 ~G~v~~l~~l~~~~ 125 (176)
.+++++.++..+||
T Consensus 299 ~~~v~~~~~~~rrr 312 (348)
T 1s7q_A 299 TGAVVAFVMKMRRR 312 (348)
T ss_dssp --------------
T ss_pred HHHEEEEEEEEEEC
T ss_conf 98603889999965
No 8
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=3.01 E-value=2.1e+02 Score=7.91 Aligned_cols=11 Identities=18% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHCCCCCCCH
Q ss_conf 22112898819
Q gi|254780729|r 140 SFLMKNKIPYG 150 (176)
Q Consensus 140 ~~~~~~~iPfG 150 (176)
....++++|||
T Consensus 9 ~~~dG~~lPfG 19 (89)
T 2xet_A 9 KRSDNKPVPFG 19 (89)
T ss_dssp EETTSCBCCTT
T ss_pred ECCCCCCCCCC
T ss_conf 95687898971
No 9
>1h8b_B Titin, ZR7; structural protein, Z-DISK structural complex; NMR {Oryctolagus cuniculus}
Probab=2.74 E-value=2.5e+02 Score=7.39 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCCCCCCCCHHHHHCCCCCCCH
Q ss_conf 3321112110222112898819
Q gi|254780729|r 129 HIPIFGMFVPKSFLMKNKIPYG 150 (176)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~iPfG 150 (176)
+.|+......++..+++.+-||
T Consensus 28 reprep~~~~esyaqqttleyg 49 (53)
T 1h8b_B 28 REPREPGLPEDSYAQQTTLEYG 49 (53)
T ss_dssp TCCC------------------
T ss_pred CCCCCCCCHHHHHHHHHHHHHC
T ss_conf 4888899825667777687633
No 10
>3bz1_J PSII-J, photosystem II reaction center protein J; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz2_J* 3kzi_J*
Probab=2.73 E-value=2.6e+02 Score=7.38 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 9750124899999999999996
Q gi|254780729|r 28 FSAMIPNRVSIVMLGSFLLTAF 49 (176)
Q Consensus 28 ~~~~IPn~l~l~~~~~~l~~~~ 49 (176)
.+.|||-|++-...-.+.+...
T Consensus 4 ~tGriPLWlv~tv~G~~vi~~v 25 (40)
T 3bz1_J 4 EGGRIPLWIVATVAGMGVIVIV 25 (40)
T ss_dssp ---CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEHHHHHHHHHH
T ss_conf 7786437744540004267631
Done!