Query gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 130 out of 1096
Neff 6.9
Searched_HMMs 13730
Date Wed Jun 1 07:52:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780729.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rg6a_ a.60.1.2 (A:) C-termin 5.2 68 0.0049 9.3 0.7 17 23-39 37-53 (67)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 3.0 1.3E+02 0.0095 7.7 1.9 20 78-97 52-78 (103)
3 d1eg3a3 b.72.1.1 (A:47-84) Dys 2.8 1.3E+02 0.0093 7.7 -0.3 13 137-149 14-26 (38)
4 d1v8aa_ c.72.1.2 (A:) Hydroxye 2.7 1.5E+02 0.011 7.3 3.5 22 82-104 192-213 (264)
5 d1atia2 d.104.1.1 (A:1-394) Gl 2.4 82 0.006 8.8 -1.6 9 144-152 205-213 (394)
6 d1uxya2 d.146.1.1 (A:201-342) 2.4 1.8E+02 0.013 6.9 1.7 15 20-34 6-20 (142)
7 d1j6ua2 c.59.1.1 (A:296-446) U 2.3 1.8E+02 0.013 6.8 1.1 10 81-90 131-140 (151)
8 d1ussa_ a.4.5.13 (A:) Histone 2.1 2E+02 0.014 6.6 1.6 11 1-11 8-18 (88)
9 d1ogda_ c.133.1.1 (A:) Ribose 2.1 2E+02 0.015 6.6 0.9 12 74-85 11-22 (131)
10 d1kcpa_ g.3.6.1 (A:) Conotoxin 2.1 2E+02 0.015 6.6 0.1 4 31-34 2-5 (27)
No 1
>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.16 E-value=68 Score=9.33 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=11.6
Q ss_pred HHHHHHHHHCCHHHHHH
Q ss_conf 99988975012489999
Q gi|254780729|r 23 ALSDLFSAMIPNRVSIV 39 (176)
Q Consensus 23 a~~Dl~~~~IPn~l~l~ 39 (176)
+.-|+..++||+..--.
T Consensus 37 sleDL~~mkIp~~~r~~ 53 (67)
T d1rg6a_ 37 SMDDLASLKIPEQFRHA 53 (67)
T ss_dssp CHHHHHTTTCCTHHHHH
T ss_pred CHHHHHCCCCCHHHHHH
T ss_conf 89888707674888888
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.02 E-value=1.3e+02 Score=7.68 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=12.1
Q ss_pred HHHCCCCHH-------HHHHHHHHHHC
Q ss_conf 200172049-------99999999834
Q gi|254780729|r 78 FNIMGGGDV-------KLLTSTAVWFG 97 (176)
Q Consensus 78 ~~~mG~GDv-------KL~aa~g~~lG 97 (176)
.--.|-||+ |+.+.+-...|
T Consensus 52 ~tTvGYGDi~P~t~~gr~~~~~~~~~G 78 (103)
T d1r3jc_ 52 ATTVGYGDLYPVTLWGRCVAVVVMVAG 78 (103)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 334566765358861799999999999
No 3
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.77 E-value=1.3e+02 Score=7.74 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=6.5
Q ss_pred CHHHHHCCCCCCC
Q ss_conf 1022211289881
Q gi|254780729|r 137 VPKSFLMKNKIPY 149 (176)
Q Consensus 137 ~~~~~~~~~~iPf 149 (176)
++++....+.+||
T Consensus 14 PWeRait~n~VPY 26 (38)
T d1eg3a3 14 PWERAISPNKVPY 26 (38)
T ss_dssp TEEEEECTTSCEE
T ss_pred CHHHHCCCCCCCE
T ss_conf 4544025568874
No 4
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.68 E-value=1.5e+02 Score=7.32 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHCHHHHHHH
Q ss_conf 72049999999998340667999
Q gi|254780729|r 82 GGGDVKLLTSTAVWFGWTPSFLS 104 (176)
Q Consensus 82 G~GDvKL~aa~g~~lG~~~~l~~ 104 (176)
|.||+ |.+.++.+++....+.+
T Consensus 192 GtGc~-Ls~~iaa~la~~~~~~A 213 (264)
T d1v8aa_ 192 GTGCM-VAALTGAFVAVTEPLKA 213 (264)
T ss_dssp THHHH-HHHHHHHHHTTSCHHHH
T ss_pred CCCHH-HHHHHHHHHHCCCHHHH
T ss_conf 30479-99999999846998999
No 5
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=2.42 E-value=82 Score=8.84 Aligned_cols=9 Identities=44% Similarity=0.848 Sum_probs=0.0
Q ss_pred CCCCCCHHH
Q ss_conf 289881999
Q gi|254780729|r 144 KNKIPYGIA 152 (176)
Q Consensus 144 ~~~iPfG~a 152 (176)
++++|||++
T Consensus 205 r~KlPFGiA 213 (394)
T d1atia2 205 SRKLGFGIA 213 (394)
T ss_dssp TCCSSEEEE
T ss_pred CCCCCCEEE
T ss_conf 567880112
No 6
>d1uxya2 d.146.1.1 (A:201-342) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.36 E-value=1.8e+02 Score=6.94 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCH
Q ss_conf 999999889750124
Q gi|254780729|r 20 VFAALSDLFSAMIPN 34 (176)
Q Consensus 20 v~~a~~Dl~~~~IPn 34 (176)
+.-+++.+|..++||
T Consensus 6 i~~~v~~iR~~klPd 20 (142)
T d1uxya2 6 VFNAVCHMRTTKLPD 20 (142)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999999544999
No 7
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=2.29 E-value=1.8e+02 Score=6.84 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=0.0
Q ss_pred CCCCHHHHHH
Q ss_conf 1720499999
Q gi|254780729|r 81 MGGGDVKLLT 90 (176)
Q Consensus 81 mG~GDvKL~a 90 (176)
||.||+-..+
T Consensus 131 ~GaGdi~~~~ 140 (151)
T d1j6ua2 131 VGAGDIIYSS 140 (151)
T ss_dssp ECSSTHHHHH
T ss_pred ECCCCHHHHH
T ss_conf 7499799998
No 8
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.14 E-value=2e+02 Score=6.65 Aligned_cols=11 Identities=9% Similarity=0.416 Sum_probs=0.0
Q ss_pred CCHHHHHHHHH
Q ss_conf 97455999999
Q gi|254780729|r 1 MKESKMVFSAV 11 (176)
Q Consensus 1 m~~~~mi~~~~ 11 (176)
+.|.+||..++
T Consensus 8 ~sy~~MI~eAI 18 (88)
T d1ussa_ 8 LTYKEMILKSM 18 (88)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 98999999999
No 9
>d1ogda_ c.133.1.1 (A:) Ribose transport protein RbsD {Bacillus subtilis [TaxId: 1423]}
Probab=2.11 E-value=2e+02 Score=6.60 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCH
Q ss_conf 999820017204
Q gi|254780729|r 74 CFFAFNIMGGGD 85 (176)
Q Consensus 74 ~l~~~~~mG~GD 85 (176)
+++....||-||
T Consensus 11 Ll~~La~mGHgD 22 (131)
T d1ogda_ 11 LAKILADLGHTD 22 (131)
T ss_dssp HHHHHHHCCTTC
T ss_pred HHHHHHHCCCCC
T ss_conf 999999769998
No 10
>d1kcpa_ g.3.6.1 (A:) Conotoxin {Conus purpurascens, kappa-pVIIa [TaxId: 41690]}
Probab=2.09 E-value=2e+02 Score=6.58 Aligned_cols=4 Identities=75% Similarity=1.140 Sum_probs=0.0
Q ss_pred HCCH
Q ss_conf 0124
Q gi|254780729|r 31 MIPN 34 (176)
Q Consensus 31 ~IPn 34 (176)
+|||
T Consensus 2 ripn 5 (27)
T d1kcpa_ 2 RIPN 5 (27)
T ss_dssp BCTT
T ss_pred CCCC
T ss_conf 8870
Done!