BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type
IV [Candidatus Liberibacter asiaticus str. psy62]
(176 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|315121893|ref|YP_004062382.1| peptidase A24A prepilin type IV [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495295|gb|ADR51894.1| peptidase A24A prepilin type IV [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 178
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 117/175 (66%), Positives = 144/175 (82%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
MKE KMVFS +FL+ PFCL+ A LSDLFS MIPNR+S+V+LGSFLL A +G+ YE IAL
Sbjct: 1 MKEDKMVFSVIFLVLPFCLISAGLSDLFSTMIPNRISVVLLGSFLLIAPFVGLGYEEIAL 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
H+LVGL VFI CF FF+ NIMGGGD KLLT+ ++WFGW S L FLF+VAI GGIL++ +
Sbjct: 61 HVLVGLFVFIACFFFFSVNIMGGGDAKLLTTASLWFGWNISLLYFLFYVAIFGGILALVV 120
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
L +R IT +IP+ FVP+SF MKNKIPYG+AIS+GGL+SYPDS+LFK+AL G+S
Sbjct: 121 LLIREITRYIPLLDKFVPRSFHMKNKIPYGVAISIGGLVSYPDSHLFKIALEGIS 175
>gi|332531739|ref|ZP_08407624.1| leader peptidase [Pseudoalteromonas haloplanktis ANT/505]
gi|332038715|gb|EGI75157.1| leader peptidase [Pseudoalteromonas haloplanktis ANT/505]
Length = 297
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 67/172 (38%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGL 66
+ +++ + LV D+ ++P+++++ ++ L+ + + + + G
Sbjct: 139 QALLYIFVTWILVALTFIDIDHMLLPDQLTLPLVWLALIASVMGYTITPTDAIIGAACGY 198
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL GW S L+ + +++G I+ + +L+
Sbjct: 199 LSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQ-SLLTIILLSSVVGAIIGIALLS 257
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
++ IP+G +++ G I+ + A L
Sbjct: 258 IQGK---------------DKATPIPFGPYLAIAGWITMLWGNQIQGAYFNL 294
>gi|77359346|ref|YP_338921.1| leader peptide processing enzyme [Pseudoalteromonas haloplanktis
TAC125]
gi|76874257|emb|CAI85478.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Pseudoalteromonas haloplanktis TAC125]
Length = 291
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGL 66
+ +++ + LV D+ ++P+++++ ++ L+ A L + + G
Sbjct: 133 QALLYIAITWALVALTFIDIDHMLLPDQITLPLVWLALIAAVLGYTVTPTDAIIGAACGY 192
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL GW S L+ + +++G I+ + +LT
Sbjct: 193 LSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQ-SLLTIILLSSVVGAIIGIALLT 251
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
++ IP+G +++ G I+ + + L
Sbjct: 252 IQGK---------------DKATPIPFGPYLAIAGWITMLWGEQLQTSYFNL 288
>gi|194366950|ref|YP_002029560.1| Prepilin peptidase [Stenotrophomonas maltophilia R551-3]
gi|194349754|gb|ACF52877.1| Prepilin peptidase [Stenotrophomonas maltophilia R551-3]
Length = 287
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ L+ + DL + ++P+++++ ++ L+ + L M + + VG +
Sbjct: 133 IVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGSIDNLYMPAKPALVGAAVGYLSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + I S+++ +
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILLSSVLGAIIGSIWLYSRGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G +++ G + + + +S
Sbjct: 251 --------------DRATPIPFGPYLAIAGWLYFMWGAPVVEQYLLMS 284
>gi|71278916|ref|YP_271097.1| type 4 prepilin-like proteins leader peptide processing enzyme PilD
[Colwellia psychrerythraea 34H]
gi|71144656|gb|AAZ25129.1| type 4 prepilin-like proteins leader peptide processing enzyme PilD
[Colwellia psychrerythraea 34H]
Length = 301
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 22/177 (12%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHL 62
+ + L+ +CL+ + D ++P+++++ +L LL + +
Sbjct: 140 GATISTLWVLLLTWCLITLTMIDFDHMLLPDQITLPLLWLGLLININGTFIPLPDAVIGA 199
Query: 63 LVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
VG + F F MG GD KL W GW + +++G I+ +
Sbjct: 200 AVGYMSLFSVFWLFKVITGKEGMGYGDFKLFAVFGAWIGWQ-LLPILILMASVVGAIVGI 258
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + + IP+G +++ G I+ ++ L +
Sbjct: 259 TLMLFKN---------------HQREQGIPFGPYLAVAGWITLLWGDGIWSWYLQKI 300
>gi|120555594|ref|YP_959945.1| prepilin peptidase [Marinobacter aquaeolei VT8]
gi|120325443|gb|ABM19758.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Marinobacter aquaeolei VT8]
Length = 291
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 21/170 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ L+ + LV + D + ++P+ +++ ++ L+ + + D+ + G +
Sbjct: 134 ALWALLMVWALVALTVIDFDTQLLPDGITLPLMWLGLVLNYFGVLTDFSSAFWGAVAGYL 193
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + W GW + + +++G I+ + ++
Sbjct: 194 SLWSVYWLFKLATGKEGMGHGDFKLLAALGAWLGWQ-LLPAVILLSSLVGAIVGISLMAF 252
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
R + IP+G ++ GL+S + G
Sbjct: 253 RK---------------HGREVPIPFGPYLAAAGLLSLWFGPEIQAIWFG 287
>gi|109899647|ref|YP_662902.1| prepilin peptidase [Pseudoalteromonas atlantica T6c]
gi|109701928|gb|ABG41848.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Pseudoalteromonas atlantica T6c]
Length = 300
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 63/168 (37%), Gaps = 21/168 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLI 67
+ ++ + LV D+ + ++P+++++ +L LL + + + + G +
Sbjct: 142 ALAAVVLTWVLVALIFIDIDTMLLPDQLTLPLLWMGLLFSIINPDVTPTDSIIGATTGYL 201
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + W GW + +++G ++ + ILT+
Sbjct: 202 SLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQY-LPIVILMSSLVGAVIGISILTI 260
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ IP+G +++ G ++
Sbjct: 261 QGK---------------DKGQAIPFGPYLAIAGWLTLLYGDWISDYY 293
>gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040406|gb|ACT57202.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus
str. psy62]
Length = 176
Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL
Sbjct: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI
Sbjct: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA
Sbjct: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
>gi|167622408|ref|YP_001672702.1| prepilin peptidase [Shewanella halifaxensis HAW-EB4]
gi|167352430|gb|ABZ75043.1| Prepilin peptidase [Shewanella halifaxensis HAW-EB4]
Length = 303
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 21/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ A+ + FCLV DL ++P+++++ +L L+ + G
Sbjct: 146 LEFALTSLLTFCLVALTGIDLDEMLLPDQITLPLLWLGLIINLSGTFATTSDALIGAAAG 205
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F F + MG GD KLL WFGW + +++G ++ + ++
Sbjct: 206 YLSLWSVFWLFKLLTGKDGMGYGDFKLLAVFGAWFGWQ-VLPLVILLSSLVGAVVGIALI 264
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ N IP+G I+ G I+
Sbjct: 265 VFKK---------------LNHGNPIPFGPYIAAAGWIAMIWGE 293
>gi|330720594|gb|EGG98859.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase [gamma
proteobacterium IMCC2047]
Length = 290
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 21/170 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ + D ++P+ +++ +L L+ F L + G
Sbjct: 132 QGGLMLLLTWALITLTMIDFDHQLLPDSITLPLLWIGLIANSFGLFCSLPEALWGAVFGY 191
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL WFGW + +++G I+ +F+L
Sbjct: 192 LSLWSVYWLFKLLTGKEGMGYGDFKLLAVLGAWFGWQ-LLPMIILLSSLVGAIVGIFLLV 250
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
++ +P IP+G ++ G I+ +
Sbjct: 251 LKNRGKSVP---------------IPFGPYLAAAGFITAIWGEQITRLYL 285
>gi|217975016|ref|YP_002359767.1| Prepilin peptidase [Shewanella baltica OS223]
gi|217500151|gb|ACK48344.1| Prepilin peptidase [Shewanella baltica OS223]
Length = 308
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 21/166 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
I F LV DL ++P+++++ +L L+ + G
Sbjct: 152 QFVFASILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++G ++ + ++
Sbjct: 212 LSLWSIFWLFKILTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGAVVGITMIV 270
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ + N IP+G I+ G I+
Sbjct: 271 SKRLK---------------QGNPIPFGPYIAAAGWIALLFGQQIV 301
>gi|269961263|ref|ZP_06175630.1| leader peptidase PilD [Vibrio harveyi 1DA3]
gi|269834024|gb|EEZ88116.1| leader peptidase PilD [Vibrio harveyi 1DA3]
Length = 289
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ + F L+ A DL + ++P+++++ ++ + + A + + + + + G
Sbjct: 129 FTVALVFFTFVLIAATFIDLDTMLLPDQLTLPLMWAGIALALSGISPVSLQDSIIGAMAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G I + L
Sbjct: 189 YLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGVIFGLIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G +S +
Sbjct: 248 RLQKQG---------------IEKAFPFGPYLAIAGWVSLIWGHQI 278
>gi|91776577|ref|YP_546333.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Methylobacillus flagellatus KT]
gi|91710564|gb|ABE50492.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Methylobacillus flagellatus KT]
Length = 288
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 21/170 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + F L+ DL + ++P+ +++ +L + LL G D + G +
Sbjct: 134 AVASWLIIFALIALTFIDLDTHLLPDDITLPLLWAGLLFNLDHGFTDISSAVIGAAAGYL 193
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
V + F MG GD KLL + WFGW + + ++ G I+ + ++ +
Sbjct: 194 VLWSVYWLFKLITGKEGMGYGDFKLLAALGAWFGWQ-LLPAVILLSSVAGSIIGIGLIVL 252
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G +++GG+ + +G
Sbjct: 253 TK---------------HGRETPIPFGPYLALGGIAALFCGEQLSQLYLG 287
>gi|153002447|ref|YP_001368128.1| prepilin peptidase [Shewanella baltica OS185]
gi|151367065|gb|ABS10065.1| Prepilin peptidase [Shewanella baltica OS185]
Length = 308
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 21/166 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
I F LV DL ++P+++++ +L L+ + G
Sbjct: 152 QFVFASILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++G ++ + ++
Sbjct: 212 LSLWSIFWLFKILTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGAVVGITMIV 270
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ + N IP+G I+ G I+
Sbjct: 271 SKRLK---------------QGNPIPFGPYIAAAGWIALLFGQQIV 301
>gi|304412465|ref|ZP_07394071.1| Prepilin peptidase [Shewanella baltica OS183]
gi|307307124|ref|ZP_07586862.1| Prepilin peptidase [Shewanella baltica BA175]
gi|304349107|gb|EFM13519.1| Prepilin peptidase [Shewanella baltica OS183]
gi|306910363|gb|EFN40794.1| Prepilin peptidase [Shewanella baltica BA175]
Length = 308
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIV 68
I F LV DL ++P+++++ +L L+ + G +
Sbjct: 154 VFASILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIVGAAAGYLS 213
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F F MG GD KLL W GW + +++G ++ + ++ +
Sbjct: 214 LWSIFWLFKILTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGAVVGITMIVSK 272
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ N IP+G I+ G I+
Sbjct: 273 RLK---------------QGNPIPFGPYIAAAGWIALLFGQQIV 301
>gi|209696040|ref|YP_002263970.1| type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD)
(leader peptidase PilD) [Aliivibrio salmonicida LFI1238]
gi|208009993|emb|CAQ80316.1| type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD)
(leader peptidase PilD) [Aliivibrio salmonicida LFI1238]
Length = 295
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ ++ L+ D+ + ++P+++++ +L + L + + + + G
Sbjct: 133 FAIAAVLFTLTLIALTFIDIDTMLLPDQITLPLLWTGLYLSLVGWSSVSLMDSVIGAMAG 192
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F MG GD KLL + W GW + +I+G I+ + +L
Sbjct: 193 YLILWSIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPLIVLLSSIVGAIIGIAML 251
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ IP+G +++ G I
Sbjct: 252 RAQKNGYD---------------KAIPFGPYLAIAGWICLLWG 279
>gi|126176111|ref|YP_001052260.1| prepilin peptidase [Shewanella baltica OS155]
gi|125999316|gb|ABN63391.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella baltica OS155]
Length = 304
Score = 94.5 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 21/166 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
I F LV DL ++P+++++ +L L+ + G
Sbjct: 148 QFVFASILTFVLVALTAIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIMGAAAGY 207
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++G ++ + ++
Sbjct: 208 LSLWSIFWLFKILTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGAVVGITMIV 266
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ + N IP+G I+ G I+
Sbjct: 267 SKRLK---------------QGNPIPFGPYIAAAGWIALLFGQQIV 297
>gi|192361521|ref|YP_001983191.1| type IV pilus prepilin peptidase PilD [Cellvibrio japonicus
Ueda107]
gi|190687686|gb|ACE85364.1| type IV pilus prepilin peptidase PilD [Cellvibrio japonicus
Ueda107]
Length = 308
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 67/170 (39%), Gaps = 21/170 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIV 68
L+ + L+ + DL + ++P+ +++ +L L+ F L D + G +
Sbjct: 151 LAALVLTWALIALTMIDLDTYLLPDDITLPLLWLGLIVNSFGLFTDLASAFWGAVAGYLT 210
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ F MG GD KLL + W GW + +++G ++ + ++ VR
Sbjct: 211 LWSVYQLFKLLTGKEGMGYGDFKLLAALGAWMGWQ-MLPQIILLSSLVGAVIGITLIIVR 269
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+IP IP+G +++ G I++ + +
Sbjct: 270 GRDRNIP---------------IPFGPYLAIAGWIAFLWGDRINATYLKI 304
>gi|323493654|ref|ZP_08098775.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
brasiliensis LMG 20546]
gi|323312177|gb|EGA65320.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
brasiliensis LMG 20546]
Length = 289
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ + F L+ A DL + ++P+++++ + + + + + + + + + G
Sbjct: 129 FTIALIFFTFVLIAATFIDLDTMLLPDQLTLPLTWAGIALSLLQISPVSLQDSVIGAIAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW + +++G + + L
Sbjct: 189 YLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQY-LPMVILLSSLVGLVFGLIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ P+G +++ G IS
Sbjct: 248 RLKQQGID---------------KAFPFGPYLAIAGWISMIWG 275
>gi|269966288|ref|ZP_06180376.1| leader peptidase PilD [Vibrio alginolyticus 40B]
gi|269829085|gb|EEZ83331.1| leader peptidase PilD [Vibrio alginolyticus 40B]
Length = 289
Score = 94.2 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ L F L+ A DL + ++P+++++ + + ++ A + + + + + G
Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWTGIVLALVEISPVTLQDSVIGAIAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G + + L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGIVFGIIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G IS
Sbjct: 248 RLQKQG---------------IEKAFPFGPYLAIAGWISLIWGDQI 278
>gi|190575613|ref|YP_001973458.1| putative type 4 prepilin-like proteins leader peptide processing
enzyme [Stenotrophomonas maltophilia K279a]
gi|190013535|emb|CAQ47170.1| putative type 4 prepilin-like proteins leader peptide processing
enzyme [Stenotrophomonas maltophilia K279a]
Length = 287
Score = 93.8 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ L+ + DL + ++P+++++ ++ L+ + L M + + VG +
Sbjct: 133 IVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGSIDNLYMPAKPALVGAAVGYLSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + I S+++ +
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGVLPIILLSSVLGAIIGSIWLYSRGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G +++ G + + M +S
Sbjct: 251 --------------DRATPIPFGPYLAIAGWLYFMWGAPLVEQYMVMS 284
>gi|299771790|ref|YP_003733816.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Acinetobacter sp. DR1]
gi|298701878|gb|ADI92443.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Acinetobacter sp. DR1]
Length = 286
Score = 93.8 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + + L+ + L+ D + ++P+R ++ + L F +
Sbjct: 126 MMFGPTIQMLLGLVLTWVLITLTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAI 185
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G + ++LG I
Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAI 244
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +L +R +G I++ G +++ +G
Sbjct: 245 IGIILLKLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|37680965|ref|NP_935574.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio vulnificus YJ016]
gi|37199715|dbj|BAC95545.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio vulnificus YJ016]
Length = 306
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 147 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 206
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 207 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 265
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 266 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 303
>gi|262393316|ref|YP_003285170.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
sp. Ex25]
gi|262336910|gb|ACY50705.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
sp. Ex25]
Length = 289
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ L F L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWAGIALALVEISPVTLQDSVIGAIAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G + + L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGIVFGIIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G IS
Sbjct: 248 RLQKQG---------------IEKAFPFGPYLAIAGWISLIWGDQI 278
>gi|170724673|ref|YP_001758699.1| prepilin peptidase [Shewanella woodyi ATCC 51908]
gi|169810020|gb|ACA84604.1| Prepilin peptidase [Shewanella woodyi ATCC 51908]
Length = 303
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ A+ F L+ DL ++P+++++ +L L+ + + G
Sbjct: 146 IEFALATTLTFGLIVLTGIDLDEMLLPDQITLPLLWLGLIINLNGTFVSPTDAIIGAAAG 205
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F F MG GD KLL W GW + +++G I+ + ++
Sbjct: 206 YMSLWSVFWGFKLLTGKEGMGYGDFKLLAVFGAWLGWQ-LLPIIVLLSSLVGAIIGIGLI 264
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I + N IP+G I++ G I+ +
Sbjct: 265 VTKKINHT---------------NPIPFGPYIAIAGWIAMIWGSSINAWYLST 302
>gi|163803452|ref|ZP_02197325.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio sp. AND4]
gi|159172753|gb|EDP57601.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio sp. AND4]
Length = 289
Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
F+ + L+ A DL + ++P+++++ ++ + A + + + + + G
Sbjct: 129 FTVALIFFTLLLIAATFIDLDTMLLPDQLTLPLMWGGITLALIGVSPISLQDSVIGAMTG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G I + L
Sbjct: 189 YLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGVIFGLIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G +S +
Sbjct: 248 RLQKQG---------------IEKAFPFGPYLAIAGWVSLIWGHQI 278
>gi|160877166|ref|YP_001556482.1| prepilin peptidase [Shewanella baltica OS195]
gi|160862688|gb|ABX51222.1| Prepilin peptidase [Shewanella baltica OS195]
gi|315269370|gb|ADT96223.1| Prepilin peptidase [Shewanella baltica OS678]
Length = 304
Score = 93.0 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 21/166 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
I F LV DL ++P+++++ +L L+ + + G
Sbjct: 148 QFVFASILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHIFASPTDAIIGAAAGY 207
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++ ++ + ++
Sbjct: 208 LSLWSIFWLFKILTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVAAVVGITMIV 266
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ + N IP+G I+ G I+
Sbjct: 267 SKRLK---------------QGNPIPFGPYIAAAGWIALLFGQQIV 297
>gi|167031694|ref|YP_001666925.1| prepilin peptidase [Pseudomonas putida GB-1]
gi|166858182|gb|ABY96589.1| Prepilin peptidase [Pseudomonas putida GB-1]
Length = 288
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
V + + L +CL+ +L D ++P+ + + ML L+ + G
Sbjct: 129 VEALLALPLTWCLLALSLIDADHQLLPDALVLPMLWLGLIVNAFGIYAPLTDALWGAVAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL+ W GW L+ L +++G ++ + +L
Sbjct: 189 YLSLWTVYWLFKLITGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+R M IP+G +++ G I+ + M L
Sbjct: 248 RLRR---------------HAMGTAIPFGPYLAIAGWIAVLWGDEMYASYMQL 285
>gi|157960240|ref|YP_001500274.1| prepilin peptidase [Shewanella pealeana ATCC 700345]
gi|157845240|gb|ABV85739.1| Prepilin peptidase [Shewanella pealeana ATCC 700345]
Length = 303
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 21/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ A+ + FCL+ DL ++P+++++ +L L+ + G
Sbjct: 146 LEFALTALLTFCLIALTGIDLDEMLLPDQITLPLLWLGLIINLGGTFATTSDALIGAAAG 205
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F F + MG GD KLL WFGW + +++G ++ + ++
Sbjct: 206 YLSLWCVFWLFKLLTGKDGMGYGDFKLLAVFGAWFGWQ-VLPLVILLSSLVGAVVGIALI 264
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ N IP+G I+ G I+
Sbjct: 265 VFKK---------------LNHGNPIPFGPYIAAAGWIAMIWGE 293
>gi|54310291|ref|YP_131311.1| putative leader peptidase PilD [Photobacterium profundum SS9]
gi|46914732|emb|CAG21509.1| putative leader peptidase PilD [Photobacterium profundum SS9]
Length = 299
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 66/171 (38%), Gaps = 22/171 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELI 58
+ +++ + F L+ D+ + ++P+++++ ++ + + A + + +
Sbjct: 132 LMLPSSLWAVAVIFFSFALIALTFIDIDTMLLPDQITLPLMWAGIAAALVGLSPVSLQDA 191
Query: 59 ALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
+ +VG + F F MG GD KLL + W GW S + +++G
Sbjct: 192 IIGAMVGYLSLWSLFWSFKLITGKEGMGYGDFKLLAALGAWLGWQ-SLPFVVLLSSLVGA 250
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ + +L V+ + +G ++M G IS
Sbjct: 251 VCGIILLRVQRS---------------DSQTPFSFGPYLAMAGWISILWGD 286
>gi|156975736|ref|YP_001446643.1| Type II secretory pathway, prepilin signal peptidase PulO [Vibrio
harveyi ATCC BAA-1116]
gi|156527330|gb|ABU72416.1| hypothetical protein VIBHAR_03471 [Vibrio harveyi ATCC BAA-1116]
Length = 289
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ + F L+ A DL + ++P+++++ ++ + + A + + + + + G
Sbjct: 129 FTVALVFFTFVLIAATFIDLDTMLLPDQLTLPLMWAGIALALAGISPVSLQDSIIGAMAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G I + L
Sbjct: 189 YLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGVIFGLIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G +S +
Sbjct: 248 RLQKQG---------------IEKAFPFGPYLAIAGWVSLIWGHQI 278
>gi|285017459|ref|YP_003375170.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
albilineans GPE PC73]
gi|283472677|emb|CBA15182.1| probable type II secretory pathway prepilin signal peptidase
protein [Xanthomonas albilineans]
Length = 287
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 21/168 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL + ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVALSGIDLRTRLLPDQLTLPLMWLGLIGSMDNLYMPAKPALLGAAVGYVSLWS 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S ++
Sbjct: 193 VWWLFKQITGKEGMGHGDFKLLAAIGAWCGLKGILPVILISSLVGAILGSAWLAAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G +++ G I++ + S
Sbjct: 251 --------------DRATPIPFGPYLAIAGWITFFWGRQIVDTYLHWS 284
>gi|153838706|ref|ZP_01991373.1| bacterial Peptidase A24 N- domain family [Vibrio parahaemolyticus
AQ3810]
gi|149747866|gb|EDM58744.1| bacterial Peptidase A24 N- domain family [Vibrio parahaemolyticus
AQ3810]
Length = 289
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ + F L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 129 FTVALIFFTFVLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G I + L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGVIFGLVQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G +S
Sbjct: 248 RLQKQG---------------IEKAFPFGPYLAIAGWVSLIWGDQI 278
>gi|260556306|ref|ZP_05828525.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii ATCC
19606]
gi|260410361|gb|EEX03660.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii ATCC
19606]
Length = 286
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + L+ + L+ D + ++P+R ++ + L F +
Sbjct: 126 MMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAI 185
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G + ++LG I
Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAI 244
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +L +R +G I++ G +++ +G
Sbjct: 245 IGIILLKLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|328474167|gb|EGF44972.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio parahaemolyticus 10329]
Length = 289
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ + F L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 129 FTVALIFFTFVLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G I + L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGVIFGLVQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G S
Sbjct: 248 RLQKQG---------------IERAFPFGPYLAIAGWASLIWGDQI 278
>gi|28899300|ref|NP_798905.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio parahaemolyticus RIMD 2210633]
gi|260363756|ref|ZP_05776531.1| bacterial peptidase A24 N-terminal domain protein [Vibrio
parahaemolyticus K5030]
gi|260879008|ref|ZP_05891363.1| bacterial peptidase A24 N-terminal domain protein [Vibrio
parahaemolyticus AN-5034]
gi|28807524|dbj|BAC60789.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio parahaemolyticus RIMD 2210633]
gi|308089548|gb|EFO39243.1| bacterial peptidase A24 N-terminal domain protein [Vibrio
parahaemolyticus AN-5034]
gi|308111141|gb|EFO48681.1| bacterial peptidase A24 N-terminal domain protein [Vibrio
parahaemolyticus K5030]
Length = 289
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ + F L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 129 FTVALIFFTFFLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G I + L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGVIFGLVQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G +S
Sbjct: 248 RLQKQG---------------IERAFPFGPYLAIAGWVSLIWGDQI 278
>gi|261250240|ref|ZP_05942816.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
orientalis CIP 102891]
gi|260939356|gb|EEX95342.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
orientalis CIP 102891]
Length = 289
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 62/165 (37%), Gaps = 22/165 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
+ + F L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 AICLIFFTFVLISATFIDLDTMLLPDQLTLPLTWTGIAIALIDISPVSLQDAVIGAIAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + + F MG GD KLL + W GW + +++G + + L
Sbjct: 190 LALWVVYWAFKLTTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSLVGLVFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ P+G +++ G IS L
Sbjct: 249 LKRQGID---------------KAFPFGPYLAIAGWISLMWGDLI 278
>gi|260220288|emb|CBA27676.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Curvibacter putative symbiont of Hydra magnipapillata]
Length = 258
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 22/171 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+ + CLV AL D + ++P+ +++ ++ L+ A + + G +
Sbjct: 104 IAWCVFSACLVTLALIDWDTTLLPDDITLPLVWLGLVAAALQWTPVGLSTALWGAVAGYL 163
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KL + WFGW L I +
Sbjct: 164 SLWSIYWLFKLVTGKEGMGYGDFKLFAALGAWFGWPVLIPMILMASVIGAIVGIAM---- 219
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
IP+G ++ G + +L+ L
Sbjct: 220 ------------KFTSGLREGGYIPFGPFLAGAGFTALILGPQTLRSLVNL 258
>gi|254525344|ref|ZP_05137399.1| type II secretory pathway prepilin signal peptidase
[Stenotrophomonas sp. SKA14]
gi|219722935|gb|EED41460.1| type II secretory pathway prepilin signal peptidase
[Stenotrophomonas sp. SKA14]
Length = 287
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ L+ + DL + ++P+++++ ++ L+ + L M + + +G +
Sbjct: 133 IVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGSIDNLYMPAKPALIGAALGYLSLWA 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + I S+++ +
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILLSSVLGAIIGSIWLYSRGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G +++ G + + + LS
Sbjct: 251 --------------DRATPIPFGPYLAIAGWLYFMWGGPLVEQYLVLS 284
>gi|222084467|ref|YP_002542996.1| prepilin peptidase protein [Agrobacterium radiobacter K84]
gi|221721915|gb|ACM25071.1| prepilin peptidase protein [Agrobacterium radiobacter K84]
Length = 170
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 113/169 (66%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ +A LI P CL AA+SDL + IPNRVS+++LG+F++ A +G+ I +H+
Sbjct: 1 MLEAATLLIFPLCLSVAAISDLLTMTIPNRVSLILLGAFIVLAPFVGLTLPEIGMHVAGA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
IVF CF FA N+MGGGD KLL ++A+WFG+ PS L+FL +VA +GG +++ IL +R
Sbjct: 61 AIVFCACFALFALNVMGGGDAKLLAASALWFGFDPSLLAFLVYVAFIGGAVTIAILMIRS 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
++ I G+ +P S L+ KIPYGIAI++GG +++P S L A +
Sbjct: 121 QSSAIMAMGLPLPNSLLIAKKIPYGIAIAIGGFLAFPSSPLVVAAASHI 169
>gi|90411987|ref|ZP_01219994.1| putative leader peptidase PilD [Photobacterium profundum 3TCK]
gi|90326965|gb|EAS43344.1| putative leader peptidase PilD [Photobacterium profundum 3TCK]
Length = 299
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 22/168 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
+++ + F L+ D+ + ++P+++++ ++ + + A + + + + +V
Sbjct: 138 LWAVAVIFFSFALIALTFIDIDTMLLPDQITLPLMWAGIAAALVGLSPVSLQDAIIGAMV 197
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + F F MG GD KLL + W GW S + +++G + + +
Sbjct: 198 GYLSLWSLFWCFKLITGKEGMGYGDFKLLAALGAWLGWQ-SLPFVVLLSSLVGAVCGIIL 256
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
L V+ + +G ++M G IS
Sbjct: 257 LRVQRS---------------DSQTPFSFGPYLAMAGWISILWGDQII 289
>gi|331007272|ref|ZP_08330475.1| Leader peptidase (Prepilin peptidase) [gamma proteobacterium
IMCC1989]
gi|330418921|gb|EGG93384.1| Leader peptidase (Prepilin peptidase) [gamma proteobacterium
IMCC1989]
Length = 299
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 21/168 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIV 68
V L+ + L+ + D+ + ++P+ +++ +L L+ + E L + G +
Sbjct: 141 LVALVLLWSLICLTMIDIDTQLLPDSITLPLLWLGLIANYFGLYTSLEDALLGAIFGYLS 200
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F F MG GD KLL + W GW I+ +
Sbjct: 201 LWSVFWLFKIITGKEGMGYGDFKLLAALGAWMGWQ----------------FLPLIILLS 244
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ + + IP+G +++ G I++
Sbjct: 245 SLVGAVIGIAGIIILGRNKNIPIPFGPYLAIAGWIAFIWGERIIDFYF 292
>gi|327479618|gb|AEA82928.1| type 4 prepilin peptidase PilD [Pseudomonas stutzeri DSM 4166]
Length = 289
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ ++ D+ ++P+ + + +L L+ F L E + G
Sbjct: 131 QAGAMLLLTWGLLAMSMIDVDHQLLPDSLVLPLLWVGLIANSFALFASLEDALWGAIAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL W GW L+ L + + S+ +
Sbjct: 191 LSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGAVLGSILLRV 250
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
R IP+G +++ G I+ + + +
Sbjct: 251 QR----------------AESSTPIPFGPYLAIAGWIALLWGDRITESYLQFA 287
>gi|74318386|ref|YP_316126.1| type 4 prepilin peptidase 1 [Thiobacillus denitrificans ATCC 25259]
gi|74057881|gb|AAZ98321.1| prepilin cysteine protease (C20) PilD [Thiobacillus denitrificans
ATCC 25259]
Length = 283
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
V +A L+ + L+ A DL + ++P+ +++ +L + LL G
Sbjct: 126 VQAAGALLLVWMLIALAFIDLDTTLLPDSLTLPLLWAGLLINLGGHFASLPDAVAGAAAG 185
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + F MG GD KLL + W GW ++ L + + I+
Sbjct: 186 YLVLWSVYWMFKLVTGKEGMGYGDFKLLAAIGAWLGWQLLPVTLLLASVVGAVVGITMIV 245
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
V+ + IP+G ++ GGL++ A +
Sbjct: 246 AVK----------------HDRRVPIPFGPYLAGGGLVALFFGADLTQAYLA 281
>gi|217969594|ref|YP_002354828.1| prepilin peptidase [Thauera sp. MZ1T]
gi|217506921|gb|ACK53932.1| Prepilin peptidase [Thauera sp. MZ1T]
Length = 283
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 21/171 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLI 67
+ L+ + +V DL + ++P+ +++ +L L + + G +
Sbjct: 128 ALGALLFVWAMVALTFIDLDTQLLPDDITLPLLWLGLAFNLGTTFAELPDAVIGAMAGYL 187
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F F MG GD KLL + W GW L+ L + + + I+
Sbjct: 188 ALWAVFWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLTILLSSLVGAVVGILLIVVA 247
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R IP+G ++ GLI+ +GL
Sbjct: 248 R----------------HGRNVPIPFGPYLAAAGLIALFWGERITERYLGL 282
>gi|239500938|ref|ZP_04660248.1| Type II secretory pathway, prepilin signal peptidase PulO
[Acinetobacter baumannii AB900]
Length = 286
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + L+ + L+ D + ++P+R ++ + L F +
Sbjct: 126 MVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAI 185
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G + ++LG I
Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAI 244
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +L +R +G I++ G +++ +G
Sbjct: 245 IGIILLKLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|148979563|ref|ZP_01815594.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrionales bacterium SWAT-3]
gi|145961747|gb|EDK27043.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrionales bacterium SWAT-3]
Length = 289
Score = 91.1 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 22/164 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
+++ + F L+ A DL + ++P+++++ ++ S + A + + + +
Sbjct: 128 LYAIALIFFTFALITATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVVGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G + +
Sbjct: 188 GYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQH-LPMIILLSSLVGLVFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
L ++ P+G +++ G +S
Sbjct: 247 LRLKQQGID---------------KAFPFGPYLAIAGWVSLMWG 275
>gi|260775492|ref|ZP_05884389.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
coralliilyticus ATCC BAA-450]
gi|260608673|gb|EEX34838.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
coralliilyticus ATCC BAA-450]
Length = 289
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 22/159 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ L F L+ A D + ++P++++ ++ S + A + + + + G
Sbjct: 129 FAIALLFFTFVLIAATFIDFDTMLLPDQLTFPLIWSGIALALLDFSPVSLQDSVIGAMAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW + +++G + + L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQY-LPVIVLLSSLVGLVFGIIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
++ P+G +++ G +S
Sbjct: 248 RLQKQGID---------------KAFPFGPYLAIAGWVS 271
>gi|150398539|ref|YP_001329006.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
gi|150030054|gb|ABR62171.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
Length = 170
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 80/170 (47%), Positives = 114/170 (67%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M +A+F++ PFCL FAA SDLF+ IPNR+S ++L SF++ + L G+D LH+
Sbjct: 1 MTIAAIFVVFPFCLAFAAFSDLFTMTIPNRISAIVLVSFVVISPLAGLDASKACLHVAAA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++VF CFC FA N+MGGGD KLLT++A+WFG+ S + FL +V+ GG+L++ +L +R
Sbjct: 61 VLVFGACFCLFAVNVMGGGDAKLLTASAIWFGFEASLIDFLLYVSAFGGLLTIAVLLLRS 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
N I + VP+ L KIPYGIAI++GG +YP S L K+AL S
Sbjct: 121 QENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMKLALTQFS 170
>gi|84393981|ref|ZP_00992720.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio splendidus 12B01]
gi|84375375|gb|EAP92283.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio splendidus 12B01]
Length = 289
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 22/162 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
+ + F L+ A DL + ++P+++++ ++ S + A + + + + G
Sbjct: 130 AIALIFFTFALITATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G + + L
Sbjct: 190 LALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQH-LPMIILLSSLVGLVFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ P+G +++ G +S
Sbjct: 249 LKQQGID---------------KAFPFGPYLAIAGWVSLMWG 275
>gi|254282444|ref|ZP_04957412.1| type IV fimbrial biogenesis protein,prepilin cysteine protease
(C20) PilD [gamma proteobacterium NOR51-B]
gi|219678647|gb|EED34996.1| type IV fimbrial biogenesis protein,prepilin cysteine protease
(C20) PilD [gamma proteobacterium NOR51-B]
Length = 286
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 21/165 (12%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFC 74
+ + D+ + ++P+ +++ +L L+ E + + G ++ +
Sbjct: 135 IWASIALTGIDIDTRLLPDSITLPVLWLGLVFNLFGVFTSLEAAVMGAMAGYLILWSVYW 194
Query: 75 FFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F MG GD KLL + WFGW L + + I + ++ R +
Sbjct: 195 LFKLVTGKEGMGYGDFKLLAAFGAWFGWQSLPLIIVLSSFVGAVIGILLVMLKRSGRDI- 253
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+P+G ++ GL+ + S
Sbjct: 254 ---------------PMPFGPYLAGAGLLFLFYGEQLTARYLEFS 283
>gi|218710511|ref|YP_002418132.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio splendidus LGP32]
gi|218323530|emb|CAV19721.1| Type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio splendidus LGP32]
Length = 289
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 22/162 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
+ + F L+ A DL + ++P+++++ ++ S + A + + + + G
Sbjct: 130 AIALIFFTFALIAATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVVGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G + + L
Sbjct: 190 LALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQH-LPMIILLSSLVGLVFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ P+G +++ G +S
Sbjct: 249 LKQQGID---------------KAFPFGPYLAIAGWVSLMWG 275
>gi|114564937|ref|YP_752451.1| prepilin peptidase [Shewanella frigidimarina NCIMB 400]
gi|114336230|gb|ABI73612.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella frigidimarina NCIMB 400]
Length = 308
Score = 90.7 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 21/163 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
I F LV DL ++P+++++ +L L+ E + G
Sbjct: 152 QFVYASILTFVLVALTGIDLDEMLLPDQLTLPILWLGLIINLKGIYTSPEDAIIGAAAGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L L + G ++ + ++
Sbjct: 212 LSLWSVFWLFKLVTGKEGMGYGDFKLLAVFGAWLGWQMLPLIILLSSLV-GAVVGITMIM 270
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ N IP+G I+ G I+ +
Sbjct: 271 AKQ---------------LNKGNPIPFGPYIAAAGWIALVWGH 298
>gi|253995891|ref|YP_003047955.1| Prepilin peptidase [Methylotenera mobilis JLW8]
gi|253982570|gb|ACT47428.1| Prepilin peptidase [Methylotenera mobilis JLW8]
Length = 289
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 21/161 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + I L+ D + ++P+ +++ +L +L G D + + + G +
Sbjct: 136 TLMAWIFALALITLTFIDFDTQLLPDDITLPLLWLGILFNLNSGFTDLKSSVIGAMAGYM 195
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
V + F MG GD KLL + WFGW + + + LG I+ + ++ +
Sbjct: 196 VLWSVYWLFKLIRGKEGMGYGDFKLLAAIGAWFGWQ-LLPAVVLLSSTLGAIIGIALIVL 254
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+P +P+G +++GG+ +
Sbjct: 255 TKRGKEVP---------------MPFGPFLAIGGIAALFFG 280
>gi|149376816|ref|ZP_01894573.1| Type II secretory pathway, prepilin signal peptidase PulO and
related peptidase [Marinobacter algicola DG893]
gi|149358937|gb|EDM47404.1| Type II secretory pathway, prepilin signal peptidase PulO and
related peptidase [Marinobacter algicola DG893]
Length = 291
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 59/156 (37%), Gaps = 21/156 (13%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF 78
+ + D + ++P+ +++ ++ L+ + + D+ + G + + F
Sbjct: 145 IALTVIDFDTQLLPDSMTLPLMWLGLILNYFGVLTDFSSAFWGAVAGYLSLWSVYWLFKL 204
Query: 79 ----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
MG GD KLL + W GW + + +++G ++ + ++ R
Sbjct: 205 VTGKEGMGHGDFKLLAALGAWLGWE-LLPAVILLSSLVGAVVGISLMVFRK--------- 254
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ IP+G ++ GL+ + A
Sbjct: 255 ------HGREVPIPFGPYLAAAGLLCLWFGAEIQAA 284
>gi|311695302|gb|ADP98175.1| type IV pilus prepilin peptidase PilD [marine bacterium HP15]
Length = 291
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 57/142 (40%), Gaps = 21/142 (14%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF--- 78
+ D + ++P+ +++ ++ L+ + + D+ +VG + + F
Sbjct: 148 TVIDFDTQLLPDSITLPLMWLGLVLNYFGVLTDFNSAFWGAVVGYLALWSVYWLFKLVTG 207
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GD KLL + W GW + + +++G ++ + ++ +
Sbjct: 208 KEGMGHGDFKLLAALGAWLGWQ-LLPAVILLSSVVGAVVGIGLMVFKQ------------ 254
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
+ IP+G ++ GL+
Sbjct: 255 ---HGREVPIPFGPYLATAGLL 273
>gi|332305386|ref|YP_004433237.1| Prepilin peptidase [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332172715|gb|AEE21969.1| Prepilin peptidase [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 298
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 21/168 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLI 67
+ ++ + LV D+ + ++P+++++ +L LL + + + + VG +
Sbjct: 141 ALAGVVMTWILVALIFIDIDTMLLPDQLTLPLLWMGLLFSIVNPAVTSADSIIGATVGYL 200
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + W GW + +++G ++ + +L+
Sbjct: 201 SLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWMGWQY-LAIVVLMSSLVGAVIGISVLSF 259
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ IP+G +++ G ++
Sbjct: 260 QGK---------------DKGQAIPFGPYLAIAGWLTLLYGDWISTKY 292
>gi|50083622|ref|YP_045132.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Acinetobacter sp. ADP1]
gi|49529598|emb|CAG67310.1| type 4 prepilin-like proteins leader peptide processing enzyme
(Protein secretion protein XCPA)[Includes: Leader
peptidase (Prepilin peptidase); N-methyltransferase ]
[Acinetobacter sp. ADP1]
Length = 286
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 23/175 (13%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHL 62
+ L+ + L+ D + ++P+R ++ + G L F + +
Sbjct: 129 GATLHMLFGLVLTWILIALTFIDFDTQLLPDRFTLTLAGLGLAVNSFTIYVSPTQAIWGY 188
Query: 63 LVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+VG + I + F MG GD KLL + W G + + +G I+ +
Sbjct: 189 IVGFLCLWIVYYIFKLITKKEGMGYGDFKLLAALGAWMGP-MMLPLIVLLSSCVGAIIGI 247
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+L R +G I++ G I++ +G
Sbjct: 248 ILLRKRQ-----------------ENQPFAFGPYIAIAGWIAFLWGDQIMKVYLG 285
>gi|323137423|ref|ZP_08072501.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242]
gi|322397410|gb|EFX99933.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242]
Length = 168
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 84/162 (51%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + ++ P +VFAA SDLF+ IPNRVS +++ +L A L + + LH+ G
Sbjct: 1 MIEALALIVFPTMMVFAAFSDLFTMTIPNRVSALLVLVYLALAVYLPIPLQTFGLHVSSG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L + + F F F +GGGD KL ++TA+W GW L G + + I R
Sbjct: 61 LAMLALTFVLFQFGWVGGGDAKLASATALWLGWEHLLDYGLVASIAGGVLTVIIIELRRH 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ F+ + N +PYGIA+++ GL+ YP + LF
Sbjct: 121 DLPRRVLSVAFIARLAEKTNGVPYGIALAVAGLLVYPQTGLF 162
>gi|169634559|ref|YP_001708295.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Acinetobacter baumannii SDF]
gi|169153351|emb|CAP02468.1| type 4 prepilin-like proteins leader peptide processing enzyme
(Protein secretion protein XCPA)[Includes: Leader
peptidase (Prepilin peptidase); N-methyltransferase ]
[Acinetobacter baumannii]
Length = 286
Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + L+ + L+ D + ++P+R ++ + L F +
Sbjct: 126 MVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAI 185
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G + ++LG I
Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAI 244
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +L +R +G I++ G +++ +G
Sbjct: 245 IGIILLKLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|86148308|ref|ZP_01066603.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio sp. MED222]
gi|85833933|gb|EAQ52096.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio sp. MED222]
Length = 289
Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 22/162 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
+ + F L+ A DL + ++P+++++ ++ S + A + + + + G
Sbjct: 130 AIALIFFTFALIAATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVVGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G + + L
Sbjct: 190 LALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQH-LPMIILLSSLVGLVFGLTQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ P+G +++ G +S
Sbjct: 249 LKQQGID---------------KAFPFGPYLAIAGWVSLMWG 275
>gi|78048911|ref|YP_365086.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325928499|ref|ZP_08189690.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
perforans 91-118]
gi|78037341|emb|CAJ25086.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325541216|gb|EGD12767.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
perforans 91-118]
Length = 287
Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S++++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSIWLVAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|126640409|ref|YP_001083393.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Acinetobacter baumannii ATCC 17978]
Length = 247
Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + L+ + L+ D + ++P+R ++ + L F +
Sbjct: 87 MVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAI 146
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G + ++LG I
Sbjct: 147 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAI 205
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +L +R +G I++ G +++ +G
Sbjct: 206 IGIILLKLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 246
>gi|294624335|ref|ZP_06703035.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|292601367|gb|EFF45404.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
Length = 287
Score = 90.3 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S++++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSIWLVAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|169797414|ref|YP_001715207.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Acinetobacter baumannii AYE]
gi|213155772|ref|YP_002317817.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii
AB0057]
gi|215484852|ref|YP_002327091.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Acinetobacter baumannii AB307-0294]
gi|301345145|ref|ZP_07225886.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Acinetobacter baumannii AB056]
gi|301510694|ref|ZP_07235931.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Acinetobacter baumannii AB058]
gi|301594954|ref|ZP_07239962.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Acinetobacter baumannii AB059]
gi|332854394|ref|ZP_08435346.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Acinetobacter baumannii 6013150]
gi|332867625|ref|ZP_08437757.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Acinetobacter baumannii 6013113]
gi|169150341|emb|CAM88238.1| type 4 prepilin-like proteins leader peptide processing enzyme
(Protein secretion protein XCPA)[Includes: Leader
peptidase (Prepilin peptidase); N-methyltransferase ]
[Acinetobacter baumannii AYE]
gi|213054932|gb|ACJ39834.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii
AB0057]
gi|213987959|gb|ACJ58258.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Acinetobacter baumannii AB307-0294]
gi|332728070|gb|EGJ59461.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Acinetobacter baumannii 6013150]
gi|332733819|gb|EGJ64966.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Acinetobacter baumannii 6013113]
Length = 286
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 23/172 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
+ L+ + L+ D + ++P+R ++ + L F + L+G
Sbjct: 132 IQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIG 191
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ I + F MG GD KLL + W G + ++LG I+ + +L
Sbjct: 192 FLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAIIGIILL 250
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+R +G I++ G +++ +G
Sbjct: 251 KLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|260550515|ref|ZP_05824725.1| type IV pilus prepilin peptidase PilD [Acinetobacter sp. RUH2624]
gi|260406430|gb|EEW99912.1| type IV pilus prepilin peptidase PilD [Acinetobacter sp. RUH2624]
Length = 286
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + L+ + L+ D + ++P+R ++ + L F +
Sbjct: 126 MVFGPTIQMLFGLVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAI 185
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G + ++LG I
Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAI 244
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +L +R +G I++ G +++ +G
Sbjct: 245 IGIILLKLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|21243969|ref|NP_643551.1| type IV pre-pilin leader peptidase [Xanthomonas axonopodis pv.
citri str. 306]
gi|294666987|ref|ZP_06732216.1| type IV pre-pilin leader peptidase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|21109582|gb|AAM38087.1| type IV pre-pilin leader peptidase [Xanthomonas axonopodis pv.
citri str. 306]
gi|292603276|gb|EFF46698.1| type IV pre-pilin leader peptidase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 287
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S++++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSIWLVAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|262170628|ref|ZP_06038306.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
mimicus MB-451]
gi|261891704|gb|EEY37690.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
mimicus MB-451]
Length = 291
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 22/164 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
F+ L+ + L+ A DL + ++P+++++ +L + A + + +VG
Sbjct: 129 FAVAALLFSYVLIAATFIDLDTMLLPDQLTLPLLWGGIALALFGLSPVPLTDAVIGAMVG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 189 YLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ + P+G +++ G +
Sbjct: 248 RQQKKGIEM---------------AFPFGPYLAIAGWFALLWGD 276
>gi|268589174|gb|ACZ06863.1| type IV pre-pilin leader peptidase [Xanthomonas axonopodis pv.
glycines]
Length = 287
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S++++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSIWLVAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|90407088|ref|ZP_01215277.1| type 4 prepilin peptidase [Psychromonas sp. CNPT3]
gi|90311810|gb|EAS39906.1| type 4 prepilin peptidase [Psychromonas sp. CNPT3]
Length = 290
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLI 67
LI + L+ + D ++P+++++ +L LL + + ++G +
Sbjct: 134 LLFALIFTWVLICLSYIDFDVMLLPDQLTLPLLWVGLLVNLSYSFVSINDAVVGAILGYL 193
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + WFGW + + + G I+ + +L +
Sbjct: 194 SLWSVYWLFKLATGKEGMGYGDFKLLAALGAWFGWQ-ALPLIILLSSFSGAIIGIVLLLL 252
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+G +++ G I L L
Sbjct: 253 SKNK---------------ESKPLPFGPYLAIAGWIYLICGPLLTQYYYAL 288
>gi|193076176|gb|ABO10791.2| type 4 prepilin-like proteins leader peptide processing enzyme
[Acinetobacter baumannii ATCC 17978]
Length = 286
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + L+ + L+ D + ++P+R ++ + L F +
Sbjct: 126 MVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAI 185
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G + ++LG I
Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAI 244
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +L +R +G I++ G +++ +G
Sbjct: 245 IGIILLKLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|114049094|ref|YP_739644.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella sp. MR-7]
gi|113890536|gb|ABI44587.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella sp. MR-7]
Length = 308
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 22/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
+ F L+ DL ++P+++++ +L L+ + G
Sbjct: 152 QFVFAAVLTFVLIALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFTAPTDAVIGAAAGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L L + + I+
Sbjct: 212 LSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPLIILLSSLVGALVGITLIVL 271
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMGL 174
R + N IP+G I+ G I+ + L L
Sbjct: 272 KRNQ----------------LANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL 308
>gi|258625146|ref|ZP_05720063.1| leader peptidase PilD [Vibrio mimicus VM603]
gi|258582597|gb|EEW07429.1| leader peptidase PilD [Vibrio mimicus VM603]
Length = 304
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
F+ L+ + L+ A DL + ++P+++++ +L S + A + + + G
Sbjct: 142 FAVAALLFSYVLIAATFIDLDTMLLPDQLTLPLLWSGIALALFGLSPVSLTDAVIGAMAG 201
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW + +++G + + L
Sbjct: 202 YLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGLLFGLIQL 260
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ P+G +++ G I+
Sbjct: 261 RLQKQGID---------------KAFPFGPYLAIAGWIALLWG 288
>gi|149191272|ref|ZP_01869527.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio shilonii AK1]
gi|148834870|gb|EDL51852.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio shilonii AK1]
Length = 289
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 61/170 (35%), Gaps = 22/170 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
S ++ F L+ A D + ++P+++++ ++ + A + + + + G
Sbjct: 130 SLALIVFTFVLIGATFIDFDTMLLPDQLTLPLMWLGIALALLGISPISLTDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL + W GW + +++G + + L
Sbjct: 190 LCLWSTFWLFKLLTGKEGMGYGDFKLLAALGAWLGWQH-LPLIVLMSSVVGVLFGLVQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
++ + P+G +++ G IS +
Sbjct: 249 MQKKGIDV---------------AFPFGPYLAIAGWISALWGEQLIQYYL 283
>gi|289667055|ref|ZP_06488130.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 287
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S +++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSAWLVAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|188990483|ref|YP_001902493.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
campestris pv. campestris str. B100]
gi|167732243|emb|CAP50435.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
campestris pv. campestris]
Length = 287
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S+++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAVLGSIWLFAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|82703250|ref|YP_412816.1| prepilin peptidase [Nitrosospira multiformis ATCC 25196]
gi|82411315|gb|ABB75424.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Nitrosospira multiformis ATCC 25196]
Length = 302
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
V + L + +V A DL + ++PN ++I +L LL G D + +VG
Sbjct: 145 VIAFAALALVWAMVALAFIDLDTQLLPNDITIPLLWGGLLINLSGGFADIHSAVIGAVVG 204
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + MG GD KLL + W GW + +++G + + ++
Sbjct: 205 YLALWSVYWGYKLLTGREGMGYGDFKLLAAIGAWLGWQ-MLPLVILSSSLVGSMAGLGLM 263
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
IP+G + GG+++ A +G
Sbjct: 264 LAAK---------------HGRHVPIPFGPYLVCGGIVALFWGNEINRAYLG 300
>gi|254230335|ref|ZP_04923722.1| bacterial Peptidase A24 N-terminal domain family [Vibrio sp. Ex25]
gi|151937159|gb|EDN56030.1| bacterial Peptidase A24 N-terminal domain family [Vibrio sp. Ex25]
Length = 267
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 61/155 (39%), Gaps = 22/155 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ L F L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWAGIALALVEISPVTLQDSVIGAIAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G + + L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGIVFGIIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
++ ++ P+G +++
Sbjct: 248 RLQKQG---------------IEKAFPFGPYLAIA 267
>gi|325919048|ref|ZP_08181109.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
gardneri ATCC 19865]
gi|325550484|gb|EGD21277.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
gardneri ATCC 19865]
Length = 287
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S++++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSIWLVAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|83338373|gb|ABC11880.1| PilD [Aliivibrio fischeri]
Length = 295
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ ++ L+ D+ + ++P+++++ +L S L A + + + G
Sbjct: 133 FAIAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F MG GD KLL + W GW + +++G I+ V +L
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPLIILLSSVVGAIIGVIML 251
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
T + IP+G +++ G +
Sbjct: 252 TAQKKGFD---------------KAIPFGPYLAIAGWVCLLWG 279
>gi|59712795|ref|YP_205571.1| type 4 prepilin peptidase PilD [Vibrio fischeri ES114]
gi|59480896|gb|AAW86683.1| type 4 prepilin peptidase PilD [Vibrio fischeri ES114]
gi|83338470|gb|ABC11895.1| PilD [Vibrio fischeri ES114]
Length = 295
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ ++ L+ D+ + ++P+++++ +L S L A + + + G
Sbjct: 133 FAVAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F MG GD KLL + W GW + +++G I+ V +L
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPLIILLSSVVGAIIGVIML 251
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
T + IP+G +++ G +
Sbjct: 252 TAQKKGFD---------------KAIPFGPYLAIAGWVCLLWG 279
>gi|58581207|ref|YP_200223.1| type IV pre-pilin leader peptidase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84623123|ref|YP_450495.1| type IV pre-pilin leader peptidase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188575723|ref|YP_001912652.1| type IV prepilin peptidase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58425801|gb|AAW74838.1| type IV pre-pilin leader peptidase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84367063|dbj|BAE68221.1| type IV pre-pilin leader peptidase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188520175|gb|ACD58120.1| type IV prepilin peptidase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 287
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGATVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S++++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSIWLVAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|262280752|ref|ZP_06058535.1| type IV pilus prepilin peptidase PilD [Acinetobacter calcoaceticus
RUH2202]
gi|262257652|gb|EEY76387.1| type IV pilus prepilin peptidase PilD [Acinetobacter calcoaceticus
RUH2202]
Length = 286
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 23/172 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
+ L+ + L+ D + ++P+R ++ + L F + L+G
Sbjct: 132 IQMIFGLVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFSIYTTPTSAIWGYLIG 191
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ I + F MG GD KLL + W G + ++LG I+ + +L
Sbjct: 192 FLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAIIGIILL 250
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+R +G I++ G +++ +G
Sbjct: 251 KLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|315127773|ref|YP_004069776.1| leader peptide processing enzyme [Pseudoalteromonas sp. SM9913]
gi|315016287|gb|ADT69625.1| leader peptide processing enzyme [Pseudoalteromonas sp. SM9913]
Length = 292
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 66/170 (38%), Gaps = 21/170 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGL 66
+ ++++ + LV D+ ++P+++++ +L L+ + + + + G
Sbjct: 134 QALLYIVVTWALVALTFIDIDHMLLPDQLTLPLLWLALIASVMGYTIAPSDAIIGAACGY 193
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL GW S L+ + +++G ++ + +L+
Sbjct: 194 LSLWSVFWLFKLITGKEGMGYGDFKLLAVFGAILGWQ-SLLTIILLSSVVGAVIGIALLS 252
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
++ IP+G +++ G + + +
Sbjct: 253 IQGK---------------DKATPIPFGPYLAIAGWFTMLWGTQLQNSYF 287
>gi|289661859|ref|ZP_06483440.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
campestris pv. vasculorum NCPPB702]
Length = 287
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S +++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSAWLVAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAVAGWVVFFWG 273
>gi|289650991|ref|ZP_06482334.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 290
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QTAAMLVLSWGLLTMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|21232531|ref|NP_638448.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66767384|ref|YP_242146.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv.
campestris str. 8004]
gi|7674104|sp|Q56763|LEP4_XANCP RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|529683|gb|AAC43571.1| XpsO [Xanthomonas campestris]
gi|21114323|gb|AAM42372.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|37784401|gb|AAP43033.1| PilD [Xanthomonas campestris pv. campestris]
gi|66572716|gb|AAY48126.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv.
campestris str. 8004]
gi|1586804|prf||2204377A type IV pre-pilin leader peptidase
Length = 287
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S+++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAVLGSIWLFAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|160900922|ref|YP_001566504.1| prepilin peptidase [Delftia acidovorans SPH-1]
gi|160366506|gb|ABX38119.1| Prepilin peptidase [Delftia acidovorans SPH-1]
Length = 294
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 61/162 (37%), Gaps = 22/162 (13%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
A + + L+ AL D + ++P+ +++ +L + LL++ + VG +
Sbjct: 136 AAWCLFSAALLSLALIDWDTTLLPDDITLPLLWAGLLSSALHWTAVTLADAVWGAAVGYL 195
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F MG GD KL + WFGW + + + +++G ++ + +
Sbjct: 196 SLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQ-ALVPIILISSVIGAVVGIAL--- 251
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ +P+G ++ G +
Sbjct: 252 ------------KINSRLREGGYVPFGPFLAGAGFAAMVFGP 281
>gi|294649075|ref|ZP_06726519.1| Type 4 prepilin peptidase [Acinetobacter haemolyticus ATCC 19194]
gi|292825036|gb|EFF83795.1| Type 4 prepilin peptidase [Acinetobacter haemolyticus ATCC 19194]
Length = 286
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 23/172 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
+ L+ + L+ D + ++P+R ++ + L F + ++G
Sbjct: 132 LQMLFGLVLTWVLITLTFIDFDTQLLPDRFTLPLAALGLAINSFAIYTTANSAIWGYVIG 191
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ I + F MG GD KLL + W G + +++G I+ + +L
Sbjct: 192 FLCLWIVYYLFKIFTGKEGMGYGDFKLLAALGAWMGP-MLLPLIVLLSSVVGAIIGIILL 250
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+R +G I++ G I++ +G
Sbjct: 251 KMRG-----------------ENQPFAFGPYIAIAGWIAFLWGDQIMKVYLG 285
>gi|83338418|gb|ABC11886.1| PilD [Aliivibrio fischeri]
Length = 295
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ ++ L+ D+ + ++P+++++ +L S L A + + + G
Sbjct: 133 FAIAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F MG GD KLL + W GW + +++G I+ V +L
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPLIILLSSVVGAIIGVIML 251
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
T + IP+G +++ G +
Sbjct: 252 TAQKKGFD---------------KAIPFGPYLAIAGWVCLLWG 279
>gi|226951822|ref|ZP_03822286.1| type 4 prepilin-like protein leader peptide processing enzyme
[Acinetobacter sp. ATCC 27244]
gi|226837362|gb|EEH69745.1| type 4 prepilin-like protein leader peptide processing enzyme
[Acinetobacter sp. ATCC 27244]
Length = 285
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 23/172 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
+ L+ + L+ D + ++P+R ++ + L F + ++G
Sbjct: 131 LQMLFGLVLTWVLITLTFIDFDTQLLPDRFTLPLAALGLAINSFAIYTTANSAIWGYVIG 190
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ I + F MG GD KLL + W G + +++G I+ + +L
Sbjct: 191 FLCLWIVYYLFKIFTGKEGMGYGDFKLLAALGAWMGP-MLLPLIVLLSSVVGAIIGIILL 249
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+R +G I++ G I++ +G
Sbjct: 250 KMRG-----------------ENQPFAFGPYIAIAGWIAFLWGDQIMKVYLG 284
>gi|90580240|ref|ZP_01236047.1| putative leader peptidase PilD [Vibrio angustum S14]
gi|90438542|gb|EAS63726.1| putative leader peptidase PilD [Vibrio angustum S14]
Length = 289
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
+ + F L+ D+ ++P+++++ ++ +L + + + + + G
Sbjct: 130 AIAVIFFTFALIALTFIDIDKMLLPDQITLPLMWVGILLSVMGISPVSLTDSVIGTMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F + MG GD KLL + W GW + +++G + + +L
Sbjct: 190 LSLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGWQ-LLPFVVLLSSLVGAVCGIVLL- 247
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ + +G +++ G I+
Sbjct: 248 --------------KMQDADNQTPFSFGPYLAVAGWIALLWGE 276
>gi|262190163|ref|ZP_06048445.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae CT 5369-93]
gi|262033954|gb|EEY52412.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae CT 5369-93]
Length = 310
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A D + ++P+++++ ++ + A + + +
Sbjct: 147 VFAVALLFFTYVLIAATFIDFDTLLLPDQLTLPLMWGGIALALLGFSPVSLSDAVIGAMA 206
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 207 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 265
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G +++ G +
Sbjct: 266 LRQQKKGIDM---------------AFPFGPYLAIAGWFALLWGD 295
>gi|166713144|ref|ZP_02244351.1| type IV pre-pilin leader peptidase [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 287
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGATVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + S++++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSIWLVAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|83338398|gb|ABC11883.1| PilD [Aliivibrio fischeri]
Length = 295
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ ++ L+ D+ + ++P+++++ +L S L A + + + G
Sbjct: 133 FAVAAILFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWNSVSLVDSVVGAMAG 192
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F MG GD KLL + W GW L L + I + +
Sbjct: 193 YLILWSIYWCFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPLIILLSSVVGAIIGVIMLT 252
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + IP+G +++ G +
Sbjct: 253 AQKKGFD----------------KAIPFGPYLAIAGWVCLLWG 279
>gi|256821933|ref|YP_003145896.1| prepilin peptidase [Kangiella koreensis DSM 16069]
gi|256795472|gb|ACV26128.1| Prepilin peptidase [Kangiella koreensis DSM 16069]
Length = 302
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 29/170 (17%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---------DYELIA 59
A LI LV + D ++P+++++ ++ L+ A L D
Sbjct: 137 LAFALILTCFLVAGSYIDYDHKILPDQLTLPLVWIGLVAALWLAPELAQTGFAKDLPSAV 196
Query: 60 LHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
+ L G + + F MG GD KLL + + GW + + G +
Sbjct: 197 IGALAGYLSLWSIYWLFKLLTGKEGMGHGDFKLLAALGAFLGWQ-MLPLVILLSTVTGAV 255
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + V KIP+G +++ G I+
Sbjct: 256 LGIVAMVVSKQGRDY---------------KIPFGPFLAIAGWIALIWGE 290
>gi|254515230|ref|ZP_05127291.1| type IV pilus prepilin peptidase PilD [gamma proteobacterium
NOR5-3]
gi|219677473|gb|EED33838.1| type IV pilus prepilin peptidase PilD [gamma proteobacterium
NOR5-3]
Length = 295
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 21/163 (12%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIICFC 74
+ L+ A+ D+ + ++P+ +++ +L + LL LG L G ++ +
Sbjct: 146 TWSLIALAVIDIDTQLLPDDITLPLLWAGLLFNVFLGPTAPVDAILGAAGGYLLLWSIYW 205
Query: 75 FFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F MG GD KLL + W GW + L A+ + + I+
Sbjct: 206 LFKLATGKEGMGYGDFKLLAALGAWLGWQNLPIIILLSSAVGAVLGVLIIVVQGK----- 260
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +P+G ++ G IS L+
Sbjct: 261 -----------DRSHPLPFGPYLAAAGWISLLWGGTLSALLLA 292
>gi|213536335|gb|ACJ51079.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 64/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G +++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVAFMWGDSLMSWYLNYL 286
>gi|313497008|gb|ADR58374.1| Prepilin peptidase [Pseudomonas putida BIRD-1]
Length = 283
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
V + + L +CL+ +L D ++P+ + + + L+ + + G
Sbjct: 124 VEALLALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLADALWGAVAG 183
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL+ W GW L+ L +++G ++ + +L
Sbjct: 184 YLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLL 242
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R + IP+G +++ G I+ + + L
Sbjct: 243 RFRR---------------HALGTAIPFGPYLAIAGWIAVLWGDEIYASYIQL 280
>gi|237802034|ref|ZP_04590495.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331024890|gb|EGI04946.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 290
Score = 88.4 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 21/166 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
VR + IP+G +++ G I+
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQIT 280
>gi|320155370|ref|YP_004187749.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
vulnificus MO6-24/O]
gi|213536341|gb|ACJ51082.1| prepilin peptidase [Vibrio vulnificus]
gi|319930682|gb|ADV85546.1| leader peptidase (Prepilin peptidase) / N-methyltransferase [Vibrio
vulnificus MO6-24/O]
Length = 289
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 63/174 (36%), Gaps = 23/174 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGLS 175
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYLM 287
>gi|319786264|ref|YP_004145739.1| prepilin peptidase [Pseudoxanthomonas suwonensis 11-1]
gi|317464776|gb|ADV26508.1| Prepilin peptidase [Pseudoxanthomonas suwonensis 11-1]
Length = 287
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ + LV + DL + ++P+++++ ++ L+ + L M + L + G +
Sbjct: 133 MLLTWYLVALSGIDLRTRLLPDQLTLPLMWLGLIASLDNLYMPAKPALLGAVAGYVSLWS 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + I SV++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILLSSVVGAVIGSVWLAYKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G +++ G I + A +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWIFFFWGDSLLGAYRSYA 284
>gi|213536359|gb|ACJ51091.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 88.0 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWTGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|119472645|ref|ZP_01614636.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Alteromonadales bacterium TW-7]
gi|119444849|gb|EAW26150.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Alteromonadales bacterium TW-7]
Length = 297
Score = 88.0 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
+ ++++ + LV D+ ++P+++++ ++ L A + + G
Sbjct: 139 QALLYIVITWALVALTFIDIDHMLLPDQLTLPLVWLALTAAVAGITITPSDAIMGAAFGY 198
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL GW S L+ + +++G I+ + +L+
Sbjct: 199 LSLWSVFWLFKLLTGKEGMGHGDFKLLALFGALLGWQ-SLLTIILLSSVVGAIIGIALLS 257
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G +++ G I+ + A L
Sbjct: 258 TQGK---------------DKATPIPFGPYLAIAGWITLLWGNQLQSAYFNL 294
>gi|213536349|gb|ACJ51086.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 88.0 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|302189196|ref|ZP_07265869.1| prepilin peptidase [Pseudomonas syringae pv. syringae 642]
Length = 290
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A LI + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLILSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|254492242|ref|ZP_05105416.1| Bacterial Peptidase A24 N-terminal domain family [Methylophaga
thiooxidans DMS010]
gi|224462567|gb|EEF78842.1| Bacterial Peptidase A24 N-terminal domain family [Methylophaga
thiooxydans DMS010]
Length = 289
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 21/168 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L+ DL ++P+++++ + + D + + G +
Sbjct: 135 LLLTWSLIALTFIDLDHQLLPDKITLPFVWLGIFFNLFGIYTDLASSVIGAIAGYLSLWS 194
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL W GW + +++G ++ + ++ +R
Sbjct: 195 IYHLFRLITGKEGMGYGDFKLLAVLGAWMGWQY-LPMIILLSSLVGAVVGISLILLRR-- 251
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G ++ G I+ + L+
Sbjct: 252 -------------HQRDIPIPFGPYLAAAGWIALIWGEPLNQGYLKLA 286
>gi|257484000|ref|ZP_05638041.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331013019|gb|EGH93075.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 290
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|213536369|gb|ACJ51096.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +I+G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSIVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|213536373|gb|ACJ51098.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|330987705|gb|EGH85808.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 290
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|28868144|ref|NP_790763.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28851381|gb|AAO54458.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
tomato str. DC3000]
gi|331018825|gb|EGH98881.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 290
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLSDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|296444398|ref|ZP_06886363.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b]
gi|296258045|gb|EFH05107.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b]
Length = 167
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 1/168 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + ++ P +VFAA +DL + IPNRVSI ++ F A M + H G
Sbjct: 1 MIEAVALVLFPTLMVFAAFTDLLTMTIPNRVSIALVVIFAALAAYTQMPLAIALSHASCG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+++ I+ F F +GGGD KL ++TA+W GW L + +++GG L++ IL +R
Sbjct: 61 MVMLIVTFAMFQLGWIGGGDAKLASATALWLGWDH-LLDYGLAASLIGGALTLVILELRR 119
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+PYGIA+++GGL+ YP S ++ + +
Sbjct: 120 REPRAVADSPRFAHLCDSMAGVPYGIALAIGGLLIYPQSRVWTLLVGA 167
>gi|213536367|gb|ACJ51095.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|27364987|ref|NP_760515.1| prepilin peptidase [Vibrio vulnificus CMCP6]
gi|7674103|sp|Q56740|LEP4_VIBVU RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|1213333|gb|AAA91206.1| VvpD [Vibrio vulnificus]
gi|3228678|gb|AAC23601.1| type IV prepilin leader peptidase [Vibrio vulnificus]
gi|27361133|gb|AAO10042.1| Leader peptidase (Prepilin peptidase) [Vibrio vulnificus CMCP6]
gi|213536361|gb|ACJ51092.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWTGIALALLEISPVSLQDSVFGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|330446855|ref|ZP_08310506.1| type IV leader peptidase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328491046|dbj|GAA05003.1| type IV leader peptidase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 289
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 61/170 (35%), Gaps = 23/170 (13%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIV 68
+ F L+ D+ ++P+++++ ++ + ++ + + + + + G +
Sbjct: 132 AVIFFTFALIALTFIDIDKMLLPDQITLPLMWAGIVLSVAGISPVSLTDSVIGAMAGYLS 191
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F F + MG GD KLL + W GW + +++G + + +L
Sbjct: 192 LWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGWQ-LLPFVVLLSSLVGALCGLVLL--- 247
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMG 173
+ + +G +++ G I+ + L
Sbjct: 248 ------------KMQDADNQTPFSFGPYLAIAGWIAMLWGAPIIDWYLTS 285
>gi|89074158|ref|ZP_01160657.1| putative leader peptidase PilD [Photobacterium sp. SKA34]
gi|89050094|gb|EAR55620.1| putative leader peptidase PilD [Photobacterium sp. SKA34]
Length = 289
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 60/163 (36%), Gaps = 22/163 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
+ + F L+ D+ ++P+++++ ++ + +L + + + + + G
Sbjct: 130 AIAVIFFTFALIALTFIDIDKMLLPDQITLPLMWAGILLSIMGISPVSLTDSVIGAIAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F + MG GD KLL + W GW + +++G + + +L
Sbjct: 190 LSLWSVFWAFKLLTKKDGMGYGDFKLLAALGAWLGWQ-LLPFVVLLSSLVGALCGIVLL- 247
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ + +G +++ G I+
Sbjct: 248 --------------KMQDTDNQTPFSFGPYLAVAGWIALLWGE 276
>gi|184156663|ref|YP_001845002.1| Type II secretory pathway, prepilin signal peptidase PulO
[Acinetobacter baumannii ACICU]
gi|332873071|ref|ZP_08441028.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Acinetobacter baumannii 6014059]
gi|183208257|gb|ACC55655.1| Type II secretory pathway, prepilin signal peptidase PulO
[Acinetobacter baumannii ACICU]
gi|322506550|gb|ADX02004.1| pilD [Acinetobacter baumannii 1656-2]
gi|323516429|gb|ADX90810.1| Type II secretory pathway, prepilin signal peptidase PulO
[Acinetobacter baumannii TCDC-AB0715]
gi|332738583|gb|EGJ69453.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Acinetobacter baumannii 6014059]
Length = 286
Score = 87.6 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + LI + L+ D + ++P+R ++ + L F +
Sbjct: 126 MVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAI 185
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G L L
Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSS------ 239
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
I G+ + K +G I++ G +++ +G
Sbjct: 240 ------------LIGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|289626921|ref|ZP_06459875.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|330867359|gb|EGH02068.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 290
Score = 87.6 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QTAAMLVLSWGLLTMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAITGWIALLWGGQITDSYMQFA 287
>gi|148545923|ref|YP_001266025.1| prepilin peptidase [Pseudomonas putida F1]
gi|148509981|gb|ABQ76841.1| Prepilin peptidase [Pseudomonas putida F1]
Length = 288
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
V + + L +CL+ +L D ++P+ + + + L+ + + G
Sbjct: 129 VEALLALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLADALWGAVAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL+ W GW L+ L +++G ++ + +L
Sbjct: 189 YLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R + IP+G +++ G I+ + + L
Sbjct: 248 RFRR---------------HALGTAIPFGPYLAIAGWIAVLWGDEIYASYIQL 285
>gi|213536339|gb|ACJ51081.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +I+G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSIVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|71735543|ref|YP_273100.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71556096|gb|AAZ35307.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 290
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|153871818|ref|ZP_02000890.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Beggiatoa sp. PS]
gi|152071716|gb|EDN69110.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Beggiatoa sp. PS]
Length = 289
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 21/167 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L + ++ A++ D ++P+ +++ L LL D E + +VG + I
Sbjct: 136 LFLTWAMLAASMIDFDHQLLPDNITLPFLWLGLLFNLFGVYTDIESSVIGAIVGYLSLWI 195
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL W GW + + +++G I+ + ++ +R
Sbjct: 196 VYKLFKWTTGKEGMGYGDFKLLAMLGAWLGWQ-ALPVIILLSSLVGAIIGILLILLRG-- 252
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
IP+G ++M G +S
Sbjct: 253 -------------HDRSVPIPFGPYLAMAGWLSLLWGETLTNVYFLW 286
>gi|213536351|gb|ACJ51087.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|221068972|ref|ZP_03545077.1| Prepilin peptidase [Comamonas testosteroni KF-1]
gi|220713995|gb|EED69363.1| Prepilin peptidase [Comamonas testosteroni KF-1]
Length = 289
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 22/166 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIIC 72
L+ AL D + +P+ +++ +L + L+ + + + + G + +
Sbjct: 140 FSAALLTLALIDWDTTFLPDSITVPLLWAGLIASALQWTNVPLQQSLWGAVAGYMSLWLI 199
Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F F MG GD KL + WFGW + + + +++G ++ + +
Sbjct: 200 FWAFKLATGKEGMGYGDFKLFAALGAWFGWQ-ALVPIILMASVVGAVIGIML-------- 250
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ +P+G ++ GG +S + GL
Sbjct: 251 -------KINSQLREGGYVPFGPFLAGGGFVSLIWGPQAVLGFAGL 289
>gi|320326052|gb|EFW82109.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330217|gb|EFW86202.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330880436|gb|EGH14585.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 290
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|294139026|ref|YP_003555004.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Shewanella violacea DSS12]
gi|293325495|dbj|BAJ00226.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Shewanella violacea DSS12]
Length = 305
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 21/163 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ A + F L+ DL ++P+++++ +L L+ + G
Sbjct: 146 LEFAFATVLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLIINLDSTFASPSDALIGAAAG 205
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F F + MG GD KLL WFGW + +I+G ++ + ++
Sbjct: 206 YLSLWSVFWAFKLLTGKDGMGYGDFKLLAVFGAWFGWQ-LLPQIILLSSIVGAVVGIMLI 264
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ N IP+G I++ G I+
Sbjct: 265 ISKR---------------LNKGNPIPFGPYIALAGWIAMIWG 292
>gi|209551757|ref|YP_002283674.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537513|gb|ACI57448.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 170
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 82/169 (48%), Positives = 111/169 (65%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ +AVF+I P CL A SDLF+ IPNRVS++++ SF + A L G+ + I +HL
Sbjct: 1 MIAAAVFMILPLCLAMAGFSDLFTMTIPNRVSLILIVSFFVLAPLSGLGLQAIGMHLAAA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
IVF CF FAFN+MGGGD KLL++TA+WFG S L + VAI+GG +++ IL VR
Sbjct: 61 AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMSDVAIIGGFITLLILMVRA 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I G+ VP S L+ KIPYGIAI++GG +++P S LF L L
Sbjct: 121 QADTILAIGLPVPNSILIAKKIPYGIAIAIGGFMAFPSSPLFLTTLESL 169
>gi|260771889|ref|ZP_05880807.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
metschnikovii CIP 69.14]
gi|260613181|gb|EEX38382.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
metschnikovii CIP 69.14]
Length = 288
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
S L+ + L+ A DL S ++P+++++ +L + + A + + + + G
Sbjct: 130 SVALLLFTYVLIAATFIDLDSMLLPDQLTLPLLWAGISLALLNISPLSLNDAVIGAIAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G + + L
Sbjct: 190 LCLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQ-LLPLIVLLSSLVGLVFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIN---------------KAFPFGPYLAIAGWLAMLWGDKLIAWYLHSL 286
>gi|213536333|gb|ACJ51078.1| prepilin peptidase [Vibrio vulnificus]
gi|213536337|gb|ACJ51080.1| prepilin peptidase [Vibrio vulnificus]
gi|213536343|gb|ACJ51083.1| prepilin peptidase [Vibrio vulnificus]
gi|213536363|gb|ACJ51093.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|213536357|gb|ACJ51090.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 87.2 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 22/159 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWTGIALALLEISPVSLQDSVFGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
++ + P+G +++ G ++
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVAL 272
>gi|213970188|ref|ZP_03398319.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
tomato T1]
gi|301385924|ref|ZP_07234342.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
tomato Max13]
gi|302063131|ref|ZP_07254672.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
tomato K40]
gi|302134157|ref|ZP_07260147.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213925069|gb|EEB58633.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
tomato T1]
Length = 290
Score = 87.2 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLSDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|170723699|ref|YP_001751387.1| prepilin peptidase [Pseudomonas putida W619]
gi|169761702|gb|ACA75018.1| Prepilin peptidase [Pseudomonas putida W619]
Length = 288
Score = 87.2 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 21/165 (12%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFIICF 73
+ L+ +L D ++P+ + + L L+ F + + G + +
Sbjct: 137 FTWSLLALSLVDHDKQILPDVLVLPTLWLGLIVNVFDTVVPLSDAIWGAVAGYLSLWTVY 196
Query: 74 CFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
F MG GD KLL W GW L+ + +++G ++ + +L +R
Sbjct: 197 WLFKLITGKEGMGYGDFKLLALIGAWGGWQVVPLTLML-SSLVGAVVGLCMLRLR----- 250
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
S M IP+G +++ G I+ + + L
Sbjct: 251 ----------SHSMGTAIPFGPYLAIAGWIAVLWGDEIYASYLQL 285
>gi|325124300|gb|ADY83823.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Acinetobacter calcoaceticus PHEA-2]
Length = 243
Score = 87.2 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + L+ + L+ D + ++P+R ++ + L F +
Sbjct: 83 MVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFSIYTSPNSAI 142
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G + ++LG I
Sbjct: 143 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAI 201
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +L +R +G I++ G +++ +G
Sbjct: 202 IGIILLKLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 242
>gi|15839126|ref|NP_299814.1| pre-pilin leader peptidase [Xylella fastidiosa 9a5c]
gi|9107744|gb|AAF85334.1|AE004060_9 pre-pilin leader peptidase [Xylella fastidiosa 9a5c]
Length = 287
Score = 87.2 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV A DL + ++P++++++++ L+ + L M + L +VG + I
Sbjct: 133 IVFSCFLVALAGIDLRTRLLPDQLTLMLMWLGLIGSTDNLFMAAKPALLGAVVGYLSLWI 192
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F MG GD K+L + W G + ++ G +L L VR
Sbjct: 193 VAALFKLIFNKEGMGHGDFKMLAALGAWCGLKGILP-IILISSLAGVVLGSVWLVVRG-- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
IP+G +++GG I + A + L +
Sbjct: 250 -------------HNRTTMIPFGPYLAVGGWIVFFFGDQIIHAYLELLS 285
>gi|258620852|ref|ZP_05715886.1| leader peptidase PilD [Vibrio mimicus VM573]
gi|258586240|gb|EEW10955.1| leader peptidase PilD [Vibrio mimicus VM573]
Length = 291
Score = 87.2 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 22/164 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
VF+ L + L+ A D + ++P+++++ +L + A + + +
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTMLLPDQLTLPLLWGGIALALFGLSPVSLTDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G + +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGLLFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
L ++ P+G +++ G I+
Sbjct: 247 LRLQKQGID---------------KAFPFGPYLAIAGWIALLWG 275
>gi|293610128|ref|ZP_06692429.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827360|gb|EFF85724.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 286
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
M + L+ + L+ D + ++P+R ++ + L F +
Sbjct: 126 MVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAI 185
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L+G + I + F MG GD KLL + W G + ++LG I
Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLLGAI 244
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +L +R +G I++ G +++ +G
Sbjct: 245 IGIILLKLR-----------------NDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLG 285
>gi|117918874|ref|YP_868066.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella sp. ANA-3]
gi|117611206|gb|ABK46660.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella sp. ANA-3]
Length = 309
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
+ F L+ DL ++P+++++ +L LL + G
Sbjct: 153 QFVFAAVLTFVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTTPTDAVIGAAAGY 212
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++G ++ + ++
Sbjct: 213 LSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGALVGITLIV 271
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMGL 174
++ N IP+G I+ G I+ + L L
Sbjct: 272 LKRNQLA---------------NPIPFGPYIAAAGWIALIWGQPIVDWYLSTL 309
>gi|330977426|gb|EGH77373.1| prepilin peptidase [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 290
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFSSLNNALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|213536345|gb|ACJ51084.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|119899525|ref|YP_934738.1| prepilin peptidase [Azoarcus sp. BH72]
gi|119671938|emb|CAL95852.1| prepilin peptidase [Azoarcus sp. BH72]
Length = 283
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 21/151 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ + LI + ++ A DL + ++P+++++ +L L + + ++G
Sbjct: 126 LAAVGGLIFLWSMIALAFIDLDTQLLPDQITLPLLWLGLAFNLASTYVPLSAAVVGAMLG 185
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW L+ L + + IL
Sbjct: 186 YLSLWSVYWLFKLVTGKEGMGYGDFKLLAAIGAWLGWQVLPLTILLSSLVGAAVGISLIL 245
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
R IP+G
Sbjct: 246 FAR----------------HGRNVPIPFGPY 260
>gi|117617611|ref|YP_858310.1| prepilin peptidase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117559018|gb|ABK35966.1| prepilin peptidase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 290
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 21/159 (13%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFC 74
+ LV DL ++P+++++ +L LL G + + G +V +
Sbjct: 141 TWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLAGGFIPLADAVIGAMAGYLVLWSLYW 200
Query: 75 FFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F MG GD KLL + W GW + L +++G + + ++ +R
Sbjct: 201 AFKLLTGKEGMGYGDFKLLAALGAWLGWQ-ALPIVLLLSSLVGAFIGIGLILLRN----- 254
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
IP+G +++ G I+
Sbjct: 255 ----------HHQNKPIPFGPYLAIAGWIALLWGDTITR 283
>gi|213536355|gb|ACJ51089.1| prepilin peptidase [Vibrio vulnificus]
gi|213536365|gb|ACJ51094.1| prepilin peptidase [Vibrio vulnificus]
gi|213536371|gb|ACJ51097.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLISATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGTMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|288939922|ref|YP_003442162.1| Prepilin peptidase [Allochromatium vinosum DSM 180]
gi|288895294|gb|ADC61130.1| Prepilin peptidase [Allochromatium vinosum DSM 180]
Length = 296
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+A L+ + L+ A+ DL + ++P+ +++ +L L + D + + + G
Sbjct: 137 QAAAALLLTWSLIALAVIDLDTQLLPDSLTLPVLWLGLFLSLFGLFTDSQSAIIGAVAGY 196
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW P+ + A++G ++ V ++
Sbjct: 197 LSLWTVFQLFRLATGKEGMGYGDFKLLALFGAWLGW-PALPQIILLSALVGALVGVGLIL 255
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+P+G ++ G IS A + LS
Sbjct: 256 SGR---------------HESGKPLPFGPYLAAAGWISLIWGEAINGAYLRLS 293
>gi|113968762|ref|YP_732555.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella sp. MR-4]
gi|113883446|gb|ABI37498.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella sp. MR-4]
Length = 308
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
+ F L+ DL ++P+++++ +L LL + G
Sbjct: 152 QFVFAAVLTFVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTTPTDAVIGAAAGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++G ++ + ++
Sbjct: 212 LSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGALVGITLIV 270
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMGL 174
++ N IP+G I+ G I+ + L L
Sbjct: 271 LKRNQLA---------------NPIPFGPYIAAAGWIALIWGQPIVDWYLSTL 308
>gi|330890705|gb|EGH23366.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
mori str. 301020]
Length = 290
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QTAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + + +P IP+G +++ G I+ + M +
Sbjct: 250 VRRVESSMP---------------IPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|213536347|gb|ACJ51085.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TIALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|209886529|ref|YP_002290386.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5]
gi|209874725|gb|ACI94521.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5]
Length = 174
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 86/171 (50%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ A + P + FAA+SD+ + I NRVS++++G F + A L GM+ E I H G
Sbjct: 2 LLDLARLFLFPALMAFAAVSDILTMTISNRVSLLLIGGFFVLAGLTGMNLETIGWHAAAG 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
V ++ F FAF +GGGD K+ S A+WFG+ + + G + + + R
Sbjct: 62 ATVLVVAFTCFAFGWIGGGDAKIAASAALWFGFAHLLDYLVAASIVGGALTLIILQLRRW 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
++ + IPYG+A++ G ++ YP++ ++A SA
Sbjct: 122 PMPAFLTSQDWLVRLHDKATGIPYGVALAAGAMLVYPNTEWVRLAAFATSA 172
>gi|315179151|gb|ADT86065.1| leader peptidase PilD [Vibrio furnissii NCTC 11218]
Length = 289
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 22/167 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ L + L+ A D + ++P+++++ ++ + A + + + + + G
Sbjct: 129 FAVALLFFSYVLIAATFIDFDTMLLPDQLTLPLMWGGIALALAGISPITLQDAVIGAMAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW + +++G + + L
Sbjct: 189 YLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPIIILMSSVVGLVFGLIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
++ P+G +++ G +S
Sbjct: 248 RLQKRGID---------------KAFPFGPYLAIAGWLSALYGQAIV 279
>gi|15963892|ref|NP_384245.1| putative pilus assembly transmembrane protein [Sinorhizobium
meliloti 1021]
gi|15073067|emb|CAC41526.1| Putative pilus assembly transmembrane protein [Sinorhizobium
meliloti 1021]
Length = 174
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 76/174 (43%), Positives = 110/174 (63%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
E +M+ + + ++ PF L AALSDL + IPNRVS+V+L SF A L G+D + LH
Sbjct: 1 MELEMINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLH 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ ++F + F FA N+MGGGD KLLT++A WFG+ S ++FL +V+ GG L++ +L
Sbjct: 61 TVAAGLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVL 120
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R N I + VP+ L KIPYGIAI++GG +YP S L ++A LS
Sbjct: 121 LLRSKENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 174
>gi|145297498|ref|YP_001140339.1| type IV prepilin peptidase TapD [Aeromonas salmonicida subsp.
salmonicida A449]
gi|148887160|sp|A2T195|LEP4_AERS4 RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|148887161|sp|P0C423|LEP4_AERSA RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|3088559|gb|AAC23569.1| type IV prepilin peptidase TapD [Aeromonas salmonicida]
gi|88866546|gb|ABD57323.1| TapD [Aeromonas salmonicida subsp. salmonicida A449]
gi|142850270|gb|ABO88591.1| type IV prepilin peptidase TapD [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 291
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLI 67
+ L+ + LV DL ++P+++++ +L LL L + + + G +
Sbjct: 135 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYL 194
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
V + F MG GD KLL + W GW + L +++G I + ++ +
Sbjct: 195 VLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQ-ALPIVLLLSSLVGAIFGIGLILL 253
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R IP+G +++ G I+ +
Sbjct: 254 RN---------------HHQSKPIPFGPYLAIAGWIALLWGDSITRWYLST 289
>gi|289674984|ref|ZP_06495874.1| prepilin peptidase [Pseudomonas syringae pv. syringae FF5]
Length = 290
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|547850|sp|P36642|LEP4_PSEPU RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; AltName: Full=Protein pilD;
AltName: Full=Protein secretion protein XCPA; Includes:
RecName: Full=Leader peptidase; AltName: Full=Prepilin
peptidase; Includes: RecName: Full=N-methyltransferase
gi|396265|emb|CAA52334.1| prepilin peptidase [Pseudomonas putida]
Length = 288
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 21/174 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIAL 60
+ V + V L + L+ +L D ++P+ + + L L+ + +
Sbjct: 124 RYGASVEALVLLPLTWSLLALSLIDHDQQLLPDAIVLPGLWLGLIVNYFGVWVPLPDAVC 183
Query: 61 HLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+VG + + F MG GD KLL W GW L+ L ++LG ++
Sbjct: 184 GAVVGYLSLWTVYWLFKLVTGKEGMGYGDFKLLALLGAWGGWQVLPLTLLL-SSVLGALV 242
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
V++L VR M +P+G +++ G I+ +
Sbjct: 243 GVYLLRVRN---------------DSMGTAMPFGPYLAIAGWIAVLWGDEIYAS 281
>gi|213536331|gb|ACJ51077.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGLTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +I+G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSIVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|121998801|ref|YP_001003588.1| prepilin peptidase [Halorhodospira halophila SL1]
gi|121590206|gb|ABM62786.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Halorhodospira halophila SL1]
Length = 296
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 23/159 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE--LIALHLLVGLIVFI 70
L+ + L+ AA D ++P+ +++ L L+ + + + + G +
Sbjct: 147 LLLTWALIAAAAIDYEHYLLPDALTLPALWLGLIWSVVDPGPPTPTDAIIGAVAGYLALW 206
Query: 71 ICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
F MG GD KL + W GW + + + F A+ G ++++ +
Sbjct: 207 AIFHGHRLVTGREGMGYGDFKLTAALGAWLGWQ-ALPALVLFAALTGLLVAIVLAVRSRP 265
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ +P+G A+++ G + S
Sbjct: 266 ----------------LGQPLPFGPALALAGWVLLVLSP 288
>gi|213536353|gb|ACJ51088.1| prepilin peptidase [Vibrio vulnificus]
Length = 289
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 23/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 130 TVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G I + L
Sbjct: 190 LCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQY-LPMIILLSSVVGLIFGLIQLR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
++ + P+G +++ G ++ L L L
Sbjct: 249 LQKQGIEM---------------AFPFGPYLAIAGWVALMWGDSLMSWYLNYL 286
>gi|262404738|ref|ZP_06081293.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
sp. RC586]
gi|262349770|gb|EEY98908.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
sp. RC586]
Length = 291
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A DL + ++P+++++ +L + A + + +
Sbjct: 128 VFTVALLFFSYVLIAATFIDLDTMLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQ-LLPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G +++ G +
Sbjct: 247 LRQQKKGIDM---------------AFPFGPYLAIAGWFALLWGE 276
>gi|26987368|ref|NP_742793.1| prepilin peptidase [Pseudomonas putida KT2440]
gi|24982022|gb|AAN66257.1|AE016254_4 type IV pili prepilin peptidase PilD/XcpA [Pseudomonas putida
KT2440]
Length = 288
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
V + V L +CL+ +L D ++P+ + + + L+ + + G
Sbjct: 129 VEALVALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLADALWGAVAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL+ W GW L+ L +++G + + +L
Sbjct: 189 YLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALFGLCLL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R M IP+G +++ G I+ + M L
Sbjct: 248 RFRR---------------DAMGTAIPFGPYLAIAGWIAVLWGDEIYASYMQL 285
>gi|66044051|ref|YP_233892.1| prepilin peptidase [Pseudomonas syringae pv. syringae B728a]
gi|63254758|gb|AAY35854.1| Prepilin peptidase [Pseudomonas syringae pv. syringae B728a]
Length = 290
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QATAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|88859014|ref|ZP_01133655.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Pseudoalteromonas tunicata D2]
gi|88819240|gb|EAR29054.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Pseudoalteromonas tunicata D2]
Length = 305
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 67/172 (38%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
+ ++L + L+ D+ ++P+++++ +L LL + ++ + +G
Sbjct: 147 QTVLYLGVTWALIALIFIDIDHMLLPDQITLPLLWLGLLASIFGLTIEPAQAIIGAALGY 206
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F + F MG GD KL+ GW + + +++G ++ + +L+
Sbjct: 207 LSFWSVYWLFKLATGKEGMGYGDFKLMAVFGALLGWQ-ALPMIILLSSLVGAVIGITLLS 265
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
++ IP+G I++ G ++ +A L
Sbjct: 266 IQGK---------------DKATPIPFGPYIAIAGWVAILWGTEISIAYYSL 302
>gi|330973677|gb|EGH73743.1| prepilin peptidase [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 290
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|330900442|gb|EGH31861.1| prepilin peptidase [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 290
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|307824335|ref|ZP_07654561.1| Prepilin peptidase [Methylobacter tundripaludum SV96]
gi|307734715|gb|EFO05566.1| Prepilin peptidase [Methylobacter tundripaludum SV96]
Length = 300
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 21/162 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ LI + L+ D+ ++P+ +++ +L + + F + D + G
Sbjct: 142 QAVFALILTWSLIALIFIDVDHQLLPDSITLPLLWLGMCLSLFNVYTDAHASIIGAAAGY 201
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
F F MG GD KLL W GW + +++G ++ V ++
Sbjct: 202 TALWAVFHLFKLATGKEGMGYGDFKLLALFGAWLGWQY-LPIIILLSSLVGAVIGVGMII 260
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+++P IP+G ++ G I+
Sbjct: 261 FVKHDHNVP---------------IPFGPYLAAAGWIALLWG 287
>gi|298485507|ref|ZP_07003590.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298159971|gb|EFI01009.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 290
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D + ++P+ + + +L L+ F L + G
Sbjct: 131 QTAAMLVLSWGLLTMSLIDADNQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|260771243|ref|ZP_05880170.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
furnissii CIP 102972]
gi|260613840|gb|EEX39032.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
furnissii CIP 102972]
Length = 289
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 22/167 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ L + L+ A D + ++P+++++ ++ + A + + + + G
Sbjct: 129 FAVALLFFSYVLIAATFIDFDTMLLPDQLTLPLMWGGIALALAGISPITLHDAVIGAMAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW + +++G + + L
Sbjct: 189 YLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPIIILMSSVVGLVFGLIQL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
++ P+G +++ G +S
Sbjct: 248 RLQKRGID---------------KAFPFGPYLAIAGWLSALYGQAIV 279
>gi|119505107|ref|ZP_01627183.1| Peptidase A24A, prepilin type IV:Peptidase A24A, N-terminal [marine
gamma proteobacterium HTCC2080]
gi|119459089|gb|EAW40188.1| Peptidase A24A, prepilin type IV:Peptidase A24A, N-terminal [marine
gamma proteobacterium HTCC2080]
Length = 288
Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ A L+ + L+ D+ + ++P+ +++ +L LL + G
Sbjct: 129 LQLAGALLLIWSLIALTGIDIDTQLLPDSITLPLLWLGLLLNINSTFTSLNDAVIGAAAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F + MG GD KLL + WFGW L + + I + IL
Sbjct: 189 YLTLWSVYWIFKLTTGKDGMGFGDFKLLAALGAWFGWQAIPLIIILSSFVGAFIGILLIL 248
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + +P+G ++ GL++ L
Sbjct: 249 LKKQ----------------GREVPMPFGPYLAGAGLLTLFYGDQLTATYFSL 285
>gi|121729938|ref|ZP_01682360.1| leader peptidase PilD [Vibrio cholerae V52]
gi|121628326|gb|EAX60833.1| leader peptidase PilD [Vibrio cholerae V52]
Length = 291
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF L + L+ A D + ++P+++++ +L + A + + +
Sbjct: 128 VFGVALLFFSYVLIAATFIDFDTMLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G +++ G +
Sbjct: 247 LRQQKKGIDM---------------AFPFGPYLAIAGWFALLWGD 276
>gi|149909374|ref|ZP_01898029.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Moritella sp. PE36]
gi|149807484|gb|EDM67433.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Moritella sp. PE36]
Length = 299
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 21/171 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ A LI + LV D+ ++P+++++ +L L + + +VG
Sbjct: 140 IQLAGALILTWTLVALTFIDIDKMLLPDQMTLPLLWLGLFLNVNYAWVTPSDAIIGAIVG 199
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + WFGW + + + G I+ + +
Sbjct: 200 YLSLWSVYWGFKLLTGKEGMGYGDFKLLAAFGAWFGWQSIL-AIVLLSSFAGAIIGITQI 258
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
++ N IP+G +++ G + +
Sbjct: 259 ALKK---------------HAKGNPIPFGPYLAIAGWLYLIWGDQLVDFYL 294
>gi|119477436|ref|ZP_01617627.1| type IV pilus prepilin peptidase PilD [marine gamma proteobacterium
HTCC2143]
gi|119449362|gb|EAW30601.1| type IV pilus prepilin peptidase PilD [marine gamma proteobacterium
HTCC2143]
Length = 292
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 62/174 (35%), Gaps = 21/174 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
+ L + L+ + D ++P+++++ +L + LL F L + + G
Sbjct: 132 LEMLAALFFTWSLIALTMIDADHKLLPDQITLPLLWAGLLLNSFSLFVPLYDAVWGAIGG 191
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F + MG GD KLL + W GW + L + + S+ +L
Sbjct: 192 YLSLWSVYWLFKILTGKDGMGYGDFKLLAALGAWLGWQSLLVIILLSSLVGAIVGSIILL 251
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ IP+G ++ G I++ A + S
Sbjct: 252 ANKQ----------------GRNTAIPFGPYLAAAGWIAFLWGDQIIDAYLRFS 289
>gi|212637456|ref|YP_002313981.1| Prepilin peptidase [Shewanella piezotolerans WP3]
gi|212558940|gb|ACJ31394.1| Prepilin peptidase [Shewanella piezotolerans WP3]
Length = 303
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
I F LV DL ++P+++++ +L L+ + + G
Sbjct: 147 EFVFSTILTFALVVLTGIDLDEMLLPDQITLPLLWLGLILNLSGTFVSMSDAIVGAAAGY 206
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL WFGW + +++G I+ + ++
Sbjct: 207 LSLWSVFWAFKLLTGKEGMGYGDFKLLAVFGAWFGWQ-VLPLVILLSSLVGAIVGISLIA 265
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ N IP+G I+ G I+ +
Sbjct: 266 FKK---------------LNQGNPIPFGPYIAAAGWIAMIWGESITQWYIST 302
>gi|325273278|ref|ZP_08139556.1| prepilin peptidase [Pseudomonas sp. TJI-51]
gi|324101609|gb|EGB99177.1| prepilin peptidase [Pseudomonas sp. TJI-51]
Length = 283
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ + L +CL+ +L D ++P+ + + ML L+ F + + + G
Sbjct: 125 EALLALPLTWCLLALSLIDADHQLLPDVLVLPMLWLGLIVNAFAVYVPLGSAVWGAVAGY 184
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KL+ W GW L+ L + + +
Sbjct: 185 LCLWSVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGALVGLCLLHL 244
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R + +P+G +++ G I+ + + L
Sbjct: 245 HR----------------HALGAAMPFGPYLAIAGWIAVLWGDEIYASYLQL 280
>gi|28199789|ref|NP_780103.1| pre-pilin leader peptidase [Xylella fastidiosa Temecula1]
gi|71275173|ref|ZP_00651460.1| Prepilin peptidase [Xylella fastidiosa Dixon]
gi|71898254|ref|ZP_00680428.1| Prepilin peptidase [Xylella fastidiosa Ann-1]
gi|71899810|ref|ZP_00681960.1| Prepilin peptidase [Xylella fastidiosa Ann-1]
gi|170731164|ref|YP_001776597.1| prepilin peptidase [Xylella fastidiosa M12]
gi|182682541|ref|YP_001830701.1| peptidase A24A domain-containing protein [Xylella fastidiosa M23]
gi|28057910|gb|AAO29752.1| pre-pilin leader peptidase [Xylella fastidiosa Temecula1]
gi|71163982|gb|EAO13697.1| Prepilin peptidase [Xylella fastidiosa Dixon]
gi|71730401|gb|EAO32482.1| Prepilin peptidase [Xylella fastidiosa Ann-1]
gi|71731993|gb|EAO34050.1| Prepilin peptidase [Xylella fastidiosa Ann-1]
gi|167965957|gb|ACA12967.1| Prepilin peptidase [Xylella fastidiosa M12]
gi|182632651|gb|ACB93427.1| peptidase A24A domain protein [Xylella fastidiosa M23]
gi|307578819|gb|ADN62788.1| peptidase A24A domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 287
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 21/169 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV A DL + ++P++++++++ L+ + L M + L VG + I
Sbjct: 133 IVFSCFLVALAGIDLRTRLLPDQLTLMLMWLGLIGSADNLFMAAKPALLGAAVGYLSLWI 192
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F MG GD K+L + W G + ++ G +L L VR
Sbjct: 193 VAALFKLIFNKEGMGHGDFKMLGALGAWCGLKGILP-IILISSLAGVVLGSVWLVVRG-- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
IP+G +++GG I + A + L +
Sbjct: 250 -------------HNRTTMIPFGPYLAVGGWIVFFFGDQIIHAYLELLS 285
>gi|328545281|ref|YP_004305390.1| peptidase A24A, prepilin type IV [polymorphum gilvum SL003B-26A1]
gi|326415023|gb|ADZ72086.1| Peptidase A24A, prepilin type IV [Polymorphum gilvum SL003B-26A1]
Length = 170
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ +A+ ++ P + FAA SDL + IPNRVS+++ G+F++ A GM IALH + G
Sbjct: 1 MLEAALLVVFPVLVAFAAASDLLTMTIPNRVSLLLAGAFVVLAVATGMSVAEIALHAVAG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
V +CF FA MGGGD K+ ++ +W G + ++FL I G +L++ +L+ R
Sbjct: 61 GTVLAVCFFLFAMGWMGGGDAKIASAIGLWLGLSSHLVAFLMLTTIYGMVLTIVLLSFRR 120
Query: 126 ITNHI--PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ ++ + + IPYGIAI+ L +YP ++ F +A +G
Sbjct: 121 LPYLPGGLGRQEWMLRLHDTRTGIPYGIAIAAAALQTYPTTHWFALAALG 170
>gi|110636418|ref|YP_676626.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1]
gi|110287402|gb|ABG65461.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1]
Length = 173
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 107/172 (62%), Gaps = 1/172 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
MV +A+ +I PFC+ FAA+SD+ S I NRVSI+++ SF + A L+GM I +H L+G
Sbjct: 1 MVEAAILVIFPFCMAFAAVSDMISLTIANRVSILLVLSFAVLAPLVGMPVAEIGMHFLLG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
V + F FA MGGGD KL+ ++AVWFG+ P + +L A+LGG L++ +++ R
Sbjct: 61 GTVLLATFAVFAIGGMGGGDAKLMAASAVWFGFNPGLMDYLLATALLGGALTLALVSFRR 120
Query: 126 ITNHIPIFGMFVPKSF-LMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+ + + F K+ IPYG+A+ +GGLI +P + L + A+ L+A
Sbjct: 121 SAFSPLVAHHVLLRHFAEEKSGIPYGVALGLGGLICFPQTPLMQWAMERLAA 172
>gi|90020508|ref|YP_526335.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Saccharophagus degradans 2-40]
gi|89950108|gb|ABD80123.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Saccharophagus degradans 2-40]
Length = 298
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 21/156 (13%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF----N 79
D+ ++P+ +++ +L LL D + + + G +V F F
Sbjct: 156 IDVDHQLLPDNITLPLLWLGLLANTQGHFTDLQSAVIGAVAGYLVLWSVFWLFKLVTGKE 215
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MG GD KLL + W GW + + A+ I G +
Sbjct: 216 GMGFGDFKLLAALGAWMGWQALPVIIILSSAV----------------GAIIGIGGILIF 259
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G +++ G I++ A + +
Sbjct: 260 GKDKNKPIPFGPYLAIAGWIAFFWGDAITGAYLSYA 295
>gi|325916235|ref|ZP_08178516.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
vesicatoria ATCC 35937]
gi|325537529|gb|EGD09244.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
vesicatoria ATCC 35937]
Length = 287
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 21/157 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
++ LV + DL ++P+++++ ++ L+ + L M + L VG +
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G L + + SV++
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILISSLVGAILGSVWLAAKGR-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G + +
Sbjct: 251 --------------DRATPIPFGPYLAIAGWVVFFWG 273
>gi|330960770|gb|EGH61030.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 290
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDTDHQLLPDSLVLPLLWLGLIVNSFRLFTSLSDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LTLWSVYWLFKLITGKEGMGHGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R + IP+G +++ G I+ + M +
Sbjct: 250 IRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|330966321|gb|EGH66581.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 290
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLMGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|254502136|ref|ZP_05114287.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia
alexandrii DFL-11]
gi|222438207|gb|EEE44886.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia
alexandrii DFL-11]
Length = 170
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 97/167 (58%), Gaps = 3/167 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + V ++ P + FA SDL + I NRVSI+++ F++ A + GM +H L
Sbjct: 1 MIEAVVLVLFPMLVAFAGASDLLTMKIGNRVSILLIIGFIVLAAVNGMPVNDWGMHGLGL 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++VF+ CF FFA MGGGDVKL++S +WFG+ P + FLF VA+LG +L++ ++ +R
Sbjct: 61 VVVFLPCFAFFAAGWMGGGDVKLISSVGLWFGFGPILIDFLFLVALLGCVLTLSLVVIRS 120
Query: 126 ---ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + + K+ IPYGIAIS LI YP S F +
Sbjct: 121 SLVVLPAPLRGQEWALRLHDAKSGIPYGIAISAAALIVYPRSDWFSM 167
>gi|261211522|ref|ZP_05925810.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
sp. RC341]
gi|260839477|gb|EEX66103.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
sp. RC341]
Length = 291
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A DL + ++P+++++ +L + A + + +
Sbjct: 128 VFAVALLFFSYVLIAATFIDLDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G +++ G +
Sbjct: 247 LRQQKKGIDM---------------AFPFGPYLAIAGWFALLWGE 276
>gi|30248611|ref|NP_840681.1| prepilin cysteine protease (C20), type IV [Nitrosomonas europaea
ATCC 19718]
gi|30180206|emb|CAD84508.1| Prepilin cysteine protease (C20), type IV [Nitrosomonas europaea
ATCC 19718]
Length = 286
Score = 85.7 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 21/169 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVF 69
L+ + ++ DL + ++P+ ++ +L + L+ G D + + G +
Sbjct: 133 AVLVFVWAMIVLTFIDLNTQLLPDSITQPLLWTGLIVNLNNGFTDVHSAVVGAVAGYLTL 192
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F MG GD KLL + W GW L LF + + +V IL
Sbjct: 193 WSVYWLFRLLTGKEGMGYGDFKLLAAIGAWLGWQLLPLVILFSSVVGAVVGTVLIL---- 248
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+G ++ GGLI+ A + +
Sbjct: 249 ------------SAGHSKNMTLPFGPYLAGGGLIALFWGKQINQAYLAM 285
>gi|254786984|ref|YP_003074413.1| type 4 prepilin-like protein leader peptide-processing enz
[Teredinibacter turnerae T7901]
gi|237683637|gb|ACR10901.1| Type 4 prepilin-like protein leader peptide-processing enz
[Teredinibacter turnerae T7901]
Length = 294
Score = 85.7 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 21/174 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
+ + + +CL+ + D+ ++P+ +++ +L LL L +D G
Sbjct: 134 LEGLLVAVFTWCLISLTMIDIDHKLLPDTITLPLLWLGLLANSGGLFVDLHSALYGAAAG 193
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW L + + I IL
Sbjct: 194 YLSLWSVYWVFKMLTGKEGMGFGDFKLLAALGAWMGWQMLPLVIILSSLVGAVIGIAGIL 253
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G +++ G I++ A + +
Sbjct: 254 IQGR----------------DKNVPIPFGPYLAIAGWIAFFWGDKITQAYLQFA 291
>gi|227823969|ref|YP_002827942.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234]
gi|227342971|gb|ACP27189.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234]
Length = 174
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 78/169 (46%), Positives = 110/169 (65%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + + +I PFCL AA SDLF+ IPNR+S ++L +F++ A L G I+LH+
Sbjct: 1 MTIACILVILPFCLALAAFSDLFTMTIPNRISAILLAAFIVVAPLAGFGMGEISLHIAAA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+VF++CFC FA ++MGGGD KLLT++AVWFG S + FL +V+I GG+L++ +L +R
Sbjct: 61 AVVFVVCFCLFAASVMGGGDAKLLTASAVWFGLDASLVDFLVYVSIFGGLLTLAVLLLRR 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
N I G+ VP+ L KIPYGIAI+MGG +YP S L + A
Sbjct: 121 QENAILASGIPVPQLLLTAKKIPYGIAIAMGGFAAYPSSPLMEAAFRAT 169
>gi|269101772|ref|ZP_06154469.1| leader peptidase (Prepilin peptidase)/N-methyltransferase
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268161670|gb|EEZ40166.1| leader peptidase (Prepilin peptidase)/N-methyltransferase
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 292
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 62/163 (38%), Gaps = 22/163 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ + F L+ D+ ++P+++++ +L + + A + + + + + G
Sbjct: 133 AVAVIFFTFALIALTFIDIDKMLLPDQITLPLLWAGIFLALLGISPVSLQDSVIGAIAGY 192
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F + MG GD KLL + W GW + ++ G I + +L
Sbjct: 193 LCLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGWQ-MLPVVVLLSSLAGAICGIILLK 251
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
V+ + P +G +++ G IS +
Sbjct: 252 VQKSDHQTPFS---------------FGPYLAIAGWISLLWGH 279
>gi|313200293|ref|YP_004038951.1| prepilin peptidase [Methylovorus sp. MP688]
gi|312439609|gb|ADQ83715.1| Prepilin peptidase [Methylovorus sp. MP688]
Length = 291
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 21/170 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + F L+ DL + ++P+ +++ +L LL G D G +
Sbjct: 137 TVFAWLFVFALIALTFIDLDTQLLPDDITLPLLWLGLLVNLNGGFTDLSSAVGGAAAGYL 196
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F MG GD KLL + WFGW + + ++ G ++ + ++
Sbjct: 197 ILWSIYWLFKLITGKEGMGYGDFKLLAAIGAWFGWQ-MLPAVILLSSLAGSVIGIGLILF 255
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
IP+G +++GG+ + +G
Sbjct: 256 AR---------------HGRSTPIPFGPYLALGGIAALFFGPTLASFYLG 290
>gi|253998221|ref|YP_003050284.1| Prepilin peptidase [Methylovorus sp. SIP3-4]
gi|253984900|gb|ACT49757.1| Prepilin peptidase [Methylovorus sp. SIP3-4]
Length = 291
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 21/170 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + F L+ DL + ++P+ +++ +L LL G D G +
Sbjct: 137 TVFAWLFVFALIALTFIDLDTQLLPDDITLPLLWLGLLVNLYGGFTDLSSAVTGAAAGYL 196
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F MG GD KLL + WFGW + + ++ G ++ + ++
Sbjct: 197 ILWSIYWLFKLITGKEGMGYGDFKLLAAIGAWFGWQ-MLPAVILLSSLAGSVIGIGLILF 255
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
IP+G +++GG+ + +G
Sbjct: 256 AR---------------HGRSTPIPFGPYLALGGIAALFFGPTLASFYLG 290
>gi|229521255|ref|ZP_04410675.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae TM 11079-80]
gi|229341787|gb|EEO06789.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae TM 11079-80]
Length = 291
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A D + ++P+++++ +L + A + + +V
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMV 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G +++ G +
Sbjct: 247 LRQQKKGIDM---------------AFPFGPYLAIAGWFALLWGD 276
>gi|254429932|ref|ZP_05043639.1| Bacterial Peptidase A24 N-terminal domain family [Alcanivorax sp.
DG881]
gi|196196101|gb|EDX91060.1| Bacterial Peptidase A24 N-terminal domain family [Alcanivorax sp.
DG881]
Length = 269
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 23/172 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
L + L+ AA+ D + ++P+ ++ +L + LL A + + + G
Sbjct: 112 LVFTLFATWLLLAAAMIDADTTLLPDSLNYWLLWTGLLAAVMGVSPVSLSDAVTGAMAGY 171
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +++G + ++ ++
Sbjct: 172 LSLWSVYWLFKLITGKEGMGYGDFKLLAALGAWVGWQY-LPVIILLSSVVGLVFAIAMMM 230
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
S + +IP+G ++ G I+ + +G+
Sbjct: 231 F----------------SGEKRTQIPFGPYLATAGWIALLWGDSIVSSYLGM 266
>gi|327484918|gb|AEA79325.1| Leader peptidase (Prepilin peptidase) [Vibrio cholerae LMA3894-4]
Length = 291
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A D + ++P+++++ +L + A + + +
Sbjct: 128 VFAVALLFFTYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G +++ G +
Sbjct: 247 LRQQKKGIDM---------------AFPFGPYLAIAGWFALLWGD 276
>gi|126665141|ref|ZP_01736124.1| Prepilin peptidase [Marinobacter sp. ELB17]
gi|126630511|gb|EBA01126.1| Prepilin peptidase [Marinobacter sp. ELB17]
Length = 291
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 21/142 (14%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF--- 78
+ D + ++P+ +++ +L L+ + + ++ +VG + + F
Sbjct: 148 TMIDFDTQLLPDSITLPLLWLGLMVNYFGQLVPFDEAFWGAIVGYLALWSVYWLFKLVTG 207
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GD KLL + W GWT + + +++G + + ++ +
Sbjct: 208 KEGMGYGDFKLLAALGAWLGWT-LLPAVILLSSVVGAAVGIALMVFKQQG---------- 256
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
+ IP+G ++ GL+
Sbjct: 257 -----REVPIPFGPYLATAGLM 273
>gi|229527032|ref|ZP_04416427.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae 12129(1)]
gi|229335429|gb|EEO00911.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae 12129(1)]
Length = 291
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A D + ++P+++++ +L + A + + +
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G +++ G +
Sbjct: 247 LRQQKKGIDMV---------------FPFGPYLAIAGWFALLWGD 276
>gi|120597345|ref|YP_961919.1| prepilin peptidase [Shewanella sp. W3-18-1]
gi|120557438|gb|ABM23365.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella sp. W3-18-1]
Length = 308
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ F L+ DL ++P+++++ +L LL + G
Sbjct: 152 QFVFASLLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAIIGAATGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++G ++ + ++
Sbjct: 212 LSLWSIFWVFKLLTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGAVVGIGMII 270
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMGL 174
+ M N IP+G I+ G I+ + L L
Sbjct: 271 SKRN---------------QMDNPIPFGPYIAAAGWIALVWGNPIIDWYLGTL 308
>gi|254291778|ref|ZP_04962563.1| leader peptidase PilD [Vibrio cholerae AM-19226]
gi|150422290|gb|EDN14252.1| leader peptidase PilD [Vibrio cholerae AM-19226]
Length = 291
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A D + ++P+++++ +L + A + + +
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G I++ G +
Sbjct: 247 LRQQKKGIDM---------------AFPFGPYIAIAGWFALLWGD 276
>gi|153214086|ref|ZP_01949220.1| leader peptidase PilD [Vibrio cholerae 1587]
gi|124115512|gb|EAY34332.1| leader peptidase PilD [Vibrio cholerae 1587]
Length = 291
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A D + ++P+++++ ++ + A + + +V
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLMWGGIALALLGFSPVSLSDAVIGAMV 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + ++ P+G +++ G +
Sbjct: 247 LRQQKKGINM---------------AFPFGPYLAIAGWFALLWGD 276
>gi|15642423|ref|NP_232056.1| leader peptidase PilD [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121587616|ref|ZP_01677380.1| leader peptidase PilD [Vibrio cholerae 2740-80]
gi|147675471|ref|YP_001217926.1| leader peptidase PilD [Vibrio cholerae O395]
gi|153802797|ref|ZP_01957383.1| leader peptidase PilD [Vibrio cholerae MZO-3]
gi|153818415|ref|ZP_01971082.1| leader peptidase PilD [Vibrio cholerae NCTC 8457]
gi|153824114|ref|ZP_01976781.1| leader peptidase PilD [Vibrio cholerae B33]
gi|227082547|ref|YP_002811098.1| leader peptidase PilD [Vibrio cholerae M66-2]
gi|229507514|ref|ZP_04397019.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae BX 330286]
gi|229512290|ref|ZP_04401769.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae B33]
gi|229519426|ref|ZP_04408869.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae RC9]
gi|229524411|ref|ZP_04413816.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae bv. albensis VL426]
gi|229607020|ref|YP_002877668.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae MJ-1236]
gi|254849549|ref|ZP_05238899.1| leader peptidase PilD [Vibrio cholerae MO10]
gi|255746903|ref|ZP_05420848.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholera CIRS 101]
gi|262161554|ref|ZP_06030664.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae INDRE 91/1]
gi|262168405|ref|ZP_06036102.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae RC27]
gi|298500216|ref|ZP_07010021.1| type IV-A prepilin peptidase PilD [Vibrio cholerae MAK 757]
gi|3025799|gb|AAC63504.1| type 4 prepilin peptidase VcpD [Vibrio cholerae]
gi|4455004|gb|AAD21032.1| type IV-A prepilin peptidase PilD [Vibrio cholerae]
gi|9657001|gb|AAF95569.1| leader peptidase PilD [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121548126|gb|EAX58199.1| leader peptidase PilD [Vibrio cholerae 2740-80]
gi|124121662|gb|EAY40405.1| leader peptidase PilD [Vibrio cholerae MZO-3]
gi|126511048|gb|EAZ73642.1| leader peptidase PilD [Vibrio cholerae NCTC 8457]
gi|126518363|gb|EAZ75586.1| leader peptidase PilD [Vibrio cholerae B33]
gi|146317354|gb|ABQ21893.1| leader peptidase PilD [Vibrio cholerae O395]
gi|227010435|gb|ACP06647.1| leader peptidase PilD [Vibrio cholerae M66-2]
gi|227014318|gb|ACP10528.1| leader peptidase PilD [Vibrio cholerae O395]
gi|229337992|gb|EEO03009.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae bv. albensis VL426]
gi|229344115|gb|EEO09090.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae RC9]
gi|229352255|gb|EEO17196.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae B33]
gi|229355019|gb|EEO19940.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae BX 330286]
gi|229369675|gb|ACQ60098.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae MJ-1236]
gi|254845254|gb|EET23668.1| leader peptidase PilD [Vibrio cholerae MO10]
gi|255735305|gb|EET90705.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholera CIRS 101]
gi|262023297|gb|EEY42001.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae RC27]
gi|262028865|gb|EEY47519.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae INDRE 91/1]
gi|297540909|gb|EFH76963.1| type IV-A prepilin peptidase PilD [Vibrio cholerae MAK 757]
Length = 291
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A D + ++P+++++ +L + A + + +
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G +++ G +
Sbjct: 247 LRQQKKGIDM---------------AFPFGPYLAIAGWFALLWGD 276
>gi|254473700|ref|ZP_05087095.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062]
gi|211957086|gb|EEA92291.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062]
Length = 170
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + + +I P L AA DLF+ IPN+++++++ +F+ AFLL + + + + +G
Sbjct: 1 MIANGLLIIFPLLLAVAAFFDLFTMTIPNKLNLLLVVAFVAMAFLLQLPLQQVGMSFALG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
V +I F FA +MGGGDVK L + ++W G + + L F+ +I GG L++ IL +R
Sbjct: 61 FGVMVIGFGLFALGVMGGGDVKFLAAISLWLGLSMNMLDFILLTSIYGGALTLVILALRK 120
Query: 126 IT--NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ ++ K K+ +PYGIAI++ G+ YP++ F
Sbjct: 121 VPYFPQFMHGQAWLLKLHDKKSGVPYGIAIAIAGIQVYPNTLWFS 165
>gi|330872528|gb|EGH06677.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 290
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QVAAILVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLSDALWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G +L V ++
Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
VR + IP+G +++ G I+ + M +
Sbjct: 250 VRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 287
>gi|297581050|ref|ZP_06942975.1| type IV-A prepilin peptidase PilD [Vibrio cholerae RC385]
gi|297534876|gb|EFH73712.1| type IV-A prepilin peptidase PilD [Vibrio cholerae RC385]
Length = 291
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF+ L + L+ A D + ++P+++++ +L + A + + +
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + I P+G +++ G +
Sbjct: 247 LCQQKKGIDI---------------AFPFGPYLAIAGWFALLWGD 276
>gi|114321230|ref|YP_742913.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Alkalilimnicola ehrlichii MLHE-1]
gi|114227624|gb|ABI57423.1| type 4 prepilin peptidase 1 [Alkalilimnicola ehrlichii MLHE-1]
Length = 293
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 55/173 (31%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
+A L+ + LV + DL ++P+ +++ +L + LL +G
Sbjct: 134 ETAAALLLTWTLVALSGIDLDHQLLPDSLTLPLLWAGLLVNSTGLFAELTDAVWGAALGY 193
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+V F F MG GD KLL + W GW L L + + I
Sbjct: 194 LVLWGVFHAFRLLTGKEGMGYGDFKLLAALGAWLGWQALPLIILLSSLVGAAVGIALIAL 253
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ IP+G I+ G I+ S
Sbjct: 254 KGR----------------GREVPIPFGPYIAAAGFITLLWGEALVHWYFRAS 290
>gi|114331043|ref|YP_747265.1| prepilin peptidase [Nitrosomonas eutropha C91]
gi|114308057|gb|ABI59300.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Nitrosomonas eutropha C91]
Length = 286
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
LI + ++ DL + ++P+ ++ +L + L+ G D + + G +
Sbjct: 131 LLAALIFIWAMIILTFIDLNTQLLPDSITQPLLWAGLIVNLHNGFVDIHSAVIGAVAGYL 190
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + W GW L L + I ++ IL
Sbjct: 191 TLWSVYWLFKLITGKEGMGYGDFKLLAAVGAWLGWQLLPLVILLSSVMGAAIGTILILAA 250
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+G ++ GGLI+ A + +
Sbjct: 251 NR----------------SKGTTLPFGPYLAGGGLIALFWGSQINQAYLAM 285
>gi|325981147|ref|YP_004293549.1| prepilin peptidase [Nitrosomonas sp. AL212]
gi|325530666|gb|ADZ25387.1| Prepilin peptidase [Nitrosomonas sp. AL212]
Length = 287
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + LI + L+ + DL + ++P+ +++ +L LL D + + VG
Sbjct: 130 LITIAALIFVWALITLTVIDLNTQLLPDDITLPLLWLGLLVNINNSFTDIQSAVIGAAVG 189
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL++ W GW+ + F +++G I+ + ++
Sbjct: 190 YLSLWSIYWCFKLITGKEGMGFGDFKLLSAIGAWLGWS-MLPLVILFSSLVGAIVGIGMI 248
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ +IP IP+G ++ G LI+ A GL
Sbjct: 249 VAAKLNKNIP---------------IPFGPYLAGGALIALFWGEKLNHAYFGL 286
>gi|302877537|ref|YP_003846101.1| Prepilin peptidase [Gallionella capsiferriformans ES-2]
gi|302580326|gb|ADL54337.1| Prepilin peptidase [Gallionella capsiferriformans ES-2]
Length = 288
Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 21/175 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + LI + L+ D + ++P+ +++ +L + LL L + G
Sbjct: 129 LTALAALILIWALIALTAIDFDTQLLPDDITLPLLWAGLLFNLYGAFTSLHDAFLGAVFG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F F MG GD KLL + W GW L + + I I+
Sbjct: 189 YLALWSVFWLFKLVTGKEGMGYGDFKLLAALGAWLGWQLLPLIIILSSLVGAIIGIALII 248
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
V+ + IP+G ++ GGLI+ + + L A
Sbjct: 249 AVKR----------------GREIPIPFGPYLAGGGLIALFWGQTLTQSYLQLLA 287
>gi|163751666|ref|ZP_02158886.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Shewanella benthica KT99]
gi|161328492|gb|EDP99647.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Shewanella benthica KT99]
Length = 303
Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
A + F L+ DL ++P+++++ +L LL + G
Sbjct: 147 EFACATLLTFVLMALTGIDLDEMLLPDQLTLPLLWFGLLINLNGTFTSGSDALIGAAAGY 206
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F + MG GD KLL WFGW L L + G ++ + ++
Sbjct: 207 LSLWSVFWAFKLLTGKDGMGYGDFKLLAVFGAWFGWQLLPLIILLSSIV-GAVVGIMLII 265
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ N IP+G I++ G I+ +
Sbjct: 266 SKK---------------LNHGNPIPFGPYIALAGWIAMIWGSDINAWYLST 302
>gi|146294510|ref|YP_001184934.1| prepilin peptidase [Shewanella putrefaciens CN-32]
gi|145566200|gb|ABP77135.1| Prepilin peptidase [Shewanella putrefaciens CN-32]
Length = 308
Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 21/162 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ F L+ DL ++P+++++ +L LL + G
Sbjct: 152 QFVFASLLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAIIGAAAGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++G ++ + ++
Sbjct: 212 LSLWSIFWVFKLLTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGAVVGIGMII 270
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ M N IP+G I+ G I+
Sbjct: 271 SKRN---------------QMDNPIPFGPYIAAAGWIALVWG 297
>gi|153827237|ref|ZP_01979904.1| leader peptidase PilD [Vibrio cholerae MZO-2]
gi|149738851|gb|EDM53187.1| leader peptidase PilD [Vibrio cholerae MZO-2]
Length = 291
Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF L + L+ A D + ++P+++++ +L + A + + +V
Sbjct: 128 VFGVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMV 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + ++ P+G +++ G +
Sbjct: 247 LRQQKKGINM---------------AFPFGPYLAIAGWFALLWGD 276
>gi|15887575|ref|NP_353256.1| components of type IV pilus, prepilin peptidase [Agrobacterium
tumefaciens str. C58]
gi|15155114|gb|AAK86041.1| components of type IV pilus, prepilin peptidase [Agrobacterium
tumefaciens str. C58]
Length = 170
Score = 84.5 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 81/169 (47%), Positives = 113/169 (66%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ +A+FLI P CL FAAL+DLFS IPN +++V+L SF A GMD++ L L G
Sbjct: 1 MIVAAIFLILPLCLCFAALNDLFSMTIPNVITVVLLLSFAFIAPFAGMDFQTFGLSLAGG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
LIVF+ CF FA N+MGGGD KLLT AVW+G+ S + FL V ++GG L+V IL +R
Sbjct: 61 LIVFLGCFALFAANVMGGGDAKLLTGAAVWYGFNISLVEFLLAVTLVGGALTVGILLLRS 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I FG+ +P S ++ KIPYGI I++ GL++Y ++ L K A+ +
Sbjct: 121 RSQEIMAFGIPIPDSLMVAQKIPYGIGIAIAGLLTYGEAPLVKAAIASI 169
>gi|153830662|ref|ZP_01983329.1| leader peptidase PilD [Vibrio cholerae 623-39]
gi|229514052|ref|ZP_04403514.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae TMA 21]
gi|254226638|ref|ZP_04920218.1| leader peptidase PilD [Vibrio cholerae V51]
gi|125620857|gb|EAZ49211.1| leader peptidase PilD [Vibrio cholerae V51]
gi|148873871|gb|EDL72006.1| leader peptidase PilD [Vibrio cholerae 623-39]
gi|229349233|gb|EEO14190.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
cholerae TMA 21]
Length = 291
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
VF L + L+ A D + ++P+++++ +L + A + + +
Sbjct: 128 VFGVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW + +++G I +
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ-LPVIVLLSSVVGVIFGLIQ 246
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + + P+G +++ G +
Sbjct: 247 LRQQKKGIDM---------------AFPFGPYLAIAGWFALLWGD 276
>gi|225024580|ref|ZP_03713772.1| hypothetical protein EIKCOROL_01457 [Eikenella corrodens ATCC
23834]
gi|224942731|gb|EEG23940.1| hypothetical protein EIKCOROL_01457 [Eikenella corrodens ATCC
23834]
Length = 285
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ LV D + ++P+++++ ++ LL + +G L +VG + +
Sbjct: 132 LVFTAVLVALTFIDADTQLLPDQLTLPLIWLGLLFNWQVGFVSLPSALLGAVVGYLSLWL 191
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F F MG GD KLL + W G + + +F A++G + ++ + +
Sbjct: 192 LFHLFKLITGKEGMGYGDFKLLAALGAWLGVS-TLPVIVFVAALVGLVAALVMRAAK--- 247
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
I +G A+++ G + + + +
Sbjct: 248 ----------------GQPIAFGPALAIAGWLVFAANSYILQGIQWW 278
>gi|319427875|gb|ADV55949.1| type IV prepilin peptidase, PilD [Shewanella putrefaciens 200]
Length = 308
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 21/162 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ F L+ DL ++P+++++ +L LL + G
Sbjct: 152 QFVFASLLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAIIGAAAGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++G ++ + ++
Sbjct: 212 LSLWSIFWVFKLLTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGAVVGIGMII 270
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ M N IP+G I+ G I+
Sbjct: 271 SKRN---------------QMDNPIPFGPYIAAAGWIALVWG 297
>gi|110833473|ref|YP_692332.1| leaderpeptidase and N-methyltransferase [Alcanivorax borkumensis
SK2]
gi|110646584|emb|CAL16060.1| Leaderpeptidase and N-methyltransferase [Alcanivorax borkumensis
SK2]
Length = 291
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 23/172 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
A L + L+ AA+ D + ++P+ ++ +L + LL A + + ++G
Sbjct: 134 LAFTLFATWVLLAAAMIDADTTLLPDTLNYWLLWAGLLAAVTGVSPVSLNDAVIGAMMGY 193
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + W GW + +I+G + ++ ++
Sbjct: 194 LSLWSIYWLFKLITGKEGMGYGDFKLLAALGAWVGWQY-LPVIILLSSIVGLVFAIAMMI 252
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
S + +IP+G ++ G I+ + +G+
Sbjct: 253 F----------------SGERRAQIPFGPYLATAGWIALLWGDSIVSSYLGM 288
>gi|119946931|ref|YP_944611.1| prepilin peptidase [Psychromonas ingrahamii 37]
gi|119865535|gb|ABM05012.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Psychromonas ingrahamii 37]
Length = 290
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 21/171 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
L+ + L+ D + ++P+ +++ +L LL D L + G +
Sbjct: 134 LLFALVFTWVLISLTFIDFDTMLLPDNLTLPLLWLGLLINISGTFTDISSAVLGAIFGYL 193
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + WFGW + + + G I+ + I+
Sbjct: 194 TLWSIYWGFKIVTGKEGMGYGDFKLLAALGAWFGWQ-ALPLIILLSSFSGAIIGIAIMLA 252
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+G +++ G + L
Sbjct: 253 SKDKQS---------------RPMPFGPYLAVAGWLFLVYGDRLTEIYYSL 288
>gi|116249979|ref|YP_765817.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254627|emb|CAK05701.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 170
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 80/169 (47%), Positives = 112/169 (66%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ +AVF+I P CL AA SDLF+ IPNR+S+++ SF + A L G+ I +HL
Sbjct: 1 MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISVILTASFFVLAPLSGLGLAEIGMHLAGA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
IVF CF FAFN+MGGGD KL+++ A+WFG S L + VA++GG++++ IL VR
Sbjct: 61 AIVFSACFALFAFNVMGGGDAKLMSAAALWFGLNESLLFLMTDVAMIGGLITLLILLVRG 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
++ I G+ VP S L+ KIPYGIAI++GG +++P S LF AL L
Sbjct: 121 QSDTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESL 169
>gi|146281443|ref|YP_001171596.1| type 4 prepilin peptidase PilD [Pseudomonas stutzeri A1501]
gi|145569648|gb|ABP78754.1| type 4 prepilin peptidase PilD [Pseudomonas stutzeri A1501]
Length = 289
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ ++ D+ ++P+ + + +L L+ F L E + G
Sbjct: 131 QAGAMLLLTWGLLAMSMIDVDHQLLPDSLVLPLLWLGLIANSFALFASLEDALWGAIAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL W GW L+ L + + S+ +
Sbjct: 191 LSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGAVLGSILLRV 250
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
R IP+G +++ G I+ + + +
Sbjct: 251 QR----------------AESSTPIPFGPYLAIAGWIALLWGDRITESYLQFA 287
>gi|262377011|ref|ZP_06070237.1| type IV pilus prepilin peptidase PilD [Acinetobacter lwoffii SH145]
gi|262308049|gb|EEY89186.1| type IV pilus prepilin peptidase PilD [Acinetobacter lwoffii SH145]
Length = 286
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 23/172 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI-ALHLLVG 65
+ LI + L+ D + ++P+R ++ + L ++G
Sbjct: 132 LQMLFGLILTYVLIALTFIDFDTQLLPDRYTLPLAALGLGVNSYALYTLPGAAIWGYIIG 191
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + F MG GD KLL + W G L L + G I+ + +L
Sbjct: 192 FLCLWVVYYAFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSLV-GAIIGIILL 250
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
VR +G I++ G I++ +G
Sbjct: 251 KVRK-----------------ENQPFAFGPYIAIAGWIAFLWGEQIMKVYLG 285
>gi|241207155|ref|YP_002978251.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861045|gb|ACS58712.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 170
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 85/169 (50%), Positives = 114/169 (67%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ +AVFLI P CL AA SDLF+ IPNR+S+++ SFL+ A G+ E+I +HL
Sbjct: 1 MIAAAVFLILPLCLAMAAFSDLFTMTIPNRISVILTASFLVLAPFSGLGLEMIGMHLAGA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
IVF CF FAFN+MGGGD KLL++TA+WFG S L + VA +GG++++ IL VR
Sbjct: 61 AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMTDVAAIGGLITLLILLVRT 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+N I G+ VP S L+ KIPYGIAI++GG +++P S LF AL L
Sbjct: 121 QSNTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESL 169
>gi|329912558|ref|ZP_08275773.1| Leader peptidase (Prepilin peptidase) [Oxalobacteraceae bacterium
IMCC9480]
gi|327545588|gb|EGF30756.1| Leader peptidase (Prepilin peptidase) [Oxalobacteraceae bacterium
IMCC9480]
Length = 288
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 21/151 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ L+ + L+ + D + ++P+ ++ +L LL + + G
Sbjct: 130 ITGLATLVFAWLLIAMSGIDADTQLLPDDLTYPLLWIGLLLNVNATFVPLGDAVIGAAAG 189
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW + +++G ++ V ++
Sbjct: 190 YLCLWSVYWVFKLLTGKEGMGYGDFKLLAALGAWLGWQ-MLPMIILLSSLVGALVGVSLI 248
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
+N IP+G
Sbjct: 249 VFGKRG---------------RENPIPFGPY 264
>gi|264676896|ref|YP_003276802.1| peptidase A24A-like protein [Comamonas testosteroni CNB-2]
gi|299529714|ref|ZP_07043151.1| peptidase A24A-like protein [Comamonas testosteroni S44]
gi|262207408|gb|ACY31506.1| peptidase A24A-like protein [Comamonas testosteroni CNB-2]
gi|298722577|gb|EFI63497.1| peptidase A24A-like protein [Comamonas testosteroni S44]
Length = 289
Score = 83.8 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIIC 72
L+ AL D + +P+ +++ +L + L+ + + + + G + +
Sbjct: 140 FSAALLALALIDWDTTFLPDSITLPLLWAGLIASALQWTSVPLQQSLWGAVAGYMSLWLI 199
Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F F MG GD KL + WFGW + + + +++G ++ + +
Sbjct: 200 FWAFKLATGKEGMGYGDFKLFAALGAWFGWQ-ALVPIILMASVVGAVIGIAL-------- 250
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ +P+G ++ GG +S ++ GL
Sbjct: 251 -------KINSKLREGGYVPFGPFLAGGGFVSLIWGPQAVLSFAGL 289
>gi|262374020|ref|ZP_06067297.1| type IV pilus prepilin peptidase PilD [Acinetobacter junii SH205]
gi|262311031|gb|EEY92118.1| type IV pilus prepilin peptidase PilD [Acinetobacter junii SH205]
Length = 286
Score = 83.8 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 23/175 (13%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHL 62
+ LI + L+ D + ++P+R ++ + L F +
Sbjct: 129 GATIQMLFGLILTWTLIALTFIDFDTQLLPDRFTLPLAALGLGINTFAIYTTASAAIWGF 188
Query: 63 LVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
L+G + I + F MG GD KLL + W G + +++G I+ +
Sbjct: 189 LIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGP-MMLPLIVLLSSMVGAIIGI 247
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ +R +G I++ G I++ +G
Sbjct: 248 MLMKMRG-----------------ENQPFAFGPYIAIAGWIAFLWGEQIMKVYLG 285
>gi|88811823|ref|ZP_01127076.1| Prepilin peptidase [Nitrococcus mobilis Nb-231]
gi|88790707|gb|EAR21821.1| Prepilin peptidase [Nitrococcus mobilis Nb-231]
Length = 305
Score = 83.8 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 21/165 (12%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFIICFC 74
+ L+ A DL ++P+ +++ L LL + + + + +VG +V +
Sbjct: 153 TWVLIALAGIDLDHQLLPDDLTLPALWLGLLLSLVPVFVPATTAIVGAVVGYLVLWSVYH 212
Query: 75 FFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F MG GD KLL W GW L + + + I +
Sbjct: 213 LFRWLTGKQGMGYGDFKLLGMLGAWLGWQALPLIVVLASVVGAAVGIALIAGLGR----- 267
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G ++ G I A + L+
Sbjct: 268 -----------HRDQPIPFGPFLAAAGWIYLLWGDELMPAYLALA 301
>gi|297537719|ref|YP_003673488.1| Prepilin peptidase [Methylotenera sp. 301]
gi|297257066|gb|ADI28911.1| Prepilin peptidase [Methylotenera sp. 301]
Length = 290
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 21/169 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ I F L+ D + ++P+ +++ +L LL G D + + + G +
Sbjct: 137 TLFAWIFTFALIALTFIDFDTQLLPDDITLPLLWLGLLLNLNNGFTDLKSAVIGAMAGYL 196
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F MG GD KLL + WFGW + + ++LG ++ + ++
Sbjct: 197 ILWSVYWAFKLVTGKEGMGYGDFKLLAALGAWFGWQ-LLPAVILLSSVLGAVIGISLIVF 255
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
IP +P+G +++GG+ + +
Sbjct: 256 TKRGREIP---------------MPFGPFLAIGGIAALFLGPQLASYYL 289
>gi|90416349|ref|ZP_01224281.1| type 4 prepilin-like proteins leader peptide processing enzyme
[marine gamma proteobacterium HTCC2207]
gi|90332074|gb|EAS47288.1| type 4 prepilin-like proteins leader peptide processing enzyme
[marine gamma proteobacterium HTCC2207]
Length = 299
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ +A L+ + L+ D ++P+++++ +L L + + L G
Sbjct: 140 LMAAYCLMFTWVLIALTGIDFREQLLPDQITLPLLWLGLFANLNGTFVPLNEAVVGALAG 199
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F F MG GD KLL + W GW L + + + +L
Sbjct: 200 YLSLWSVFWLFKLITGKEGMGYGDFKLLAALGAWMGWQMLPLIIILSTFVGALVGVAGLL 259
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + +G ++M G I+ + + +
Sbjct: 260 MNTR----------------ERQVPMAFGPFLAMAGWIALIWGDKILGSYLSV 296
>gi|312795077|ref|YP_004027999.1| Type 4 prepilin peptidase pilD [Burkholderia rhizoxinica HKI 454]
gi|312166852|emb|CBW73855.1| Type 4 prepilin peptidase pilD [Burkholderia rhizoxinica HKI 454]
Length = 330
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 22/154 (14%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFCFFAF-- 78
+ DL + ++P+ +++ +L + LL + + G + + F
Sbjct: 190 MSAIDLETKLLPDSLTLPLLWAGLLINLHAVFAPLDAAVIGAAAGYLSLWAVYWLFKLVR 249
Query: 79 --NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+G GD KL + WFGW+P L + L R
Sbjct: 250 GAEGIGYGDFKLFAAIGAWFGWSPLLQVILVASVCGAIVGLGATLAKR------------ 297
Query: 137 VPKSFLMKNKIPYGIAISMGGLIS-YPDSYLFKV 169
++ +P+G ++ +++ + + L+++
Sbjct: 298 ----MRLEEPLPFGPFLAGAAVLTLFGGTPLYRL 327
>gi|330828057|ref|YP_004391009.1| N-methyltransferase [Aeromonas veronii B565]
gi|328803193|gb|AEB48392.1| N-methyltransferase [Aeromonas veronii B565]
Length = 290
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ L+ + LV DL ++P+++++ +L LL G + + G +
Sbjct: 134 ALAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLASGFVPLADAVIGAMAGYL 193
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
V + F MG GD KLL + W GW + L +++G ++ + ++ +
Sbjct: 194 VLWSLYWAFKLLTSKEGMGYGDFKLLAALGAWLGWQ-ALPIILLLSSLVGAVIGISLIAL 252
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G +++ G I+ +
Sbjct: 253 QK---------------HHQGKPIPFGPYLAIAGWIALLWGDTITRWYLST 288
>gi|24372010|ref|NP_716052.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Shewanella oneidensis MR-1]
gi|24345871|gb|AAN53497.1|AE015489_10 type 4 prepilin-like proteins leader peptide processing enzyme
[Shewanella oneidensis MR-1]
Length = 308
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 22/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
I F L+ DL ++P+++++ +L LL + G
Sbjct: 152 QFVFAAILTFVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTSPADAMIGAAAGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW + +++G + + ++
Sbjct: 212 LSLWSIFWLFKLLTGKEGMGYGDFKLLAVFGAWLGWQ-MLPLVILLSSLVGAFVGITLIV 270
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMGL 174
+ N IP+G I+ G I+ + L L
Sbjct: 271 TKRNQLA---------------NPIPFGPYIAAAGWIALIWGQPIVDWYLSTL 308
>gi|222109981|ref|YP_002552245.1| prepilin peptidase [Acidovorax ebreus TPSY]
gi|221729425|gb|ACM32245.1| Prepilin peptidase [Acidovorax ebreus TPSY]
Length = 293
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE--LIALHLLV 64
+ +A + LV A D + ++P+ +++ +L + LL A L ++ + +
Sbjct: 132 LTTAAWCGFSAALVTLACIDWDTTLLPDDITLPLLWAGLLAAVLRWIEVQPVDAVIGAAA 191
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KL + WFGW L I +
Sbjct: 192 GYLSLWSVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILLASVIGAIVGIAMK 251
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + +P+G + GG+ +
Sbjct: 252 LA----------------STLREGKYVPFGPFLVGGGMAAMLWGP 280
>gi|222147184|ref|YP_002548141.1| component of type IV pilus prepilin peptidase protein
[Agrobacterium vitis S4]
gi|221734174|gb|ACM35137.1| component of type IV pilus prepilin peptidase protein
[Agrobacterium vitis S4]
Length = 172
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 76/170 (44%), Positives = 108/170 (63%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + LI P CL AA +DLF IPN + +V+L F A +LG+ L LHL G
Sbjct: 1 MLAVTLSLIMPLCLALAAFTDLFEMKIPNAIPLVLLIGFAALALVLGLPIGLAGLHLTAG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
LIVF CF FA N+MGGGD KLLT+ AVW+G+ S + FL VA+ GG+L++ IL +R
Sbjct: 61 LIVFFGCFTLFAVNVMGGGDAKLLTAAAVWYGFNISLVEFLIEVAMFGGVLTLMILALRS 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
N + G+ +P+S +++ KIPYGIAI++GG S+ + + +AL +S
Sbjct: 121 QANTVMALGLRLPRSLIVEKKIPYGIAIAIGGFCSFLSAPVVTLALATVS 170
>gi|255319719|ref|ZP_05360927.1| bacterial Peptidase A24 domain protein [Acinetobacter
radioresistens SK82]
gi|262379999|ref|ZP_06073154.1| type IV pilus prepilin peptidase PilD [Acinetobacter radioresistens
SH164]
gi|255303248|gb|EET82457.1| bacterial Peptidase A24 domain protein [Acinetobacter
radioresistens SK82]
gi|262298193|gb|EEY86107.1| type IV pilus prepilin peptidase PilD [Acinetobacter radioresistens
SH164]
Length = 286
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 23/176 (13%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALH 61
+ L+ + L+ D + ++P+R ++ + L
Sbjct: 128 YGPTLQMLFGLLLTWALITLTFIDFDTQLLPDRYTLPLAALGLALNSYALYTSASSAIWG 187
Query: 62 LLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
++G + I + F MG GD KLL + W G + +++G I+
Sbjct: 188 YVIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGP-LMLPLIVLLSSLVGAIIG 246
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +L +R +G I++ G I++ +G
Sbjct: 247 IVLLKIRK-----------------ENQPFAFGPYIAIAGWIAFLWGEQIMKIYLG 285
>gi|319761632|ref|YP_004125569.1| prepilin peptidase [Alicycliphilus denitrificans BC]
gi|330823498|ref|YP_004386801.1| Prepilin peptidase [Alicycliphilus denitrificans K601]
gi|317116193|gb|ADU98681.1| Prepilin peptidase [Alicycliphilus denitrificans BC]
gi|329308870|gb|AEB83285.1| Prepilin peptidase [Alicycliphilus denitrificans K601]
Length = 292
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 22/164 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE--LIALHLLVG 65
+ + LV AL D + ++P+ +++ +L + LL + L +D + + G
Sbjct: 132 TTLAWCGFCAALVALALIDWDTTLLPDDITLPLLWAGLLASVLRWIDVQPVDAVIGAAAG 191
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + F MG GD KL + WFGW L I +
Sbjct: 192 YVSLWLVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIVLMASVIGALVGIAM-- 249
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
S +P+G ++ GGL +
Sbjct: 250 --------------KFASSLREGKYVPFGPFLAGGGLAAMLWGP 279
>gi|91794739|ref|YP_564390.1| prepilin peptidase [Shewanella denitrificans OS217]
gi|91716741|gb|ABE56667.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella denitrificans OS217]
Length = 305
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 21/162 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
+ F L+ DL ++P+++++ +L LL + + G
Sbjct: 148 QFLFASLLTFVLIALTGIDLDEMLLPDQLTMPLLWLGLLINLQGVFTSPTDAIIGAIAGY 207
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L L + G ++ + ++
Sbjct: 208 MSLWSVFWLFKLVTGKEGMGYGDFKLLAVFGAWLGWQMLPLIILLSSLV-GAVVGIALIL 266
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ N IP+G I+M G I+
Sbjct: 267 SKK---------------LNQGNPIPFGPYIAMAGWIALIWG 293
>gi|1170761|sp|P45794|LEP4_AERHY RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|663118|gb|AAC43998.1| TapD [Aeromonas hydrophila]
gi|1588985|prf||2209417D leader peptidase IV
Length = 290
Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 21/166 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ L+ + LV DL ++P+++++ +L LL L G + + G +
Sbjct: 134 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYL 193
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
V + F MG GD KLL + W GW + L +++G + + ++ +
Sbjct: 194 VLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQ-ALPIVLLLSSLVGAFMGIGLILL 252
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
R IP+G +++ G I+
Sbjct: 253 RN---------------HHQSKPIPFGPYLAIAGWIALLWGDSITR 283
>gi|312883953|ref|ZP_07743670.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio caribbenthicus ATCC BAA-2122]
gi|309368411|gb|EFP95946.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio caribbenthicus ATCC BAA-2122]
Length = 289
Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGLIVFI 70
LI + L+ DL + ++P+++++ ++ + + + + L + G +
Sbjct: 134 LIFLYALITLLFIDLDTMLLPDQITLPLMWLGIALSLMEISPTSLQDSVLGAIFGYLSLW 193
Query: 71 ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ F MG GD KLL + W GW + +I+G +++ L ++
Sbjct: 194 SVYWMFKLATGKEGMGYGDFKLLAALGAWLGWQY-LPMIILCSSIVGVFMAIIQLALKGK 252
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ P+G +++ G I++
Sbjct: 253 ALN---------------QAFPFGPYLAISGWIAFTWGDEI 278
>gi|121593227|ref|YP_985123.1| type 4 prepilin peptidase 1 [Acidovorax sp. JS42]
gi|120605307|gb|ABM41047.1| type 4 prepilin peptidase 1 [Acidovorax sp. JS42]
Length = 293
Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 22/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE--LIALHLLV 64
+ +A + LV A D + ++P+ +++ +L + LL A L ++ + +
Sbjct: 132 LTTAAWCGFSAALVTLACIDWDTTLLPDDITLPLLWAGLLAAVLRWIEVQPVDAVIGAAA 191
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KL + WFGW L I +
Sbjct: 192 GYLSLWSVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILLASVIGAIVGIAMK 251
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + +P+G + GG+ +
Sbjct: 252 LA----------------STLREGKYVPFGPFLVGGGMAAMLWGP 280
>gi|307315789|ref|ZP_07595303.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
gi|307320424|ref|ZP_07599841.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
gi|306893990|gb|EFN24759.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
gi|306898557|gb|EFN29230.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
Length = 170
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 75/170 (44%), Positives = 108/170 (63%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + + ++ PF L AALSDL + IPNRVS+V+L SF A L G+D + LH +
Sbjct: 1 MINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHTVAA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++F + F FA N+MGGGD KLLT++A WFG+ S ++FL +V+ GG L++ +L +R
Sbjct: 61 GLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLLLRS 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
N I + VP+ L KIPYGIAI++GG +YP S L ++A LS
Sbjct: 121 KENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 170
>gi|83338438|gb|ABC11889.1| PilD [Aliivibrio fischeri]
Length = 295
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ ++ L+ D+ + ++P+++++ +L S L A + + + G
Sbjct: 133 FAVAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F MG GD KLL + W GW L L + I + +
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPLIILLSSVVGAIIGVIMLT 252
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + IP+G +++ G +
Sbjct: 253 AQKKGFD----------------KAIPFGPYLAIAGWVCLLWG 279
>gi|325291661|ref|YP_004277525.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp.
H13-3]
gi|325059514|gb|ADY63205.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp.
H13-3]
Length = 170
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 77/169 (45%), Positives = 110/169 (65%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
MV +A+FLI PFCL FAAL+DLFS IPNR+++ +L SF++ A GMD + A+ +
Sbjct: 1 MVIAAIFLILPFCLAFAALNDLFSMTIPNRITLFLLLSFIVVAPFSGMDLQTFAMSIAAA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
VF CF FA N MGGGD KLLT+ VW+G+ S + FL V +GG+L++ IL +R
Sbjct: 61 AAVFFACFILFAANAMGGGDAKLLTAVTVWYGFNISLIEFLLAVTFIGGVLTLGILLLRS 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I G+ +P S ++ KIPYGI I++ GL++Y ++ L K A+ L
Sbjct: 121 RSQEILAIGIPIPDSLMVVKKIPYGIGIAIAGLLTYGETPLVKAAIASL 169
>gi|322418888|ref|YP_004198111.1| Prepilin peptidase [Geobacter sp. M18]
gi|320125275|gb|ADW12835.1| Prepilin peptidase [Geobacter sp. M18]
Length = 274
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 69/172 (40%), Gaps = 21/172 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIV 68
A+ + LV DL +IP+ +++ + + +F + + + + ++ G
Sbjct: 119 AILFVFCSALVTITFIDLEHQIIPDVITLPGIVLGFILSFFIPQLGWLNSLIGIVGGGGS 178
Query: 69 FIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
++ + + MGGGDVKLL + GW + + +F ++LG ++ V ++ +R
Sbjct: 179 LLLIAWLYQVVAKKDGMGGGDVKLLAMMGAFLGWK-AIIFIVFVSSLLGSVIGVTLMVIR 237
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+ + IP+G ++ ++ + L +
Sbjct: 238 KKDSTL---------------AIPFGPFLASAAVLYIFYGRRIIHWYLTLGS 274
>gi|307943143|ref|ZP_07658488.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4]
gi|307773939|gb|EFO33155.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4]
Length = 169
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 104/165 (63%), Gaps = 2/165 (1%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + L PF ++ AA+SDL + IPN++SIV+ F L A ++G+ ++ I LHL G
Sbjct: 1 MLAIMSLAFPFLVIRAAVSDLLTMTIPNKISIVLCVLFALYAPIVGLGWQDIGLHLAGGA 60
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-- 124
+VF++CFC FA N MGGGD KLLT+ A+WFGW+ L+FLF A+ G +L++F++ +R
Sbjct: 61 VVFVVCFCMFAMNWMGGGDAKLLTAVALWFGWSADLLNFLFATAVFGMLLTLFLILIRPV 120
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
++ ++ K IPYG+AI+ G L+ YP S L+
Sbjct: 121 LVLPERLARIEWLTHLLHPKTGIPYGLAIAAGALLVYPTSPLYGA 165
>gi|7674109|sp|Q9ZEL6|LEP4_PSEST RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|4186118|emb|CAA10649.1| type 4 prepilin peptidase [Pseudomonas stutzeri]
Length = 289
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ ++ D+ ++P+ + + +L L+ F L E +VG
Sbjct: 131 QAGAMLLLTWGLLAMSMIDVDHQLLPDSLVLPLLWLGLIINSFGLFASLEDALWGAVVGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL W GW L+ L +++G +L +L
Sbjct: 191 LALWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILL-SSVVGAVLGTVMLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
++ IP+G +++ G ++ + + +
Sbjct: 250 MQKA---------------ESGTPIPFGPYLAIAGWVALLWGDQITASYLQFA 287
>gi|197335376|ref|YP_002156985.1| bacterial Peptidase A24 N-terminal domain family protein [Vibrio
fischeri MJ11]
gi|197316866|gb|ACH66313.1| bacterial Peptidase A24 N-terminal domain family protein [Vibrio
fischeri MJ11]
Length = 295
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ ++ L+ D+ + ++P+++++ +L S L A + + + G
Sbjct: 133 FAVAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F MG GD KLL + W GW L L + I + +
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPLLILLSSVVGAIIGVIMLT 252
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + IP+G +++ G +
Sbjct: 253 AQKKGFD----------------KAIPFGPYLAIAGWVCLLWG 279
>gi|315497467|ref|YP_004086271.1| peptidase a24a prepilin type IV [Asticcacaulis excentricus CB 48]
gi|315415479|gb|ADU12120.1| peptidase A24A prepilin type IV [Asticcacaulis excentricus CB 48]
Length = 171
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/164 (35%), Positives = 95/164 (57%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ + L+ P CLV+AA+SDL S IPNR+S+++ G F A L+G+ A+H+ +G
Sbjct: 2 LIPALFCLVYPACLVWAAVSDLRSMTIPNRLSLILAGVFFPAAVLMGLTPVGFAIHVGIG 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L + +I F FAF ++GGGD KLL +TA+WF ++ + GG + +L +
Sbjct: 62 LGILVIGFAAFAFKVLGGGDAKLLAATALWFHTDGVLAFLVYTALVGGGFTLLLLLARQT 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ ++P ++ K IPYG+AI GGL++ P S L+ +
Sbjct: 122 LQIYLPTLPQWLQTLLKPKGDIPYGVAICAGGLLAIPYSDLWPL 165
>gi|262370087|ref|ZP_06063414.1| leader peptidase [Acinetobacter johnsonii SH046]
gi|262315126|gb|EEY96166.1| leader peptidase [Acinetobacter johnsonii SH046]
Length = 286
Score = 82.2 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 23/172 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ L+ + L+ D + ++P+R ++ + L + ++G
Sbjct: 132 IQMLFGLVLTYILIALTFIDFDTQLLPDRYTLTLAALGLGVNSYAIYTTPTMAIWGYIIG 191
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ I + F MG GD KLL + W G L L + G I+ + +L
Sbjct: 192 FLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSFV-GAIIGIILL 250
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
VR +G I++ G I++ +G
Sbjct: 251 KVRK-----------------ENQPFAFGPYIAIAGWIAFLWGEQIMKIYLG 285
>gi|190889879|ref|YP_001976421.1| prepilin peptidase [Rhizobium etli CIAT 652]
gi|190695158|gb|ACE89243.1| prepilin peptidase protein [Rhizobium etli CIAT 652]
Length = 170
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 79/169 (46%), Positives = 111/169 (65%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + VF++ P CL AA SDLF+ IPNRVS++++ SFL+ A LG + I +HL
Sbjct: 1 MIATGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
IV CF FAFN+MGGGD KLL++TA+WFG S + VA +GG++++ IL VR
Sbjct: 61 AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+N I G+ +P S L+ KIPYGIAI++GG +++P S +F AL L
Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESL 169
>gi|29653511|ref|NP_819203.1| type 4 prepilin peptidase [Coxiella burnetii RSA 493]
gi|29540773|gb|AAO89717.1| type 4 prepilin peptidase [Coxiella burnetii RSA 493]
Length = 286
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ DL + ++P+ +++ L L + F + + ++G
Sbjct: 130 QALAGLLLTWVLIVLFFIDLKTQLLPDAITLPTLWFGLSLSLFYMFVSPYQAIFGAILGY 189
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ I F+ MG GD K+++ WFG L+ L LG I S +L
Sbjct: 190 GLLWITAAFYQLIRKKEGMGRGDFKMVSMLGAWFGP-GIVLNVLLLSVFLGLITSFMLLA 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ I +K IP+G I++ G IS + L+
Sbjct: 249 LKKI---------------SVKQPIPFGPFIAVAGWISLLSGPVLIHKLIS 284
>gi|153008057|ref|YP_001369272.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188]
gi|151559945|gb|ABS13443.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188]
Length = 174
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M +A+ I +V A ++DL S I NRVSI + F+L A G+ HL VG
Sbjct: 1 MTAAAMTAIFALAMVTAMITDLTSMTIRNRVSIGLTLGFVLLAPFCGISLADYGWHLAVG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
IV II F F MGGGD KL+ +TA+WFG S + ++ V+ILGG+L++ I+ RM
Sbjct: 61 GIVLIITFSLFCLRAMGGGDAKLIAATALWFGPNASLMDYIVMVSILGGVLTLTIILYRM 120
Query: 126 ITNHIPIFGMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYL 166
I + + K+ IPYGIA+ GL ++P S +
Sbjct: 121 IPRPLLADRYAFLGTLARKDVGIPYGIALGAAGLWTFPLSPV 162
>gi|56477899|ref|YP_159488.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Aromatoleum aromaticum EbN1]
gi|56313942|emb|CAI08587.1| type IV fimbrial biogenesis protein,prepilin cysteine protease
(C20) PilD [Aromatoleum aromaticum EbN1]
Length = 283
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVG 65
+ +A ++ + +V A DL + ++P+ +++ +L LL + + G
Sbjct: 126 LAAAGAMLFLWTMVALAFIDLDTQLLPDSLTLPLLWLGLLFNLDGTYSELPQAVVGAIAG 185
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW L+ LF +++G + + ++
Sbjct: 186 YLALWAVYWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLTILF-SSLVGAVTGLGLI 244
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
IP+G ++ G+++ +G
Sbjct: 245 VFAR---------------HGRDVPIPFGPYLAAAGVLALFWGEPLTQLYLG 281
>gi|162419051|ref|YP_001607609.1| prepilin peptidase [Yersinia pestis Angola]
gi|162351866|gb|ABX85814.1| type IV prepilin peptidase [Yersinia pestis Angola]
Length = 301
Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L A D + ++P+ ++I +L LL L + G + +
Sbjct: 150 LVLIWSLTALAFIDFDTYLLPDCMTIPLLWLGLLINIDTVFAPLTSAVLGAVSGYLFLWL 209
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG + LF ++F +
Sbjct: 210 SYWLFKIVRGVDGMGYGDFKLMAALGAWFGVSAVPFLILFSSFFGLVAYAIFYFFDKKDN 269
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
N I +G IS+ G++
Sbjct: 270 GKEI-------------NYIAFGPYISLAGVLYLFLG 293
>gi|85713503|ref|ZP_01044493.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A]
gi|85699407|gb|EAQ37274.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A]
Length = 174
Score = 81.8 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 79/164 (48%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ A L+ P + FAA SDL + I NRVS++++ FLL A L GM + H GL
Sbjct: 3 LDIARLLLFPALMAFAAASDLLTMTISNRVSLLLIAGFLLLAPLSGMGLHEMLSHAGAGL 62
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
V ++ F FA +GGGD K+ ++A+WFG+ + ++ G + + + +
Sbjct: 63 AVLVVAFSCFAMGWIGGGDAKVAAASALWFGFGHTLEYLVYASLFGGALTLLLLQFRQWP 122
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
++ + IPYGIA++ L+ YP++
Sbjct: 123 LPASLYSQDWLLRLHGRNAGIPYGIALAFAALLIYPETDWVSAV 166
>gi|75674501|ref|YP_316922.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255]
gi|74419371|gb|ABA03570.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255]
Length = 174
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 79/164 (48%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ A L+ P + FAA SDL + I NRVS++++ FL+ A L GM + H GL
Sbjct: 3 LDVARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVLAPLSGMGLHEMLSHAGAGL 62
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
V ++ F FA +GGGD K+ + A+WFG+ + ++ G + + + +
Sbjct: 63 AVLVVAFSCFAMGWVGGGDAKVAAAAALWFGFGHTLEYLVYASLFGGALTLLLLQFRQWP 122
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
++ + IPYGIA++ L+ YP++ +
Sbjct: 123 LPASLYGQDWLLRLHGKNTGIPYGIALAFAALLIYPETDWVRAV 166
>gi|257095697|ref|YP_003169338.1| prepilin peptidase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257048221|gb|ACV37409.1| Prepilin peptidase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 286
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+A ++ +CL+ DL + ++P+ +++ +L + LL D + G
Sbjct: 130 AAAGAMLLIWCLIALTCIDLDTLLLPDSITLPLLWAGLLFNLFGTFADLHSAVIGAASGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + + F MG GD KLL + WFGW L+ L + + I+
Sbjct: 190 LSLWLVYWGFKLTTGKEGMGYGDFKLLAALGAWFGWQMLPLTILLSSLLGAVVGIAMIVV 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G ++ G ++ A +GL
Sbjct: 250 AKR----------------GRSVPIPFGPYLAAAGGLALFWGKPLTRAYVGL 285
>gi|239833239|ref|ZP_04681568.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301]
gi|239825506|gb|EEQ97074.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301]
Length = 187
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
I +V A ++DL S I NRVSI + FLL A L G+ HL VG I II F
Sbjct: 22 IFALAMVTAMVTDLTSMTIRNRVSIGLTLGFLLLAPLCGISLSDFGWHLAVGGIALIITF 81
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
F MGGGD KL+ +TA+W+G PS + +L V+ILGG+L++ I+ RM+ +
Sbjct: 82 ALFCLRAMGGGDAKLIAATALWYGPDPSLMDYLVMVSILGGVLTLTIILYRMVPRPLLAD 141
Query: 134 GMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYL 166
+ K+ IPYGIA+ GL ++P + +
Sbjct: 142 RFAFMGTLARKDVGIPYGIALGAAGLWTFPLTPV 175
>gi|262166466|ref|ZP_06034203.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
mimicus VM223]
gi|262026182|gb|EEY44850.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
mimicus VM223]
Length = 288
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
F+ L+ + L+ A DL + ++P+++++ +L S + A + + + G
Sbjct: 129 FAVAALLFSYVLIAATFIDLDTMLLPDQLTLPLLWSGIALALFGLSPVSLTDAVIGSMAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW + L + + +
Sbjct: 189 YLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVVVLLSSVVGLLFGLIQLR 248
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + P+G +++ G I+
Sbjct: 249 LQKQGID----------------KAFPFGPYLAIAGWIALLWG 275
>gi|221133816|ref|ZP_03560121.1| prepilin peptidase [Glaciecola sp. HTCC2999]
Length = 311
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 64/173 (36%), Gaps = 15/173 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVG 65
+ + V ++ F L+ + D ++P+ +++ +L LL A + + + ++G
Sbjct: 145 IQTLVLIVVSFFLISMIMIDCKHLLLPDDLTLGLLWLGLLVAIWDVFIPLPDAIIGAMLG 204
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F + MG GD KLL + + GW + L + + +
Sbjct: 205 YLILWSIYWGFKLVTGKDGMGYGDFKLLAALGAFVGWYHLIIVILLASIVGLVLGLLIPQ 264
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R + ++ +P+G + + G ++ + +
Sbjct: 265 ITRKLPSNNGSIN----------QAVPFGPFLGIAGWLTIFYGDTIQRIYLQW 307
>gi|332991954|gb|AEF02009.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Alteromonas sp. SN2]
Length = 301
Score = 81.5 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
+ +I + L+ DL ++P+++++ +L L+ + + + G
Sbjct: 143 QAIWAVIFTYILIALIFIDLDKMLLPDQLTLPLLWLGLILSTQSIFVGPVDAIIGAAAGY 202
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD K+L + + GW + +I+G I + I+
Sbjct: 203 LSLWSVFWLFKIVTGKEGMGYGDFKILAALGAFTGWQG-LPIIILLSSIVGAIAGIAIMM 261
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD-----SYLFKVAL 171
+ + IP+G +++ G I+ ++ K AL
Sbjct: 262 FQNKGKSL---------------AIPFGPYLAVAGWITLFYKDSIITHYLKWAL 300
>gi|326318391|ref|YP_004236063.1| prepilin peptidase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323375227|gb|ADX47496.1| Prepilin peptidase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 295
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 22/153 (14%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICFCFF 76
LV A D + ++P+ +++ +L LL + + G + + F
Sbjct: 146 LVALACIDWDTTLLPDDITLPLLWGGLLASAFQWTSVPLFASVAGAAAGYLSLWAVYWAF 205
Query: 77 AF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
MG GD KL + WFGW + + + +++G ++ + +
Sbjct: 206 KLATGKEGMGHGDFKLFAALGAWFGWQ-ALVPIILMSSVIGALIGIGM------------ 252
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ IP+G ++ GL +
Sbjct: 253 ---KFTRGLREGGYIPFGPFLAGAGLAAMLFGP 282
>gi|327194696|gb|EGE61542.1| prepilin peptidase protein [Rhizobium etli CNPAF512]
Length = 170
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 79/169 (46%), Positives = 111/169 (65%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + VF++ P CL AA SDLF+ IPNRVS++++ SFL+ A LG + I +HL
Sbjct: 1 MIAAGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
IV CF FAFN+MGGGD KLL++TA+WFG S + VA +GG++++ IL VR
Sbjct: 61 AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+N I G+ +P S L+ KIPYGIAI++GG +++P S +F AL L
Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESL 169
>gi|118579418|ref|YP_900668.1| prepilin peptidase [Pelobacter propionicus DSM 2379]
gi|118502128|gb|ABK98610.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Pelobacter propionicus DSM 2379]
Length = 261
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 21/174 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ AV + LV DL +IP+ +S+ + + +F L L +L ++
Sbjct: 100 LAFAVLFLFCSALVVITFIDLEHQIIPDEISLPGIVLGFIFSFFLRGHGWLNSLLGILLG 159
Query: 67 I-----VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V MGGGD+KLL + GW S +F ++ G ++ V ++
Sbjct: 160 GGSLLLVAYGYQLVTGKEGMGGGDIKLLAMMGAFLGWK-SIPFIIFVSSLAGSVIGVSLM 218
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
++ K IP+G +++G L+ + L
Sbjct: 219 LIQKK---------------DSKLAIPFGPYLALGALLYVFYGPRLISWYLTLG 257
>gi|90425195|ref|YP_533565.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
BisB18]
gi|90107209|gb|ABD89246.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
BisB18]
Length = 174
Score = 81.1 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 83/165 (50%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ L+ P + FAA SDLF+ I NRVS++++ FL A L GM + I H+ G
Sbjct: 2 MLDLLRVLLFPALMAFAAASDLFTMTISNRVSLLLIVGFLALAGLGGMGLQEILSHIAAG 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
V I F FAF +GGGD K+ ++ A+WFG+ ++ G + + + +
Sbjct: 62 GSVLAIAFACFAFGWVGGGDAKVASAAALWFGFDHLLEYLVYASLFGGALTLLLLQFRQW 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ ++ + + IPYGIA++ G L+ YP++ +
Sbjct: 122 PLPYALCGQPWLLRLHAKETGIPYGIALATGALMIYPETEWIRAV 166
>gi|237807311|ref|YP_002891751.1| Prepilin peptidase [Tolumonas auensis DSM 9187]
gi|237499572|gb|ACQ92165.1| Prepilin peptidase [Tolumonas auensis DSM 9187]
Length = 286
Score = 81.1 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 21/158 (13%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFCFFAF---- 78
D ++P+++++ +L LL + + + G +V + F
Sbjct: 145 FIDFDKLLLPDQLTLPLLWVGLLLNLSHQFVPLADAVIGAIAGYMVLWSIYWAFKLLTGK 204
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
MG GD KLL + W GW S L + +G IL + ++ +R
Sbjct: 205 EGMGYGDFKLLAALGAWLGWQ-SLPLILILSSCVGAILGITLVVMRR------------- 250
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+P+G +++ G I+ +GL +
Sbjct: 251 --HQQSKPMPFGPYLAIAGWIALLWGEQLTNWYLGLLS 286
>gi|22127071|ref|NP_670494.1| prepilin peptidase [Yersinia pestis KIM 10]
gi|45442617|ref|NP_994156.1| prepilin peptidase [Yersinia pestis biovar Microtus str. 91001]
gi|21960124|gb|AAM86745.1|AE013920_9 putative type IV prepilin peptidase [Yersinia pestis KIM 10]
gi|45437482|gb|AAS63033.1| putative type IV prepilin peptidase [Yersinia pestis biovar
Microtus str. 91001]
Length = 304
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L A D + ++P+ ++I +L LL L + G + +
Sbjct: 153 LVLIWSLTALAFIDFDTYLLPDCMTIPLLWLGLLINIDTVFAPLTSAVLGAVSGYLFLWL 212
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG + LF ++F +
Sbjct: 213 SYWLFKIVRGVDGMGYGDFKLMAALGAWFGVSAVPFLILFSSFFGLVAYAIFYFFDKKDN 272
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
N I +G IS+ G++
Sbjct: 273 GKEI-------------NYIAFGPYISLAGVLYLFLG 296
>gi|39936738|ref|NP_949014.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris CGA009]
gi|192292564|ref|YP_001993169.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1]
gi|39650594|emb|CAE29117.1| putative type IV prepilin peptidase, cpaA [Rhodopseudomonas
palustris CGA009]
gi|192286313|gb|ACF02694.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1]
Length = 174
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 79/157 (50%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ P + FAA SDL + I NR+S++++ FL+ A L G+ I LH G +V + F
Sbjct: 10 LFPALMAFAATSDLLTMTISNRISLLLVAGFLVLAPLTGLGAYDILLHFGAGALVLAVAF 69
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
FA +GGGD K++ + A+WFG+ L+ G + + + + +
Sbjct: 70 GCFAMGWIGGGDAKVVAAAALWFGFDHLLDYLLYASLFGGALTLLLLGFRQWPLPYRLAC 129
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+V + + IPYGIA++MG L+ YP + K
Sbjct: 130 QGWVLRLHDQQTGIPYGIALAMGALVIYPHTEWIKAV 166
>gi|229588336|ref|YP_002870455.1| type IV prepilin-like proteins leader peptide processing enzyme
[Pseudomonas fluorescens SBW25]
gi|229360202|emb|CAY47059.1| type IV prepilin-like proteins leader peptide processing enzyme
[Pseudomonas fluorescens SBW25]
Length = 288
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 21/170 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ L + ++G
Sbjct: 129 QAGAMLVLSWGLLAMSLIDADHQLLPDALVMPLLWLGLIVNALGLLTTLPDALWGAVIGY 188
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F + MG GD KLL W GW L +++G + + ++
Sbjct: 189 MSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQ-ILPMTLLISSLVGVFVGLILMR 247
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+R +P+G +++ G I+ +
Sbjct: 248 LRKARAS---------------TPMPFGPYLAIAGWIALLWGGQITDFYL 282
>gi|71064643|ref|YP_263370.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Psychrobacter arcticus 273-4]
gi|71037628|gb|AAZ17936.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Psychrobacter arcticus 273-4]
Length = 299
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 23/167 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
LI + LV D + ++P+R++ + G L LL+G + I
Sbjct: 149 LILVWTLVVLTGIDFDTQLLPDRLTFPLAGLGLAVNSQGWFVSPTQSIWGLLLGFLSLWI 208
Query: 72 ----CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + MG GD KLL W G + ++LG I+ + ++ +
Sbjct: 209 VVKIFYLITKKHGMGQGDFKLLAVLGAWLGP-VMLPLVILLSSLLGSIVGLILIKKQG-- 265
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G I++ G+++ +G+
Sbjct: 266 ---------------ESKPFAFGPYIAIAGIVALLYGSDIVNWYLGM 297
>gi|109810283|gb|ABC11892.2| PilD [Aliivibrio fischeri]
Length = 295
Score = 80.7 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 22/163 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ ++ L+ D+ + ++P ++++ +L S L A + + + G
Sbjct: 133 FAXAAVLFTLVLIALTFIDIDTMLLPEQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F MG GD KLL + W GW L L + I + +
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPLXILLSSVVGAIIGVIMLT 252
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + IP+G +++ G +
Sbjct: 253 AQKKGFD----------------KAIPFGPYLAIAGWVCLLWG 279
>gi|88801097|ref|ZP_01116644.1| Prepilin cysteine protease (C20), type IV [Reinekea sp. MED297]
gi|88776176|gb|EAR07404.1| Prepilin cysteine protease (C20), type IV [Reinekea sp. MED297]
Length = 291
Score = 80.7 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 59/164 (35%), Gaps = 21/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVG 65
+ + ++ + ++ + D + ++P+ +++ +L + LL + + + G
Sbjct: 133 LEAFALIVFMWLMISLTMIDFDTHLLPDSMTLPLLWAGLLLNLNDTFVSINDSVIGAVAG 192
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL + WFGW + + +++G ++ + ++
Sbjct: 193 YLTLWSVYWLFKLTTGKEGMGFGDFKLFAAFGAWFGW-IALPMIILLSSLVGAVVGITMI 251
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ IP+G + ++
Sbjct: 252 L---------------ALGRDRQIPIPFGPYLCGAAVVYIFWGE 280
>gi|332142398|ref|YP_004428136.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Alteromonas macleodii str. 'Deep ecotype']
gi|327552420|gb|AEA99138.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Alteromonas macleodii str. 'Deep ecotype']
Length = 297
Score = 80.7 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 21/160 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
+ ++ + LV DL ++P+++++ +L LL + + + G
Sbjct: 140 QALWAVVFTYVLVALLFIDLDKMLLPDQLTLPLLWLGLLLSTQNIFVGTTDAIIGATAGY 199
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + + GW + +++G I + I+
Sbjct: 200 LSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTGWQG-LPVIILLSSLVGAIAGIAIMV 258
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
V+ + IP+G +++ G ++
Sbjct: 259 VQNKGKSL---------------AIPFGPYLAVAGWLTLL 283
>gi|262273801|ref|ZP_06051614.1| leader peptidase (Prepilin peptidase)/N-methyltransferase
[Grimontia hollisae CIP 101886]
gi|262222216|gb|EEY73528.1| leader peptidase (Prepilin peptidase)/N-methyltransferase
[Grimontia hollisae CIP 101886]
Length = 289
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 22/165 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
S + F LV DL + ++P+++++ ++ + +L A + + + + G
Sbjct: 130 SLAVIGATFVLVVLCFIDLDTLLLPDQMTLPLMWAGMLLALTGLSPVSLQDAVIGAMAGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL + W GW + + +++G I + +
Sbjct: 190 LSLWSVFQLFKLLTGKEGMGYGDFKLLAALGAWLGWQ-ALPMVILMASMVGAIGGIITMR 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
V+ + +G +++ G IS +
Sbjct: 249 VKGTG---------------KETPFSFGPYLAIAGWISLLWGNMI 278
>gi|197117919|ref|YP_002138346.1| type IV prepilin-like proteins leader peptide processing enzyme
[Geobacter bemidjiensis Bem]
gi|197087279|gb|ACH38550.1| type IV prepilin-like proteins leader peptide processing enzyme
[Geobacter bemidjiensis Bem]
Length = 274
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 67/172 (38%), Gaps = 21/172 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIV 68
V + LV DL +IP+ +++ + + +F + + + + +L G
Sbjct: 119 GVLFVFCSALVVVTFIDLEHQIIPDAITLPGIVAGFAASFFIPQLGWLNSLIGILAGGGS 178
Query: 69 FIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + + MGGGD+KLL + GW + L +F +++G ++ V ++ R
Sbjct: 179 LFLVAYIYQAIAKKDGMGGGDIKLLAMMGAFLGWK-AILFIIFTASLIGSVIGVSVMLAR 237
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+ + IP+G ++ G ++ + + +
Sbjct: 238 KENSSL---------------AIPFGPFLASGAVLYIFYGNRIIHWYLSMGS 274
>gi|220933965|ref|YP_002512864.1| type IV pilus prepilin peptidase PilD [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995275|gb|ACL71877.1| type IV pilus prepilin peptidase PilD [Thioalkalivibrio sp.
HL-EbGR7]
Length = 288
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
S L+ + L+ A+ DL + ++P+ +++ L LL D + + G
Sbjct: 134 QSGAALLLTWALIALAVIDLRTTLLPDSITLPFLWIGLLLNLGGLFTDATSSLIGAVAGY 193
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + + F MG GD KL W GW + +++G ++ + ++
Sbjct: 194 LSLWLVYHGFKLLTGKEGMGFGDFKLFALIGAWLGWQ-LLPLVILLSSLVGAVVGIALIL 252
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
R + +P+G ++ G I+ +G
Sbjct: 253 FRGR---------------DRAHPMPFGPYLAAAGWIALLWGNDIMALYLG 288
>gi|86355862|ref|YP_467754.1| prepilin peptidase protein [Rhizobium etli CFN 42]
gi|86279964|gb|ABC89027.1| prepilin peptidase protein [Rhizobium etli CFN 42]
Length = 170
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 87/169 (51%), Positives = 114/169 (67%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ +AVF+I P CL AA SDLF+ IPNR+S++++ SFL A G+ + I HL G
Sbjct: 1 MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISLILVVSFLALAPFFGLGLQAIGTHLAAG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
IVF CF FAFN+MGGGD KLLT+TA+WFG S L + VAI+GG+L++ IL VR
Sbjct: 61 AIVFAACFALFAFNVMGGGDAKLLTATALWFGLNESLLFLMTDVAIIGGLLTLLILLVRG 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+N I G+ VP S L+ KIPYGIAI++GG +++P S LF AL L
Sbjct: 121 QSNTILAIGLPVPNSLLLAKKIPYGIAIAIGGFMAFPSSPLFIAALESL 169
>gi|254480296|ref|ZP_05093544.1| Bacterial Peptidase A24 N-terminal domain family [marine gamma
proteobacterium HTCC2148]
gi|214039858|gb|EEB80517.1| Bacterial Peptidase A24 N-terminal domain family [marine gamma
proteobacterium HTCC2148]
Length = 288
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 21/165 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
+ + LV + D+ ++P+ +++ +L LL + + + G ++
Sbjct: 134 MFLTWSLVALTMIDVDHQLLPDDITLPLLWLGLLFNLNGTYVTLGDAVIGAMAGYLILWS 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W GW + + +++G ++ + ++ ++
Sbjct: 194 VYWVFKLITGKEGMGYGDFKLLAALGAWMGWQ-ALPLIILLSSLVGAVVGIGLMILKNRG 252
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
IP IP+G ++ G IS L A +
Sbjct: 253 KEIP---------------IPFGPYLAAAGWISLLWGDLITEAYL 282
>gi|319785610|ref|YP_004145086.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171498|gb|ADV15036.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 172
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 1/172 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + +F++ PFC++FAA+SD+ S I NRV ++++ F L A L GMD+ H G
Sbjct: 1 MLEALIFVVFPFCMLFAAISDMLSMTIANRVPVLLVVVFALVAPLTGMDWAAYGGHFAAG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+V + F FA MGGGD KLL +TA+W G + + +L I+GG+L++ I+ R
Sbjct: 61 ALVLAVTFGLFAIGGMGGGDAKLLAATAMWMGLNVNLVEYLVASTIIGGLLTLAIILYRK 120
Query: 126 ITNHIPIFGMFVPKSF-LMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+ F +PYG+A+ +GGL++YPDS L AL L+A
Sbjct: 121 SMLAAVTGQNPFLRHFADEAKGVPYGVALGLGGLLTYPDSPLMIWALARLAA 172
>gi|289209346|ref|YP_003461412.1| prepilin peptidase [Thioalkalivibrio sp. K90mix]
gi|288944977|gb|ADC72676.1| Prepilin peptidase [Thioalkalivibrio sp. K90mix]
Length = 296
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 21/171 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + LI L+ AA D + ++P+++++ +L LL D + + G
Sbjct: 138 TTALLALIFTGVLIAAAGIDARTTLLPDQLTLPLLWLGLLVNIPGTFTDLQSAVIGAAAG 197
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + F F MG GD KLL + W GW + L +++G ++ + ++
Sbjct: 198 YLVLWLIFHGFRLATGKEGMGYGDFKLLAALGAWLGWQ-ALPVILLLASLVGAVVGILLI 256
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+R +IP IP+G ++ G ++
Sbjct: 257 LLRGRDRNIP---------------IPFGPYLAAAGWLALIWGDTLVAFYF 292
>gi|89095465|ref|ZP_01168375.1| type 4 prepilin peptidase PilD [Oceanospirillum sp. MED92]
gi|89080268|gb|EAR59530.1| type 4 prepilin peptidase PilD [Oceanospirillum sp. MED92]
Length = 280
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 21/169 (12%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFI 70
+ F L+ D+ ++P+ +++ +L LL F + E + G +
Sbjct: 126 LALLTFALICLVFIDIDHQLLPDSITLPLLWLGLLVNSFNIFTSLESAVYGAIAGYLSLW 185
Query: 71 ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ F MG GD KLL + W G + L L + G I + ++ +
Sbjct: 186 SVYWAFKLLTGKEGMGYGDFKLLAALGAWAGLSQLPLIILLSSLV-GAIFGIAMIVTKKN 244
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ IP+G +++ G I+ + +
Sbjct: 245 ---------------ESQQPIPFGPYLAIAGWIAILWGDQITGMYLKFA 278
>gi|51597369|ref|YP_071560.1| prepilin peptidase [Yersinia pseudotuberculosis IP 32953]
gi|186896477|ref|YP_001873589.1| peptidase A24A domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|51590651|emb|CAH22293.1| Prepilin peptidase [Yersinia pseudotuberculosis IP 32953]
gi|186699503|gb|ACC90132.1| peptidase A24A domain protein [Yersinia pseudotuberculosis PB1/+]
Length = 280
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L A D + ++P+ ++I +L LL L + G + +
Sbjct: 129 LVLIWSLTALAFIDFDTYLLPDCMTIPLLWLGLLINIDTVFAPLTSAVLGAVSGYLFLWL 188
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG + LF ++F +
Sbjct: 189 SYWLFKIVRGVDGMGYGDFKLMAALGAWFGVSAVPFLILFSSFFGLVAYAIFYFFDKKDN 248
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
N I +G IS+ G++
Sbjct: 249 GKEI-------------NYIAFGPYISLAGVLYLFLG 272
>gi|319944673|ref|ZP_08018940.1| prepilin peptidase [Lautropia mirabilis ATCC 51599]
gi|319742112|gb|EFV94532.1| prepilin peptidase [Lautropia mirabilis ATCC 51599]
Length = 305
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 23/170 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLV 64
V I LV D + ++P+ +++ +L LL + +
Sbjct: 139 VTGIAAAIFCCVLVALTFIDYDTQLLPDSLTLPLLWGGLLLNLTSHGMAPLPDAVIGAMT 198
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + WFGW + + + +++G ++ + +
Sbjct: 199 GYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWFGWQ-ALPAIILMSSVIGAVVGISL 257
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS-YPDSYLFKV 169
+ + IP+G ++ GL + +
Sbjct: 258 IFFKG---------------HGRSQPIPFGPYLAGAGLAMLFLGGQVMTW 292
>gi|154706385|ref|YP_001425263.1| type 4 prepilin peptidase [Coxiella burnetii Dugway 5J108-111]
gi|154355671|gb|ABS77133.1| type 4 prepilin peptidase [Coxiella burnetii Dugway 5J108-111]
Length = 286
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ DL + ++P+ +++ L L + F + + ++G
Sbjct: 130 QALAGLLLTWVLIVLFFIDLKTQLLPDAITLPTLWFGLSLSLFYMFVSPYQAIFGAILGY 189
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ I F+ MG GD K+++ WFG L+ L LG I S +L
Sbjct: 190 GLLWITAAFYQLIRKKEGMGRGDFKMVSMLGAWFGP-GIVLNVLLLAVFLGLITSFMLLA 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ I +K IP+G I++ G IS + L+
Sbjct: 249 LKKI---------------SVKQPIPFGPFIAVAGWISLLSGPVLIHKLIS 284
>gi|118589701|ref|ZP_01547106.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614]
gi|118437787|gb|EAV44423.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614]
Length = 168
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
MV +A+ +I P + F SDL + I NRVS++++ F + A G+ + +H L
Sbjct: 1 MVQAAILVIFPMLVAFGGASDLLTMTIQNRVSLLLIAGFAILAVATGLPLQAWGMHALAF 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+VF CF FFAF MGGGDVK +++ A+W G++ L F+ FVAI G L+ +L +R
Sbjct: 61 AVVFAPCFLFFAFGWMGGGDVKFISAIALWIGFSQELLMFVLFVAIYGMFLTFGLLIMRQ 120
Query: 126 IT--NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + + + K+ IPYGIAI++ GL Y +Y F +
Sbjct: 121 QSVVPSVLYRQEWFARLHDSKSGIPYGIAIAIAGLQVYSSTYWFDL 166
>gi|87312295|ref|ZP_01094393.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula
marina DSM 3645]
gi|87284999|gb|EAQ76935.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula
marina DSM 3645]
Length = 238
Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 17/182 (9%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
+ M + L+ AA+ D F +PN ++ + + + + +E + +
Sbjct: 58 GASMAEHWPVWVVTVTLIVAAVIDGFQLKVPNWITFPFIIAGWTYSVIA-FGWEGLGWSM 116
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
L ++ + +A MG GDVKLL W T +F +F + + +L
Sbjct: 117 LGTVVGLALLLPAYAIGGMGAGDVKLLAGVGAWMYGTHTFYAFCISAVVGAVLAIGMVLF 176
Query: 123 VRMITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLISYPDSYL 166
H M + + +++ +PYGI I++G + + +
Sbjct: 177 RGAWEKHSNQAWMILNEILTIRDPNQLSAIAAERKPTMMLLPYGIPIAIGSIAYFIWMGM 236
Query: 167 FK 168
Sbjct: 237 LV 238
>gi|253701289|ref|YP_003022478.1| prepilin peptidase [Geobacter sp. M21]
gi|251776139|gb|ACT18720.1| Prepilin peptidase [Geobacter sp. M21]
Length = 274
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 67/175 (38%), Gaps = 21/175 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
+ + LV DL +IP+ +++ + +F + + + + ++ G
Sbjct: 116 LIFGTLFVFCSALVVVTFIDLEHQIIPDAITLPGIVVGFAASFFIPQLGWLNSLIGIVAG 175
Query: 66 LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + + MGGGD+KLL + GW + + +F +++G ++ V ++
Sbjct: 176 GGSLLLIAYVYQAVAKKDGMGGGDIKLLAMMGAFLGWK-AIIFIIFTASLIGSVIGVSVM 234
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
R + + IP+G ++ G ++ + + +
Sbjct: 235 LARKENSSL---------------AIPFGPFLASGAILYIFYGNRIIHWYLSMGS 274
>gi|304415278|ref|ZP_07395973.1| type IV prepilin peptidase [Candidatus Regiella insecticola LSR1]
gi|304282868|gb|EFL91336.1| type IV prepilin peptidase [Candidatus Regiella insecticola LSR1]
Length = 271
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 22/155 (14%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIV 68
LI + L+ A DL ++P+ +++ +L LL + VG +
Sbjct: 121 IAALILAWSLIVLAFIDLDKRILPDCITLPLLWCGLLVNVEGMFTSLSSAVIGATVGYLF 180
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F + + MG GD KL+ + WFGW F + LG I + +
Sbjct: 181 FWLTYWLIKKLTGKEGMGYGDFKLMAALGAWFGWE-IIPFLTFISSFLGIIGYISLRIFT 239
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
ITN I +G +++ G++
Sbjct: 240 KITN----------------KSIAFGPYLAISGIV 258
>gi|165924962|ref|ZP_02220794.1| type IV prepilin peptidase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165937380|ref|ZP_02225944.1| type IV prepilin peptidase [Yersinia pestis biovar Orientalis str.
IP275]
gi|166010322|ref|ZP_02231220.1| type IV prepilin peptidase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166212667|ref|ZP_02238702.1| type IV prepilin peptidase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167399807|ref|ZP_02305325.1| type IV prepilin peptidase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167419171|ref|ZP_02310924.1| type IV prepilin peptidase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167425384|ref|ZP_02317137.1| type IV prepilin peptidase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|294503010|ref|YP_003567072.1| prepilin peptidase [Yersinia pestis Z176003]
gi|165914854|gb|EDR33467.1| type IV prepilin peptidase [Yersinia pestis biovar Orientalis str.
IP275]
gi|165923162|gb|EDR40313.1| type IV prepilin peptidase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990808|gb|EDR43109.1| type IV prepilin peptidase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166205959|gb|EDR50439.1| type IV prepilin peptidase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166963165|gb|EDR59186.1| type IV prepilin peptidase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050515|gb|EDR61923.1| type IV prepilin peptidase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167055784|gb|EDR65568.1| type IV prepilin peptidase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|262361046|gb|ACY57767.1| prepilin peptidase [Yersinia pestis D106004]
gi|262364990|gb|ACY61547.1| prepilin peptidase [Yersinia pestis D182038]
gi|294353469|gb|ADE63810.1| prepilin peptidase [Yersinia pestis Z176003]
Length = 279
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L A D + ++P+ ++I +L LL L + G + +
Sbjct: 128 LVLIWSLTALAFIDFDTYLLPDCMTIPLLWLGLLINIDTVFAPLTSAVLGAVSGYLFLWL 187
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG + LF ++F +
Sbjct: 188 SYWLFKIVRGVDGMGYGDFKLMAALGAWFGVSAVPFLILFSSFFGLVAYAIFYFFDKKDN 247
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
N I +G IS+ G++
Sbjct: 248 GKEI-------------NYIAFGPYISLAGVLYLFLG 271
>gi|56459561|ref|YP_154842.1| Type II pili prepilin peptidase PilD/XcpA [Idiomarina loihiensis
L2TR]
gi|56178571|gb|AAV81293.1| Type II pili prepilin peptidase PilD/XcpA [Idiomarina loihiensis
L2TR]
Length = 286
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 24/162 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
+ V+ L+ + D ++P++++ +L LL + M + G
Sbjct: 129 ALVYATVFSLLICLFVIDWRHQLLPDQLTYPLLWVALLWSISDLSDMTPTSAIIGAAAGY 188
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F + MG GD KLL + + G + ++ G ++ + +L
Sbjct: 189 LSLWSVFWAYKLITGKEGMGYGDFKLLAAITAFTG-ATLLPVTILASSVCGAVIGLIML- 246
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ IP+G + GGL+SY
Sbjct: 247 ----------------RRQSRSQPIPFGPFLIGGGLLSYFYG 272
>gi|241763809|ref|ZP_04761855.1| Prepilin peptidase [Acidovorax delafieldii 2AN]
gi|241366941|gb|EER61346.1| Prepilin peptidase [Acidovorax delafieldii 2AN]
Length = 289
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 22/157 (14%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVGLIVFIIC 72
+V A D + ++P+ +++ +L + LL + + G + +
Sbjct: 136 FSAAMVALAFIDWDTTLLPDDITLPLLWAGLLASAARWIEVPLFDSVTGAAGGYLSLWLV 195
Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ F MG GD KL + WFGW + + + +++G ++ + +
Sbjct: 196 YWGFKLATGKEGMGYGDFKLFAALGAWFGWQ-ALVPIILMSSVIGALVGIGLKVFNN--- 251
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+P+G + GL +
Sbjct: 252 ------------LREGGYVPFGPFLVGAGLTAMVFGP 276
>gi|148258233|ref|YP_001242818.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
BTAi1]
gi|146410406|gb|ABQ38912.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
BTAi1]
Length = 174
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 87/162 (53%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ A L+ P + FAA SDLF+ I NRVS +L FL+ A L GM + + H+ G
Sbjct: 3 LDLARLLLFPALMAFAAASDLFTMTISNRVSFALLAGFLVLAPLSGMGMQDMLSHVGAGA 62
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ ++ F FAF +GGGD K+ ++ A+WFG+ L+ G + + + +
Sbjct: 63 LLLVVAFACFAFGWIGGGDAKVASAAALWFGFAHLMNYLLYASIFGGVLTLLLMQFRQWP 122
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
++ ++ + ++ +PYGIA+++G L+ YPD+ K
Sbjct: 123 LPYMLAGQPWLARLHARESGVPYGIALALGALMVYPDTDWVK 164
>gi|51246869|ref|YP_066753.1| type IV prepilin leader peptidase [Desulfotalea psychrophila LSv54]
gi|50877906|emb|CAG37746.1| related to type IV prepilin leader peptidase [Desulfotalea
psychrophila LSv54]
Length = 263
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 21/170 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-----DYELIALH 61
+ + L+ + D + +IP+ +S+ + L +F+ + +
Sbjct: 101 LTFLAYFCFSAALLVIIVIDFYHQIIPDLISLPGIALGFLFSFINPEISWLSSLIGLLVG 160
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F MGGGD+KLL W GW S + +F ++ G I+ + L
Sbjct: 161 GGALYAIAWGYFTLRKQEGMGGGDIKLLAMLGAWLGWQ-SLVFIVFTSSLFGAIIGLIAL 219
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
++ N + KIP+G + + L+ S +
Sbjct: 220 RIQNKGN---------------QTKIPFGPFLCLAALVYLFYSVEIQYFF 254
>gi|170023263|ref|YP_001719768.1| prepilin peptidase [Yersinia pseudotuberculosis YPIII]
gi|169749797|gb|ACA67315.1| Prepilin peptidase [Yersinia pseudotuberculosis YPIII]
Length = 280
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L A D + ++P+ ++I +L LL L + G + +
Sbjct: 129 LVLIWSLTALAFIDFDTYLLPDCMTIPLLWLGLLINIDTVFAPLTSAVLGAVSGYLFLWL 188
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG + LF ++F +
Sbjct: 189 SYWLFKIVRGVDGMGYGDFKLMAALGAWFGVSAVPFLILFSSFFGLVAYAIFYFFDKKDN 248
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
N I +G IS+ G++
Sbjct: 249 GKEI-------------NYIAFGPYISLAGVLYLFLG 272
>gi|94501409|ref|ZP_01307929.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Oceanobacter sp. RED65]
gi|94426522|gb|EAT11510.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Oceanobacter sp. RED65]
Length = 286
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 21/151 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + ++ + + + DL ++P+++++ ++ LL + E L + G
Sbjct: 127 LEAYALILMSYFFIALTMIDLDEFLLPDQLTLPLIWIGLLFNLHGAIVPLEDAVLGAVFG 186
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F F MG GD KLL + + GW + L + + ++
Sbjct: 187 YMSLWSIFWLFKLATGKEGMGYGDFKLLAAIGAFIGWQLLPVVVLLSSFVGAIVGISMMI 246
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
+ N IP+G
Sbjct: 247 VLGRDKNI----------------PIPFGPY 261
>gi|261856175|ref|YP_003263458.1| prepilin peptidase [Halothiobacillus neapolitanus c2]
gi|261836644|gb|ACX96411.1| Prepilin peptidase [Halothiobacillus neapolitanus c2]
Length = 294
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 23/164 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT---AFLLGMDYELIALHLLV 64
+ + + L+ AA+ DL + ++P+ +++ ++ LL F + E + +
Sbjct: 133 TAIAVWVFSWILLAAAIIDLKTTLLPDNLTLPLMWLGLLLALTGFGTTVTLENAVIGAMA 192
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + W GW L A +G ++ + +
Sbjct: 193 GYLSLWSIYWLFKLLTGREGMGYGDFKLLAALGAWLGWQQ-LPMVLLLSAGVGAVVGIGM 251
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + IP+G ++ GL+SY
Sbjct: 252 ILFLK---------------HDKRIPIPFGPYLASAGLLSYYFG 280
>gi|108806460|ref|YP_650376.1| prepilin peptidase [Yersinia pestis Antiqua]
gi|108813170|ref|YP_648937.1| prepilin peptidase [Yersinia pestis Nepal516]
gi|145598006|ref|YP_001162082.1| prepilin peptidase [Yersinia pestis Pestoides F]
gi|150260176|ref|ZP_01916904.1| prepilin peptidase [Yersinia pestis CA88-4125]
gi|167466643|ref|ZP_02331347.1| type IV prepilin peptidase [Yersinia pestis FV-1]
gi|218927986|ref|YP_002345861.1| prepilin peptidase [Yersinia pestis CO92]
gi|229837698|ref|ZP_04457858.1| prepilin peptidase [Yersinia pestis Pestoides A]
gi|229840708|ref|ZP_04460867.1| prepilin peptidase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842736|ref|ZP_04462890.1| prepilin peptidase [Yersinia pestis biovar Orientalis str. India
195]
gi|229903616|ref|ZP_04518729.1| prepilin peptidase [Yersinia pestis Nepal516]
gi|108776818|gb|ABG19337.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Yersinia pestis Nepal516]
gi|108778373|gb|ABG12431.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Yersinia pestis Antiqua]
gi|115346597|emb|CAL19478.1| prepilin peptidase [Yersinia pestis CO92]
gi|145209702|gb|ABP39109.1| prepilin peptidase [Yersinia pestis Pestoides F]
gi|149289584|gb|EDM39661.1| prepilin peptidase [Yersinia pestis CA88-4125]
gi|229679386|gb|EEO75489.1| prepilin peptidase [Yersinia pestis Nepal516]
gi|229690216|gb|EEO82271.1| prepilin peptidase [Yersinia pestis biovar Orientalis str. India
195]
gi|229697074|gb|EEO87121.1| prepilin peptidase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229704075|gb|EEO91087.1| prepilin peptidase [Yersinia pestis Pestoides A]
gi|320014122|gb|ADV97693.1| prepilin peptidase [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 280
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L A D + ++P+ ++I +L LL L + G + +
Sbjct: 129 LVLIWSLTALAFIDFDTYLLPDCMTIPLLWLGLLINIDTVFAPLTSAVLGAVSGYLFLWL 188
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG + LF ++F +
Sbjct: 189 SYWLFKIVRGVDGMGYGDFKLMAALGAWFGVSAVPFLILFSSFFGLVAYAIFYFFDKKDN 248
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
N I +G IS+ G++
Sbjct: 249 GKEI-------------NYIAFGPYISLAGVLYLFLG 272
>gi|307610223|emb|CBW99782.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Legionella pneumophila 130b]
Length = 275
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ L+ + L+ DL ++P+ +++ +L L+ + ++ L
Sbjct: 117 IQLLFALLAIWILISLVFIDLDHQLLPDSLTLGLLWIGLIANTQNVFVSLDVAVLSCAGA 176
Query: 66 LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL + W GW L +I G I+ + L
Sbjct: 177 YLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMY-LPLILLISSITGAIIGLIYL 235
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ IP+G + + GLI+
Sbjct: 236 KINGK---------------SRDTAIPFGPFLCISGLIAMFWGD 264
>gi|194290796|ref|YP_002006703.1| type IV prepilin peptidase [Cupriavidus taiwanensis LMG 19424]
gi|193224631|emb|CAQ70642.1| TYPE 4 PREPILIN PEPTIDASE BIFUNCTIONNAL: LEADER PEPTIDASE AND
N-METHYLTRANSFERASE TRANSMEMBRANE PROTEIN [Cupriavidus
taiwanensis LMG 19424]
Length = 307
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 21/163 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
+ L+ + L+ + D + ++P+++++ +L LL + + G
Sbjct: 153 QALAALVLVWGLLALTMIDADTQLLPDQITLPLLWIGLLLNVAGLFVALPDAVIGAAAGY 212
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+V I + F MG GD KL+ + WFGW + + + ++ G + + +
Sbjct: 213 LVLWIAYWLFRLLRGKEGMGFGDFKLMAALGAWFGWQ-ALPALVLLSSVAGVLFGLANIA 271
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+R P+G I++ G++
Sbjct: 272 LRRQ---------------DRDTPFPFGPFIALAGVVVLLFGP 299
>gi|298370053|ref|ZP_06981369.1| leader peptidase PilD [Neisseria sp. oral taxon 014 str. F0314]
gi|298281513|gb|EFI23002.1| leader peptidase PilD [Neisseria sp. oral taxon 014 str. F0314]
Length = 286
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 58/154 (37%), Gaps = 25/154 (16%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
LI L+ D+ + +P+++++ ++ LL F + + L + G + +
Sbjct: 134 LILTAVLIALTFIDIDTQYLPDQLTLPLIWLGLLFNFDGAFVSLQSAVLGAVCGYMSLWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F+ MG GD KLL + W G + +F A++G ++ + R
Sbjct: 194 LNSFYRLVRGVQGMGAGDFKLLAALGAWLGV-GTLPVLVFMSALVGLAGALIMRVARN-- 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+G ++++ G + +
Sbjct: 251 -----------------QPFAFGPSLAIAGWVVF 267
>gi|325518037|gb|EGC97842.1| prepilin peptidase [Burkholderia sp. TJI49]
Length = 300
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + + G
Sbjct: 146 TALAVFGLCAALLAMSAIDIRTGYLPDSMTLPLLWAGLALNLADTLTSLRSAVIGAMAGY 205
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD+KLL + W GW + + F A+ G I+ +
Sbjct: 206 LFLWSIYWLFKWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAIVGLLATW 264
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F AL G
Sbjct: 265 RGR---------------MRFEEPIPFGPFLAAGGVATLFFGTPFYSALGG 300
>gi|239994224|ref|ZP_04714748.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Alteromonas macleodii ATCC 27126]
Length = 297
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 21/160 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
+ ++ + LV DL ++P+++++ +L LL + + + + G
Sbjct: 140 QALWAVLFTYILVALLFIDLDKMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIVGAAAGY 199
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL + + GW + L + + ++
Sbjct: 200 LSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPIIILLSSFVGAIAGILIMVI 259
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ IP+G +++ G ++
Sbjct: 260 QNKGKSL----------------AIPFGPYLAVAGWLTLL 283
>gi|148263857|ref|YP_001230563.1| peptidase A24A domain-containing protein [Geobacter uraniireducens
Rf4]
gi|146397357|gb|ABQ25990.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Geobacter uraniireducens Rf4]
Length = 263
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 21/171 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-----DYELIALHLLV 64
+ LV DL +IP+ +S+ + +FLL I +
Sbjct: 103 LFLFLFCSALVVITFIDLEHQIIPDVISLPGIVIGFAASFLLPWLGWKNSLIGILIGGGS 162
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LIV MGGGD+KLL + GW S +F +++G I+ + ++ V+
Sbjct: 163 LLIVAYGYQFLTKKEGMGGGDIKLLAMMGAFLGWR-SVPFIIFVASLVGSIIGITLMVVQ 221
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
K IP+G +++ ++ + L+
Sbjct: 222 KK---------------DSKLAIPFGPFLAISAILYIFFGKEIIWWYLSLA 257
>gi|226943334|ref|YP_002798407.1| type IV Pilus Prepilin peptidase, PilD [Azotobacter vinelandii DJ]
gi|226718261|gb|ACO77432.1| type IV Pilus Prepilin peptidase, PilD [Azotobacter vinelandii DJ]
Length = 289
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + E + G
Sbjct: 131 QAGAMLLLGWALLAMSLIDYDHQLLPDSLVLPLLWLGLILNSFSLFVSLEDALWGAVTGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL W GW L+ L +++G +L + IL
Sbjct: 191 LSLWSVYWLFKLFTGKEGMGYGDFKLLAMLGAWGGWQILPLTVLL-SSLVGAMLGIVILR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G ++ G I+ + +
Sbjct: 250 LRKA---------------ESGTPIPFGPFLAFAGWIALLWGEQITAGYLRFA 287
>gi|260900212|ref|ZP_05908607.1| type IV prepilin leader peptidase [Vibrio parahaemolyticus AQ4037]
gi|308110274|gb|EFO47814.1| type IV prepilin leader peptidase [Vibrio parahaemolyticus AQ4037]
Length = 216
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ + F L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 56 FTVALIFFTFFLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 115
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G I + L
Sbjct: 116 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGVIFGLVQL 174
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G +S
Sbjct: 175 RLQKQG---------------IERAFPFGPYLAIAGWVSLIWGDQI 205
>gi|146329054|ref|YP_001210008.1| type IV prepilin peptidase [Dichelobacter nodosus VCS1703A]
gi|7674101|sp|Q46525|LEP4_DICNO RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|790211|gb|AAB65807.1| FimP [Dichelobacter nodosus]
gi|146232524|gb|ABQ13502.1| type IV prepilin peptidase [Dichelobacter nodosus VCS1703A]
Length = 286
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 25/166 (15%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ L+ + L+ D ++P+R+++ +L +L A ++ E + ++G
Sbjct: 132 LSLGFALVFTWTLIALCFIDAEHQLLPDRLTLPLLWLGILAALFNVFINLESSVIGAMIG 191
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL W G LF AILG I ++ I
Sbjct: 192 YLSLWSVYWLFKLITGREGMGYGDFKLLACLCAWQGAW-MLPIILFSAAILGMIYALGI- 249
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
M +P+G +++ G +++
Sbjct: 250 ------------------GLRMGKPMPFGPFLAIAGWLTFLYGAQI 277
>gi|91785277|ref|YP_560483.1| Type 4 prepilin-like peptidase, leader peptide processing enzyme
[Burkholderia xenovorans LB400]
gi|91689231|gb|ABE32431.1| Type 4 prepilin-like peptidase, leader peptide processing enzyme
[Burkholderia xenovorans LB400]
Length = 318
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + L+ + D+ + ++P+ +++ +L + ++ F + L + G
Sbjct: 163 LTALAAFGLCAALLAMSAIDIDTHLLPDSLTLPLLWAGIIVNFNGMFANLHDAVLGAIFG 222
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + F MG GD KLL + W GW + + A+ G ++ +
Sbjct: 223 YLVLWVVHWLFRLVRGVEGMGYGDFKLLAALGAWLGWA-ALPQIVLIAAVAGAVIGLLAT 281
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +P+G ++ GG ++ +AL G
Sbjct: 282 WRGR---------------MRFEEPLPFGPFLAAGGALTLFLGTPLYLALGG 318
>gi|134294663|ref|YP_001118398.1| type 4 prepilin peptidase 1 [Burkholderia vietnamiensis G4]
gi|134137820|gb|ABO53563.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Burkholderia vietnamiensis G4]
Length = 303
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + + G
Sbjct: 149 AAIAAFGLCAALLAMSAIDIRTGYLPDSMTLPLLWAGLALNLAGMFTSLQSAVIGAMSGY 208
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD+KLL + W GW + + F A+ G I+ +
Sbjct: 209 LFLWSIYWLFRWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAIVGLVATW 267
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F AL G
Sbjct: 268 RGR---------------MRFEEPIPFGPFLAAGGVATLFFGTPFYSALGG 303
>gi|331654574|ref|ZP_08355574.1| leader peptidase PppA [Escherichia coli M718]
gi|331047956|gb|EGI20033.1| leader peptidase PppA [Escherichia coli M718]
Length = 353
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 210 ALAVMILSAWLIAASIIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 269
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 270 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 325
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 326 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 353
>gi|148359057|ref|YP_001250264.1| type 4 (IV) prepilin-like protein leader peptide processing enzyme
PilD [Legionella pneumophila str. Corby]
gi|296107106|ref|YP_003618806.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Legionella pneumophila 2300/99 Alcoy]
gi|148280830|gb|ABQ54918.1| type 4 (IV) prepilin-like protein leader peptide processing enzyme
PilD [Legionella pneumophila str. Corby]
gi|295649007|gb|ADG24854.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Legionella pneumophila 2300/99 Alcoy]
Length = 287
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 21/167 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ L+ + L+ DL ++P+ +++ +L L+ + ++ L
Sbjct: 129 IQLLFALLAIWILISLVFIDLDHQLLPDSLTLGLLWIGLIANTQNIFVSLDVAVLSCAGA 188
Query: 66 LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL + W GW L +I G I+ + L
Sbjct: 189 YLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMY-LPLILLISSITGAIIGLIYL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ IP+G + + GLI+ L
Sbjct: 248 KINGK---------------SRDTAIPFGPFLCISGLIAMFWGDLII 279
>gi|152980010|ref|YP_001354688.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Janthinobacterium sp. Marseille]
gi|151280087|gb|ABR88497.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Janthinobacterium sp. Marseille]
Length = 286
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 21/166 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L+ D + ++P+ +++ +L LL + + G +
Sbjct: 135 LLFTYLLIALTFIDADTQLLPDDLTLSLLWLGLLINLNATFVPLHEAVIGAAAGYLSLWS 194
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W GW + +++G ++ + ++ +
Sbjct: 195 IYWLFKLLTGKEGMGYGDFKLLAALGAWLGWK-MLPVIILLSSLVGAVVGIALIVLAKRG 253
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
IP IP+G ++ GLI+ +G
Sbjct: 254 RDIP---------------IPFGPYLAAAGLIALVYGKSLAETYLG 284
>gi|330501799|ref|YP_004378668.1| prepilin peptidase [Pseudomonas mendocina NK-01]
gi|328916085|gb|AEB56916.1| prepilin peptidase [Pseudomonas mendocina NK-01]
Length = 283
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ + E + G
Sbjct: 125 QAGAMLVLAWGLLAMSLIDADHQILPDVLVLPLLWLGLIVNYFGLFTSLEDALWGAIAGY 184
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL W GW L+ L +++G +L V +L
Sbjct: 185 LSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMLR 243
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + + + +
Sbjct: 244 MRGS---------------DSGTPIPFGPYLAIAGWIALLWGDVITGSYLKFA 281
>gi|118579238|ref|YP_900488.1| prepilin peptidase [Pelobacter propionicus DSM 2379]
gi|118501948|gb|ABK98430.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Pelobacter propionicus DSM 2379]
Length = 255
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 21/155 (13%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIV 68
A + L+ DL +IPN++S+ + + +F L + L +L G
Sbjct: 103 AALFLFCSALLVITCIDLEYRVIPNKISLPGIVIGFVLSFFLPWPGWLNSLLGILAGGGS 162
Query: 69 FIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
++ MGGGD+KL+ + GW L + +L R
Sbjct: 163 LLLVACAYEWLTGREGMGGGDIKLVAMMGAFLGWEAVPFIILAGSLAGLLAGGLPMLIRR 222
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
IP+G ++ G L
Sbjct: 223 R----------------DSGQAIPFGPYLAFGALF 241
>gi|153947137|ref|YP_001399946.1| type IV prepilin peptidase [Yersinia pseudotuberculosis IP 31758]
gi|152958632|gb|ABS46093.1| type IV prepilin peptidase [Yersinia pseudotuberculosis IP 31758]
Length = 277
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L A D + ++P+ ++I +L LL L + G + +
Sbjct: 126 LVLIWSLTALAFIDFDTYLLPDCMTIPLLWLGLLINIDTVFAPLTSAVLGAVSGYLFLWL 185
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG + LF ++F +
Sbjct: 186 SYWLFKIVRGVDGMGYGDFKLMAALGAWFGVSAVPFLILFSSFFGLVAYAIFYFFDKKDN 245
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
N I +G IS+ G++
Sbjct: 246 GKEI-------------NYIAFGPYISLAGVLYLFLG 269
>gi|119773508|ref|YP_926248.1| prepilin peptidase [Shewanella amazonensis SB2B]
gi|119766008|gb|ABL98578.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Shewanella amazonensis SB2B]
Length = 304
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
+ F L+ + DL ++P+ +++ +L LL + E + G
Sbjct: 148 QFVTAALLTFGLIAMSGIDLDEMLLPDSLTLPLLWLGLLLNYHGLFTTLEDALIGAAAGY 207
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KL+ W GW L L + + + ++
Sbjct: 208 LSLWSVYWLFKLTTGKEGMGYGDFKLMGLFGAWLGWQMLPLIILLSSLVGAVVGILMMV- 266
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
KS +N IP+G I+ G I+ +G
Sbjct: 267 ---------------WKSHKRENPIPFGPYIAAAGWIALIWGQDIVSWYLG 302
>gi|161830282|ref|YP_001596122.1| type 4 prepilin peptidase PilD [Coxiella burnetii RSA 331]
gi|161762149|gb|ABX77791.1| type 4 prepilin peptidase PilD [Coxiella burnetii RSA 331]
Length = 286
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ DL + ++P+ +++ L L + F + + ++G
Sbjct: 130 QALAGLLLTWVLIVLFFIDLKTQLLPDAITLPTLWFGLSLSLFYMFVSPYQAIFGAILGY 189
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ I F+ MG GD K+++ WFG L V + G I S +L
Sbjct: 190 GLLWITAAFYQLIRKKGGMGRGDFKMVSMLGAWFGPVIVLNVLLLAVFL-GLITSFMLLA 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ I +K IP+ I++ G IS + L+
Sbjct: 249 LKKI---------------SVKQPIPFAPFIAVAGWISLLSGPVLIHKLIS 284
>gi|91977983|ref|YP_570642.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5]
gi|91684439|gb|ABE40741.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5]
Length = 174
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 78/159 (49%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ P + FAA SDLF+ I NRVS++++ F++ A L GM IA H GL V +
Sbjct: 8 LSLFPALMAFAAASDLFTMTISNRVSLLLVAGFIVLAPLTGMGLYEIASHFGAGLAVLAV 67
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F FA +GGGD K+ + A+WFG+ ++ G + + + + +
Sbjct: 68 AFGCFAMGWVGGGDAKVAAAAALWFGFGHLLDYLVYASLFGGALTLLLLSFRQWPLPYQL 127
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
++ + + IPYGIA++MG L YP + +
Sbjct: 128 AGQGWLMRLHAKETGIPYGIALAMGALAVYPQTEWIQAV 166
>gi|296133253|ref|YP_003640500.1| peptidase A24A domain protein [Thermincola sp. JR]
gi|296031831|gb|ADG82599.1| peptidase A24A domain protein [Thermincola potens JR]
Length = 250
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 16/157 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ V+L+ L+ + DL +IPN + I+ L L + + L
Sbjct: 98 EAVVYLVLISLLIVISFIDLRLKIIPNGLIIIGLVVGLAINIIRPLTTFSGGLVGFFSAG 157
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + MGGGD+KL +W GW +FL F + G + + ++
Sbjct: 158 CLFLAIAVLSKGGMGGGDIKLAAMLGLWLGWQQAFLGFFL-AFLSGTAVGIGLMATGQK- 215
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
K+ IP+G IS+G L+S S
Sbjct: 216 --------------SRKDAIPFGPFISLGALLSIFWS 238
>gi|52841754|ref|YP_095553.1| type 4 (IV) prepilin-like protein leader peptide processing enzyme
PilD [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52628865|gb|AAU27606.1| type 4 (IV) prepilin-like protein leader peptide processing enzyme
PilD [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 289
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ L+ + L+ DL ++P+ +++ +L L+ + ++ L
Sbjct: 131 IQLLFALLAIWILISLVFIDLDHQLLPDSLTLGLLWIGLIANTQNVFVSLDVAVLSCAGA 190
Query: 66 LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL + W GW L +I G I+ + L
Sbjct: 191 YLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMY-LPLILLISSITGAIIGLIYL 249
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ IP+G + + GLI+
Sbjct: 250 KINGK---------------SRDTAIPFGPFLCISGLIAMFWGD 278
>gi|127514368|ref|YP_001095565.1| prepilin peptidase [Shewanella loihica PV-4]
gi|126639663|gb|ABO25306.1| Prepilin peptidase [Shewanella loihica PV-4]
Length = 303
Score = 78.4 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 21/163 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
+ F L+ DL ++P+++++ +L LL + + G
Sbjct: 147 QFVFATLLTFGLIALTGIDLDEMLLPDQITLPLLWLGLLINLNGTYVSITDAVIGASAGY 206
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL WFGW L L + G ++ + ++
Sbjct: 207 MSLWSVFWGFKILTGKEGMGYGDFKLLAVFGAWFGWQLLPLIILLSSIV-GALVGLLLIV 265
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ I N IP+G I++ G I+
Sbjct: 266 NKKI---------------NSGNPIPFGPYIALAGWIAMIWGE 293
>gi|254499403|ref|ZP_05112069.1| type IV prepilin peptidase PilD [Legionella drancourtii LLAP12]
gi|254351382|gb|EET10251.1| type IV prepilin peptidase PilD [Legionella drancourtii LLAP12]
Length = 286
Score = 78.4 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 21/162 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
L+ + L+ D+ ++P+ +++ +L L+ L
Sbjct: 129 QLPFALMALWLLICLFFIDVDHQLLPDSITLSLLWLGLIANTENLFAPLPEAVLSAAGAY 188
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I + F MG GD KL + WFGW L F +I G I+ + L
Sbjct: 189 IGLWLFIKLFYLVTGKIGMGNGDFKLFAAFGAWFGWKF-LPLILLFSSIAGTIIGLLYL- 246
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ IP+G + G+ +
Sbjct: 247 --------------YLQDKSKDTTIPFGPFLCASGIAALFWG 274
>gi|54297436|ref|YP_123805.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Legionella pneumophila str. Paris]
gi|53751221|emb|CAH12632.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Legionella pneumophila str. Paris]
Length = 287
Score = 78.4 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ L+ + L+ DL ++P+ +++ +L L+ + ++ L
Sbjct: 129 IQLLFALLAIWILISLVFIDLDHQLLPDSLTLGLLWIGLIANTQNIFVSLDVAVLSCAGA 188
Query: 66 LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL + W GW L +I G I+ + L
Sbjct: 189 YLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMY-LPLILLISSITGAIIGLIYL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ IP+G + + GLI+
Sbjct: 248 KINGK---------------SRDTAIPFGPFLCISGLIAMFWGD 276
>gi|329895292|ref|ZP_08270934.1| Leader peptidase / N-methyltransferase [gamma proteobacterium
IMCC3088]
gi|328922414|gb|EGG29757.1| Leader peptidase / N-methyltransferase [gamma proteobacterium
IMCC3088]
Length = 285
Score = 78.4 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLI 67
+ L+ +CLV + D + ++P+ +++ +L L+ D + G
Sbjct: 131 LLLALVTTWCLVALTVIDAETQLLPDDITLPLLWLGLVANAFGVFTDLPSALWGAVFGYG 190
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F MG GD KLL + GW + L A+ I + + T
Sbjct: 191 ILWSIYWIFKLTTGKEGMGYGDFKLLGALGALLGWQALPMIILMSSAVGAIIGTALMATK 250
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
R + +P+G +++ G +S
Sbjct: 251 R----------------LDREQPMPFGPYLAIAGWLS 271
>gi|328952533|ref|YP_004369867.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109]
gi|328452857|gb|AEB08686.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109]
Length = 260
Score = 78.4 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 16/171 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
+ ++ L+ ++ DL ++P+ +++ +G LL++ + + + + L G
Sbjct: 96 ILLLAYVPFALALLTLSVIDLEQGLLPDVITLPGIGFGLLSSLVFQELSFFSALVGALTG 155
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
VF +A MGGGDVKLL + G ++ + +L
Sbjct: 156 AAVFQGIAWIYAKWAGKQGMGGGDVKLLAMIGAFLGIQSLPWVIFLSASLGTLTGIILVL 215
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
IP+G +++GGL L
Sbjct: 216 RKGRHPKETLRSL-----------PIPFGPFLAIGGLFYLFGKEYLLRFLE 255
>gi|296160525|ref|ZP_06843341.1| Prepilin peptidase [Burkholderia sp. Ch1-1]
gi|295889274|gb|EFG69076.1| Prepilin peptidase [Burkholderia sp. Ch1-1]
Length = 318
Score = 78.4 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + L+ + D+ + ++P+ +++ +L + ++ F + L + G
Sbjct: 163 LTALAAFGLCAALLAMSAIDIDTHLLPDSLTLPLLWAGIIVNFNGMFANLHDAVLGAIFG 222
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + F MG GD KLL + W GW + + A+ G ++ +
Sbjct: 223 YLVLWVVHWVFRLVRGVEGMGYGDFKLLAALGAWLGWA-ALPQIVLIAAVAGAVIGLLAT 281
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +P+G ++ GG ++ +AL G
Sbjct: 282 WRGR---------------MRFEEPLPFGPFLAAGGALTLFLGTPLYLALGG 318
>gi|254253321|ref|ZP_04946639.1| Type II secretory pathway prepilin signal peptidase PulO
[Burkholderia dolosa AUO158]
gi|124895930|gb|EAY69810.1| Type II secretory pathway prepilin signal peptidase PulO
[Burkholderia dolosa AUO158]
Length = 303
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 21/170 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
V + L+ + D+ ++ +P+ +++ +L + L + + G
Sbjct: 148 VAALAAFGLCAALLAMSAIDIRTSYLPDSMTLPLLWAGLAANLGGTFTSLRSAVIGAMAG 207
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F +G GD+KLL + W GW + + F A+ G I+ + +
Sbjct: 208 YLFLWAIYWLFKWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAIVGLVAM 266
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ IP+G ++ GG+ + F +AL
Sbjct: 267 WRGR---------------MRFEEPIPFGPFLAAGGVATLFFGTPFYLAL 301
>gi|304392386|ref|ZP_07374327.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130]
gi|303295490|gb|EFL89849.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130]
Length = 181
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 2/175 (1%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ +V AV + P C+++A SDL S I N V++ F + A L GM ++ IA+
Sbjct: 5 LTFDHIVAFAVLTVFPLCVIYATFSDLLSMKISNLTCGVLVLGFFILAPLSGMGWQAIAI 64
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
H V + ++ FF+ +MGGGD KL+ + ++W G + L + + V +
Sbjct: 65 HSSVAVAALVMGMSFFSMGVMGGGDAKLIAAVSLWLGLGLTLPYILAASLLGAVVTLVIV 124
Query: 121 LTVRMITNHIPIFGMF--VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ F + + K K IPYG+A+ L+ + S A
Sbjct: 125 GLRKAKPRLPQAFRDWRVMAKVLDRKEGIPYGLALGPAALVVFTISPWVTSAARA 179
>gi|146338125|ref|YP_001203173.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
ORS278]
gi|146190931|emb|CAL74936.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
ORS278]
Length = 174
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 82/163 (50%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ A LI P + FAA SDL + I NRVS+ ++ FL+ A L GM + +H G
Sbjct: 3 LDLARLLIFPALMAFAAASDLLTMTISNRVSLALVAGFLVMAPLSGMSMADMLMHCGAGA 62
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ +I F FAF +GGGD K+ ++ A+WFG+ L+ G + + +
Sbjct: 63 SLLVIAFTCFAFGWIGGGDAKVASAAALWFGFAHLMNYLLYASIFGGVLTLALMQFRQWP 122
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ ++ + + +PYGIA+++G L+ YP++ K
Sbjct: 123 LPYGLAGQPWLARLHAKDSGVPYGIALALGALMVYPETEWVKA 165
>gi|62261834|gb|AAX78020.1| unknown protein [synthetic construct]
Length = 307
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 23/160 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
S + + D ++P+ +++ +L ++ + E ++G
Sbjct: 150 QSLALVTLASFFIPLFFIDAKHQILPDSLTLPLLWLGIILNYYHTFTTLEQSVWGAIIGY 209
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F + G GD KLL + WFG+ + I L
Sbjct: 210 LSLWLVFWIYKILTGKEGFGYGDFKLLAAVGAWFGYPMLLYTIFASCIFGIIIAIAINLV 269
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I +G AI +
Sbjct: 270 AKRTNV------------------IAFGPAIILATFFYLL 291
>gi|78222179|ref|YP_383926.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Geobacter metallireducens GS-15]
gi|78193434|gb|ABB31201.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Geobacter metallireducens GS-15]
Length = 259
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 21/172 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIV 68
V + LV DL +IP+ +S+ + +F L ++ + ++ G
Sbjct: 103 LVLFVFCSALVAVTFIDLDHQLIPDVISLPGIVVGFACSFALPWLGWKSSLIGIVAGGGS 162
Query: 69 FIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + MGGGD+KLL + GW S +F +++G ++ V ++ V+
Sbjct: 163 LLSVARLYELLTKKEGMGGGDIKLLAMMGAFLGWR-SVPFIIFASSLIGSVIGVTLMLVQ 221
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
K IP+G ++ G ++ + L A
Sbjct: 222 KK---------------DSKLAIPFGPFLATGAVLYIFFGKTIITWYLTLGA 258
>gi|27376552|ref|NP_768081.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium
japonicum USDA 110]
gi|27349693|dbj|BAC46706.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium
japonicum USDA 110]
Length = 174
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 81/164 (49%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ A L+ P + FAA SDLF+ I NRVS+ ++ F A GM + H+ G
Sbjct: 2 ILDLARLLLFPALMAFAAASDLFTMTISNRVSLALVAGFFALALSGGMAPYEMLGHVGAG 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+V ++ F FA +GGGD K+ S A+WFG+ L+ G + + + +
Sbjct: 62 ALVLVVAFTCFAMGWVGGGDAKVAASVALWFGFAQLMNFLLYASLFGGALTLLLLQFRQW 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ ++ + ++ IPYGIA+++ L+ YP++ K
Sbjct: 122 PLPYGLAGQAWLARLHAKESGIPYGIALALSALMVYPETEWVKA 165
>gi|257453561|ref|ZP_05618851.1| type IV pilus prepilin peptidase PilD [Enhydrobacter aerosaccus
SK60]
gi|257449019|gb|EEV23972.1| type IV pilus prepilin peptidase PilD [Enhydrobacter aerosaccus
SK60]
Length = 291
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 24/181 (13%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
MK + L+ + LV D + ++P+R+++ + G L F L +
Sbjct: 129 MKFGVTWQALAGLVLTWTLVALTGIDFDTQLLPDRLTLPLAGLGLFVNAFGLFVSPTAAI 188
Query: 60 LHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
+ G + I + F + MG GD KLL + W G L L + +
Sbjct: 189 FGYVFGFLCLWIVYQLFLLITGKHGMGHGDFKLLAALGAWLGPLMLPLIVLLSAFVGSVV 248
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMGL 174
+ + K +G I++ G+I+ + L +
Sbjct: 249 GVILM------------------KRSGESKPFAFGPYIAIAGMIALLYGQPIMSWYLGKM 290
Query: 175 S 175
S
Sbjct: 291 S 291
>gi|291615155|ref|YP_003525312.1| Prepilin peptidase [Sideroxydans lithotrophicus ES-1]
gi|291585267|gb|ADE12925.1| Prepilin peptidase [Sideroxydans lithotrophicus ES-1]
Length = 286
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 21/175 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ ++ + L+ D + ++P+ +++ +L LL + + +G
Sbjct: 127 MAGIAAIVFVWALIALTFIDFDTQLLPDDITLPLLWLGLLLNLNGAFTSLQNAVVGATLG 186
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GWT + +++G + + ++
Sbjct: 187 YLALWGVYWLFKLTTGKEGMGYGDFKLLATIGAWLGWT-MLPLVILLSSLVGAAVGISLI 245
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
IP+G ++ GGLI+ + + L A
Sbjct: 246 VFAK---------------HGRHIPIPFGPYLAGGGLIALFWGQALTQSYLQLLA 285
>gi|7674092|sp|O68433|LEP4_LEGPN RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|3025703|gb|AAC12718.1| type IV prepilin-like protein specific leader peptidase PilD
[Legionella pneumophila 130b]
Length = 287
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ L+ + L+ DL ++P+ +++ +L L+ + ++ L
Sbjct: 129 IQLLFALLAIWILISLVFIDLDHQLLPDSLTLGLLWIGLIANTQNVFVSLDVAVLSCAGA 188
Query: 66 LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL + W GW L +I G I+ + L
Sbjct: 189 YLALWLFINLFYLMTCKVCMGHGDFKLFAAFGAWLGWMY-LPIILLISSITGAIIGLIYL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ IP+G + + GLI+
Sbjct: 248 KINGK---------------SRDTAIPFGPFLCISGLIAMFWGD 276
>gi|224823846|ref|ZP_03696955.1| Prepilin peptidase [Lutiella nitroferrum 2002]
gi|224604301|gb|EEG10475.1| Prepilin peptidase [Lutiella nitroferrum 2002]
Length = 288
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
+ + L+ A D + ++P+ +++ +L LL + L G + + + ++G
Sbjct: 131 LDLLGYAALTATLIALAFIDADTQLLPDSLTLPLLWGGLLFSLLGGRVPLDEAVIGAMLG 190
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F F MG GD KLL + W GW + +++G + + ++
Sbjct: 191 YVSLWVIFWLFKLATGKEGMGYGDFKLLAALGAWLGWK-MLPLVILLSSLVGAVFGIAMI 249
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +P+G +++ G I+ +G
Sbjct: 250 LMAR---------------LGRGQHLPFGPYLALAGWIALLWGEQIVGWYLG 286
>gi|300021852|ref|YP_003754463.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC
51888]
gi|299523673|gb|ADJ22142.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC
51888]
Length = 169
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
++ + I P + FAA +DLF+ IPN +S+ ++G F+ A L M E +H++
Sbjct: 2 SVLTFLLVAIFPIAMAFAAANDLFTMRIPNVISLALIGGFVALAVLTRMPLETFGMHVVC 61
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
L V ++ F FAFN++GGGD KL+ + A+W G F G + + + R
Sbjct: 62 ALGVLLLTFALFAFNLLGGGDAKLMAAGALWMGSAQILPFIAFTTMFGGVLCLLILSYRR 121
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
M+ + + + +PYGIAI+ GL+ +P + LF++
Sbjct: 122 MVPADLLPLPGWAQRLHTAGGPVPYGIAIAASGLMVFPTTELFRMLQA 169
>gi|220922777|ref|YP_002498079.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
2060]
gi|219947384|gb|ACL57776.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
2060]
Length = 168
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 80/162 (49%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + ++ PF + +AA SDL + IPN +S+V++ F L A LG+ + + LHL G
Sbjct: 1 MASVILLVVFPFLMAYAAASDLLTMTIPNALSLVLVAVFPLAALALGLSWSEVGLHLGAG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + F F F ++GGGD KL +TA+W G+ P L G + + +
Sbjct: 61 GLTLALTFTLFCFGLIGGGDAKLAAATALWLGFEPLADYVLAASLAGGVLTLLILQVRIH 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
I + + + + +PYGIA++ L+ P + ++
Sbjct: 121 PLPRIAVSWPWALRLHDRRTGVPYGIALAFAALVVCPAAPMW 162
>gi|94312041|ref|YP_585251.1| type 4 prepilin peptidase 1 [Cupriavidus metallidurans CH34]
gi|93355893|gb|ABF09982.1| Type IV pilus prepilin leader peptidase 1 [Cupriavidus
metallidurans CH34]
gi|222832127|gb|EEE70604.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 21/163 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ ++ + LV + D + ++P+++++ +L LL + G
Sbjct: 132 QALAAIVMTWSLVALFMIDADTQLLPDQITLPLLWLGLLLNLQGLFAPLADAVIGAAAGY 191
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ + + MG GD KL+ + WFGW + + + +++G +L +L
Sbjct: 192 LLLWSVYWLYKLVRGREGMGHGDFKLMAALGAWFGWQ-ALPALILMSSVVGAVLGGAMLV 250
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
R P+G I GLI
Sbjct: 251 FRRK---------------SSDTTFPFGPYIVGAGLIVLFFGA 278
>gi|89901675|ref|YP_524146.1| prepilin peptidase [Rhodoferax ferrireducens T118]
gi|89346412|gb|ABD70615.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Rhodoferax ferrireducens T118]
Length = 280
Score = 77.6 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 22/164 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
+ V+ ++ D + ++P+ +++ +L + L+ A + + G
Sbjct: 124 TALVWCGFGATMLALGCIDWDTTLLPDDITLPLLWAGLIAAALQWTPVALPEALWGAVAG 183
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + F MG GD KL + WFGW + + + +++G ++ + +
Sbjct: 184 YVSLWLVYWAFKLVTGKEGMGFGDFKLFAALGAWFGWQ-ALVPIILMASVIGAVIGIAM- 241
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
IP+G + GL +
Sbjct: 242 --------------KFSSGLREGGYIPFGPFLVGAGLTAMIFGP 271
>gi|262193752|ref|YP_003264961.1| peptidase A24A domain protein [Haliangium ochraceum DSM 14365]
gi|262077099|gb|ACY13068.1| peptidase A24A domain protein [Haliangium ochraceum DSM 14365]
Length = 320
Score = 77.6 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 26/196 (13%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
+++ V F LV A DL +I ++++ + F LL + +
Sbjct: 123 PQQLLHFVVLAAFAFVLVVIAFIDLDHRLILDKITYPGIPIFYGLGLLLERPWLDGLIGA 182
Query: 63 LVGLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+G V + MG GD KLL FGW S I +
Sbjct: 183 ALGYGVVRLLADGYRLLTGREGMGYGDGKLLALIGALFGWQAVLASLFLGSIIGSVLGIT 242
Query: 119 FILTVRMITN----------------------HIPIFGMFVPKSFLMKNKIPYGIAISMG 156
I R + + L ++P+G + +G
Sbjct: 243 AIALARRAARGRDDTDAAPDAGEANTDAASADQVGGTRGEDDELPLRHVELPFGPFLVIG 302
Query: 157 GLISYPDSYLFKVALM 172
L+ +++ L
Sbjct: 303 ALVYVFVHPFYQLVLA 318
>gi|332976660|gb|EGK13500.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Psychrobacter sp. 1501(2011)]
Length = 301
Score = 77.6 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 24/173 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ + + LI + LV A D S +P++++ + L + LL+G
Sbjct: 146 LQAVIALIFVWTLVGLAGIDWISQYLPDKLTFPLAALGLAINSEAIFVTPTQSIWGLLLG 205
Query: 66 LIVFI----ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + F MG GD KLL W G + ++LG I+ + ++
Sbjct: 206 YLSLWTVVKVFYIFTKKQGMGQGDFKLLAVIGAWLGP-MMLPFVILLSSLLGSIIGIILM 264
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMG 173
R +G +++ +++ L + L
Sbjct: 265 HHR-----------------AESRPFAFGPYLAIAAIVALLYGESLIQWYLDW 300
>gi|186477405|ref|YP_001858875.1| prepilin peptidase [Burkholderia phymatum STM815]
gi|184193864|gb|ACC71829.1| Prepilin peptidase [Burkholderia phymatum STM815]
Length = 309
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 21/170 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLI 67
+ L+ + D+ + ++P+ +++ +L + L+ F + + G +
Sbjct: 156 ALAAFGLCATLLAMSAIDIDTHLLPDSMTLPLLWAGLIVNFNAVFATLHDAVVGAIAGYL 215
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F MG GD KLL++ W GWT + + A+ G ++ +F +
Sbjct: 216 ALWCVHWLFKIVRGVEGMGYGDFKLLSALGAWLGWT-ALPQIILIAAVTGAVVGLFATWI 274
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +P+G ++ GG ++ +AL G
Sbjct: 275 GR---------------MRFEEPLPFGPFLAAGGAVTLFVGTPLYMALGG 309
>gi|78065137|ref|YP_367906.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Burkholderia sp. 383]
gi|77965882|gb|ABB07262.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Burkholderia sp. 383]
Length = 303
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFA--- 77
+ D+ + +P+ +++ +L + L+ + + G + + F
Sbjct: 163 MSAIDIRTGYLPDSMTLPLLWAGLVLNLGGTFTSLRSAVIGAMAGYLFLWSIYWLFKWLR 222
Query: 78 -FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+G GD+KLL + W GW + + F A+ G I+ +
Sbjct: 223 GIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAIVGLIATWRGR----------- 270
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F AL G
Sbjct: 271 ----MRFEEPIPFGPFLAAGGVATLFFGTPFYSALGG 303
>gi|77163843|ref|YP_342368.1| prepilin peptidase [Nitrosococcus oceani ATCC 19707]
gi|254435131|ref|ZP_05048638.1| Bacterial Peptidase A24 N-terminal domain family [Nitrosococcus
oceani AFC27]
gi|76882157|gb|ABA56838.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Nitrosococcus oceani ATCC 19707]
gi|207088242|gb|EDZ65514.1| Bacterial Peptidase A24 N-terminal domain family [Nitrosococcus
oceani AFC27]
Length = 288
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ D ++P+ +++ L L F + D + + G
Sbjct: 130 ETMAALLLSYALITLTFIDFDHQLLPDNITLPFLWFGLGLGLFEVFTDARTSLIGAITGY 189
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + + F MG GD KLL W + + +I+G +L L
Sbjct: 190 LSLWLVYHLFRLLTKKEGMGYGDFKLLALLGAWL-GWTMLPAIILLSSIVGALLGTAWL- 247
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
S + IP+G ++ G ++ + L
Sbjct: 248 --------------YLSSQHRETPIPFGPYLAAAGWLALMWGQDINQFYLSL 285
>gi|54294433|ref|YP_126848.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Legionella pneumophila str. Lens]
gi|53754265|emb|CAH15742.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Legionella pneumophila str. Lens]
Length = 287
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ L+ + L+ DL ++P+ +++ +L L+ + ++ L
Sbjct: 129 IQLLFALLAIWILISLVFIDLDHQLLPDSLTLGLLWIGLIANTQNVFVSLDVAVLSCAGA 188
Query: 66 LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KL + W GW L +I G I+ + L
Sbjct: 189 YLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMY-LPLILLISSITGAIIGLIYL 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ IP+G + + GLI+
Sbjct: 248 KINGK---------------SRDTAIPFGPFLCISGLIAMFWGD 276
>gi|95928764|ref|ZP_01311510.1| Prepilin peptidase [Desulfuromonas acetoxidans DSM 684]
gi|95135109|gb|EAT16762.1| Prepilin peptidase [Desulfuromonas acetoxidans DSM 684]
Length = 264
Score = 77.2 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + V + LV D +IP+ +++ + + +F + ++ + +LVG
Sbjct: 105 MVTLVLFLFVSALVVVTFIDYDHQIIPDVITLPGIPIGFICSFAIPWVSWKDSLIGVLVG 164
Query: 66 LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ MGGGD+KLL + GW + + +L
Sbjct: 165 GGSLFAVAFLYEFFTKKEGMGGGDIKLLAMIGAFCGWRVILPVVFLSSLLGSLVGIPVML 224
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ K +P+G + G LI + L
Sbjct: 225 LQKG----------------DSKMALPFGPFLVAGTLIYLFWGEVLVRWYFNL 261
>gi|92116015|ref|YP_575744.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
gi|91798909|gb|ABE61284.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
Length = 174
Score = 77.2 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 82/164 (50%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ A L+ P + FAA SDL + I NRVS++++ FL+ A L GM + LH GL
Sbjct: 3 LDVARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVVAALSGMSLHDMLLHAGAGL 62
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
V ++ F FA +GGGD K+ + A+WFG+ ++ G + + + +
Sbjct: 63 AVLLVAFTCFAMGWVGGGDAKVAAAAALWFGFGHLLEYLVYASLFGGALTLLLLQFRQWP 122
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ ++ + IPYGIA+++G L+ YP++ K
Sbjct: 123 LPALFYSQDWLLRLHGKDTGIPYGIALALGALLIYPETGWIKAV 166
>gi|220923696|ref|YP_002498998.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
2060]
gi|219948303|gb|ACL58695.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
2060]
Length = 171
Score = 77.2 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 74/168 (44%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M S + ++ F +++A ++DL + I N + +V+L + + A L G I
Sbjct: 1 MTVSDLAAPCGMILFAFTVIYAGITDLTTMKIRNGLVLVLLLGYGILAPLAGFSLPQIGW 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ V + F FFAF +GGGD K +T +W G S + ++ + G + +
Sbjct: 61 SAALSFGVLLAAFIFFAFGWIGGGDAKFAAATVLWLGIDHSPVYLVYTALLGGLFTLLLL 120
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
++ + + +PYG+A+++ L+ +P ++
Sbjct: 121 QFRTRALPAFLNGSTWLVRLHSPTSGVPYGVAMALAALVVFPQTHWMT 168
>gi|270262336|ref|ZP_06190608.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Serratia odorifera 4Rx13]
gi|270044212|gb|EFA17304.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Serratia odorifera 4Rx13]
Length = 235
Score = 77.2 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLV 64
++ V L L+ A D ++P+R+++ +L + LL +V
Sbjct: 66 LLHRVVLLPVAAVLIALAFIDWRHRLLPDRLTLPLLWAGLLVNQQGYFTSLAEAVSGAVV 125
Query: 65 GLIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + + +G GD KLL + W GW + A +++
Sbjct: 126 GYLSLWLLNAAYRRRHQRDGIGQGDFKLLAALGAWVGWPALPMLVTGAAATGLCAVAIAC 185
Query: 121 LTVRMITNHIP 131
L +
Sbjct: 186 LMRKPGWQTPL 196
>gi|91786745|ref|YP_547697.1| type 4 prepilin peptidase 1 [Polaromonas sp. JS666]
gi|91695970|gb|ABE42799.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Polaromonas sp. JS666]
Length = 285
Score = 77.2 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 23/175 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLL 63
+ + V+ L+ AL D + ++P+ +++ +L + L+ A L +
Sbjct: 127 LAALVWCGFSAALLVLALIDWDTTLLPDDITLPLLWAGLIVAALQWNPAVNLYSALWGAI 186
Query: 64 VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
G + + + F MG GD KL + WFGW L
Sbjct: 187 AGYLSLWLVYWAFKLVTGKEGMGYGDFKLFAALGAWFGWQALIPMILMAS---------- 236
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
I I + +P+G ++ G + + +GL
Sbjct: 237 ------IIGAIIGIALKFSSGLREGGYVPFGPFLAGAGFTAMVFGPQSILQFVGL 285
>gi|90419762|ref|ZP_01227671.1| putative peptidase A24A, prepilin type IV [Aurantimonas
manganoxydans SI85-9A1]
gi|90335803|gb|EAS49551.1| putative peptidase A24A, prepilin type IV [Aurantimonas
manganoxydans SI85-9A1]
Length = 170
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M A+ +I PF +++AA SDL S I NRVSI++ +F + A+ GM I HL +G
Sbjct: 1 MTALAILVIFPFAMLYAAASDLVSMTIANRVSILLALAFPVVAYAAGMAPGAIGAHLGIG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L+ +CF FA MGGGD KLL +TAVWFG TP L ++ F +I GG+L++ +LT+R
Sbjct: 61 LVCLTVCFGMFAAGWMGGGDAKLLAATAVWFGPTPMLLEYILFASIYGGLLTIGLLTIR- 119
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
F+ + + IPYGIA+ + GL Y S +A
Sbjct: 120 AFLQPVTGVAFIDRLLERETGIPYGIALGLAGLTVYSGSVWIDIAARS 167
>gi|209519111|ref|ZP_03267917.1| Prepilin peptidase [Burkholderia sp. H160]
gi|209500483|gb|EEA00533.1| Prepilin peptidase [Burkholderia sp. H160]
Length = 313
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVG 65
+ + L+ + D+ + ++P+ +++ +L + L+ F L + G
Sbjct: 158 LTALAAFGLCATLLAMSAIDIDTHLLPDSLTLPLLWAGLIVNFNGMFTNLHGAVLGAIFG 217
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V F MG GD KLL + W GW P+ + A+ G ++ +
Sbjct: 218 YLVLWAVHWVFKLVRGVEGMGYGDFKLLAALGAWLGW-PALPQIVLIAAVAGAVIGLAAT 276
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +P+G ++ GG ++ +AL G
Sbjct: 277 WRGR---------------MRFEEPLPFGPFLAAGGALTLFVGTPLYLALGG 313
>gi|113869210|ref|YP_727699.1| Type IV pilus prepilin leader peptidase 1 [Ralstonia eutropha H16]
gi|113527986|emb|CAJ94331.1| Type IV pilus prepilin leader peptidase 1 [Ralstonia eutropha H16]
Length = 304
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 54/148 (36%), Gaps = 21/148 (14%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFCFFAF--- 78
+ D + ++P+++++ +L LL + + G +V + F
Sbjct: 164 TMIDADTQLLPDQITLPLLWLGLLLNLGGVFVTLPDAVIGAAAGYLVLWTAYWLFRLVRG 223
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GD KL+ + W GW + + + +++G + + + +R
Sbjct: 224 KEGMGFGDFKLMAALGAWLGWQ-ALPALVLLSSVVGVLFGLANIALRRQ----------- 271
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSY 165
P+G I++ G++
Sbjct: 272 ----ERDTPFPFGPFIALAGVVVLLFGP 295
>gi|296122070|ref|YP_003629848.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
gi|296014410|gb|ADG67649.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
Length = 218
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 7/147 (4%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M MVF A L+ AA +DL I N +++ + +A
Sbjct: 4 MNPQTMVFLAGVLVLT---TTAAYTDLRYFRIYNWLTLPAFALGWIYQV-AFYGLPGLAD 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF---LFFVAILGGILS 117
L I F + F FA GGGD KL+ + +VW GW + + + FVAI ++
Sbjct: 60 AGLGFAIGFGLFFLLFAIGASGGGDTKLMGALSVWLGWKLTLYTVVLTILFVAIGSVVML 119
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMK 144
++ + R ++ K K
Sbjct: 120 IWSVLRRGVSKTREDLRASTLKDENGK 146
>gi|88704111|ref|ZP_01101826.1| Peptidase A24A, prepilin type IV [Congregibacter litoralis KT71]
gi|88701938|gb|EAQ99042.1| Peptidase A24A, prepilin type IV [Congregibacter litoralis KT71]
Length = 294
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 21/171 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
+ +L+ + L+ A+ D+ + ++P+ +++ +L + LL FL + L G
Sbjct: 136 LSLIAYLLLTWTLIALAVIDIDTQLLPDDLTLPLLWAGLLFNVFLGPVSPVDAILGAAGG 195
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + F MG GD KLL + W GW + L A+ + + I
Sbjct: 196 YLLLWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGWQSLPIIILLSSAVGAVLGILIIA 255
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+P+G ++ G IS +
Sbjct: 256 AQGK----------------DRSQPLPFGPYLATAGWISLLWGSALSTLFL 290
>gi|124265700|ref|YP_001019704.1| signal peptidase [Methylibium petroleiphilum PM1]
gi|124258475|gb|ABM93469.1| signal peptidase [Methylibium petroleiphilum PM1]
Length = 283
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 61/171 (35%), Gaps = 21/171 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIV 68
+ L+ + D + ++P+ +++ +L + L+ A L + + G +
Sbjct: 129 LAWCAFVAVLLALSGIDWDTTLLPDSLTLPLLWAGLVAAALGWTLPLSTSVWGAVFGYLS 188
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ F MG GD KLL + W GW + +++G I+ + +
Sbjct: 189 LWSVYWLFKLTTGKEGMGAGDFKLLAALGAWLGWQMLLP-IVLGASLIGAIVGIAM---- 243
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ + +P+G ++ GL+ + +G +
Sbjct: 244 -----------KLAGALHEGRYVPFGPFLAGAGLVVLYAGAERVMGWLGWA 283
>gi|157373564|ref|YP_001472164.1| prepilin peptidase [Shewanella sediminis HAW-EB3]
gi|157315938|gb|ABV35036.1| Prepilin peptidase [Shewanella sediminis HAW-EB3]
Length = 303
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 21/162 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ F L+ DL ++P+++++ +L LL + G
Sbjct: 147 EFIFATVLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLLINLNGTFASPTDAMIGAAAGY 206
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL WFGW L L + G I+ + ++
Sbjct: 207 LSLWSVFWAFKLLTGKEGMGYGDFKLLAVFGAWFGWQMLPLIILLSSLV-GAIVGIGLIV 265
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ I N IP+G I+ G I+
Sbjct: 266 TKKI---------------NKTNPIPFGPYIAAAGWIAMIWG 292
>gi|304320645|ref|YP_003854288.1| pilus assembly protein prepilin peptidase subunit [Parvularcula
bermudensis HTCC2503]
gi|303299547|gb|ADM09146.1| pilus assembly protein prepilin peptidase subunit [Parvularcula
bermudensis HTCC2503]
Length = 164
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 76/161 (47%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M S + L+ P L AA+ DL S IPNRV+ + ++ L A +G+ + + +
Sbjct: 1 MFSSVISLVYPALLSVAAVYDLTSFKIPNRVTAALAVAWPLCALAVGIPFTMALSSVAFA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F FA +GGGDVKLL +T +W G + L+ + GG+ + R+
Sbjct: 61 FGILAAGFALFAIGKLGGGDVKLLAATTLWVGPALALEFVLWTMIFGGGLAFALLSFRRL 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ ++ + K +PYG+AI+ GL+ + +
Sbjct: 121 PLPVNVMSTGWLFDLYNRKKDMPYGVAIAASGLMLWSKTPF 161
>gi|121603679|ref|YP_981008.1| prepilin peptidase [Polaromonas naphthalenivorans CJ2]
gi|120592648|gb|ABM36087.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Polaromonas naphthalenivorans CJ2]
Length = 283
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 55/174 (31%), Gaps = 23/174 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLLV 64
+ V+ L+ A+ D + ++P+ +++ +L + L+ A L +
Sbjct: 126 TTLVWCGFSAVLLALAMIDWDTTLLPDDMTLPLLWTGLIAAALQWNPAVSLSAALWGAVA 185
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + + F MG GD KL + WFGW L I I
Sbjct: 186 GYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWPALVPMILMASVIGAIIGIAM- 244
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+G ++ G + + +GL
Sbjct: 245 ---------------KFSSGLREGGYVPFGPFLAGAGFTAMIFGPQSILQFVGL 283
>gi|146305808|ref|YP_001186273.1| prepilin peptidase [Pseudomonas mendocina ymp]
gi|145574009|gb|ABP83541.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Pseudomonas mendocina ymp]
Length = 289
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ + E + G
Sbjct: 131 QAGAMLVLAWGLLAMSLIDADHQILPDVLVLPLLWLGLIVNYFGLFTNLEDALWGAIAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F MG GD KLL W GW L+ L +++G +L V +L
Sbjct: 191 LSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVILLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + + + +
Sbjct: 250 LRGS---------------DSSTPIPFGPYLAIAGWIALLWGDVITGSYLKFA 287
>gi|294788002|ref|ZP_06753246.1| leader peptidase PilD [Simonsiella muelleri ATCC 29453]
gi|294484295|gb|EFG31978.1| leader peptidase PilD [Simonsiella muelleri ATCC 29453]
Length = 303
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 57/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
+ ++ D + ++P+ ++ ++ LL + +G ++ L ++G + +
Sbjct: 151 CLLTAMVIAMTFIDADTQILPDDLTKPLVWLGLLFNWRMGFVSWQQALLGAVIGYMSLYL 210
Query: 72 CF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KLL + W G + +++G + ++
Sbjct: 211 LNKIHVILRGIDGMGQGDFKLLAAIGAWVGVAN-LPIVVLMASVIGIVAALV-------- 261
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K + +G +++ G + +A+
Sbjct: 262 -----------KRVTKSQPMAFGPCLAIAGWFIFLFHQQATMAITWW 297
>gi|317129791|ref|YP_004096073.1| prepilin peptidase [Bacillus cellulosilyticus DSM 2522]
gi|315474739|gb|ADU31342.1| Prepilin peptidase [Bacillus cellulosilyticus DSM 2522]
Length = 250
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 18/156 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L L+ +SDL + +IP++V I+ L F++ + + + L VG
Sbjct: 99 ELPIALAFISLLMIITVSDLKTMLIPDKVLIIFLVIFIVLRLVHPLTPWWDSLLGASVGF 158
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
V ++ MGGGD+KL + G+ ++ I + + ++T +
Sbjct: 159 GVLLLLAIVSK-GGMGGGDIKLFGVIGIILGFYGVLVTLFLASFIGAIVGGIGLVTKK-- 215
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
N IP+G I++G +ISY
Sbjct: 216 --------------VRRGNPIPFGPFIAVGAIISYF 237
>gi|171316225|ref|ZP_02905448.1| Prepilin peptidase [Burkholderia ambifaria MEX-5]
gi|171098639|gb|EDT43436.1| Prepilin peptidase [Burkholderia ambifaria MEX-5]
Length = 303
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 149 AALAAFGLCAALLAMSAIDIRTGYLPDSMTLPLLWAGLALNLGGTFTSLRSAVVGAMAGY 208
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD+KLL + W GW + + F A+ G I+ +
Sbjct: 209 LFLWSIYWLFKWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAIVGLVATW 267
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F +AL G
Sbjct: 268 RGR---------------MRFEEPIPFGPFLAAGGVATLFFGTPFYLALGG 303
>gi|206561784|ref|YP_002232549.1| type IV prepilin leader peptide type M1 [Burkholderia cenocepacia
J2315]
gi|198037826|emb|CAR53770.1| type IV prepilin leader peptide type M1 [Burkholderia cenocepacia
J2315]
Length = 303
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFA--- 77
+ D+ + +P+ +++ +L + L+ + + G + + F
Sbjct: 163 MSAIDIRTGYLPDSMTLPLLWAGLVLNLGGTFASLRSAVIGAMAGYLFLWSIYWLFKWLR 222
Query: 78 -FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+G GD+KLL + W GW + + F A+ G ++ +
Sbjct: 223 GIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAVVGLVATWRGR----------- 270
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F AL G
Sbjct: 271 ----MRFEEPIPFGPFLAAGGVATLFFGTPFYAALGG 303
>gi|254246406|ref|ZP_04939727.1| Type II secretory pathway, prepilin signal peptidase PulO
[Burkholderia cenocepacia PC184]
gi|124871182|gb|EAY62898.1| Type II secretory pathway, prepilin signal peptidase PulO
[Burkholderia cenocepacia PC184]
Length = 303
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFA--- 77
+ D+ + +P+ +++ +L + L+ + + G + + F
Sbjct: 163 MSAIDIRTGYLPDSMTLPLLWAGLVLNLGGTFTSLRSAVIGAMAGYLFLWSIYWLFKWLR 222
Query: 78 -FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+G GD+KLL + W GW + + F A+ G ++ +
Sbjct: 223 GIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAVVGLVATWRGR----------- 270
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F AL G
Sbjct: 271 ----MRFEEPIPFGPFLAAGGVATLFFGTPFYAALGG 303
>gi|291284346|ref|YP_003501164.1| putative prepilin peptidase A [Escherichia coli O55:H7 str. CB9615]
gi|290764219|gb|ADD58180.1| Putative prepilin peptidase A [Escherichia coli O55:H7 str. CB9615]
Length = 311
Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 168 ALAVMILSAWLIAASIIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 227
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 228 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 283
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 284 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 311
>gi|222056163|ref|YP_002538525.1| peptidase A24A domain protein [Geobacter sp. FRC-32]
gi|221565452|gb|ACM21424.1| peptidase A24A domain protein [Geobacter sp. FRC-32]
Length = 263
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 21/180 (11%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE---- 56
+K + I LV DL +IP+ +S+ + + +F L
Sbjct: 94 IKFGPTLTFLFLFIFSSALVTITFIDLEHQIIPDIISLPGIIIGFVASFFLPWLGWKNSL 153
Query: 57 -LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
+ L L+V MGGGD+KLL + GW + +
Sbjct: 154 IGMLLGGGSLLVVAYGYQFLTKKEGMGGGDIKLLAMMGAFLGWRSVPFIIFVASLVGSIV 213
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+L + K IP+G ++ L+ M L+
Sbjct: 214 GVTLMLVQKK----------------DSKLAIPFGPFLAFAALLYVFYGREIIWWYMSLA 257
>gi|320352430|ref|YP_004193769.1| type 4 prepilin peptidase 1 [Desulfobulbus propionicus DSM 2032]
gi|320120932|gb|ADW16478.1| type 4 prepilin peptidase 1 [Desulfobulbus propionicus DSM 2032]
Length = 260
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 21/156 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-----LIALHL 62
V+ + L+ D+ +IP+R+S+ + + ++ I
Sbjct: 100 ELLVYFVFSAALLVIIFIDIHHQIIPDRISLPGIVIGFAGSLVIDQITWQQSALGILFGG 159
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ V MGGGD+KLL + GW + + ++
Sbjct: 160 GILYAVAWGYMALTKREGMGGGDIKLLAMIGAFLGWQSLLYVIFSSSVAGCVVGGIAMVK 219
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ +IP+G +++ L
Sbjct: 220 QGRGG----------------QTRIPFGPFLAIAAL 239
>gi|147677479|ref|YP_001211694.1| type II secretory pathway, prepilin signal peptidase PulO and
related peptidases [Pelotomaculum thermopropionicum SI]
gi|146273576|dbj|BAF59325.1| type II secretory pathway, prepilin signal peptidase PulO and
related peptidases [Pelotomaculum thermopropionicum SI]
Length = 250
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 16/167 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
A ++ L+ AA D +IP++++++ + + L A+L+ D L +
Sbjct: 98 QGAAMVLFFALLITAAFIDFKHQIIPDKLAVLGIIAGLPLAWLVSADRLKSGLLGFLAAG 157
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
++ + MGGGDVKL ++ GW ++ G + + T R
Sbjct: 158 AIMLAIALASRGGMGGGDVKLSAVMGLFLGWPAVLVALFLAFLAGGAVGLFLLATGRK-- 215
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K+ +P+G +++GG++S + Y +G+
Sbjct: 216 --------------SRKDAVPFGPYLALGGVVSAFEGYRIIEWYLGM 248
>gi|53803862|ref|YP_114524.1| leader peptidase PilD [Methylococcus capsulatus str. Bath]
gi|53757623|gb|AAU91914.1| leader peptidase PilD [Methylococcus capsulatus str. Bath]
Length = 289
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 55/174 (31%), Gaps = 21/174 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ A DL ++P+ +++ +L LL E + G
Sbjct: 129 QALAACALTAGLIALAFIDLDHLVLPDDITLPLLWLGLLLNAQGLFCSLETALYGAVAGY 188
Query: 67 IVFI----ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ MG GD KLL W GW P + F +I G ++ L
Sbjct: 189 LLLWTVHRGFLLLTGREGMGFGDFKLLAMLGAWMGW-PMLPVIILFSSISGAVIGSVALA 247
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
V IP+G ++ GG I+ A +A
Sbjct: 248 VGGKG---------------RDTPIPFGPFLAAGGWIALLWGNALNDAYWRWAA 286
>gi|86748909|ref|YP_485405.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2]
gi|86571937|gb|ABD06494.1| Peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2]
Length = 173
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 81/168 (48%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
+ L+ P + FAA SDLF+ I NRVS++++ FL A + GM LHL G
Sbjct: 2 IADILRLLLFPALMAFAAASDLFTMTISNRVSLLLVAGFLALAPMSGMSLADFGLHLGAG 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ V I F FA +GGGD K+ + A+WFG+ L+ G + + + +
Sbjct: 62 MTVLAIAFGCFAMGWIGGGDAKVAAAAALWFGFAHLMDFLLYASLFGGALTLLLLGFRQW 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ ++ + + IPYGIA+++G L YP + K +G
Sbjct: 122 PLPYPLAGQSWLLRLHAKETGIPYGIALAIGALAVYPQTEWIKAVDLG 169
>gi|328675853|gb|AEB28528.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase
[Francisella cf. novicida 3523]
Length = 282
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 23/161 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ S + + D ++P+ +++ +L ++ + + + E ++G
Sbjct: 123 IQSLALITLSSFFIPLFFIDAKHQILPDSLTLPLLWLGIILNYYHVFTNLEQSVWGAIIG 182
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F + G GD KLL + WFG+ + I + +
Sbjct: 183 YLSLWLVFWIYKIFTGKEGFGYGDFKLLAAVGAWFGYPMLLYTIFVSCIFGIVIAIIINI 242
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ IP+G AI +
Sbjct: 243 IAKRTNV------------------IPFGPAIILATFFYLL 265
>gi|115525747|ref|YP_782658.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
BisA53]
gi|115519694|gb|ABJ07678.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
BisA53]
Length = 174
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 78/164 (47%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + P + FAA SDL + I NRVS++++ F A L GM ++ + +H G
Sbjct: 3 LDLLRLFLFPALMAFAAASDLLTMTISNRVSLLLVLGFFGMALLSGMGWQAVLMHASAGG 62
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
V ++ F FA +GGGD K+ ++ A+WFG+ ++ G + + + +
Sbjct: 63 TVLLVAFGCFAMGWIGGGDAKVASAAALWFGFDQLLQYLVYASLFGGALTLMLLQFRQWP 122
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ ++ + IPYGIA++ G L+ YP + +
Sbjct: 123 LPGVLRGQPWLLRLHSNATGIPYGIALATGALMIYPHTAWIRAV 166
>gi|92114298|ref|YP_574226.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Chromohalobacter salexigens DSM 3043]
gi|91797388|gb|ABE59527.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Chromohalobacter salexigens DSM 3043]
Length = 280
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 21/174 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIA 59
M + + L+ A+ DL + ++P+ +++ +L + L+
Sbjct: 119 MVHGATWSALAWGGLCLTLLVVAVIDLRTQLLPDIITLPLLWAGLIYQLVFQPYWLSNAV 178
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
+ L G ++ + F MG GD KLL + WFGWT + + + I
Sbjct: 179 IGALAGYLLLWGFYWLFKWITGKEGMGYGDFKLLAALGAWFGWTMLPILLILSAGLGAVI 238
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ LT + +P+G +++ G ++ +
Sbjct: 239 GGLLQLTHPRL----------------RGMPLPFGPFLALAGWVAVLFGAPLRA 276
>gi|107021654|ref|YP_619981.1| prepilin peptidase [Burkholderia cenocepacia AU 1054]
gi|116688600|ref|YP_834223.1| prepilin peptidase [Burkholderia cenocepacia HI2424]
gi|105891843|gb|ABF75008.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Burkholderia cenocepacia AU 1054]
gi|116646689|gb|ABK07330.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Burkholderia cenocepacia HI2424]
Length = 303
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFA--- 77
+ D+ + +P+ +++ +L + L+ + + G + + F
Sbjct: 163 MSAIDIRTGYLPDSMTLPLLWAGLVLNLGGTFTSLRSAVIGAMAGYLFLWSIYWLFKWLR 222
Query: 78 -FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+G GD+KLL + W GW + + F A+ G ++ +
Sbjct: 223 GIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAVVGLVATWRGR----------- 270
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F AL G
Sbjct: 271 ----MRFEEPIPFGPFLAAGGVATLFFGTPFYAALGG 303
>gi|149927149|ref|ZP_01915406.1| prepilin cysteine protease (C20) PilD [Limnobacter sp. MED105]
gi|149824088|gb|EDM83309.1| prepilin cysteine protease (C20) PilD [Limnobacter sp. MED105]
Length = 279
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 21/168 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
V + ++ L+ AL DL + ++P+ +++ +L + LL + + +G
Sbjct: 127 VVALALMVFAASLLALALIDLDTYLLPDSITLPLLWAGLLFNLFVEFVPLASAVSGAAMG 186
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + + F MG GD KLL + W G T S S + F ++ G + + I
Sbjct: 187 YLVLWLIYQLFKLATGKEGMGYGDFKLLAAIGAWLGVT-SLFSVVLFASVSGIVFGLIIQ 245
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
T+R + P+G + MG L L K
Sbjct: 246 TIRGKK---------------KTDAFPFGPCLVMGALAWMAGFDLTKW 278
>gi|254449017|ref|ZP_05062471.1| type II Secretion PilD [gamma proteobacterium HTCC5015]
gi|198261411|gb|EDY85702.1| type II Secretion PilD [gamma proteobacterium HTCC5015]
Length = 294
Score = 75.7 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 21/166 (12%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIIC 72
+ L+ + D+ M+P+ +++ +L LL + +D L +G +
Sbjct: 144 VLTLYLIAMSGIDIKIQMLPDAMTLPLLWLGLLLSLKPLFVDPSQAILGATLGYLSLWSV 203
Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ F MG GD KLL W G + + A+ G IL + ++ ++
Sbjct: 204 YWLFKLVTGKEGMGYGDFKLLALIGAWTGPS-MLPLVIVLSAMSGAILGLGLILIQGR-- 260
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+G +++ G I++ + +
Sbjct: 261 -------------DKAQPMPFGPYLAIAGWIAFLWGDRIMDSYLAT 293
>gi|120612326|ref|YP_972004.1| type 4 prepilin peptidase 1 [Acidovorax citrulli AAC00-1]
gi|120590790|gb|ABM34230.1| type 4 prepilin peptidase 1 [Acidovorax citrulli AAC00-1]
Length = 295
Score = 75.7 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 22/153 (14%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICFCFF 76
LV A D + ++P+ +++ +L LL + + G + + F
Sbjct: 146 LVTLACIDWDTTLLPDDITLPLLWGGLLGSAFQWTSVPLFASVAGAAAGYLSLWAVYWAF 205
Query: 77 AF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
MG GD KL + WFGW L I +
Sbjct: 206 KLATGKEGMGYGDFKLFAALGAWFGWQALVPIILMASVIGALVGI--------------- 250
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
GM + N IP+G ++ GL +
Sbjct: 251 -GMKFTRGLREGNYIPFGPFLAGAGLAAMLFGP 282
>gi|89895128|ref|YP_518615.1| hypothetical protein DSY2382 [Desulfitobacterium hafniense Y51]
gi|89334576|dbj|BAE84171.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 253
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 19/173 (10%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL--TAFLLGMDYELIALH 61
+ + L+ A+ D + +P+ ++ +LG ++ G
Sbjct: 97 GSFLELGIHFYFISVLLVLAVIDWDTYRLPDVFTLPLLGVGIVAGFLLPQGPSGWESLAT 156
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L VF + + MG GD+KL+ + G+ + ++ G I + +L
Sbjct: 157 ALGVGGVFWMITRLY-PEGMGLGDIKLIAGLGAFLGFPEALIAVFIASF-TGSIGGLIML 214
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + + + +IP+G + +GG + L
Sbjct: 215 SFKKRSF---------------REQIPFGPYLVLGGWSVFFWGQNILSFYNSL 252
>gi|238792803|ref|ZP_04636434.1| Type IV prepilin peptidase [Yersinia intermedia ATCC 29909]
gi|238727911|gb|EEQ19434.1| Type IV prepilin peptidase [Yersinia intermedia ATCC 29909]
Length = 276
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 22/154 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + L+ + L+ + DL ++P+ +++ +L L+ L +VG I
Sbjct: 127 TMIGLLLIWVLITLSFIDLDCYLLPDCITLPLLWMGLILNIDNVFCSLSSAVLGAVVGYI 186
Query: 68 VFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F + MG GD KL+ + WFG + + L ++ + V
Sbjct: 187 FLWLPYWLFKLFKGIDGMGYGDFKLMAAMGAWFGVSTIPMLVLLSSSLGIIVSIVISYLS 246
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
+ I +G I + G
Sbjct: 247 KK-----------------KGGYIAFGPYICLAG 263
>gi|153207059|ref|ZP_01945856.1| type 4 prepilin peptidase PilD [Coxiella burnetii 'MSU Goat Q177']
gi|165921914|ref|ZP_02219659.1| type 4 prepilin peptidase PilD [Coxiella burnetii RSA 334]
gi|212219367|ref|YP_002306154.1| type 4 prepilin peptidase [Coxiella burnetii CbuK_Q154]
gi|120576900|gb|EAX33524.1| type 4 prepilin peptidase PilD [Coxiella burnetii 'MSU Goat Q177']
gi|165916739|gb|EDR35343.1| type 4 prepilin peptidase PilD [Coxiella burnetii RSA 334]
gi|212013629|gb|ACJ21009.1| type 4 prepilin peptidase [Coxiella burnetii CbuK_Q154]
Length = 286
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ L+ DL + ++P+ +++ L L + F + + ++G
Sbjct: 130 QALAGLLLTLVLIVLFFIDLKTQLLPDAITLPTLWFGLSLSLFYMFVSPYQAIFGAILGY 189
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ I F+ MG GD K+++ WFG L+ L LG I S +L
Sbjct: 190 GLLWITAAFYQLIRKKEGMGRGDFKMVSMLGAWFGP-GIVLNVLLLAVFLGLITSFMLLA 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ I +K IP+G I++ G IS + L+
Sbjct: 249 LKKI---------------SVKQPIPFGPFIAVAGWISLLSGPVLIHKLIS 284
>gi|15599724|ref|NP_253218.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa PAO1]
gi|12230898|sp|P22610|LEP4_PSEAE RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; AltName: Full=Protein pilD;
AltName: Full=Protein secretion protein XCPA; Includes:
RecName: Full=Leader peptidase; AltName: Full=Prepilin
peptidase; Includes: RecName: Full=N-methyltransferase
gi|9950771|gb|AAG07916.1|AE004867_2 type 4 prepilin peptidase PilD [Pseudomonas aeruginosa PAO1]
gi|151642|gb|AAA26023.1| xcpA [Pseudomonas aeruginosa]
Length = 290
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 131 QAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGAVFGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G IL V +L
Sbjct: 191 LSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAILGVIMLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + +
Sbjct: 250 LRNA---------------ESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFA 287
>gi|218893623|ref|YP_002442492.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa LESB58]
gi|254244660|ref|ZP_04937982.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa 2192]
gi|126198038|gb|EAZ62101.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa 2192]
gi|218773851|emb|CAW29665.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa LESB58]
Length = 290
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 131 QAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGAVFGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G IL V +L
Sbjct: 191 LSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAILGVIMLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + +
Sbjct: 250 LRNA---------------ESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFA 287
>gi|77919733|ref|YP_357548.1| prepilin peptidase [Pelobacter carbinolicus DSM 2380]
gi|77545816|gb|ABA89378.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Pelobacter carbinolicus DSM 2380]
Length = 259
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 21/177 (11%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL-----I 58
S + V+ + +V + DL +IP+ +S+ + L +F + I
Sbjct: 96 SGLFVIPVYWLFVASMVTISFIDLDHKIIPDVISLPGIVLGFLLSFAVPWLTWQDSILGI 155
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
L +V + + MGGGDVKLL + GW ++ G ++ V
Sbjct: 156 LLGGGSLYLVAKVYYWMTHVEGMGGGDVKLLAMIGAFLGWKAILPVIFL-GSLSGALVGV 214
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
++ + + IP+G ++ G +I + +
Sbjct: 215 PLMLYKRAGGKL---------------AIPFGPFLATGAVIYLLLGEQLIQWYISFA 256
>gi|27529246|emb|CAC83039.1| Yts1O protein [Yersinia enterocolitica (type 0:8)]
Length = 265
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 59/155 (38%), Gaps = 21/155 (13%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFC 74
+ L+ + D+ ++P+ +++ +L + LL + + + G ++ +
Sbjct: 125 SWTLIALTMIDIDHLLLPDNLTLPLLWAGLLFHLFDDILPLSDAVIGAVSGYLILWSLYW 184
Query: 75 FF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F ++G GD KLL + W GW + S L ++ G ++ +R +
Sbjct: 185 AFWWVTRREVLGYGDFKLLAALGAWLGW-MALPSLLLTASLTGIAFALIFRLLRKRPLN- 242
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+P+G ++ G + + Y
Sbjct: 243 --------------TALPFGPFLAFSGWLLFLQQY 263
>gi|170749894|ref|YP_001756154.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM
2831]
gi|170656416|gb|ACB25471.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM
2831]
Length = 187
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 79/164 (48%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ ++ PF + +AA SDL + +IPNR+S+ +L F L A M + I H G +V
Sbjct: 24 GLLILFPFLMAYAAASDLLTMLIPNRISLALLAGFALLALTSAMSWTEIGFHCAAGAVVL 83
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ F FAF I+GGGD KL +TA+W G+ L G + +L
Sbjct: 84 LVTFTLFAFGIIGGGDAKLAAATALWLGFDGLGDYLLVASVFGGALTLAILLARTHPLPV 143
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
F K IPYGIA++ L+ P++ ++ AL G
Sbjct: 144 RIARMPFALHLHDAKTGIPYGIALAAAALLVLPETEVWTRALAG 187
>gi|254238814|ref|ZP_04932137.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa C3719]
gi|126170745|gb|EAZ56256.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa C3719]
Length = 290
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 131 QAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGAVFGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G IL V +L
Sbjct: 191 LSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAILGVIMLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + +
Sbjct: 250 LRNA---------------ESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFA 287
>gi|313107172|ref|ZP_07793372.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa 39016]
gi|310879874|gb|EFQ38468.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa 39016]
Length = 290
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 131 QAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGAVFGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G IL V +L
Sbjct: 191 LSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAILGVIMLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + +
Sbjct: 250 LRNA---------------ESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFA 287
>gi|238760619|ref|ZP_04621747.1| Type II secretory pathway, prepilin signal peptidase PulO and
peptidase [Yersinia aldovae ATCC 35236]
gi|238701152|gb|EEP93741.1| Type II secretory pathway, prepilin signal peptidase PulO and
peptidase [Yersinia aldovae ATCC 35236]
Length = 263
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 21/155 (13%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFC 74
+ L+ + D+ ++P+ +++ +L + LL + + G ++ +
Sbjct: 124 SWVLIALTMIDIDHLLLPDSLTLPLLWAGLLFHLFDDTLPLSDAVIGAASGYLILWCLYW 183
Query: 75 FF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F +G GD KLL + W GW + S L ++ G + R + +
Sbjct: 184 VFWWATRRETLGYGDFKLLAALGAWLGW-MALPSLLLTASLTGITFAFAARLFRGRSLN- 241
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+P+G ++ G + + Y
Sbjct: 242 --------------TALPFGPFLAFSGWLLFLQHY 262
>gi|296391244|ref|ZP_06880719.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa PAb1]
Length = 288
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 129 QAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALSGAVFGY 188
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G IL V +L
Sbjct: 189 LSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAILGVIMLR 247
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + +
Sbjct: 248 LRNA---------------ESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFA 285
>gi|260461951|ref|ZP_05810196.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
WSM2075]
gi|259032198|gb|EEW33464.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
WSM2075]
Length = 172
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 1/172 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + +F++ PFC++FAA+SD+ S I NRVS++++ F L A L GM++ H G
Sbjct: 1 MLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVIVFALVAPLTGMEWATYGWHFAAG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++ + F FA MGGGD KLL +TAVW G + +L +GG+L++ I+ R
Sbjct: 61 ALILAVTFGLFAMGGMGGGDAKLLAATAVWMGLNVHLVEYLVVSTFIGGLLTLAIVLYRK 120
Query: 126 ITNHIPIFGMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+ + F ++ +PYGIA+ +GGL++YPDS L AL L++
Sbjct: 121 SPLAVITGRNPFLRHFAEESAGVPYGIALGLGGLLTYPDSPLMVWALARLAS 172
>gi|123443763|ref|YP_001007734.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Yersinia enterocolitica subsp. enterocolitica 8081]
gi|122090724|emb|CAL13600.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Yersinia enterocolitica subsp. enterocolitica 8081]
Length = 261
Score = 74.9 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 59/155 (38%), Gaps = 21/155 (13%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFC 74
+ L+ + D+ ++P+ +++ +L + LL + + + G ++ +
Sbjct: 121 SWTLIALTMIDIDHLLLPDNLTLPLLWAGLLFHLFDDILPLSDAVIGAVSGYLILWSLYW 180
Query: 75 FF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F ++G GD KLL + W GW + S L ++ G ++ +R +
Sbjct: 181 AFWWVTRREVLGYGDFKLLAALGAWLGW-MALPSLLLTASLTGIAFALIFRLLRKRPLN- 238
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+P+G ++ G + + Y
Sbjct: 239 --------------TALPFGPFLAFSGWLLFLQQY 259
>gi|39997141|ref|NP_953092.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Geobacter sulfurreducens PCA]
gi|39984031|gb|AAR35419.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Geobacter sulfurreducens PCA]
gi|307634972|gb|ADI84877.2| type IV prepilin-like proteins leader peptide processing enzyme
[Geobacter sulfurreducens KN400]
Length = 259
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 70/181 (38%), Gaps = 21/181 (11%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIA 59
+K + A + LV + DL +IP+ +S+ + + +F L +
Sbjct: 94 LKFGPTLTFAALFVFCSALVAISFIDLDHQIIPDVISLPGIVLGFVLSFFLPWLGWLNSL 153
Query: 60 LHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
+ + G ++ + MGGGD+KLL + GW + +F +++G +
Sbjct: 154 IGIAAGGGSLLLVAWLYERLTGKEGMGGGDIKLLAMMGAFLGWR-AVPFIIFASSLVGSV 212
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ + ++ ++ K IP+G +++G L+ + + +
Sbjct: 213 IGLTLMMLQKK---------------DSKLAIPFGPFLALGALLYIFFGKAIILWYLSIG 257
Query: 176 A 176
A
Sbjct: 258 A 258
>gi|187250653|ref|YP_001875135.1| type II secretion system subunit O [Elusimicrobium minutum Pei191]
gi|186970813|gb|ACC97798.1| Type II secretion system subunit [Elusimicrobium minutum Pei191]
Length = 260
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 27/169 (15%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------- 53
+ +++ V L+ + L+ +++ D+ +IP+R SI ++ L +
Sbjct: 93 RYGITIWTGVVLVVVYSLIISSVIDIKIMIIPDRFSIGLIVWGLAFFWCNPNFSGTTLQM 152
Query: 54 ---DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
A+ L V ++ + F MGGGD+KL+ GW + +
Sbjct: 153 FGQSLLGAAVGFGGLLAVALLGYALFRKEAMGGGDIKLMGGVGALLGWQGVITTLVI-AC 211
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
++G + S+F++ + + IP+G +S G L+
Sbjct: 212 LIGLVYSIFLMVTKRA---------------DKGSAIPFGPFLSFGALV 245
>gi|151067|gb|AAA25734.1| pilin biogenesis protein (pilD) [Pseudomonas aeruginosa]
Length = 290
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 131 QAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGAVFGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G IL V +L
Sbjct: 191 LSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAILGVIMLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + +
Sbjct: 250 LRNA---------------ESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFA 287
>gi|218779098|ref|YP_002430416.1| peptidase A24A domain protein [Desulfatibacillum alkenivorans
AK-01]
gi|218760482|gb|ACL02948.1| Peptidase A24A domain protein (type IV prepilin-like leader
peptidase (prepilin FT peptidase / N-methyltransferase)
[Desulfatibacillum alkenivorans AK-01]
Length = 266
Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 20/170 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGL 66
+ V+ + L+ DL +IPN +++ + + +FLL + + + VG
Sbjct: 105 AALVYYLLIATLLVITFIDLDHMIIPNIITLPGIPIGIAASFLLPELSLAQSLIGVAVGG 164
Query: 67 IVFI----ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + MG GDVKLL +FG + + + + + I
Sbjct: 165 GGLFAVSELFYLLRKKEGMGMGDVKLLGMLGAFFGVKGVLFTIMAGAFVGTFVGLILIPL 224
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
R + +IP+G ++ G ++ +
Sbjct: 225 NRSKGLDL---------------RIPFGPFLASGAIVYIFWGEFLIYKYL 259
>gi|115350533|ref|YP_772372.1| prepilin peptidase [Burkholderia ambifaria AMMD]
gi|115280521|gb|ABI86038.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Burkholderia ambifaria AMMD]
Length = 303
Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 149 AALAAFGLCAALLAMSAIDIQTGYLPDSMTLPLLWAGLALNLGGTFTSLRSAVVGAMAGY 208
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD+KLL + W GW + + F A+ G I+ +
Sbjct: 209 LFLWSIYWLFKWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAIVGLVATW 267
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F +AL G
Sbjct: 268 RGR---------------MRFEEPIPFGPFLAAGGVATLFFGTPFYLALGG 303
>gi|167627812|ref|YP_001678312.1| type IV pili leader peptidase and methylase [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|241668373|ref|ZP_04755951.1| type IV pili leader peptidase and methylase [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254876906|ref|ZP_05249616.1| type IV pili leader peptidase and methylase [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|167597813|gb|ABZ87811.1| type IV pili leader peptidase and methylase [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|254842927|gb|EET21341.1| type IV pili leader peptidase and methylase [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 282
Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 23/161 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ + + D ++P+ +++ ++ ++ + + ++G
Sbjct: 123 IQAVALAGLSTFFIPLFFIDAKYQILPDSLTLPLVWIGIILNYYNVFTTLDQSVWGAIIG 182
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F + G GD KLL + WFG+ + F I G ++++ I
Sbjct: 183 YLSLWSVFWIYKILTGKEGFGYGDFKLLAAIGAWFGYPMLLYTI-FASCIFGILIAIGIN 241
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ N IP+G AI +
Sbjct: 242 LIAK-----------------RTNVIPFGPAIILATFFYLL 265
>gi|238796559|ref|ZP_04640066.1| Type IV prepilin peptidase [Yersinia mollaretii ATCC 43969]
gi|238719537|gb|EEQ11346.1| Type IV prepilin peptidase [Yersinia mollaretii ATCC 43969]
Length = 280
Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 22/159 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLI 67
+ L + L+ + DL ++P+ ++ +L LL G+ + +VG +
Sbjct: 125 TIASLFLVWALIVLSFIDLDCYLLPDCITFPLLWCGLLFNINNGLSSLPFAVIGAVVGYL 184
Query: 68 VFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+++ WFG + + L V
Sbjct: 185 FLWLPYWLLKFFRGIEGMGYGDFKLMSALGAWFGLSAIPVLILLSSCFGIMAYIVI---- 240
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
S I +G I++ G+I
Sbjct: 241 -------------HKTSKNKVKYIAFGPYIALSGVIYLL 266
>gi|85712518|ref|ZP_01043566.1| Type II pili prepilin peptidase PilD/XcpA [Idiomarina baltica
OS145]
gi|85693652|gb|EAQ31602.1| Type II pili prepilin peptidase PilD/XcpA [Idiomarina baltica
OS145]
Length = 286
Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 24/171 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
+ VF L+ + D ++P+ ++ +L LL + + + +V
Sbjct: 127 ISFWVFGTALSLLIAMTVIDYQHQLLPDNLTYPLLWLALLWSISPLSTVTPSQAIIGAVV 186
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + F MG GD KLL + + + G T + F A+ G ++ + +
Sbjct: 187 GYLSLWSLYWVFKLLTGKEGMGYGDFKLLAALSAFTGVT-LLPVTVIFSAVAGILIGLAV 245
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ IP+G +++GG+ISY +
Sbjct: 246 AIKHKQSV-----------------PIPFGPFLAIGGVISYLWGETLLQSY 279
>gi|332678296|gb|AEE87425.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase
[Francisella cf. novicida Fx1]
Length = 282
Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 23/161 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ S + + D ++P+ +++ +L ++ + E ++G
Sbjct: 123 LQSLALVTLASFFIPLFFIDAKHQILPDSLTLPLLWLGIILNYYHTFTTLEQSVWGAIIG 182
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F + G GD KLL + WFG+ + I L
Sbjct: 183 YLSLWLVFWIYKIFTGKEGFGYGDFKLLAAVGAWFGYPMLLYTIFASCIFGIIIAIAINL 242
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I +G AI +
Sbjct: 243 VAKRTNV------------------IAFGPAIILATFFYLL 265
>gi|93004898|ref|YP_579335.1| prepilin peptidase [Psychrobacter cryohalolentis K5]
gi|92392576|gb|ABE73851.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Psychrobacter cryohalolentis K5]
Length = 299
Score = 74.5 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 23/167 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ + L+ D + ++P+R++ + G L LL+G + I
Sbjct: 149 LVLVWTLIALTGIDFDTQLLPDRLTFPLAGLGLAVNSQGWFVPPTQSIWGLLLGFLSLWI 208
Query: 72 ----CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + MG GD KLL W G L L + + + +
Sbjct: 209 VVKIFYLITKKHGMGQGDFKLLAVLGAWLGPMMLPLIILLSSLLGSIVGLILM------- 261
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K +G I++ G+++ +G+
Sbjct: 262 -----------KKQGESKPFAFGPYIAIAGIVALLYGSDIVNWYLGM 297
>gi|107099888|ref|ZP_01363806.1| hypothetical protein PaerPA_01000909 [Pseudomonas aeruginosa PACS2]
Length = 290
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 131 QAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGAVFGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G IL V +L
Sbjct: 191 LSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAILGVIMLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + +
Sbjct: 250 LRNA---------------ESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFA 287
>gi|170731899|ref|YP_001763846.1| prepilin peptidase [Burkholderia cenocepacia MC0-3]
gi|169815141|gb|ACA89724.1| Prepilin peptidase [Burkholderia cenocepacia MC0-3]
Length = 303
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFA--- 77
+ D+ + +P+ +++ +L + L+ + + G + + F
Sbjct: 163 MSAIDIRTGYLPDSMTLPLLWAGLVLNLGGTFTSLRSAVIGAMAGYLFLWSIYWLFKWLR 222
Query: 78 -FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+G GD+KLL + W GW + + F A+ G ++ +
Sbjct: 223 GIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAVVGLVATWRGR----------- 270
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F AL G
Sbjct: 271 ----MRFEEPIPFGPFLAAGGVATLFFGTPFYAALGG 303
>gi|116052560|ref|YP_792875.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa UCBPP-PA14]
gi|115587781|gb|ABJ13796.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa UCBPP-PA14]
Length = 290
Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLGDALFGAVFGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G IL V +L
Sbjct: 191 LSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAILGVIMLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + +
Sbjct: 250 LRNA---------------ESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFA 287
>gi|304312708|ref|YP_003812306.1| Type IV fimbrial biogenesis protein, prepilin cysteine protease
[gamma proteobacterium HdN1]
gi|301798441|emb|CBL46666.1| Type IV fimbrial biogenesis protein, prepilin cysteine protease
[gamma proteobacterium HdN1]
Length = 298
Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 21/170 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLI 67
A LI + L+ + D ++P+++++ +L LL + + + G +
Sbjct: 144 LAFALILTWSLICLTMIDFDYKLLPDQITLPLLWLGLLINVQGMFVPLDEAVIGAAAGYL 203
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + W GW + L + I IL +
Sbjct: 204 SLWSIYWLFKLATGKEGMGYGDFKLLGALGAWMGWKVLVVIILLSSLVGSIIGVSMILIL 263
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ I +G +++ G I++ L
Sbjct: 264 GR----------------DKQIPIAFGPYLAIAGWIAFFWGEALMGMLFR 297
>gi|195536292|ref|ZP_03079299.1| bacterial Peptidase A24 N- domain family protein [Francisella
tularensis subsp. novicida FTE]
gi|194372769|gb|EDX27480.1| bacterial Peptidase A24 N- domain family protein [Francisella
tularensis subsp. novicida FTE]
Length = 273
Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 23/161 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ S + + D ++P+ +++ +L ++ + E ++G
Sbjct: 114 LQSLALVTLASFFIPLFFIDAKHQILPDSLTLPLLWLGIILNYYHTFTTLEQSVWGAIIG 173
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F + G GD KLL + WFG+ + I L
Sbjct: 174 YLSLWLVFWIYKILTGKEGFGYGDFKLLAAVGAWFGYPMLLYTIFASCIFGIIIAIAINL 233
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I +G AI +
Sbjct: 234 VAKRTNV------------------IAFGPAIILATFFYLL 256
>gi|238026148|ref|YP_002910379.1| type IV pilus prepilin peptidase PilD [Burkholderia glumae BGR1]
gi|237875342|gb|ACR27675.1| Type IV pilus prepilin peptidase PilD [Burkholderia glumae BGR1]
Length = 296
Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGL 66
+ LV +L D+ + +P+ +++ +L + L+ +D + + G
Sbjct: 142 AALAAFGLCAMLVAMSLIDIKTGYLPDSMTLPLLWAGLVVNLWGSFVDLREAVIGAIAGY 201
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F +G GD+KLL + W GW + L A+ G ++ +
Sbjct: 202 LFLWCVFWLFKWLRGIEGIGYGDLKLLAALGAWLGW-IALPQILLVAALSGAVVGLAATW 260
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +P+G +++GG+ + F A+ G
Sbjct: 261 RGR---------------MRFEEPLPFGPFLALGGIATLLCGTPFYPAIGG 296
>gi|253689224|ref|YP_003018414.1| Prepilin peptidase [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251755802|gb|ACT13878.1| Prepilin peptidase [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 281
Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ LI LV + D+ + ++P+ +++ +L LL + + + G
Sbjct: 131 MALCGALILLSFLVVLTVIDIKTLLLPDVLTLSLLWMGLLFNLSETFVPLRDAVVGAMAG 190
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + F +G GD KLL + W GW + + + A+ G ++++
Sbjct: 191 YLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQ-ALPNLVLVAALSGLVVTLIWR 249
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
VR + +G +++GG+
Sbjct: 250 GVRKE---------------DTVKPLAFGPWLAIGGVF 272
>gi|300113118|ref|YP_003759693.1| prepilin peptidase [Nitrosococcus watsonii C-113]
gi|299539055|gb|ADJ27372.1| Prepilin peptidase [Nitrosococcus watsonii C-113]
Length = 288
Score = 74.1 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ D ++P+ +++ L L F + D + + G
Sbjct: 130 ETMAALLLSYALITLTFIDFDHQLLPDNITLPFLWFGLGLGLFEVFTDARTSLIGAITGY 189
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + + F MG GD KLL W + + +I+G +L L
Sbjct: 190 LSLWLVYHLFRLLTKKEGMGYGDFKLLALLGAWL-GWTMLPAIILLSSIVGALLGTAWL- 247
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
S + IP+G ++ G ++ + L
Sbjct: 248 --------------YLSSQHRETPIPFGPYLAAAGWLALMWGQDINQFYLSL 285
>gi|71082774|ref|YP_265493.1| type II secretion PilD [Candidatus Pelagibacter ubique HTCC1062]
gi|71061887|gb|AAZ20890.1| Type II Secretion PilD [Candidatus Pelagibacter ubique HTCC1062]
Length = 254
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 26/176 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL------TAFLLGMDYELIAL 60
+ + +F I C V DL +IPN ++ ++ LL L + +
Sbjct: 95 LTTLLFFILSICFVIIFFIDLKHFIIPNELTYPLMIIGLLKSFDPNLNTTLFPNLVNSLI 154
Query: 61 HLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
L G I+ + + MG GD KLL+ WFGW F I +
Sbjct: 155 GGLFGYIIIWLIIFIYKKLRNKEGMGLGDAKLLSVIGFWFGWASIPFVIFFSSVIALLSV 214
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
I+ + + ++IP+G + +G L+ + ++ L
Sbjct: 215 VPDIIKNKK----------------DLSSQIPFGPYLIIGNLVFLIFNEQIRLFLN 254
>gi|152984319|ref|YP_001350499.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa PA7]
gi|150959477|gb|ABR81502.1| type 4 prepilin peptidase PilD [Pseudomonas aeruginosa PA7]
Length = 290
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 131 QAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGAVFGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L +++G IL V +L
Sbjct: 191 LSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILL-SSLVGAILGVIMLR 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+R IP+G +++ G I+ + +
Sbjct: 250 LRNA---------------ASGTPIPFGPYLAIAGWIALLWGDQITRTYLQFA 287
>gi|59801995|ref|YP_208707.1| PilD [Neisseria gonorrhoeae FA 1090]
gi|194099552|ref|YP_002002682.1| PilD [Neisseria gonorrhoeae NCCP11945]
gi|239999757|ref|ZP_04719681.1| PilD [Neisseria gonorrhoeae 35/02]
gi|240014914|ref|ZP_04721827.1| PilD [Neisseria gonorrhoeae DGI18]
gi|240017362|ref|ZP_04723902.1| PilD [Neisseria gonorrhoeae FA6140]
gi|240081505|ref|ZP_04726048.1| PilD [Neisseria gonorrhoeae FA19]
gi|240113784|ref|ZP_04728274.1| PilD [Neisseria gonorrhoeae MS11]
gi|240116518|ref|ZP_04730580.1| PilD [Neisseria gonorrhoeae PID18]
gi|240118742|ref|ZP_04732804.1| PilD [Neisseria gonorrhoeae PID1]
gi|240121984|ref|ZP_04734946.1| PilD [Neisseria gonorrhoeae PID24-1]
gi|240124281|ref|ZP_04737237.1| PilD [Neisseria gonorrhoeae PID332]
gi|240126492|ref|ZP_04739378.1| PilD [Neisseria gonorrhoeae SK-92-679]
gi|240128955|ref|ZP_04741616.1| PilD [Neisseria gonorrhoeae SK-93-1035]
gi|254494544|ref|ZP_05107715.1| type IV pilus prepilin peptidase PilD [Neisseria gonorrhoeae 1291]
gi|260439725|ref|ZP_05793541.1| PilD [Neisseria gonorrhoeae DGI2]
gi|268595570|ref|ZP_06129737.1| type IV prepilin peptidase [Neisseria gonorrhoeae 35/02]
gi|268597605|ref|ZP_06131772.1| type IV prepilin peptidase [Neisseria gonorrhoeae FA19]
gi|268599856|ref|ZP_06134023.1| PilD [Neisseria gonorrhoeae MS11]
gi|268602191|ref|ZP_06136358.1| PilD [Neisseria gonorrhoeae PID18]
gi|268604456|ref|ZP_06138623.1| PilD [Neisseria gonorrhoeae PID1]
gi|268682910|ref|ZP_06149772.1| PilD [Neisseria gonorrhoeae PID332]
gi|268685076|ref|ZP_06151938.1| PilD [Neisseria gonorrhoeae SK-92-679]
gi|268687340|ref|ZP_06154202.1| PilD [Neisseria gonorrhoeae SK-93-1035]
gi|291042973|ref|ZP_06568711.1| type IV prepilin peptidase [Neisseria gonorrhoeae DGI2]
gi|293398317|ref|ZP_06642508.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Neisseria gonorrhoeae F62]
gi|2828207|sp|P33566|LEP4_NEIGO RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|996088|gb|AAC43468.1| PilD [Neisseria gonorrhoeae]
gi|59718890|gb|AAW90295.1| type IV prepilin peptidase [Neisseria gonorrhoeae FA 1090]
gi|193934842|gb|ACF30666.1| PilD [Neisseria gonorrhoeae NCCP11945]
gi|226513584|gb|EEH62929.1| type IV pilus prepilin peptidase PilD [Neisseria gonorrhoeae 1291]
gi|268548959|gb|EEZ44377.1| type IV prepilin peptidase [Neisseria gonorrhoeae 35/02]
gi|268551393|gb|EEZ46412.1| type IV prepilin peptidase [Neisseria gonorrhoeae FA19]
gi|268583987|gb|EEZ48663.1| PilD [Neisseria gonorrhoeae MS11]
gi|268586322|gb|EEZ50998.1| PilD [Neisseria gonorrhoeae PID18]
gi|268588587|gb|EEZ53263.1| PilD [Neisseria gonorrhoeae PID1]
gi|268623194|gb|EEZ55594.1| PilD [Neisseria gonorrhoeae PID332]
gi|268625360|gb|EEZ57760.1| PilD [Neisseria gonorrhoeae SK-92-679]
gi|268627624|gb|EEZ60024.1| PilD [Neisseria gonorrhoeae SK-93-1035]
gi|291013112|gb|EFE05081.1| type IV prepilin peptidase [Neisseria gonorrhoeae DGI2]
gi|291611241|gb|EFF40325.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Neisseria gonorrhoeae F62]
gi|317165048|gb|ADV08589.1| PilD [Neisseria gonorrhoeae TCDC-NG08107]
Length = 286
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
LI L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LILTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLLTGKTGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GRHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|545658|gb|AAB30050.1| type IV prepilin peptidase [Neisseria gonorrhoeae]
Length = 286
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
LI L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LILTAFLISLTFIDEDTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLLTGKTGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GRHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|316933041|ref|YP_004108023.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1]
gi|315600755|gb|ADU43290.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1]
Length = 174
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 77/156 (49%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
P +VFAA SDL + I NRVS+++L FL+ A + GM + +H+ G V + F
Sbjct: 11 FPALMVFAATSDLLTMTISNRVSLLLLAGFLVLAPMSGMSLAVFGMHVGAGAAVLAVAFG 70
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
FA +GGGD K+ + A+WFG+ L+ G + + + + ++
Sbjct: 71 CFAMGWIGGGDAKVAAAAALWFGFGDLLDFLLYASLFGGALTLLLLSFRQWPLPYVFAGQ 130
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
++ + + IPYGIA++MG L YP +
Sbjct: 131 TWLLRLHAQETGIPYGIALAMGALAVYPQTDWIGAV 166
>gi|255657461|ref|ZP_05402870.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-23m63]
gi|296449056|ref|ZP_06890846.1| possible prepilin peptidase [Clostridium difficile NAP08]
gi|296879879|ref|ZP_06903852.1| possible prepilin peptidase [Clostridium difficile NAP07]
gi|296262149|gb|EFH08954.1| possible prepilin peptidase [Clostridium difficile NAP08]
gi|296429168|gb|EFH15042.1| possible prepilin peptidase [Clostridium difficile NAP07]
Length = 260
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 18/179 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIA 59
M + +L+ L+ D+ +IP+ + I ++ L + +
Sbjct: 93 MLYGISTSTVYYLVLVSLLIIITFIDIDHFIIPDEILIFGAIFAIIFNLLFKEIPVKDSI 152
Query: 60 LHLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
+ + + MGGGD+KL ++ G S L+ L +G +
Sbjct: 153 IGFFICGGSVWLIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNSLLTALL-SVYVGAV 211
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ ++ + IPYG IS+G LI+ +
Sbjct: 212 YGICVIIISKTKGKEYNSI------------IPYGPFISVGALITILCGKQLLEFYFSM 258
>gi|294012228|ref|YP_003545688.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
UT26S]
gi|292675558|dbj|BAI97076.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
UT26S]
Length = 176
Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-LLV 64
M+ V L F LV AA+ D+ I N +L L A++ +E V
Sbjct: 1 MMKDLVLLAVSFVLVAAAVEDMARLRISN--IFPLLVIGLYAAWVAAAGWENDIWRNGTV 58
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
L +F + FA MGGGDVKL+++ A+WF W + ++ + GG+L++ ++ R
Sbjct: 59 FLGMFALGCGLFAMRAMGGGDVKLMSACALWFDWAGAVPWLVYVT-VGGGVLALVLMAGR 117
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ G + F K IPYG+AI++G +++
Sbjct: 118 RLVPQSWREGSSIA-LFDKKGPIPYGVAIALGTIMAL 153
>gi|134302013|ref|YP_001121982.1| prepilin peptidase family protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134049790|gb|ABO46861.1| prepilin peptidase family protein [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 263
Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 23/160 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
S + + D ++P+ +++ +L ++ + E ++G
Sbjct: 115 QSLALVTLASFFIPLFFIDAKHQILPDSLTLPLLWLGIILNYYHTFTTLEQSVWGAIIGY 174
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F + G GD KLL + WFG+ + I L
Sbjct: 175 LSLWLVFWIYKILTGKEGFGHGDFKLLAAVGAWFGYPMLLYTIFASCIFGIIIAIAINLV 234
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I +G AI +
Sbjct: 235 AKRTNV------------------IAFGPAIILATFFYLL 256
>gi|212213321|ref|YP_002304257.1| PilD [Coxiella burnetii CbuG_Q212]
gi|212011731|gb|ACJ19112.1| PilD [Coxiella burnetii CbuG_Q212]
Length = 285
Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 21/169 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIV 68
A+ + + L+ DL + + P+ +++ L L + F + + ++G +
Sbjct: 131 ALAGLLTWVLIVLFFIDLKTQLFPDAITLPTLWFGLSLSLFYMFVSPYQAIFGAILGYGL 190
Query: 69 FIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
I F+ MG GD K+++ WFG L V + + + +
Sbjct: 191 LWITAAFYQLIRKKEGMGRGDFKMVSMLGAWFGPGIVLNLLLLAVFLGLITSFMLLALKK 250
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+K IP+G I++ G IS + L+
Sbjct: 251 ----------------ISVKQPIPFGPFIAVAGWISLLSGPVLIHKLIS 283
>gi|254372956|ref|ZP_04988445.1| type IV pili leader peptidase and methylase [Francisella tularensis
subsp. novicida GA99-3549]
gi|254374407|ref|ZP_04989889.1| hypothetical protein FTDG_00575 [Francisella novicida GA99-3548]
gi|151570683|gb|EDN36337.1| type IV pili leader peptidase and methylase [Francisella novicida
GA99-3549]
gi|151572127|gb|EDN37781.1| hypothetical protein FTDG_00575 [Francisella novicida GA99-3548]
Length = 282
Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 23/161 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ S + + D ++P+ +++ +L ++ + E ++G
Sbjct: 123 LQSLALVTLASFFIPLFFIDAKHQILPDSLTLPLLWLGIILNYYHTFTTLEQSVWGAIIG 182
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F + G GD KLL + WFG+ + I L
Sbjct: 183 YLSLWLVFWIYKIFTGKEGFGYGDFKLLAAVGAWFGYPMLLYTIFASCIFGIIIAIAINL 242
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I +G AI +
Sbjct: 243 VAKRTNV------------------IAFGPAIILATFFYLL 265
>gi|187931850|ref|YP_001891835.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. mediasiatica FSC147]
gi|187712759|gb|ACD31056.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 263
Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 23/160 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
S + + D ++P+ +++ +L ++ + E ++G
Sbjct: 115 QSLALVTLASFFIPLFFIDAKHQILPDSLTLPLLWLGIILNYYHTFTTLEQSVWGAIIGY 174
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F + G GD KLL + WFG+ + I L
Sbjct: 175 LSLWLVFWIYKILTGKEGFGYGDFKLLAAVGAWFGYPMLLYTIFASCIFGIIIAIAINLV 234
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I +G AI +
Sbjct: 235 AKRTNV------------------IAFGPAIILATFFYLL 256
>gi|118497592|ref|YP_898642.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. novicida U112]
gi|208779393|ref|ZP_03246739.1| bacterial Peptidase A24 N- domain family [Francisella novicida FTG]
gi|118423498|gb|ABK89888.1| Type IV pili leader peptidase and methylase [Francisella novicida
U112]
gi|208745193|gb|EDZ91491.1| bacterial Peptidase A24 N- domain family [Francisella novicida FTG]
Length = 282
Score = 73.7 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 23/161 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ S + + D ++P+ +++ +L ++ + E ++G
Sbjct: 123 LQSLALVTLASFFIPLFFIDAKHQILPDSLTLPLLWLGIILNYYHTFTTLEQSVWGAIIG 182
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F + G GD KLL + WFG+ + I L
Sbjct: 183 YLSLWLVFWIYKILTGKEGFGYGDFKLLAAVGAWFGYPMLLYTIFASCIFGIIIAIAINL 242
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I +G AI +
Sbjct: 243 VAKRTNV------------------IAFGPAIILATFFYLL 265
>gi|219669543|ref|YP_002459978.1| peptidase A24A domain protein [Desulfitobacterium hafniense DCB-2]
gi|219539803|gb|ACL21542.1| peptidase A24A domain protein [Desulfitobacterium hafniense DCB-2]
Length = 253
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 59/172 (34%), Gaps = 19/172 (11%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL--TAFLLGMDYELIALHL 62
+ + L+ A+ D + +P+ ++ +LG ++ G
Sbjct: 98 SFLELGINFYFISVLLVLAVIDWDTYRLPDVFTLPLLGVGIVAGFLLPQGPSGWESLATA 157
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
L VF + + MG GD+KL+ + + G+ + ++ G I + +L+
Sbjct: 158 LGVGGVFWMITRLY-PEGMGLGDIKLIAGLSAFLGFPEALIAVFIASF-TGSIGGLIMLS 215
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + +IP+G + +GG I + L
Sbjct: 216 FEKRSF---------------REQIPFGPYLVLGGWIVFFWGQTILSFYYSL 252
>gi|323527414|ref|YP_004229567.1| Prepilin peptidase [Burkholderia sp. CCGE1001]
gi|323384416|gb|ADX56507.1| Prepilin peptidase [Burkholderia sp. CCGE1001]
Length = 317
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 22/169 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ + L+ ++ D+ + ++P+ +++ +L + ++ F L + G
Sbjct: 162 LAALAAFGLCAALLAMSIIDMDTHLLPDSMTLPLLWAGIVVNFNGVFASLHDAVLGAIFG 221
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V F + MG GD KLL + W GW I+
Sbjct: 222 YLVLWAVHWLFRLVRGIDGMGYGDFKLLAALGAWLGWAALPQ----------------IV 265
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG-LISYPDSYLFKV 169
V + + + +P+G ++ GG L + + L+
Sbjct: 266 LVAAVAGAVVGLAATWRGRMRFEEPLPFGPFLAAGGALTLFLGTPLYVA 314
>gi|882501|gb|AAA69139.1| ORF_f310 [Escherichia coli str. K-12 substr. MG1655]
gi|327413054|emb|CAX68083.1| putative leader peptidase [Salmonella enterica subsp. enterica]
Length = 310
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL +P+ + +L + L+ A+ + + +LVG I
Sbjct: 168 LAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 227
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 228 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 282
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 283 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 310
>gi|160871611|ref|ZP_02061743.1| bacterial Peptidase A24 N- domain family [Rickettsiella grylli]
gi|159120410|gb|EDP45748.1| bacterial Peptidase A24 N- domain family [Rickettsiella grylli]
Length = 272
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 21/166 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ + LI + L+ A D ++P+ + ++ LL + + + E L
Sbjct: 123 LQTISALILTWGLLILAFIDFEHQLLPDIIIFPLMWCGLLLSIKKVFVSPESAILGASGA 182
Query: 66 LIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + MG GD K WFG A + V+ L
Sbjct: 183 YLFLYLLAKGYQWIIKTEPMGEGDFKCFALLGSWFGIKTIPYILFIAAATGSLVGIVYYL 242
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
R +K IP+G +++ G ++
Sbjct: 243 YDRE----------------SLKEGIPFGPFLALSGWVTLLSQLYL 272
>gi|13474658|ref|NP_106227.1| type IV prepilin peptidase, cpaA [Mesorhizobium loti MAFF303099]
gi|14025413|dbj|BAB52013.1| type IV prepilin peptidase; CpaA [Mesorhizobium loti MAFF303099]
Length = 175
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 101/172 (58%), Gaps = 1/172 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + +F++ PFC++FAA+SD+ S I NRVS++++ F L A L GM++ H G
Sbjct: 4 MLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVVVFALVAPLTGMEWAAYGWHFAAG 63
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+V + F FA MGGGD KLL +TAVW G + +L ++GG+L++ IL R
Sbjct: 64 ALVLAVTFGLFAMGGMGGGDAKLLAATAVWMGLNIHLVEYLVVSTLIGGLLTIAILLYRK 123
Query: 126 ITNHIPIFGMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+ + F ++ IPYGIA+ +GGL++YPDS L AL L++
Sbjct: 124 SPLAVITGRNPFLRHFAEESVGIPYGIALGLGGLLTYPDSPLMVWALASLAS 175
>gi|307545300|ref|YP_003897779.1| prepilin peptidase [Halomonas elongata DSM 2581]
gi|307217324|emb|CBV42594.1| prepilin peptidase [Halomonas elongata DSM 2581]
Length = 283
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 21/175 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ +A L L+ A+ DL ++P+ +++ +L + LL + L ++G
Sbjct: 125 LEAAFILGACLTLLALAVIDLRLQILPDILTLPLLWAGLLYHLLFQPLGLPDAVLGAMLG 184
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F MG GD KLL + WFGW L A G + +
Sbjct: 185 YLALWGFHGLFQRLTGKRGMGHGDFKLLAALGAWFGWPY-LPLLLVLSAAGGALFGLV-- 241
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+P+G +++ G I + A
Sbjct: 242 -------------AQALDPRRRGQPMPFGPWLALAGWIMLLAGEPLMALYLQWIA 283
>gi|323495862|ref|ZP_08100930.1| Type II secretory pathway, prepilin signal peptidase PulO [Vibrio
sinaloensis DSM 21326]
gi|323319078|gb|EGA72021.1| Type II secretory pathway, prepilin signal peptidase PulO [Vibrio
sinaloensis DSM 21326]
Length = 200
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 22/162 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
S L F L+ A DL + ++P+ +++ ++ + + A + + + + + G
Sbjct: 41 SMALLFFTFTLIAATFIDLDTMLLPDSLTLPLMWTGITLALVGISPISLQNAVIGAIAGY 100
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F + MG GD KLL + W GW + F +++G +L + L
Sbjct: 101 LSLWSVYWLFKLITGKDGMGYGDFKLLAALGAWLGWQQ-LPMIILFSSLVGLVLGLIQLR 159
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ P+G +++ G IS
Sbjct: 160 LKRQGID---------------KAFPFGPYLAIAGWISMMWG 186
>gi|329847251|ref|ZP_08262279.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum
C19]
gi|328842314|gb|EGF91883.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum
C19]
Length = 172
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 76/163 (46%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ L P L++AA+SDL I NR+++++ G+F A LLG+ I +H V
Sbjct: 3 IPLIFALTYPAYLLWAAVSDLVRMTISNRLNLILAGAFFPAALLLGLSLGDIGIHTAVAA 62
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ FA MGGGD KL+ +TA+W G + G + ++ +
Sbjct: 63 GGLVLGMVLFALRFMGGGDAKLIAATALWLGLDGFIALLFYTALAGGALTLGIVIARKFF 122
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
P ++ + K IPYGIAI GGL++ P L+
Sbjct: 123 WALAPKLPKWLGQHLEAKTGIPYGIAICAGGLLAIPHGDLWAR 165
>gi|2920367|gb|AAC04561.1| PilD [Aeromonas salmonicida]
Length = 291
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 21/171 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ L+ + LV DL ++ +++++ +L LL L G + + G +
Sbjct: 135 TLAALLLTWVLVALTFIDLDKMLLXDQLNLXLLWXGLLFNLLGGYVPLGDAVIGXMAGYL 194
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
V + F MG GD KLL + W GW + L +++G I + ++ V
Sbjct: 195 VLWRLYWXFKLLTGKEGMGYGDFKLLAALGAWLGWQ-ALPIVLLLSSLVGAIFGIGLILV 253
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R IP+G +++ G I+ +
Sbjct: 254 RN---------------HHQSKPIPFGPYLAIAGWIALLWGDSITRWYLST 289
>gi|238764785|ref|ZP_04625727.1| Type IV prepilin peptidase [Yersinia kristensenii ATCC 33638]
gi|238696983|gb|EEP89758.1| Type IV prepilin peptidase [Yersinia kristensenii ATCC 33638]
Length = 276
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 22/164 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFII 71
L+ + L+ A DL ++P+ +++ +L L+ L ++G + +
Sbjct: 129 LLLVWALIALAFIDLSYYILPDCITLPLLWCGLVLNINDTFSSLSFSVLGAVMGYVFLWL 188
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG T LF ++ V
Sbjct: 189 PYWIFKLLKDIDSMGYGDFKLMAALGAWFGITAIPFLVLFSSSLGIISYVVI-------- 240
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
S + I +G IS+ G+ L
Sbjct: 241 ---------DRFSNEKRKFIAFGPYISLAGVGYIFWGDYITSLL 275
>gi|254419519|ref|ZP_05033243.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas
sp. BAL3]
gi|196185696|gb|EDX80672.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas
sp. BAL3]
Length = 173
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 2/171 (1%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
++ + P ++ L DL + IPN +S+V+L +F A L+G+ +A+H+ V
Sbjct: 2 DLLSLLCLAVFPILMIATGLHDLTTMRIPNWISLVLLATFFPAALLVGLSPVEVAIHVGV 61
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G I+ FA +GGGD K L + +W G T L+ + GG + +L +
Sbjct: 62 GFAALIVGMIMFALRWIGGGDAKALAAACLWMGLTGLAPLLLWTAIVGGGFCLLLLLVRQ 121
Query: 125 MITNHIPI--FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
P ++ + K IPYG+AI++G LI++P+ L L
Sbjct: 122 YYPMVAPAAFRIGWLARLMEPKGDIPYGVAIAIGALIAFPEGDLVVRFLTA 172
>gi|292493809|ref|YP_003529248.1| prepilin peptidase [Nitrosococcus halophilus Nc4]
gi|291582404|gb|ADE16861.1| Prepilin peptidase [Nitrosococcus halophilus Nc4]
Length = 289
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ L+ + L+ D ++P+ +++ L L + F + D + + G
Sbjct: 130 ETIAALLLSYALIALTFIDFDHQLLPDSITLPFLWFGLGLSLFEVFTDVRTSLIGAMAGY 189
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + + F MG GD KLL W + + +++G IL L
Sbjct: 190 LSLWLVYHLFRLLTKKEGMGYGDFKLLALLGAWL-GWTMLPAIILLSSLVGAILGTVWLA 248
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ S + +P+G ++ G ++ +
Sbjct: 249 L---------------SSQHRETPLPFGPYLAAAGWLALMWGQDINQFYLS 284
>gi|223984525|ref|ZP_03634657.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM
12042]
gi|223963511|gb|EEF67891.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM
12042]
Length = 247
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 19/172 (11%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
+ + + + L+ A+ DL + IP+R+S+ +L ++ L L
Sbjct: 94 YGATLTAVLHCLFLSILIVIAMIDLDTMEIPDRLSVFILILAVIALALEPSSIPSRILGA 153
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
L+ + F I N MGGGDVK++ + + G +F+ I ++
Sbjct: 154 LIISVPFWI---LSRLNAMGGGDVKIMCAAGFYLGAPLVLTAFVLSSFIGAIAALYLMIC 210
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ K++IP+G +++G +S A + L
Sbjct: 211 KKK----------------DRKSEIPFGPFLAIGLTLSVLWGNALIQAYLAL 246
>gi|56707803|ref|YP_169699.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. tularensis SCHU S4]
gi|89256308|ref|YP_513670.1| Type IV pili leader peptidase and methylase. [Francisella
tularensis subsp. holarctica LVS]
gi|110670274|ref|YP_666831.1| Type IV pili leader peptidase and methylase. [Francisella
tularensis subsp. tularensis FSC198]
gi|115314755|ref|YP_763478.1| prepilin peptidase [Francisella tularensis subsp. holarctica OSU18]
gi|167010177|ref|ZP_02275108.1| bacterial Peptidase A24 N- domain family protein [Francisella
tularensis subsp. holarctica FSC200]
gi|169656593|ref|YP_001428442.2| prepilin peptidase family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|224456872|ref|ZP_03665345.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254367641|ref|ZP_04983662.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. holarctica 257]
gi|254369287|ref|ZP_04985299.1| hypothetical protein FTAG_00247 [Francisella tularensis subsp.
holarctica FSC022]
gi|254370301|ref|ZP_04986306.1| prepilin peptidase [Francisella tularensis subsp. tularensis
FSC033]
gi|254874617|ref|ZP_05247327.1| type IV pili leader peptidase and methylase pilD [Francisella
tularensis subsp. tularensis MA00-2987]
gi|290953142|ref|ZP_06557763.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. holarctica URFT1]
gi|295313670|ref|ZP_06804254.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. holarctica URFT1]
gi|54112793|gb|AAV29030.1| NT02FT1017 [synthetic construct]
gi|56604295|emb|CAG45316.1| Type IV pili leader peptidase and methylase. [Francisella
tularensis subsp. tularensis SCHU S4]
gi|89144139|emb|CAJ79398.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. holarctica LVS]
gi|110320607|emb|CAL08699.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. tularensis FSC198]
gi|115129654|gb|ABI82841.1| prepilin peptidase [Francisella tularensis subsp. holarctica OSU18]
gi|134253452|gb|EBA52546.1| Type IV pili leader peptidase and methylase [Francisella tularensis
subsp. holarctica 257]
gi|151568544|gb|EDN34198.1| prepilin peptidase [Francisella tularensis subsp. tularensis
FSC033]
gi|157122237|gb|EDO66377.1| hypothetical protein FTAG_00247 [Francisella tularensis subsp.
holarctica FSC022]
gi|164551661|gb|ABU61486.2| Prepilin peptidase family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254840616|gb|EET19052.1| type IV pili leader peptidase and methylase pilD [Francisella
tularensis subsp. tularensis MA00-2987]
gi|282158977|gb|ADA78368.1| Prepilin peptidase family protein [Francisella tularensis subsp.
tularensis NE061598]
Length = 272
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 23/160 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
S + + D ++P+ +++ +L ++ + E ++G
Sbjct: 124 QSLALVTLASFFIPLFFIDAKHQILPDSLTLPLLWLGIILNYYHTFTTLEQSVWGAIIGY 183
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F + G GD KLL + WFG+ + I L
Sbjct: 184 LSLWLVFWIYKILTGKEGFGYGDFKLLAAVGAWFGYPMLLYTIFASCIFGIIIAIAINLV 243
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I +G AI +
Sbjct: 244 AKRTNV------------------IAFGPAIILATFFYLL 265
>gi|308274795|emb|CBX31394.1| hypothetical protein N47_E49060 [uncultured Desulfobacterium sp.]
Length = 260
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 23/174 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIALH 61
+ + L+ D+ +IP+ +S+ + +L A I
Sbjct: 102 EALAYFAFASALIVITFIDMDHQIIPDVISLPGIPIGILLASLVLPSINFKESIIGILAG 161
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V I MGGGD+KLL + GW + A +L
Sbjct: 162 GGSLFAVAWIYNLITKKEGMGGGDIKLLAMIGSFTGWQGVLFTIFIASATGTLAGIAVML 221
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI-SYPDSYLFKVALMGL 174
+ K +P+G +S+G ++ + + + L
Sbjct: 222 KTKKGV----------------KLAVPFGPFLSIGAILYIFFGTEIISWYFDIL 259
>gi|325108088|ref|YP_004269156.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
5305]
gi|324968356|gb|ADY59134.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
5305]
Length = 182
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 17/183 (9%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M ++ + + L+ AA D +PN ++ M+ S L+ ++ + +
Sbjct: 1 MDWQLVLENWHVKVVALILIVAAWIDGKELRVPNWITFPMILSGLVYCSVM-NGWIGLGE 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L + + +A MG GDVKL+ W G T ++ +F V + + + +
Sbjct: 60 GLWGMTVGLLTLLPLYAVGGMGAGDVKLMAGIGAWLGATVTWYAFCVSVIVGAVMAIIMV 119
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLISYPDS 164
L R H F + + + +K +PYGI I +G + + +
Sbjct: 120 LYRRSWEKHYNNFLVIIMEFITVKKPEKLYAIAAERKPNMLLLPYGIPICIGSIAYFFYT 179
Query: 165 YLF 167
+
Sbjct: 180 GMI 182
>gi|172059565|ref|YP_001807217.1| prepilin peptidase [Burkholderia ambifaria MC40-6]
gi|171992082|gb|ACB63001.1| Prepilin peptidase [Burkholderia ambifaria MC40-6]
Length = 303
Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 149 AALAAFGLCAALLAMSAIDIQTGYLPDSMTLPLLWAGLALNLGGTFTSLRSAVVGAMAGY 208
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD+KLL + W GW + + F A+ G ++ +
Sbjct: 209 LFLWSIYWLFKWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAVVGLVATW 267
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F +AL G
Sbjct: 268 RGR---------------MRFEEPIPFGPFLAAGGVATLFFGTPFYLALGG 303
>gi|325134913|gb|EGC57545.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis M13399]
Length = 286
Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
LI L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LILTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWL 193
Query: 72 CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLIKGEIGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|163851901|ref|YP_001639944.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1]
gi|163663506|gb|ABY30873.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1]
Length = 169
Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 75/156 (48%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ PF + +AA SDL + I NRV+ ++ FLL A + GMD+ ++ HL G +
Sbjct: 5 LLLCVVFPFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRHLAAGSLT 64
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+I F FA +GGGD KL STA+W G + + + + +
Sbjct: 65 LVITFALFARGWIGGGDAKLAASTALWIGLANLPEYLILASILGAPLTLSIVSARKYPLP 124
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + F K +PYGIA++ L+ P+S
Sbjct: 125 KLALKFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 160
>gi|114705459|ref|ZP_01438367.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506]
gi|114540244|gb|EAU43364.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506]
Length = 169
Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + + + P C++FAA+SD+ + IPNR+ +++ +F + A L M IA+HL G
Sbjct: 1 MSYLFLTTVFPLCMIFAAVSDIMTMTIPNRLCLLLALAFPVAALLSNMSTSDIAIHLGFG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L F++ F FAF ++GGGD KLL +TA W G + L + G L +
Sbjct: 61 LAAFLLGFAMFAFGLVGGGDAKLLAATAFWIGPAGALPYLLVATGLGG--LMAIGIIYAR 118
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+F + +PYG+A+ + GL SY DS A+
Sbjct: 119 NMAVPITGYVFADRLLSQNTGVPYGVALGIAGLYSYADSVYLTAAI 164
>gi|134095953|ref|YP_001101028.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Herminiimonas arsenicoxydans]
gi|133739856|emb|CAL62907.1| type 4 prepilin-like proteins leader peptide processing enzyme
(Protein secretion protein XCPA)[Includes: Leader
peptidase (Prepilin peptidase); N-methyltransferase ]
[Herminiimonas arsenicoxydans]
Length = 286
Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L+ D + ++P+ +++ +L LL + E + G +
Sbjct: 135 LVFAYLLIAMTFIDADTQLLPDDLTLSLLWLGLLLNLNATFVPLEEAVIGATAGYMSLWS 194
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W GW + +++G ++ + ++ +
Sbjct: 195 IYWLFKLATGKEGMGYGDFKLLAALGAWLGWK-MLPVIILLSSLVGAVVGIALIMLAKRG 253
Query: 128 NHIPIFGMFV 137
IPI
Sbjct: 254 RDIPIPFGPY 263
>gi|85986488|emb|CAF22036.1| type IV prepilin peptidase PilD [Legionella longbeachae]
Length = 286
Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
LI + L+ DL ++P+ +++ +L LL L L +
Sbjct: 128 THLLFVLIAIWILICLIFIDLDHQILPDCLTLSLLWLGLLANTANLFTPLPQAVLSASIA 187
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
I + F MG GD KL + W GW L ++ G I+ + L
Sbjct: 188 YIGMWLFIKLFYLFTGKIGMGNGDFKLFAAFGAWLGWIY-LPLILLLSSVSGTIIGLLYL 246
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + IP+G + + GLI
Sbjct: 247 YSKGK---------------TKETAIPFGPFLCISGLICLFWGKYIVR 279
>gi|189425219|ref|YP_001952396.1| peptidase A24A domain protein [Geobacter lovleyi SZ]
gi|189421478|gb|ACD95876.1| peptidase A24A domain protein [Geobacter lovleyi SZ]
Length = 258
Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 21/163 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-----LIALHLLVG 65
++ + L+ D +IP+ +S+ +G L +F L I +
Sbjct: 104 IYSLLVAALIVVTFIDFDHQIIPDEISLPGVGLGFLASFFLPEPGWLSSLLGIVVGWGSL 163
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+VF MGGGD KLL + G + +F +++G + + I+ ++
Sbjct: 164 ALVFYSYLWLTGREGMGGGDAKLLAMLGAFLGLK-AVPFIIFTSSLVGTVAGLSIMALQR 222
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
H+ IP+G +++G ++
Sbjct: 223 KGRHL---------------AIPFGPYLALGAVLYIFYGPQLI 250
>gi|15676247|ref|NP_273381.1| type IV prepilin peptidase [Neisseria meningitidis MC58]
gi|304386511|ref|ZP_07368799.1| type IV prepilin leader peptidase [Neisseria meningitidis ATCC
13091]
gi|7225552|gb|AAF40775.1| type IV prepilin peptidase [Neisseria meningitidis MC58]
gi|254670163|emb|CBA05219.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Neisseria meningitidis alpha153]
gi|304339340|gb|EFM05412.1| type IV prepilin leader peptidase [Neisseria meningitidis ATCC
13091]
gi|316984334|gb|EFV63308.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis H44/76]
gi|325140981|gb|EGC63487.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis CU385]
gi|325199526|gb|ADY94981.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis H44/76]
Length = 286
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LVLTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSLWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLLTGKTGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|238783689|ref|ZP_04627709.1| Type IV prepilin peptidase [Yersinia bercovieri ATCC 43970]
gi|238715402|gb|EEQ07394.1| Type IV prepilin peptidase [Yersinia bercovieri ATCC 43970]
Length = 269
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 22/155 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFII 71
L + LV + D ++P+ ++ +L + LL G+ + + G ++ +
Sbjct: 129 LFLVWALVALSFIDFECYLLPDCITFPLLWAGLLFNINNGLSSLSFAVIGAVTGYLILWM 188
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KL+++ WFG + + L + + +
Sbjct: 189 PYWLLKFFKGVEGMGHGDFKLMSALGAWFGLSAIPVLVLLSSCLGIMAYIILHKISKK-- 246
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I +G I++ G+I
Sbjct: 247 ---------------REKYIAFGPHIALAGVIYLF 266
>gi|325203445|gb|ADY98898.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis M01-240355]
Length = 286
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
LI L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LILTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLLTRKTGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|255102714|ref|ZP_05331691.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-63q42]
Length = 260
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 57/179 (31%), Gaps = 18/179 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIA 59
M + +L+ L+ D+ +IP+++ + ++ L + +
Sbjct: 93 MLYGISTSTIYYLVLVSLLIIITFIDIDHFIIPDKILVFGAIFSMIFNLLFKEIPVKDSI 152
Query: 60 LHLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L + + I MGGGD+KL ++ G L+ L V +
Sbjct: 153 LGVFICGGSVWIIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYVGAVY 212
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
I+ R+ IPYG IS+G LI+ +
Sbjct: 213 GICVIIISRIKGKEYNSV-------------IPYGPFISIGALITILSGKQLLELYFSM 258
>gi|295690800|ref|YP_003594493.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756]
gi|295432703|gb|ADG11875.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756]
Length = 170
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 1/166 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ ++ ++ P + AL DL S IPN VS+ ++ +F+ A + G+ I + L VGL
Sbjct: 4 LQISLLMVFPALAIVGALKDLTSYTIPNWVSLALIAAFVPAALISGVSLPQIGVCLAVGL 63
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI-LSVFILTVRM 125
++ FA +GGGD KLL + A+W GW L+ G + ++ L
Sbjct: 64 GALVLGMGMFAAGWIGGGDGKLLAACALWMGWPAVLPFLLYTGLAGGALTFAILALRSGW 123
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ + +V + +PYG+AI+ G LI++P + L + L
Sbjct: 124 VAPMVAGGPAWVRRLGQSGGDLPYGVAIAAGALIAFPKALLAQGVL 169
>gi|270156626|ref|ZP_06185283.1| type IV prepilin peptidase PilD [Legionella longbeachae D-4968]
gi|289164921|ref|YP_003455059.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Legionella longbeachae NSW150]
gi|269988651|gb|EEZ94905.1| type IV prepilin peptidase PilD [Legionella longbeachae D-4968]
gi|288858094|emb|CBJ11956.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[Legionella longbeachae NSW150]
Length = 286
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
LI + L+ DL ++P+ +++ +L LL L L +
Sbjct: 128 THLLFVLIAIWILICLIFIDLDHQILPDCLTLSLLWLGLLANTANLFTPLPQAVLSASIA 187
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
I + F MG GD KL + W GW L ++ G I+ + L
Sbjct: 188 YIGMWLFIKLFYLFTGKIGMGNGDFKLFAAFGAWLGWIY-LPLILLLSSVSGTIIGLLYL 246
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + IP+G + + GLI
Sbjct: 247 YSKGK---------------TKETAIPFGPFLCISGLICLFWGKYIVR 279
>gi|332526518|ref|ZP_08402630.1| prepilin peptidase [Rubrivivax benzoatilyticus JA2]
gi|332110786|gb|EGJ10963.1| prepilin peptidase [Rubrivivax benzoatilyticus JA2]
Length = 316
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 23/158 (14%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLLVGLIVFIICFCFFAF--- 78
D + ++P+ +++ +L + L+ A L + VG + + F
Sbjct: 175 IDWDTTVLPDGMTLPLLWAGLVAAALGWLPGQTLADAIAGAAVGYLSLWSVYWLFKLATG 234
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GD KLL + W GW L I + GM
Sbjct: 235 KEGMGYGDFKLLAALGAWLGWQAIVPIVLMASVIGAVVGL----------------GMKA 278
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
S +P+G ++ GGL+ ++ +G +
Sbjct: 279 TGSLREGRFVPFGPFLAGGGLVVLLAGRETVLSWIGWA 316
>gi|167648154|ref|YP_001685817.1| peptidase A24A prepilin type IV [Caulobacter sp. K31]
gi|167350584|gb|ABZ73319.1| peptidase A24A prepilin type IV [Caulobacter sp. K31]
Length = 170
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
A+ L+ P +V AAL D+ S IPN +S+ ++ +F+ A + G I L L GL
Sbjct: 5 QFALLLVFPALVVIAALKDVTSFTIPNWISLALIAAFVPAALVSGASLSSIGLCLATGLG 64
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI-LSVFILTVRMI 126
++ FA +GGGD KL ++A+W GW + L G + L + L
Sbjct: 65 ALVVGMGMFAAGWIGGGDAKLFAASALWLGWPATLPFMLTTGLAGGALTLGILSLRSGWF 124
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ +V K IPYG+AI++G L+++P L
Sbjct: 125 EPILAGSPPWVRKLGANGGDIPYGVAIAVGALVTFPQGAL 164
>gi|261401636|ref|ZP_05987761.1| type IV prepilin leader peptidase [Neisseria lactamica ATCC 23970]
gi|269208275|gb|EEZ74730.1| type IV prepilin leader peptidase [Neisseria lactamica ATCC 23970]
gi|309378661|emb|CBX22732.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 286
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LVLTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSLWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLLTGKTGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|332160543|ref|YP_004297120.1| prepilin peptidase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325664773|gb|ADZ41417.1| prepilin peptidase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330863531|emb|CBX73647.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Yersinia enterocolitica W22703]
Length = 277
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 22/164 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ + ++ A D+ ++P+ +++ +L L+ L L + G +
Sbjct: 130 LLFLWAIIALAFIDIEHYILPDCITLPLLWCGLVININNSFSPLSLSVLGAVTGYVFLWF 189
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG L + +++
Sbjct: 190 PYWIFKVFKNIDGMGYGDFKLMAALGAWFGVIAIPFLVLLSSCFGIIAYIIINKSLKKKL 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
++ +G I++ G++
Sbjct: 250 KYLA-----------------FGPCIALAGVVYLFWGKYINFLF 276
>gi|302381758|ref|YP_003817581.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC
15264]
gi|302192386|gb|ADK99957.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC
15264]
Length = 170
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 75/155 (48%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
++ AALSDL + IPN +S +++ F AF +G+ + L++ V + ++ FA
Sbjct: 16 VIVAALSDLTTMKIPNWISGLLIVGFFPAAFAVGLSPAEVGLNVAVAVGALLVGMGLFAG 75
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
I+GGGD K++ +T +W G+ + + L+ G + I + + +V
Sbjct: 76 RIIGGGDAKVMAATCLWLGFGGAGMFLLYTGLFGGLLCLALIAARKSVVLPAHATPGWVA 135
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +PYG+AI G L ++P S L G
Sbjct: 136 TLMEPRGDLPYGVAICAGALAAFPSSPLLLTYAAG 170
>gi|254293212|ref|YP_003059235.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814]
gi|254041743|gb|ACT58538.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814]
Length = 169
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ I LV+AA D+F IPN VSI++ FL TA+ + E H LVG
Sbjct: 1 MIIPISAGIFAALLVYAACHDVFDRTIPNWVSILIAILFLPTAYFAELSLEQFGWHALVG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
I II F I GGGD KL+ + ++W G + +FL AI GG++++ ++ +R
Sbjct: 61 AIALIIGIALFYLRIWGGGDAKLVAAVSLWMGLQ-AEPTFLAAFAIAGGLIALPLIIIRR 119
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+ L K+PYG+AI+ G + P S++ A+ + A
Sbjct: 120 MKFEPKNDR---LAKMLDTKKVPYGVAIAAGAFWAAPQSFVLMQAINSIGA 167
>gi|271501345|ref|YP_003334370.1| Prepilin peptidase [Dickeya dadantii Ech586]
gi|270344900|gb|ACZ77665.1| Prepilin peptidase [Dickeya dadantii Ech586]
Length = 283
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ L+ L+ A+ D + ++P+ +++ +L LL + E + + G
Sbjct: 130 MALLGALLCISMLLALAVIDARTQLLPDVMTLPLLWCGLLFNLADTFVPLEQAVIGAMAG 189
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + F +G GD KLL + W GW + + + ++ G + ++
Sbjct: 190 YLSLWLIYWGFRLLSGREALGYGDFKLLAALGAWLGWQ-ALPNLVLIASLTGLVATLLWR 248
Query: 122 TVRMITNHIPIFGMFV 137
+R I P+
Sbjct: 249 RIRRINMQQPLAFGPW 264
>gi|161870738|ref|YP_001599911.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Neisseria meningitidis 053442]
gi|161596291|gb|ABX73951.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Neisseria meningitidis 053442]
gi|325143046|gb|EGC65397.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis 961-5945]
gi|325145127|gb|EGC67409.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis M01-240013]
gi|325198978|gb|ADY94434.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis G2136]
Length = 286
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
LI L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LILTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWL 193
Query: 72 CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLIKGEIGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|255308535|ref|ZP_05352706.1| putative type IV prepilin leader peptidase [Clostridium difficile
ATCC 43255]
Length = 260
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 57/179 (31%), Gaps = 18/179 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIA 59
M + +L+ L+ D+ +IP+++ + ++ L + +
Sbjct: 93 MLYGISTSTIYYLVLVSLLIIITFIDIDHFIIPDKILVFGAIFSMIFNLLFKEIPVKDSI 152
Query: 60 LHLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L + + I MGGGD+KL ++ G L+ L V +
Sbjct: 153 LGVFICGGSVWIIVILIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYVGAVY 212
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
I+ R+ IPYG IS+G LI+ +
Sbjct: 213 GICVIIISRIKGKEYNSV-------------IPYGPFISIGALITILCGKQLLELYFSM 258
>gi|261820722|ref|YP_003258828.1| prepilin peptidase [Pectobacterium wasabiae WPP163]
gi|261604735|gb|ACX87221.1| Prepilin peptidase [Pectobacterium wasabiae WPP163]
Length = 282
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFCFFA---- 77
+ D+ + ++P+ +++ +L LL + + + G + + + F
Sbjct: 148 TVIDIKTLLLPDVLTLSLLWGGLLFNLSETFVPLGDAVVGAMAGYLSLWLLYWVFKYATG 207
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GD KLL + W GW + + + A+ G ++++ +R
Sbjct: 208 KEALGYGDFKLLAALGAWLGWR-ALPNLVLVAALSGLVVTLVWRGLRKE----------- 255
Query: 138 PKSFLMKNKIPYGIAISMGGLIS 160
+ +G +++GG+ S
Sbjct: 256 ----ETNKPLAFGPWLAIGGVFS 274
>gi|186683080|ref|YP_001866276.1| peptidase A24A domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186465532|gb|ACC81333.1| peptidase A24A domain protein PilD [Nostoc punctiforme PCC 73102]
Length = 296
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 22/190 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-------------- 52
+ + + L+ +L DL + +PN ++ L + +L ++G
Sbjct: 102 ILTIGYWAFCSWLLALSLIDLDTMTLPNPLTQSGLVAGILFQMVVGYLSEGSSVALVNHL 161
Query: 53 -MDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ L L + + ++ F MG GD KL W GW L+ A+
Sbjct: 162 MIAILGAVLGLWLFDAIALLGSIAFGKTAMGAGDAKLAAMMGAWLGWKYLLLATFIACAL 221
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPK-------SFLMKNKIPYGIAISMGGLISYPDS 164
I S I+ R++ + + + + K+P+G +++G LI+
Sbjct: 222 GALIGSAIIMHKRILLGRSKLRTASGREATNEQTSTHRLGQKMPFGPFLALGSLITLFSG 281
Query: 165 YLFKVALMGL 174
+ L
Sbjct: 282 EAILSIYLRL 291
>gi|330815459|ref|YP_004359164.1| Type IV pilus prepilin peptidase PilD [Burkholderia gladioli BSR3]
gi|327367852|gb|AEA59208.1| Type IV pilus prepilin peptidase PilD [Burkholderia gladioli BSR3]
Length = 296
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 21/162 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ +L D+ + +P+ +++ +L + LL D + + G
Sbjct: 142 AALAAFGLCAMLLAMSLIDIKTGYLPDSMTLPLLWAGLLVNLWGNFVDLREAVIGAIAGY 201
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F +G GD+KLL + W GW + L A+ G + + +
Sbjct: 202 LFLWCVFWLFKLLRGIEGIGYGDLKLLAALGAWLGW-IALPQVLLIAALSGAAVGLLAMW 260
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + +P+G +++GG+++
Sbjct: 261 RGRMRY---------------EEPLPFGPFLALGGILTLLHG 287
>gi|161525989|ref|YP_001581001.1| prepilin peptidase [Burkholderia multivorans ATCC 17616]
gi|189349294|ref|YP_001944922.1| leader peptidase [Burkholderia multivorans ATCC 17616]
gi|160343418|gb|ABX16504.1| Prepilin peptidase [Burkholderia multivorans ATCC 17616]
gi|189333316|dbj|BAG42386.1| leader peptidase [Burkholderia multivorans ATCC 17616]
Length = 303
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 149 TALAAFGLCAALLAMSAIDMRTGYLPDSMTLPLLWAGLALNLGGTFASLRSAVIGAMAGY 208
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD+KLL + W GWT + + F A+ G ++ +
Sbjct: 209 LFLWSIYWLFKWLRGIEGIGFGDLKLLAALGAWLGWT-ALPQVVLFAAVTGALVGLVATW 267
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG + F AL G
Sbjct: 268 RGR---------------MRFEEPIPFGPFLAAGGAATLFFGTPFYSALGG 303
>gi|33598467|ref|NP_886110.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Bordetella parapertussis 12822]
gi|33574596|emb|CAE39245.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Bordetella parapertussis]
Length = 330
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 17/161 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + L+ A DL +++P+ V++ ++ + LL + L L + G +
Sbjct: 173 ALAAMGLTGALLALAWIDLEHSLLPDAVTLPLIWAGLLVNLDGALAPLPLAVLGAVAGYL 232
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F FF + MG GD KL+ + W G + L ++ G ++ V +
Sbjct: 233 FLWVIFHFFRLLTGRDGMGHGDFKLMAALGAWLGL-GALPWLLLGASLAGVLVGVLV--- 288
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + + +P+G +++GG++ +
Sbjct: 289 --------GWSLRLAGRVGRGQPLPFGPYLALGGILMLLAA 321
>gi|240139024|ref|YP_002963499.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1]
gi|240008996|gb|ACS40222.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1]
Length = 172
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 76/163 (46%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
S + + + PF + +AA SDL + I NRV+ ++ FLL A + GMD+ ++ H
Sbjct: 1 MLSMAAYLLLCFVFPFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRH 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L G + +I F FA +GGGD KL STA+W G + + + +
Sbjct: 61 LAAGSLTLVITFALFARGWIGGGDAKLAASTALWIGLANLPEYLILASILGAPLTLSIVS 120
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + + F K +PYGIA++ L+ P+S
Sbjct: 121 ARKYPLPKLALKFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163
>gi|299132285|ref|ZP_07025480.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2]
gi|298592422|gb|EFI52622.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2]
Length = 174
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/165 (31%), Positives = 81/165 (49%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ A + P + FAA SDL + I NRVS++++ F + A + GM +E I H L G
Sbjct: 2 LLDLARLFLFPALMAFAAASDLLTMTISNRVSLLLIAGFFVLAIVTGMGWEAIGWHALAG 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L V II F FAF +GGGD K+ +TA+WFG+ L + G + +
Sbjct: 62 LSVLIIAFACFAFGWIGGGDAKVAAATALWFGFGYLLDYLLLASVLGGVLTLAILQFRNW 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ ++ + IPYGIA++ L+ YPD+ +
Sbjct: 122 TLPTWLLGQDWLVRLHGKDTGIPYGIALAAAALLIYPDTDWTRAV 166
>gi|71906277|ref|YP_283864.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Dechloromonas aromatica RCB]
gi|71845898|gb|AAZ45394.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Dechloromonas aromatica RCB]
Length = 284
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 21/157 (13%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF----N 79
DL + ++P+ +++ +L LL D + + G + F F
Sbjct: 144 IDLDTQLLPDSITLPLLWLGLLFNLWNTYTDLPSAVIGAVAGYLTLWSVFWLFKLATGKE 203
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MG GD KLL + W GW L + + I+ R
Sbjct: 204 GMGYGDFKLLAALGAWLGWQMLPAIILLSSVVGAVVGVTLIVVAR--------------- 248
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
IP+G ++ G I+ +G+ A
Sbjct: 249 -HGRNIPIPFGPYLAAAGGIALFWGAQITNTYLGMIA 284
>gi|167586039|ref|ZP_02378427.1| Prepilin peptidase [Burkholderia ubonensis Bu]
Length = 289
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 134 MAALAAFGLCAALLAMSAIDIQTGYLPDSMTLPLLWAGLALNLGGTFASLRAAVIGAMAG 193
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F +G GD+KLL + W GW + + F A+ G ++ +
Sbjct: 194 YLFLWSIYWLFRWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAVVGLVAT 252
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG + F AL G
Sbjct: 253 WRGR---------------MRFEEPIPFGPFLAAGGAATLFFGTPFYSALGG 289
>gi|254977129|ref|ZP_05273601.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-66c26]
gi|255094458|ref|ZP_05323936.1| putative type IV prepilin leader peptidase [Clostridium difficile
CIP 107932]
gi|255316209|ref|ZP_05357792.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-76w55]
gi|255518871|ref|ZP_05386547.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-97b34]
gi|255652050|ref|ZP_05398952.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-37x79]
gi|260685024|ref|YP_003216309.1| putative type IV prepilin leader peptidase [Clostridium difficile
CD196]
gi|260688682|ref|YP_003219816.1| putative type IV prepilin leader peptidase [Clostridium difficile
R20291]
gi|306521787|ref|ZP_07408134.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-32g58]
gi|260211187|emb|CBA66662.1| putative type IV prepilin leader peptidase [Clostridium difficile
CD196]
gi|260214699|emb|CBE07352.1| putative type IV prepilin leader peptidase [Clostridium difficile
R20291]
Length = 260
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 18/179 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIA 59
M + +L+ L+ D+ +IP+++ I ++ L + +
Sbjct: 93 MLYGISTSTIYYLVLVSLLIIITFIDIDHFIIPDKILIFGAIFSMIFNLLFKEIPVKDSI 152
Query: 60 LHLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L + + I MGGGD+KL ++ G L+ L V +
Sbjct: 153 LGVFICGGSVWIIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYVGAVY 212
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
I+ R+ IPYG IS+G LI+ +
Sbjct: 213 GICVIIISRIKGKEYNSV-------------IPYGPFISIGALITILCGKQLLELYFSM 258
>gi|42522434|ref|NP_967814.1| leader peptidase (prepilin peptidase) [Bdellovibrio bacteriovorus
HD100]
gi|39574966|emb|CAE78807.1| leader peptidase (prepilin peptidase) [Bdellovibrio bacteriovorus
HD100]
Length = 259
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 21/168 (12%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFI 70
+LI F LV DL ++P+ ++ + L+ A L ++ +L+G
Sbjct: 103 YLIFIFGLVVCTFIDLDHMILPDEFTLSGIVIGLVGAALNPQREFLDALFGVLMGGGFLW 162
Query: 71 ----ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F MGGGD+KLL GW + + AI+G ++ + +
Sbjct: 163 GMAYVYYMFTKNEGMGGGDIKLLAWIGAIVGWK-AIPFVIMTSAIVGSVIGLIAARKQKA 221
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K IP+G +++G ++ + +GL
Sbjct: 222 GL---------------KTVIPFGPYLALGAVVYLFGGEAIALWYLGL 254
>gi|260897206|ref|ZP_05905702.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
parahaemolyticus Peru-466]
gi|308088437|gb|EFO38132.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
parahaemolyticus Peru-466]
Length = 192
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
F+ + F L+ A DL + ++P+++++ + + + A + + + + + G
Sbjct: 32 FTVALIFFTFFLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 91
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W GW S + +++G I + L
Sbjct: 92 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQ-SLPMIILLSSVVGVIFGLVQL 150
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ ++ P+G +++ G +S
Sbjct: 151 RLQKQG---------------IERAFPFGPYLAIAGWVSLIWGDQI 181
>gi|258516876|ref|YP_003193098.1| peptidase A24A domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257780581|gb|ACV64475.1| peptidase A24A domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 250
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 16/165 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L+ A++ DL+ +IPNR+ + L + L L + L V F+
Sbjct: 102 AMWLFISLLIVASVIDLYHQIIPNRIILAGLIAGLPLTALQSWEVLKSGLMAFVVGGGFL 161
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ + MGGGD+KL ++ G ++F G + V +L+ R
Sbjct: 162 LIVAIVSCGGMGGGDIKLGAMIGLYLGLNNLIVAFFLAFLTGGVVGLVLMLSGRK----- 216
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
K+ +P+G +S+G L++ + G
Sbjct: 217 -----------GRKDPVPFGPFLSLGALLAVFWGEKLILWYWGFM 250
>gi|206577659|ref|YP_002236278.1| peptidase, A24 (type IV prepilin peptidase) family [Klebsiella
pneumoniae 342]
gi|288933264|ref|YP_003437323.1| peptidase A24A prepilin type IV [Klebsiella variicola At-22]
gi|290512067|ref|ZP_06551435.1| leader peptidase HopD [Klebsiella sp. 1_1_55]
gi|206566717|gb|ACI08493.1| peptidase, A24 (type IV prepilin peptidase) family [Klebsiella
pneumoniae 342]
gi|288887993|gb|ADC56311.1| peptidase A24A prepilin type IV [Klebsiella variicola At-22]
gi|289775857|gb|EFD83857.1| leader peptidase HopD [Klebsiella sp. 1_1_55]
Length = 161
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLV 64
+ L + DL ++P+R + +L S LL L
Sbjct: 2 LAALPFLLCYSGLTLALCQQDLRYGLLPDRFTCPLLWSGLLFYLCLAPHQLNEAVWGALA 61
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + F + + +G GD+K L + W GW L + G +
Sbjct: 62 GYLSFAALYWLYRRVRGHEGLGYGDIKYLAALGAWHGWRMLPQLVLVASLLAGMTWVILG 121
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L+ R N + + N +P+G ++ G
Sbjct: 122 LSARCGGN----------RKWEKNNPLPFGPFLAAAGFW 150
>gi|16127177|ref|NP_421741.1| pilus assembly protein CpaA [Caulobacter crescentus CB15]
gi|221235978|ref|YP_002518415.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus
NA1000]
gi|7208423|gb|AAF40190.1|AF229646_2 CpaA [Caulobacter crescentus CB15]
gi|13424575|gb|AAK24909.1| pilus assembly protein CpaA [Caulobacter crescentus CB15]
gi|220965151|gb|ACL96507.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus
NA1000]
Length = 170
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + LI P + AL DL S IPN +S+ ++ +F+ A + G I L L VGL
Sbjct: 4 LQIPLLLIFPALAIVGALKDLTSYTIPNWISLALIAAFVPAALVSGAPLSQIGLCLAVGL 63
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI-LSVFILTVRM 125
++ FA +GGGD KL A+W GW + L+ G + ++ L
Sbjct: 64 GALVLGMGMFAAGWIGGGDGKLFAVCALWLGWPAALTFMLYTGLAGGVLTFAILGLRSGW 123
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ + ++ K +PYG+AI++G L ++P L
Sbjct: 124 LAPAVAGGPAWLRKLGTTGGDLPYGVAIAVGALAAFPQGAL 164
>gi|34499281|ref|NP_903496.1| type IV prepilin-like proteins leader peptide processing enzyme
[Chromobacterium violaceum ATCC 12472]
gi|34105132|gb|AAQ61488.1| probable type IV prepilin-like proteins leader peptide processing
enzyme [Chromobacterium violaceum ATCC 12472]
Length = 305
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 21/158 (13%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF---- 78
D + ++P+ +++ +L LL + G+ L + G + + +
Sbjct: 163 FIDFDTKLLPDGLTLPLLWGGLLFNLMTGLVPLSAAVLGAVYGYMTLWLVSHAYKLVAGR 222
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+ MGGGD KLL + W GWT L L + + R
Sbjct: 223 HGMGGGDFKLLAALGAWLGWTMLPLIILLSSLVGAVCGIAMMSASR-------------- 268
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+IP+G +S G I+ + +
Sbjct: 269 --VGRGQEIPFGPYLSAAGWIALVWGPQIMNGYLTWLS 304
>gi|261418359|ref|YP_003252041.1| peptidase A24A domain protein [Geobacillus sp. Y412MC61]
gi|319767682|ref|YP_004133183.1| prepilin peptidase [Geobacillus sp. Y412MC52]
gi|261374816|gb|ACX77559.1| peptidase A24A domain protein [Geobacillus sp. Y412MC61]
gi|317112548|gb|ADU95040.1| Prepilin peptidase [Geobacillus sp. Y412MC52]
Length = 251
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 18/167 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
V +SDL +IP+RV +V G FL+ ++ + + L VG
Sbjct: 100 LVVAWTLISLFAIIVVSDLRYMLIPDRVLLVFAGLFLVERLVIPFLPWADMLLGAAVGFS 159
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + MGGGDVKL GW L+F I V + R+
Sbjct: 160 LLWLIAVLSK-GGMGGGDVKLFAVLGFVLGWKMVLLAFFLATLYGTVIGLVGMALGRVR- 217
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+ AI++G L ++ A + L
Sbjct: 218 ---------------RGKPMPFAPAIALGALTAFFFGEAIVRAYISL 249
>gi|126701128|ref|YP_001090025.1| putative type IV prepilin leader peptidase [Clostridium difficile
630]
gi|115252565|emb|CAJ70408.1| putative type IV prepilin peptidase, A24A family [Clostridium
difficile]
Length = 260
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 57/179 (31%), Gaps = 18/179 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIA 59
M + +L+ L+ D+ +IP+++ + ++ L + +
Sbjct: 93 MLYGISTSTIYYLVLVSLLIIITFIDIDHFIIPDKILVFGAIFSMIFNLLFKEIPVKDSI 152
Query: 60 LHLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L + + I MGGGD+KL ++ G L+ L V +
Sbjct: 153 LGVFICGGSVWIIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYVGAVY 212
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
I+ R+ IPYG IS+G LI+ +
Sbjct: 213 GICVIIISRIKGKEYNSV-------------IPYGPFISIGALITILCGKQLLELYFSM 258
>gi|296121062|ref|YP_003628840.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
gi|296013402|gb|ADG66641.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
Length = 183
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 19/182 (10%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
+S ++ L+ AA D +PN ++ M+ S L+ F++G + + L
Sbjct: 4 QSFLMQHWDVKFVSLVLILAAWIDGKELRVPNWITFPMVLSGLIYGFVMG-GWAGLGDSL 62
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ ++ +A MG GDVKL+ W G ++ +F+ ++G I+++ +
Sbjct: 63 IGMVVGLACLLPLYAVGGMGAGDVKLMAGMGAWLGAAITWQAFMV-SVVVGAIMAIIMAC 121
Query: 123 VRMITNHIPIFGMFVPKSFLMKNK-----------------IPYGIAISMGGLISYPDSY 165
R + M + + +PYGI I +G + + +
Sbjct: 122 YRKDLHKHVGQAMLIWTEWTTIRDPRKLSEIAAERKPRMLLLPYGIPICIGSIAYFVYAG 181
Query: 166 LF 167
L
Sbjct: 182 LI 183
>gi|270487398|ref|ZP_06204472.1| type IV prepilin leader peptidase domain protein [Yersinia pestis
KIM D27]
gi|270335902|gb|EFA46679.1| type IV prepilin leader peptidase domain protein [Yersinia pestis
KIM D27]
Length = 234
Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L A D + ++P+ ++I +L LL L + G + +
Sbjct: 121 LVLIWSLTALAFIDFDTYLLPDCMTIPLLWLGLLINIDTVFAPLTSAVLGAVSGYLFLWL 180
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ F + MG GD KL+ + WFG + LF ++FI
Sbjct: 181 SYWLFKIVRGVDGMGYGDFKLMAALGAWFGVSAVPFLILFSSFFGLVAYAIFI 233
>gi|254455857|ref|ZP_05069286.1| type II Secretion PilD [Candidatus Pelagibacter sp. HTCC7211]
gi|207082859|gb|EDZ60285.1| type II Secretion PilD [Candidatus Pelagibacter sp. HTCC7211]
Length = 245
Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 25/155 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-----YELIALH 61
+ + +F+I + DL +IPN ++ ++ + +F ++ Y +
Sbjct: 87 ITTLLFIILALTFIIIFFIDLKHYIIPNGLTFPLMFIGFIKSFDPNLNELFPNYINSLIG 146
Query: 62 LLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+ G + + MG GD KLL++ WFGW + +F +I+ +
Sbjct: 147 GVFGYGIIWAIIFIYKVLRNKEGMGLGDAKLLSAIGFWFGW-IAIPFVIFSSSIVALFVV 205
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
+ L + ++IP+G
Sbjct: 206 LPSLLNKSKKFS---------------SEIPFGPF 225
>gi|121635532|ref|YP_975777.1| type IV prepilin leader peptidase [Neisseria meningitidis FAM18]
gi|120867238|emb|CAM11007.1| type IV prepilin leader peptidase [Neisseria meningitidis FAM18]
gi|325202848|gb|ADY98302.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis M01-240149]
gi|325208841|gb|ADZ04293.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis NZ-05/33]
Length = 286
Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
LI L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LILTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWL 193
Query: 72 CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLIKGEIGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|261391857|emb|CAX49316.1| type IV prepilin-like proteins leader peptide processing enzyme
PilD (prepilin peptidase) [Includes: leader peptidase;
N-methyltransferase] [Neisseria meningitidis 8013]
gi|325128918|gb|EGC51772.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis N1568]
Length = 286
Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LVLTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWL 193
Query: 72 CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLIKGEIGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|221202532|ref|ZP_03575562.1| type IV prepilin leader peptidase [Burkholderia multivorans CGD2M]
gi|221208146|ref|ZP_03581151.1| type IV prepilin leader peptidase [Burkholderia multivorans CGD2]
gi|221172049|gb|EEE04491.1| type IV prepilin leader peptidase [Burkholderia multivorans CGD2]
gi|221177627|gb|EEE10044.1| type IV prepilin leader peptidase [Burkholderia multivorans CGD2M]
Length = 303
Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L+ + + G
Sbjct: 149 TALAAFGLCAALLAMSAIDMRTGYLPDSMTLPLLWAGLVLNLGGTFASLRSAVIGAMAGY 208
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD+KLL + W GW + + F A+ G ++ +
Sbjct: 209 LFLWSIYWLFKWLRGIEGIGFGDLKLLAALGAWLGWA-ALPQVVLFAAVTGALVGLVATW 267
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG + F AL G
Sbjct: 268 RGR---------------MRFEEPIPFGPFLAAGGAATLFFGTPFYSALGG 303
>gi|121610839|ref|YP_998646.1| prepilin peptidase [Verminephrobacter eiseniae EF01-2]
gi|121555479|gb|ABM59628.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Verminephrobacter eiseniae EF01-2]
Length = 294
Score = 71.8 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 22/162 (13%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+ + A D + ++P+ +++ +L + LL+A + + L + G +
Sbjct: 136 IAWCGFSAASMALACIDWDTTLLPDDITLPLLWAGLLSAALQWIDLPLYDSVLGAVAGYL 195
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F MG GD KL + WFGW L I G+ ++
Sbjct: 196 SLWLVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILLSSVIGAGVGIAMKISS 255
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
R +P+G + GL +
Sbjct: 256 R----------------LREGGYLPFGPFLVGAGLTALVFGP 281
>gi|254561619|ref|YP_003068714.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4]
gi|254268897|emb|CAX24858.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4]
Length = 172
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 77/163 (47%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
S + + ++ PF + +AA SDL + I NRV+ ++ FLL A + GMD+ ++ H
Sbjct: 1 MLSMAAYLLLCVVFPFLMAYAAASDLLTMRISNRVTGLVFVGFLLYALVSGMDWSDLSRH 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L G + +I F FA +GGGD KL STA+W G + + + +
Sbjct: 61 LAAGSLTLVITFALFARGWIGGGDAKLAASTALWIGLANLPEYLILASILGAPLTLSIVS 120
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + + F K +PYGIA++ L+ P+S
Sbjct: 121 ARKYPLPKLALKFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163
>gi|218886139|ref|YP_002435460.1| peptidase A24A domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757093|gb|ACL07992.1| peptidase A24A domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 267
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 18/165 (10%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIV 68
AV+++ L+ A+ D + ++P+ +++ + + A LL M + + G V
Sbjct: 105 AVYMVFGGALLVASFIDFETFILPDVITLTGAVAAPVAAVLLLDMPLADSLIGAVAGGGV 164
Query: 69 FIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F + F + MG GDVKL+ GW + + +
Sbjct: 165 FWLVLAGFKRVRGIDGMGLGDVKLMVLIGGLCGWQALP-------------VVTLLAGLS 211
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + IP+G +S+G +I
Sbjct: 212 ALLAAAWFLRRREEGQSAREVAIPFGPFLSLGAIIYMLYGPALVR 256
>gi|218768892|ref|YP_002343404.1| type IV prepilin leader peptidase [Neisseria meningitidis Z2491]
gi|254805633|ref|YP_003083854.1| leader peptidase [Neisseria meningitidis alpha14]
gi|121052900|emb|CAM09252.1| type IV prepilin leader peptidase [Neisseria meningitidis Z2491]
gi|254669175|emb|CBA07903.1| leader peptidase [Neisseria meningitidis alpha14]
gi|254672313|emb|CBA05438.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Neisseria meningitidis alpha275]
gi|308388540|gb|ADO30860.1| type IV prepilin leader peptidase [Neisseria meningitidis alpha710]
gi|319411193|emb|CBY91598.1| type IV prepilin-like proteins leader peptide processing enzyme
PilD (prepilin peptidase) [Includes: leader peptidase;
N-methyltransferase [Neisseria meningitidis WUE 2594]
gi|325132887|gb|EGC55564.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis M6190]
gi|325138872|gb|EGC61422.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis ES14902]
gi|325205409|gb|ADZ00862.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis M04-240196]
Length = 286
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
LI L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LILTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWL 193
Query: 72 CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLIKGEIGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|325130911|gb|EGC53640.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis OX99.30304]
Length = 286
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
LI L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LILTAFLISLTFIDADTQYLPDSMTLSLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLLTRKTGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|163757625|ref|ZP_02164714.1| putative pilus assembly transmembrane protein [Hoeflea
phototrophica DFL-43]
gi|162285127|gb|EDQ35409.1| putative pilus assembly transmembrane protein [Hoeflea
phototrophica DFL-43]
Length = 147
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
IPNRVSIV+ SF + A L GMD ++ LIVF +CF FA N+MGGGD K+L
Sbjct: 1 MKIPNRVSIVLGLSFFVVAPLSGMDLATFGWSIVAALIVFAVCFALFAVNVMGGGDAKIL 60
Query: 90 TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM-KNKIP 148
++ A+W+G++ + FL F I GG+L++ +L +R N + + + +P F + IP
Sbjct: 61 SAAALWYGFSSDLVVFLGFTGIYGGLLALVVLMLRANQNILLVSPVPIPMHFFKDRAGIP 120
Query: 149 YGIAISMGGLISYPDSYLFKVALMGL 174
YG+AI +YPDS +F A+ L
Sbjct: 121 YGVAIGAAAFSTYPDSRIFIEAIGRL 146
>gi|327538083|gb|EGF24773.1| hypothetical protein RBWH47_03140 [Rhodopirellula baltica WH47]
Length = 234
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+F+ + ++ L A DL + IP+ +S+++ ++++ L + I L G+
Sbjct: 94 LFAIITIVVFSLLAIATACDLRTREIPDWISVLIGVVAIVSSLLGWLGL-SIVWVLAGGV 152
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ +I F F +GGGD KL+ + A+ G + G + + +L +
Sbjct: 153 VGLVIASALFRFAKLGGGDGKLIIALAMLVGPVGILIVLFGMAITGGVLSLIAMLRGQRD 212
Query: 127 TNHIPIFGM 135
++P
Sbjct: 213 YAYVPAIAA 221
>gi|188996427|ref|YP_001930678.1| peptidase A24A domain protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931494|gb|ACD66124.1| peptidase A24A domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 264
Score = 71.4 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 24/183 (13%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMD 54
+K V C++ + DL +IP+ ++ L + A
Sbjct: 95 LKFGFTVDFIFMFYFVACMIALSFIDLEFKIIPDEINFSGLFMGFVYAGYKAYEIRDFHP 154
Query: 55 YELIALHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+ VG F+ +G GDVKLL + GW + + F
Sbjct: 155 LTDALIGAAVGAGFLYALALFYLKVRNIEALGFGDVKLLAFIGSYVGWFGALFTIFFGSL 214
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ F+ + +IP+G +++ G I
Sbjct: 215 LGLLGSVFFMKVYKTDDLSKL--------------EIPFGPFLAIAGTIYLFFGEWIYNF 260
Query: 171 LMG 173
G
Sbjct: 261 YFG 263
>gi|293603184|ref|ZP_06685617.1| type IV prepilin leader peptidase [Achromobacter piechaudii ATCC
43553]
gi|292818415|gb|EFF77463.1| type IV prepilin leader peptidase [Achromobacter piechaudii ATCC
43553]
Length = 287
Score = 71.4 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 21/163 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIAL 60
+ + + L+ D + ++P+ ++ ++ + LL L +
Sbjct: 124 RYGATPVALCAMGLSAMLIALGWIDFETTLLPDVLTQPLVWAGLLVNLFGTFTTLPLAVI 183
Query: 61 HLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+ G + + F F MG GD KLL + WFG S L +++G ++
Sbjct: 184 GAVAGYVFLWVIFHVFRLLTGREGMGYGDFKLLAALGAWFGAE-SLPMLLLGASLVGVLI 242
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ +P+G +++ G++
Sbjct: 243 GGALTLSGRAG---------------RGQPLPFGPYLALAGIV 270
>gi|313667734|ref|YP_004048018.1| type IV prepilin leader peptidase [Neisseria lactamica ST-640]
gi|313005196|emb|CBN86629.1| type IV prepilin leader peptidase [Neisseria lactamica 020-06]
Length = 286
Score = 71.4 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 58/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LVLTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSLWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLLTGKTGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|319795466|ref|YP_004157106.1| prepilin peptidase [Variovorax paradoxus EPS]
gi|315597929|gb|ADU38995.1| Prepilin peptidase [Variovorax paradoxus EPS]
Length = 321
Score = 71.4 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 21/157 (13%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICFCFFA 77
+ L D + +P+ ++ +L L+ A G+ + G + + + +
Sbjct: 167 ICQFLIDFDTQFLPDSLNYTLLWLGLIGAAMGWTGVSLSSAVWGAVFGYLSLWLVYHAYR 226
Query: 78 F----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
MG GD KLL + VW G ++ + +++G ++ + + V + +
Sbjct: 227 LVTGKEGMGYGDFKLLAALGVWLG-ADYLIAIILVSSLVGAVIGLTLRFVGKLAHKDI-- 283
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
I +G ++ GL+
Sbjct: 284 ------------PIAFGPFLAGAGLVCLVIGPELVRQ 308
>gi|307731056|ref|YP_003908280.1| Prepilin peptidase [Burkholderia sp. CCGE1003]
gi|307585591|gb|ADN58989.1| Prepilin peptidase [Burkholderia sp. CCGE1003]
Length = 317
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 21/170 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ L+ + D+ + ++P+ +++ +L + ++ F L + G +
Sbjct: 164 ALAAFGLCAALLAMSAIDIDTHLLPDSMTLPLLWAGIIVNFNGMFASLHDAVLGAIFGYL 223
Query: 68 VFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
V F + MG GD KLL + W GW I+ V
Sbjct: 224 VLWAVHWLFRLVRGIDGMGYGDFKLLAALGAWLGWAALPQ----------------IVLV 267
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG ++ +AL G
Sbjct: 268 AAVAGAVVGLAATWRGRMRFEEPLPFGPFLAAGGALTLFLGTPLYLALGG 317
>gi|295677745|ref|YP_003606269.1| Prepilin peptidase [Burkholderia sp. CCGE1002]
gi|295437588|gb|ADG16758.1| Prepilin peptidase [Burkholderia sp. CCGE1002]
Length = 313
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + L+ + D+ + ++P+ +++ +L + L+ F + L + G
Sbjct: 158 LMALAAFGLCATLLAMSAIDIDTHLLPDSLTLPLLWAGLIVNFNGMFANLHDAVLGAIFG 217
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V F MG GD KLL + W GW +
Sbjct: 218 YLVLWAVHWAFRLVRGIEGMGYGDFKLLAALGAWLGWPALPQI----------------V 261
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
V + + + +P+G ++ GG ++ +AL G
Sbjct: 262 LVAAVAGAVIGLAATWGGRMRFEEPLPFGPFLAAGGALTLFAGTPLYLALGG 313
>gi|170740623|ref|YP_001769278.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46]
gi|168194897|gb|ACA16844.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46]
Length = 168
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + ++ PF + +AA SDL + IPN +S+ +L F + A LLG+ + HL G
Sbjct: 1 MASMFLLVVFPFLMAYAAASDLLTMTIPNALSLALLAVFPVAALLLGLSWGEFGEHLAAG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
I + F F F ++GGGD KL +TA+W G+ P L G + + +
Sbjct: 61 GITLAVTFALFCFGLIGGGDAKLAAATALWLGFEPLADYVLAASLAGGVLTLLILQARAY 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
I + + + +PYGIA++ L+ P + L++ L
Sbjct: 121 PLPRIAASWPWALRLHDTRTGVPYGIALAAAALVVCPSAPLWRALLGA 168
>gi|325266598|ref|ZP_08133275.1| type IV prepilin leader peptidase [Kingella denitrificans ATCC
33394]
gi|324982041|gb|EGC17676.1| type IV prepilin leader peptidase [Kingella denitrificans ATCC
33394]
Length = 301
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 25/173 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + +V D + ++P+ +++ ++ LL L G + LVG +
Sbjct: 145 TVGACLFTAYVVAMTFIDADTQLLPDELTVPLIRWGLLFNLLTGFVSLQQAVWGALVGYM 204
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + + MGGGD ++L++ W G + + +F AI+G + ++
Sbjct: 205 SLWLMSKTYKLLRGVDGMGGGDFQMLSALGAWLGVS-TIPIIVFSAAIVGIVAALI---- 259
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
K + + +G +++ G + + + A
Sbjct: 260 ---------------KRVAKQQPMAFGPCLAVAGWVVFLFHDSVMRGMAWYLA 297
>gi|191171795|ref|ZP_03033341.1| leader peptidase PppA [Escherichia coli F11]
gi|190907830|gb|EDV67423.1| leader peptidase PppA [Escherichia coli F11]
Length = 301
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 159 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 218
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 219 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 273
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 274 ----------------TKRGSTTLPFGPCLSLGGMATLYLQALF 301
>gi|50122021|ref|YP_051188.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Pectobacterium atrosepticum SCRI1043]
gi|49612547|emb|CAG75997.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Pectobacterium atrosepticum SCRI1043]
Length = 282
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 21/142 (14%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFCFFA---- 77
+ D+ + ++P+ +++ +L LL + + + G + + + F
Sbjct: 148 TVIDIKTLLLPDVLTLSLLWVGLLFNLSETFVPVGDAVVGAMAGYLSLWLLYWVFKYATG 207
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GD KLL + W GW + + + A+ G ++++ +R
Sbjct: 208 KEALGYGDFKLLAALGAWLGWQ-ALPNLVLVAALSGLVVTLVWRGLRKE----------- 255
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
+ +G +++GG+
Sbjct: 256 ----DTAKPLAFGPWLAIGGVF 273
>gi|76811550|ref|YP_334899.1| peptidase A24 N- domain-containing protein [Burkholderia
pseudomallei 1710b]
gi|76581003|gb|ABA50478.1| Bacterial Peptidase A24 N-terminal domain family [Burkholderia
pseudomallei 1710b]
Length = 351
Score = 71.0 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 197 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 256
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 257 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 300
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 301 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 351
>gi|242238921|ref|YP_002987102.1| prepilin peptidase [Dickeya dadantii Ech703]
gi|242130978|gb|ACS85280.1| Prepilin peptidase [Dickeya dadantii Ech703]
Length = 283
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFCF 75
L AAL D + ++P+ V++ +L LL + + + + G + + +
Sbjct: 140 CMLTVAALIDARTQLLPDVVTLPLLWCGLLFNLVDTFVPLDEAVIGAVAGYLSLWLVYWG 199
Query: 76 FAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F +G GD KLL + W GW S + + ++ G +L++ ++R +
Sbjct: 200 FRLLSGREALGYGDFKLLAALGAWLGWQ-SLPNLVLIASLTGLLLTLCWRSIRRV----- 253
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
++ + +G +++GG + L
Sbjct: 254 ----------NLQQPLAFGPWLAVGGGVVLFIHAL 278
>gi|325136907|gb|EGC59504.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Neisseria meningitidis M0579]
Length = 286
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 59/167 (35%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ L+ D + +P+ ++++++ L+ G + L + G +
Sbjct: 134 LVLTAFLISLTFIDADTQYLPDSMTLLLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLIKGETGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGPALTVSGWIIFTANDSVWRAVNWW 280
>gi|295697646|ref|YP_003590884.1| Prepilin peptidase [Bacillus tusciae DSM 2912]
gi|295413248|gb|ADG07740.1| Prepilin peptidase [Bacillus tusciae DSM 2912]
Length = 256
Score = 70.7 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 21/172 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGL 66
+A+ L+ L+ + DL ++P+ ++ + + +G + +G
Sbjct: 99 ETALGLVVISFLIALSTIDLEWKILPDELTYPLAIVVVGARLWMGPEPWWWYLGGAALGA 158
Query: 67 IVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + + F MG GDVKL+ + G T + ++ LF ++ G ++ + +
Sbjct: 159 GMLLTLYWLSPLLFGKEGMGLGDVKLMVGLGAFTGLTGTVIT-LFAASLAGLVVGLVL-- 215
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ +IP+G ++ G L+S+ A GL
Sbjct: 216 -------------QRMDRLGEQRRIPFGPFLAGGALLSWLYGDALMKAYFGL 254
>gi|322831057|ref|YP_004211084.1| Prepilin peptidase [Rahnella sp. Y9602]
gi|321166258|gb|ADW71957.1| Prepilin peptidase [Rahnella sp. Y9602]
Length = 277
Score = 70.7 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 23/144 (15%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVFIICFCFFAF----N 79
DL + ++P+R+++ +L + LL + + + + G + +
Sbjct: 141 IDLATYLLPDRLTLPLLWAGLLVHSLYGSVTLQNALYGAVAGYLALWFLYWSVKLVSGKE 200
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MG GD KLL + W GW A+ G + ++ +++ ++
Sbjct: 201 GMGYGDFKLLAALGAWVGWQ-MLPYLCILAALAGIVFTLVRVSIYKMSEQT--------- 250
Query: 140 SFLMKNKIPYGIAISMGGLISYPD 163
P+G +++ G + Y
Sbjct: 251 --------PFGPCLALAGALIYIS 266
>gi|332969023|gb|EGK08063.1| type IV prepilin leader peptidase [Kingella kingae ATCC 23330]
Length = 300
Score = 70.7 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 25/159 (15%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + +V D + ++P+ ++I ++ LL L G +L+G +
Sbjct: 144 TVGACLFTAYVVAMTFIDADTQLLPDDLTIPLMRWGLLFNLLTGFIPLTQSVWGMLIGYM 203
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD K+L + W G + + + +
Sbjct: 204 SLWTLSQTYKLIRGVDGMGAGDFKMLAAIGAWLGAWILPVVIFAAAMVFLVVAII----- 258
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + YG + + G + +
Sbjct: 259 ---------------RGIGKEQPMAYGPCLGVAGWLVFL 282
>gi|291525222|emb|CBK90809.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family
A24A [Eubacterium rectale DSM 17629]
Length = 253
Score = 70.7 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 18/169 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S ++ L+ ++ D + IP ++I +L +L FL ++ +
Sbjct: 101 LTSIIYCFLTSALIVLSVIDWRTYEIPFGINIFILVLGILHVFLDHDNWSEYVIGFFCVS 160
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ I +GGGDVKL+ + GW L+F I I + +
Sbjct: 161 LFLEILLLVSGGRAIGGGDVKLMACAGLAIGWQNITLAFFLGCIIGSVIHLIRM------ 214
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
K N++ G ++ G IS A + L+
Sbjct: 215 ------------KVTNAGNRLAMGPYLAAGIFISMLWGEKMISAYLTLA 251
>gi|158521866|ref|YP_001529736.1| peptidase A24A domain-containing protein [Desulfococcus oleovorans
Hxd3]
gi|158510692|gb|ABW67659.1| peptidase A24A domain protein [Desulfococcus oleovorans Hxd3]
Length = 259
Score = 70.7 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 21/179 (11%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIA 59
+ S V+ + L+ D+ +IP+ +S+ + F L + F++
Sbjct: 94 INFGLTAESLVYFVFIASLIVVIFIDIDYQIIPDVISLPGIPIFFLASVFIVRATVTDSL 153
Query: 60 LHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L +L G + + MGGGD+KLL GW + F ++ G +
Sbjct: 154 LGILAGGGSLLAVAVIYRLITGKEGMGGGDIKLLAMIGALCGWQGVLFTI-FTSSLAGTV 212
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + I+ ++ MK +P+G +SMG ++ + +
Sbjct: 213 VGMVIMAMQKK---------------NMKLALPFGPFLSMGAIVYLFFGPELVAWYLNM 256
>gi|91762804|ref|ZP_01264769.1| Type II Secretion PilD [Candidatus Pelagibacter ubique HTCC1002]
gi|91718606|gb|EAS85256.1| Type II Secretion PilD [Candidatus Pelagibacter ubique HTCC1002]
Length = 199
Score = 70.7 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 26/176 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL------TAFLLGMDYELIAL 60
+ + +F I C V DL +IPN ++ ++ LL L + +
Sbjct: 40 LTTLLFFILSICFVIIFFIDLKHFIIPNELTYPLMIIGLLKSFDPNLNTTLFPNLVNSLI 99
Query: 61 HLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
L G I+ + + MG GD KLL+ WFGW F I +
Sbjct: 100 GGLFGYIIIWLIIFTYKKLRNKEGMGLGDAKLLSVIGFWFGWASIPFVIFFSSVIALLSV 159
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
I+ + + ++IP+G + +G L+ + ++ L
Sbjct: 160 VPDIIKNKK----------------DLSSQIPFGPYLIIGNLVFLIFNEQIRLFLN 199
>gi|117625272|ref|YP_854416.1| putative prepilin peptidase A [Escherichia coli APEC O1]
gi|237706288|ref|ZP_04536769.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|115514396|gb|ABJ02471.1| putative prepilin peptidase A [Escherichia coli APEC O1]
gi|226899328|gb|EEH85587.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|315288710|gb|EFU48108.1| bacterial Peptidase A24 protein [Escherichia coli MS 110-3]
Length = 301
Score = 70.7 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 159 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 218
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 219 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 273
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 274 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 301
>gi|116621340|ref|YP_823496.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
Ellin6076]
gi|116224502|gb|ABJ83211.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
Ellin6076]
Length = 184
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 18/173 (10%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ ++ AA+ D+ IPN +++ + + + L + L + F +
Sbjct: 13 LLLAVVLGAAIYDIRYRRIPNWLNMFGVLAGIAMNTFLYQGLPGLVFALKGLFLAFAVYV 72
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+A + MG GDVKL+ + GW F F+ I GGI+S+ ++ R
Sbjct: 73 VLYALHAMGAGDVKLMAAVGAIVGWENWFGIFIVTAVI-GGIMSLILVASRGRVKKTLFN 131
Query: 134 GMFVPKSFLMKNK-----------------IPYGIAISMGGLISYPDSYLFKV 169
F+ +P+G I++G L S F
Sbjct: 132 VSFILSEMKSGRPAYLANEELDVKSDKAMRLPHGATIAVGALFFLAMSARFTR 184
>gi|323702303|ref|ZP_08113969.1| Prepilin peptidase [Desulfotomaculum nigrificans DSM 574]
gi|323532793|gb|EGB22666.1| Prepilin peptidase [Desulfotomaculum nigrificans DSM 574]
Length = 244
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 17/162 (10%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ L+ + DL +IP+++ + +++ + ++Y + L+ ++
Sbjct: 99 LLFIATLIVISFIDLDHYIIPDKILFFFIVAWVAFIPFIPINYINSLIGLVSA-GGLLLF 157
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ MGGGD+KL ++ GW + L+ + G + + IL
Sbjct: 158 IALLSKGGMGGGDIKLAAVIGLYLGWPNALLAMFLACFLAGIVGILLILLKIK------- 210
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K+ IP+G I+ I+ M L
Sbjct: 211 ---------SRKDIIPFGPFIAAASYITLLWGEQILNWYMSL 243
>gi|227114122|ref|ZP_03827778.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Pectobacterium carotovorum subsp. brasiliensis PBR1692]
Length = 281
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 21/142 (14%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFCFFA---- 77
+ D+ + ++P+ +++ +L LL + + + G + + + F
Sbjct: 147 TVIDIKTLLLPDVLTLSLLWIGLLFNLSETFVPLSDAVVGAMAGYLSLWLLYWVFKYATG 206
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GD KLL + W GW + + + A+ G ++++ +R
Sbjct: 207 KEALGYGDFKLLAALGAWLGWQ-ALPNLVLVAALSGLVVTLVWRGLRKE----------- 254
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
+ +G ++MGG+
Sbjct: 255 ----DTAKPLAFGPWLAMGGVF 272
>gi|170702929|ref|ZP_02893769.1| Prepilin peptidase [Burkholderia ambifaria IOP40-10]
gi|170132168|gb|EDT00656.1| Prepilin peptidase [Burkholderia ambifaria IOP40-10]
Length = 303
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 149 AALAAFGLCAALLAMSAIDIQTGYLPDSMTLPLLWAGLALNLGGTFTSLRSAVVGAMAGY 208
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD+KLL + W GW + + F A+ G I+ +
Sbjct: 209 LFLWSIYWLFKWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAIVGLVATW 267
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG+ + F +AL G
Sbjct: 268 RGR---------------MRFEEPIPFGPFLAAGGVATLFLGTPFYLALGG 303
>gi|89098961|ref|ZP_01171841.1| signal peptidase (late competence protein) [Bacillus sp. NRRL
B-14911]
gi|89086365|gb|EAR65486.1| signal peptidase (late competence protein) [Bacillus sp. NRRL
B-14911]
Length = 247
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ A+ LV +SD+ +IP++V +V FLL + + +
Sbjct: 88 LMMGWTFELAIAWTLISLLVIVFVSDIKYMIIPDKVLLVFAVIFLLERIFIPLSPWWDSA 147
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
++ + MGGGD+KL + G L+F +
Sbjct: 148 AGAAAGFFLLLFIAVVSKGGMGGGDIKLFAVIGLALGTKLVLLTFFLATLFGAFFGIAGL 207
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L + IP+G I++G L +Y
Sbjct: 208 LAGK----------------IEKGKPIPFGPYIALGCLTAYFMGD 236
>gi|320101690|ref|YP_004177281.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644]
gi|319748972|gb|ADV60732.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644]
Length = 269
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
AV ++ ++ AA+ D + +PN ++ LG+ +L ++G +
Sbjct: 16 LAVLVVICAVMIEAAIIDGWKLKVPNWLTYNFLGAGILY--WTVTSGWAGFQFAMLGFLA 73
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ + MG GDVKLL W GW + + F + G + + + + +
Sbjct: 74 GFVLYPLCLVGGMGAGDVKLLFGIGAWTGWYATLVIFALCAVVGGIMAVIMMAREGQLAH 133
Query: 129 HIPIFGMFVPKSFLMKNK 146
+ + + + + +KN
Sbjct: 134 RLLNLQIILSEWWSLKNP 151
>gi|254443680|ref|ZP_05057156.1| Bacterial Peptidase A24 N-terminal domain family [Verrucomicrobiae
bacterium DG1235]
gi|198257988|gb|EDY82296.1| Bacterial Peptidase A24 N-terminal domain family [Verrucomicrobiae
bacterium DG1235]
Length = 293
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 24/173 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------------- 53
+ + +I LV + D IP+R SI + + L+
Sbjct: 106 LKALCIMIFAAMLVCGSFIDFDHMEIPDRFSIGLAVIGFALSVLIPELHGFDRADFAGAS 165
Query: 54 ------DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
I + L + ++ MG GDVKLL + GW +
Sbjct: 166 INATLQSILGILIGSGTILWIALLAEIVLRKEAMGFGDVKLLGGIGAFLGWQGA-----I 220
Query: 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F G ++ L + I + L+ IP+G ++ G L+
Sbjct: 221 FSIFGGALIGCVGLLLWAIAKRMISSKRTSNDEALLGRHIPFGPMLAGGALLY 273
>gi|327398770|ref|YP_004339639.1| Prepilin peptidase [Hippea maritima DSM 10411]
gi|327181399|gb|AEA33580.1| Prepilin peptidase [Hippea maritima DSM 10411]
Length = 256
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 19/177 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYEL 57
M+ + +L+ + L+ A+ DL +IP+R+S+ ++ L+ ++ G
Sbjct: 96 MRFGLSLDGVFYLVFVYSLIVASFVDLKHYIIPDRISLGLIAVGLVFGYIRGDFLGSLYG 155
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
I+ II F MGGGD+KLL + G S LF ++ G +
Sbjct: 156 FLAGFFGLYIMAIIGSWVFKKEAMGGGDIKLLGGIGAFLGIKGVLFS-LFSASLFGSFVG 214
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ ++ + + +G +S+G ++ L G
Sbjct: 215 IALILFGKKSYADKLQ---------------FGPYLSVGAVLYIFIGKQLIFYLYGW 256
>gi|187925426|ref|YP_001897068.1| prepilin peptidase [Burkholderia phytofirmans PsJN]
gi|187716620|gb|ACD17844.1| Prepilin peptidase [Burkholderia phytofirmans PsJN]
Length = 306
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
+ L+ + D+ + ++P+ +++ +L + ++ F L + G
Sbjct: 152 TALAAFGLCATLLAMSAIDIDTHLLPDSMTLPLLWAGIIVNFNGMFTNLHDAVLGAIFGY 211
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+V + F MG GD KLL + W GW + + +
Sbjct: 212 LVLWVVHWVFLLIRGVEGMGHGDFKLLAALGAWLGWAALPQIVVVAAVTGAVVGLLATWR 271
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
R + +P+G ++ GG ++ +AL G
Sbjct: 272 GR----------------MRFEEPLPFGPFLAAGGALTLFLGTPLYLALGG 306
>gi|170695305|ref|ZP_02886451.1| Prepilin peptidase [Burkholderia graminis C4D1M]
gi|170139705|gb|EDT07887.1| Prepilin peptidase [Burkholderia graminis C4D1M]
Length = 317
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 21/172 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + L+ + D+ + ++P+ +++ +L + ++ F L + G
Sbjct: 162 LAALAAFGLCAALLAMSAIDMDTHLLPDSMTLPLLWAGIIVNFNGMFATLHDAVLGAIFG 221
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V F + MG GD KLL + W GW I+
Sbjct: 222 YLVLWAVHWLFRLVRGIDGMGYGDFKLLAALGAWLGWAALPQ----------------IV 265
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
V + + + +P+G ++ GG ++ +AL G
Sbjct: 266 LVAAVAGAVVGLAATWRGRMRFEEPLPFGPFLAAGGALTLFLGTPLYLALGG 317
>gi|317152653|ref|YP_004120701.1| Prepilin peptidase [Desulfovibrio aespoeensis Aspo-2]
gi|316942904|gb|ADU61955.1| Prepilin peptidase [Desulfovibrio aespoeensis Aspo-2]
Length = 259
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 20/163 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVG 65
+ V+LI LV + D + M+P+R+++ L +L + G
Sbjct: 103 LTWGVYLILGCLLVAGSFIDFETFMLPDRITLGGAVLALGAGIILPEPGWRDSVAGAACG 162
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + +G GDVKL+ G T L+ L A G V++L
Sbjct: 163 GAFFWLLQRAYRLWRDEEGLGTGDVKLMVMIGAMTGLTGLPLTILAAAATSGLACVVYML 222
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
P + +K +IP+G +S+G +
Sbjct: 223 ---------------RPGAKGLKTRIPFGPFLSLGCMFYVLYG 250
>gi|16329234|ref|NP_439962.1| type 4 prepilin peptidase [Synechocystis sp. PCC 6803]
gi|7674097|sp|P72640|LEP4_SYNY3 RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|1651714|dbj|BAA16642.1| type 4 prepilin peptidase [Synechocystis sp. PCC 6803]
Length = 269
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 27/176 (15%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + I L+ L D + +PN ++ L LL LLG + L+ +
Sbjct: 103 QTFGYWILISFLISLTLIDWDTMTLPNSLTKPGLVLGLLFHLLLGWQRGHWIVPLVEAIA 162
Query: 68 VFIICFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
++ F MG GD KL + W GW L+ I
Sbjct: 163 SAVLGLWLFDLIRMGGSLLLGREGMGDGDPKLASMVGAWLGWPSLLLTTFIACFIG---- 218
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
I + + + P+G +++G LIS + +
Sbjct: 219 ------------SIYGGLKLLLGTLQRRQGFPFGPFLAIGALISLFWGEKLITSYL 262
>gi|193734238|gb|ACF19889.1| PilD [Kingella kingae]
Length = 302
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 25/159 (15%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + +V D + ++P+ ++I ++ LL L G +L+G +
Sbjct: 146 TVGACLFTAYVVAMTFIDADTQLLPDDLTIPLMRWGLLFNLLTGFIPLTQSVWGMLIGYM 205
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD K+L + W G + + + +
Sbjct: 206 SLWTLSQTYKLIRGVDGMGAGDFKMLAAIGAWLGAWILPVVIFAAAMVFLVVAII----- 260
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + YG + + G + +
Sbjct: 261 ---------------RGIGKEQPMAYGPCLGVAGWLVFL 284
>gi|291529318|emb|CBK94904.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family
A24A [Eubacterium rectale M104/1]
Length = 253
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 18/169 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S ++ L+ ++ D + IP ++I +L +L FL ++ +
Sbjct: 101 LTSIIYCFLTSALIVLSVIDWRTYEIPFGINIFILVLGILHVFLDHDNWSEYVIGFFCVS 160
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ I +GGGDVKL+ + GW L+F I I + +
Sbjct: 161 LFLEILLLVSGGRAIGGGDVKLMACAGLAIGWQNITLAFFLGCIIGSVIHLIRM------ 214
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
K N++ G ++ G IS A + L+
Sbjct: 215 ------------KVTNAGNRLAMGPYLATGIFISMLWGEKMISAYLTLA 251
>gi|300309697|ref|YP_003773789.1| bifunctional leader peptidase/N-methyltransferase transmembrane
protein [Herbaspirillum seropedicae SmR1]
gi|300072482|gb|ADJ61881.1| bifunctional enzyme: leader peptidase/N-methyltransferase
transmembrane protein [Herbaspirillum seropedicae SmR1]
Length = 287
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 21/151 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
V + LV A D + ++P+ +++ ++ LL + + L G
Sbjct: 130 VTGLAVMACTATLVALAFIDAQTMLLPDDLTLPLMWLGLLVNLTHRLVPLQDAVLGAAAG 189
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + F F + +G GD KL+ + W GW + L A+ + V +
Sbjct: 190 YGVLWLIFWLFKLITGKDGLGYGDFKLMAALGAWLGWQALPVILLLASAMGAVLGVVLMA 249
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
R IP+G
Sbjct: 250 AGR----------------HRRGQAIPFGPC 264
>gi|325498528|gb|EGC96387.1| putative prepilin peptidase A [Escherichia fergusonii ECD227]
Length = 301
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + LVG I
Sbjct: 159 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGALVGFI 218
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F + +G GDV L + W G S + + G I +V
Sbjct: 219 TFYSLRWLAGIILRKEALGMGDVLLFAALGSWVG-ALSLPNVALIASCCGLIYAVI---- 273
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 274 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 301
>gi|238787287|ref|ZP_04631086.1| Type IV prepilin peptidase [Yersinia frederiksenii ATCC 33641]
gi|238724549|gb|EEQ16190.1| Type IV prepilin peptidase [Yersinia frederiksenii ATCC 33641]
Length = 277
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 22/164 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFII 71
L+ + L+ DL ++P+ +++ +L LL + G I
Sbjct: 131 LVLIWGLIALTFIDLDCYLLPDNITLPLLWIGLLININDTFSPLSFSVVGAAAGYIFLWF 190
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + MG GD KL+ + WFG L +
Sbjct: 191 PYFLFKVFKGIDGMGYGDFKLMAALGAWFGVAAIPFLILLSSCLGIISYIFIYYFSNNKL 250
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
I +G I++ G I
Sbjct: 251 -----------------KHIAFGPYIALSGGIYLFFGDQITFLF 277
>gi|221213260|ref|ZP_03586235.1| type IV prepilin leader peptidase [Burkholderia multivorans CGD1]
gi|221166712|gb|EED99183.1| type IV prepilin leader peptidase [Burkholderia multivorans CGD1]
Length = 303
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 149 TALAAFGLCAALLAMSAIDMRTGYLPDSMTLPLLWAGLALNLGGTFASLRSAVIGAMAGY 208
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD+KLL + W GW + + F A+ G ++ +
Sbjct: 209 LFLWSIYWLFKWLRGIEGIGFGDLKLLAALGAWLGWA-ALPQVVLFAAVTGALVGLVATW 267
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GG + F AL G
Sbjct: 268 RGR---------------MRFEEPIPFGPFLAAGGAATLFFGTPFYSALGG 303
>gi|312958904|ref|ZP_07773423.1| type IV pilus prepilin peptidase PilD [Pseudomonas fluorescens WH6]
gi|311286674|gb|EFQ65236.1| type IV pilus prepilin peptidase PilD [Pseudomonas fluorescens WH6]
Length = 286
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 21/170 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
+ ++ + L+ +L D ++P+ + + +L L+ + ++G
Sbjct: 127 QAGAVMLLSWGLLAMSLIDADHQLLPDVLVLPLLWLGLIVNGFGWLTTLSDALWGAVIGY 186
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F + MG GD KLL W GW L +++G + + ++
Sbjct: 187 MSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQ-ILPMTLLMSSLVGVFVGLILMR 245
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+R +P+G +++ G I+ +
Sbjct: 246 LRRAQAS---------------TPMPFGPYLAIAGWIALLWGDQITDFYL 280
>gi|241664290|ref|YP_002982650.1| Prepilin peptidase [Ralstonia pickettii 12D]
gi|240866317|gb|ACS63978.1| Prepilin peptidase [Ralstonia pickettii 12D]
Length = 293
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 56/164 (34%), Gaps = 22/164 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + + L+ + D + ++P+ ++ +L L F + + + G +
Sbjct: 135 AVASAVLLWFLIAGTMIDADTQLLPDAITQPLLWLGLGVNLFDMFTHLHDAVIGAMAGYL 194
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+ + WFGW ++ +L +
Sbjct: 195 FLWSIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQ-----------------ALPLLVL 237
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ + + + ++ +G I+ G+I+
Sbjct: 238 LSSVVGLVFGLVRIARGAKSESPFSFGPFIAGAGVIALLAGPQL 281
>gi|320181008|gb|EFW55929.1| leader peptidase PppA [Shigella boydii ATCC 9905]
Length = 248
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 105 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 164
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 165 IAFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASFCGLIYAVI--- 220
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 221 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 248
>gi|188581658|ref|YP_001925103.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001]
gi|179345156|gb|ACB80568.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001]
Length = 172
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 75/163 (46%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
S + + ++ PF + +AA SDL + I NRV+ ++ F+L A GM + ++ H
Sbjct: 1 MSSMATYVLLCVVFPFLMAYAAASDLLTMRISNRVTSLVSLGFVLYAVASGMAWADLSRH 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L G + +I F FFA +GGGD KL STA+W G L + G + +
Sbjct: 61 LAAGALTLLITFFFFARGWIGGGDAKLAASTALWIGLGHLLDYLLMASLLGGPLTLTILS 120
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ F + IPYGIA++ L+ P++
Sbjct: 121 ARTYPLPKPVLKLPFAVHLHDARTGIPYGIALAAAALLVLPNA 163
>gi|238924538|ref|YP_002938054.1| prepilin peptidase [Eubacterium rectale ATCC 33656]
gi|238876213|gb|ACR75920.1| prepilin peptidase [Eubacterium rectale ATCC 33656]
Length = 253
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 18/169 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S ++ L+ ++ D + IP ++I +L +L FL ++ +
Sbjct: 101 LTSIIYCFLTSALIVLSVIDWRTYEIPLGINIFILVLGILHVFLDHDNWSEYVIGFFCVS 160
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ I +GGGDVKL+ + GW L+F I I + +
Sbjct: 161 LFLEILLLVSGGRAIGGGDVKLMACAGLAIGWQNITLAFFLGCIIGSVIHLIRM------ 214
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
K N++ G ++ G IS A + L+
Sbjct: 215 ------------KVTNAGNRLAMGPYLAAGIFISMLWGEKMISAYLTLA 251
>gi|33594672|ref|NP_882316.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Bordetella pertussis Tohama I]
gi|33564748|emb|CAE44073.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Bordetella pertussis Tohama I]
gi|332384083|gb|AEE68930.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Bordetella pertussis CS]
Length = 326
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 21/161 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + L+ A DL +++P+ V++ ++ + LL + L L + G +
Sbjct: 173 ALAAMGLTGALLALAWIDLEHSLLPDAVTLPLIWAGLLVNLDGALAPLPLAVLGAVAGYL 232
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F FF + MG GD KL+ + W G + L ++ G ++ +
Sbjct: 233 FLWVIFHFFRLLTGRDGMGHGDFKLMAALGAWLGL-GALPWLLLGASLAGVLVGWSLRLA 291
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ +P+G +++GG++ +
Sbjct: 292 GRVG---------------RGQPLPFGPYLALGGILMLLAA 317
>gi|238756271|ref|ZP_04617587.1| Type II secretory pathway, prepilin signal peptidase PulO and
peptidase [Yersinia ruckeri ATCC 29473]
gi|238705526|gb|EEP97927.1| Type II secretory pathway, prepilin signal peptidase PulO and
peptidase [Yersinia ruckeri ATCC 29473]
Length = 263
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 21/153 (13%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFIICFC 74
+ L+ + D+ ++P+ +++ +L LL F + + + G ++ +
Sbjct: 124 SWMLIALTMIDIDHLLLPDNLTLPLLWMGLLFHLFDSRLALSEAVIGAVAGYLILWCLYW 183
Query: 75 ----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+G GD KLL + W GW + S L ++ G ++ +R +
Sbjct: 184 SFWLLTKREALGYGDFKLLAALGAWLGW-MALPSLLLIASLCGMSFALAARLLRGRPLN- 241
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+P+G ++ GG I +
Sbjct: 242 --------------TALPFGPFLAFGGWILFLQ 260
>gi|300931847|ref|ZP_07147144.1| bacterial Peptidase A24 protein [Escherichia coli MS 187-1]
gi|300460270|gb|EFK23763.1| bacterial Peptidase A24 protein [Escherichia coli MS 187-1]
Length = 301
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG
Sbjct: 158 ALAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWVQQSPLTLQDAVTGVLVGF 217
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 218 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI--- 273
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 274 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 301
>gi|238796146|ref|ZP_04639657.1| Type II secretory pathway, prepilin signal peptidase PulO and
peptidase [Yersinia mollaretii ATCC 43969]
gi|238720091|gb|EEQ11896.1| Type II secretory pathway, prepilin signal peptidase PulO and
peptidase [Yersinia mollaretii ATCC 43969]
Length = 265
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 21/160 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
L+ + L+ + D+ ++P+ +++ +L + LL F + + G +
Sbjct: 118 LLAALLLSWMLIALTMIDIDHLLLPDNLTLPLLWAGLLFHLFDDSLPLSDAIIGAASGYL 177
Query: 68 VFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F +G GD KLL + W GW + S L ++ G ++
Sbjct: 178 ILWCLYWVFWGVTQRETLGYGDFKLLAALGAWLGW-MALPSLLLIASLAGITFALVARLF 236
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ + +P+G ++ G + + +
Sbjct: 237 KGRPLN---------------TALPFGPFLAFSGWLLFLE 261
>gi|58651778|emb|CAI50958.1| putative prepilin-like protein [uncultured bacterium]
Length = 300
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 21/187 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------------------ 48
+ + ++++ LV DL IP+ V++ + + T+
Sbjct: 105 IATPIYMLLSAALVLVTFVDLTDWTIPDEVTLPGIPVGIATSVLFMLYPKSGLAVMGPFE 164
Query: 49 FLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
+ + + V + MG GDVKL +FG + L +
Sbjct: 165 MPVFNSLLGVVVGGGVLYALDKGALLLLKKPGMGFGDVKLNAMLGAFFGLYGAILIIVIA 224
Query: 109 VAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM---KNKIPYGIAISMGGLISYPDSY 165
I + + IL + + + +P+G +++ G+I
Sbjct: 225 AFIGSFVGILMILAGKRNPAPGGPTEDSGEEPAGRPASGHYLPFGPYLALAGVIVMLAGP 284
Query: 166 LFKVALM 172
Sbjct: 285 AIIGFYF 291
>gi|327441707|dbj|BAK18072.1| type II secretory pathway, prepilin signal peptidase PulO
[Solibacillus silvestris StLB046]
Length = 250
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 16/167 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
AV L+ LV +SD+ +IP+++ + L ++ L +D ++
Sbjct: 99 ELAVALLFISLLVIINVSDIAYMLIPDKILLFFLPLLIVARILSPLDPWWDSIIGAAIGF 158
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
++ + MGGGD+KL + G + L+ I + + +
Sbjct: 159 SILLLIAVISKGGMGGGDIKLFLLIGLVLGTFNTLLTLFLASVIGMIVGIIILKVRGK-- 216
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K +P+G +I++ +I Y + L
Sbjct: 217 --------------GRKTPVPFGPSIAIAAIIVYFYGDQLIDLYLNL 249
>gi|207721488|ref|YP_002251928.1| type 4 prepilin peptidase bifunctionnal: leader peptidase and
n-methyltransferase protein [Ralstonia solanacearum
MolK2]
gi|206586648|emb|CAQ17234.1| type 4 prepilin peptidase bifunctionnal: leader peptidase and
n-methyltransferase protein [Ralstonia solanacearum
MolK2]
Length = 293
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 22/166 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + + L+ + D + ++P+ V+ +L LL F + + + G +
Sbjct: 135 AVASAVLLWFLIAGTMIDADTQLLPDAVTQPLLWLGLLVNLFDMFARLPDAVIGAMAGYL 194
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+ + WFGW + + +++G + +
Sbjct: 195 FLWAIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQ-ALPLLILLSSVVGLVFGAARIA- 252
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + +G I+ G+I+
Sbjct: 253 ---------------RGAESDSPFSFGPFIAGAGVIALLAGPQLVA 283
>gi|309783038|ref|ZP_07677757.1| prepilin peptidase [Ralstonia sp. 5_7_47FAA]
gi|308918146|gb|EFP63824.1| prepilin peptidase [Ralstonia sp. 5_7_47FAA]
Length = 290
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 56/164 (34%), Gaps = 22/164 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + + L+ + D + ++P+ ++ +L L F + + + G +
Sbjct: 132 AVASAVLLWFLIAGTMIDADTQLLPDAITQPLLWLGLGVNLFDMFTHLHDAVIGAMAGYL 191
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+ + WFGW ++ +L +
Sbjct: 192 FLWSIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQ-----------------ALPLLVL 234
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ + + + ++ +G I+ G+I+
Sbjct: 235 LSSVVGLVFGLVRIARGAKSESPFSFGPFIAGAGVIALLAGPQL 278
>gi|225575017|ref|ZP_03783627.1| hypothetical protein RUMHYD_03098 [Blautia hydrogenotrophica DSM
10507]
gi|225037768|gb|EEG48014.1| hypothetical protein RUMHYD_03098 [Blautia hydrogenotrophica DSM
10507]
Length = 232
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 18/160 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S + + L+ A +D S +IP +++ + L+ L ++ L
Sbjct: 71 LESGFYCLMASALLILAFTDWNSYLIPPEINLFLFCLGLVHLVLDWGEWPSYLLGAAGVG 130
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
I I F +GGGDVKL+ + + G+ +FL I S+ + R
Sbjct: 131 IPLWIVFEISKGRSLGGGDVKLMAAVGLLLGFWRGTFTFLIACMAAAFIQSLCLSAGRKE 190
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
G +++G L +
Sbjct: 191 KIIAL------------------GPYLAVGTLFMALWGEV 212
>gi|62181946|ref|YP_218363.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|62129579|gb|AAX67282.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322716433|gb|EFZ08004.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
Length = 197
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R + +L LL L + G
Sbjct: 45 VALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAG 104
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L + W W L + G V +L
Sbjct: 105 YGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALL 164
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 165 VRGKSALI---------------NPLPFGPWLAVAGFIT 188
>gi|157372474|ref|YP_001480463.1| prepilin peptidase [Serratia proteamaculans 568]
gi|157324238|gb|ABV43335.1| Prepilin peptidase [Serratia proteamaculans 568]
Length = 287
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 21/158 (13%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIV 68
+ ++ L+ A+ D ++P+ +++ +L L +L D+ L + G +V
Sbjct: 142 VMMMVSSALLLSLAIIDFRHQILPDILTLTLLWCGLFWHWLEQRDFLGDAVLGAIAGYLV 201
Query: 69 FIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + +G GD KLL + W GW L + + + R
Sbjct: 202 LWLLYWSLRLMTGKEGLGYGDFKLLAALGAWLGWQK-LPEILLIASTATLFVILLFAKKR 260
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ P P+G + + G I
Sbjct: 261 ANSWSQPQ---------------PFGPGLCVAGAICLI 283
>gi|238752491|ref|ZP_04613966.1| Type IV prepilin peptidase [Yersinia rohdei ATCC 43380]
gi|238709254|gb|EEQ01497.1| Type IV prepilin peptidase [Yersinia rohdei ATCC 43380]
Length = 279
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 22/169 (13%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIAL 60
A L+ + L+ DL ++P+ +++ +L LL + L L
Sbjct: 122 TYQDYFIIAASLLLIWSLIVLTFIDLDCYLLPDNITLPLLWVGLLVNINDVFSPLHLSVL 181
Query: 61 HLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+VG I + F MG GD KL+ WFG T L
Sbjct: 182 GAVVGYIFLWFPYWTFKFFKGIVGMGHGDFKLMAMLGAWFGVTAIPFLVLLSSCFGVVSY 241
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
V + I +G I++ G+I
Sbjct: 242 IVIYYCLNKRL-----------------KYIAFGPYIALAGVIYLFFGE 273
>gi|212638474|ref|YP_002314994.1| type II secretory pathway, prepilin signal peptidase PulO
[Anoxybacillus flavithermus WK1]
gi|212559954|gb|ACJ33009.1| Type II secretory pathway, prepilin signal peptidase PulO
[Anoxybacillus flavithermus WK1]
Length = 249
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 19/170 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL--TAFLLGMDYELIALHLLVG 65
AV + +SD+ +IPNRV + + L+ +F + L VG
Sbjct: 96 EVAVSWTLISLFIIIFVSDVHYMIIPNRVLLFLAPLLLIERLSFAPLTPWWDSLLGSFVG 155
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + MGGGD+KL + G + L+F + + + R
Sbjct: 156 FTMLFVIALLSK-GGMGGGDIKLFAVIGLALGAKLTVLAFFLSTLVGTVFGLIGMALGR- 213
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+P+G AI +G LI+Y A + +
Sbjct: 214 ---------------VRRGQPMPFGPAIVVGTLIAYFFGETIIDAYVKVM 248
>gi|261378359|ref|ZP_05982932.1| type IV prepilin leader peptidase [Neisseria cinerea ATCC 14685]
gi|269145467|gb|EEZ71885.1| type IV prepilin leader peptidase [Neisseria cinerea ATCC 14685]
Length = 286
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
LI L+ L D + +P+ +++ ++ LL F + + + G +
Sbjct: 134 LILTAFLISLTLIDADTQYLPDSMTLPLIWLGLLFNFNGDFVSLQSAVSGAVAGYGSLWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KLL + W G + +F A++G ++V +
Sbjct: 194 LCAVYKLLTGKIGMGNGDFKLLAALGAWLGIS-VLPVLVFLAALVGLAMAVIM------- 245
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G A+++ G I + + A+
Sbjct: 246 ------------RISKGQYFAFGPALAISGWIIFAANDSVLRAVNWW 280
>gi|323183553|gb|EFZ68950.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli 1357]
Length = 269
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCFGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|300702979|ref|YP_003744581.1| protein secretion protein XcpA [Ralstonia solanacearum CFBP2957]
gi|299070642|emb|CBJ41937.1| type 4 prepilin-like proteins leader peptide processing enzyme
(Protein secretion protein XCPA) [Includes: Leader
peptidase (Prepilin peptidase); N-methyltransferase]
[Ralstonia solanacearum CFBP2957]
Length = 290
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 22/166 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + L+ A + D + ++P+ ++ +L LL F + + + G +
Sbjct: 132 AVASAALLWFLIAATMIDADTQLLPDAITQPLLWLGLLVNLFDMFARLPDAVIGAMAGYL 191
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+ + WFGW + + +++G + +
Sbjct: 192 FLWAIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQ-ALPLLILLSSVVGLVFGAARIA- 249
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + +G I+ G+I+
Sbjct: 250 ---------------RGAESDSPFSFGPFIAGAGVIALLAGPQLVA 280
>gi|309703401|emb|CBJ02740.1| type II secretion system leader peptidase [Escherichia coli ETEC
H10407]
Length = 269
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 IAFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGTTTLPFGPCLSLGGIATIYLQALF 269
>gi|239827894|ref|YP_002950518.1| peptidase A24A domain protein [Geobacillus sp. WCH70]
gi|239808187|gb|ACS25252.1| peptidase A24A domain protein [Geobacillus sp. WCH70]
Length = 248
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 54/157 (34%), Gaps = 16/157 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
V L+ +SD+ MIP++V +V FLL + AL
Sbjct: 95 ELIVCWTLISLLMIIFVSDVRYMMIPDKVLLVFAAIFLLERLFIPFIPWRDALVGAAAGF 154
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + + MGGGD+KL GW L+F F I + + +
Sbjct: 155 LLLFLIAVISKGGMGGGDIKLFALLGFVLGWKTVLLAFFFSTFYGTVIGLIGMALGK--- 211
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ +P+G AI +G L +Y
Sbjct: 212 -------------VRRREPMPFGPAIVLGSLTAYFFG 235
>gi|83749808|ref|ZP_00946780.1| PilD, Type 4 prepilin peptidase [Ralstonia solanacearum UW551]
gi|207744385|ref|YP_002260777.1| type 4 prepilin peptidase bifunctionnal: leader peptidase and
n-methyltransferase protein [Ralstonia solanacearum
IPO1609]
gi|83723519|gb|EAP70725.1| PilD, Type 4 prepilin peptidase [Ralstonia solanacearum UW551]
gi|206595790|emb|CAQ62717.1| type 4 prepilin peptidase bifunctionnal: leader peptidase and
n-methyltransferase protein [Ralstonia solanacearum
IPO1609]
Length = 293
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 22/166 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + + L+ + D + ++P+ V+ +L LL F + + + G +
Sbjct: 135 AVASAVLLWFLIAGTMIDADTQLLPDAVTQPLLWLGLLVNLFDMFARLPDAVIGAMAGYL 194
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+ + WFGW + + +++G + +
Sbjct: 195 FLWAIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQ-ALPLLILLSSVVGLVFGAARIA- 252
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + +G I+ G+I+
Sbjct: 253 ---------------RGAESDSPFSFGPFIAGAGVIALLAGPQLVA 283
>gi|17223823|gb|AAL10690.1| prepilin peptidase [Escherichia coli ETEC H10407]
Length = 269
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 IAFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|319789518|ref|YP_004151151.1| Prepilin peptidase [Thermovibrio ammonificans HB-1]
gi|317114020|gb|ADU96510.1| Prepilin peptidase [Thermovibrio ammonificans HB-1]
Length = 255
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 20/134 (14%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC----FCFFAF 78
A DL + +P ++S L + L + + + L G V + + F
Sbjct: 113 AFIDLDTMEVPVKLSYFALLAGLFLSIPASIKFVDSMLGASFGAGVILFIIETYYVFTGK 172
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
MG GD ++ + GW L+ LFF ++ G +L V ++ +R
Sbjct: 173 EGMGYGDANIMAVIGAFLGWKKVLLT-LFFASLTGAVLGVTLMALRKS------------ 219
Query: 139 KSFLMKNKIPYGIA 152
+ +P+G
Sbjct: 220 ---SKEQPLPFGPF 230
>gi|326630079|gb|EGE36422.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 197
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R + +L LL L + G
Sbjct: 45 VALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAG 104
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L S W W L + G V +L
Sbjct: 105 YGGFALIYWGYRLRYQKEGLGYGDVKYLASLGAWHCWETLPLLVFLAAMLACGGFGVALL 164
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 165 VRGKSALI---------------NPLPFGPWLAVAGFIT 188
>gi|229543678|ref|ZP_04432738.1| Prepilin peptidase [Bacillus coagulans 36D1]
gi|229328098|gb|EEN93773.1| Prepilin peptidase [Bacillus coagulans 36D1]
Length = 253
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 16/168 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ ++ LV +SDL +IP++V + A V
Sbjct: 99 EFLLAVLFISLLVIITVSDLAYMLIPDKVLFPFAAAIAAVRLFHPASPWWSAWLGAVFGF 158
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ FF MGGGD+KL + G +FL+F + +
Sbjct: 159 CLLYLIAFFTKGAMGGGDIKLFFVIGLVLGIEKTFLAFFLACFFGALYGVGLMAAGK--- 215
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
F + +P+G I++G L +Y + +S
Sbjct: 216 -------------FKKRKPVPFGPFIAIGALAAYFFGNSLIGMYLRIS 250
>gi|209920439|ref|YP_002294523.1| prepilin peptidase [Escherichia coli SE11]
gi|209913698|dbj|BAG78772.1| prepilin peptidase [Escherichia coli SE11]
gi|324018094|gb|EGB87313.1| bacterial Peptidase A24 protein [Escherichia coli MS 117-3]
Length = 269
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|258593733|emb|CBE70074.1| Type 4 prepilin-like proteins leader peptide processing enzyme
[NC10 bacterium 'Dutch sediment']
Length = 249
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-----LIALHLLVGLIVFIICFCFF 76
DL +IP+ +S+ + L+ + L + + +V + F
Sbjct: 106 ITFIDLDHGIIPHILSLPGIPIGLVASLLTFDPPPFEAATGALVGAGLVYLVAVYAEVAF 165
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
MGGGDV LL+ + GW +SF I G LS+ ++ R
Sbjct: 166 QQESMGGGDVNLLSMIGAFLGWRLMLVSFGV-AVIAGACLSLALIASR------------ 212
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K++IP+G +++G +++ +GL
Sbjct: 213 ---VLSRKDRIPFGPFLALGAVVALFVGDEVIDWYLGL 247
>gi|301063974|ref|ZP_07204439.1| putative type IV prepilin leader peptidase [delta proteobacterium
NaphS2]
gi|300441885|gb|EFK06185.1| putative type IV prepilin leader peptidase [delta proteobacterium
NaphS2]
Length = 258
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVG 65
+ +F++ L+ D ++P+ +++ + + L +F G+ + + L G
Sbjct: 100 LQYLLFMLFSGTLLILGFIDFDHKILPDVLTLPGILAGWLVSFFPGGISWVDSLIGLAAG 159
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + +GGGD+KLL W GW S + ++ G ++ +
Sbjct: 160 GGSLYLVAAVYERITGREGLGGGDIKLLAMIGAWLGW-MSLPLIVLMSSLSGAVIGSAFI 218
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ +IP+G +SMG L + L
Sbjct: 219 LSGGRGA---------------RTQIPFGPFLSMGALAYLFFGREISLWYFDL 256
>gi|300824051|ref|ZP_07104172.1| bacterial Peptidase A24 protein [Escherichia coli MS 119-7]
gi|331679037|ref|ZP_08379709.1| leader peptidase PppA [Escherichia coli H591]
gi|300523441|gb|EFK44510.1| bacterial Peptidase A24 protein [Escherichia coli MS 119-7]
gi|331073102|gb|EGI44425.1| leader peptidase PppA [Escherichia coli H591]
Length = 269
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V I
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVII-- 242
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+P+G +S+GG+ + LF
Sbjct: 243 ------------------KKGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|83590393|ref|YP_430402.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Moorella thermoacetica ATCC 39073]
gi|83573307|gb|ABC19859.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Moorella thermoacetica ATCC 39073]
Length = 247
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 16/165 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+L LV A+ DL +IP+ + + +L + L AL V
Sbjct: 96 LVKYLFLGAVLVAASFIDLEHYLIPDSLVVTGACGGILFSLLARDVGFRAALGGSVAAAG 155
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F++ + MGGGDVKL ++ GW + L+ + G +++
Sbjct: 156 FLLLVAVISNGGMGGGDVKLAGMVGLFLGWPLASLALFLSLVTGGLAGVCLLVSGLKK-- 213
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ +P+ I++GGL++ +G
Sbjct: 214 --------------REDPLPFAPFIAIGGLLALFFGEKMLHWYLG 244
>gi|297529211|ref|YP_003670486.1| prepilin peptidase [Geobacillus sp. C56-T3]
gi|297252463|gb|ADI25909.1| Prepilin peptidase [Geobacillus sp. C56-T3]
Length = 248
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 18/167 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
V +SDL +IP+RV +V G FL+ ++ + + L VG
Sbjct: 97 LVVAWTLISLFAIIVVSDLRYMLIPDRVLLVFAGLFLVERLVIPFLPWADMLLGAAVGFS 156
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + MGGGDVKL GW L+F I V + R
Sbjct: 157 LLWLIAVLSK-GGMGGGDVKLFAVLGFVLGWKMVLLAFFLATLYGTVIGLVGMALGR--- 212
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+ AI++G L ++ A + L
Sbjct: 213 -------------VRRGKPMPFAPAIALGALTAFFFGEAIVRAYISL 246
>gi|296313614|ref|ZP_06863555.1| type IV prepilin leader peptidase [Neisseria polysaccharea ATCC
43768]
gi|296839852|gb|EFH23790.1| type IV prepilin leader peptidase [Neisseria polysaccharea ATCC
43768]
Length = 286
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 59/167 (35%), Gaps = 25/167 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 134 LVLTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSLWL 193
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KL+ + W G + + +F +++G + ++ + +
Sbjct: 194 LCAVYKLLTGKTGMGNGDFKLIAALGAWLGIS-ALPVLIFVSSLIGLVAAIVMRVAK--- 249
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G+A+++ G I + + A+
Sbjct: 250 ----------------GQHFAFGLALTVSGWIIFTANDSVWRAVNWW 280
>gi|317494344|ref|ZP_07952758.1| type IV leader peptidase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917594|gb|EFV38939.1| type IV leader peptidase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 237
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 22/167 (13%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIAL 60
S + + + L ++ DL ++P+ +++ L LL +
Sbjct: 84 TSSDFTKLPLIWLISWFLTTLSIIDLRHYLLPDILTLPFLWLGLLYNAYSHTVRPSDAIA 143
Query: 61 HLLVGLIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+G + + F +G GD KLL + W G + + ++ G +
Sbjct: 144 GAAIGYLSIWLLFWIVKLRMHKHGIGLGDAKLLAALGAWTG-KDNVTWICLWASLGGIVW 202
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
S + +P+G +++ G + D
Sbjct: 203 WALRTIY----------------SNDKNHPLPFGPCLAIPGWVVIAD 233
>gi|218555539|ref|YP_002388452.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli IAI1]
gi|218696676|ref|YP_002404343.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli 55989]
gi|218353408|emb|CAU99461.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli 55989]
gi|218362307|emb|CAQ99928.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli IAI1]
Length = 269
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASIIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|293449312|ref|ZP_06663733.1| leader peptidase pppA [Escherichia coli B088]
gi|291322402|gb|EFE61831.1| leader peptidase pppA [Escherichia coli B088]
gi|323946654|gb|EGB42676.1| bacterial Peptidase A24 domain-containing protein [Escherichia coli
H120]
Length = 269
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I ++
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAII--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|261363882|ref|ZP_05976765.1| type IV prepilin leader peptidase [Neisseria mucosa ATCC 25996]
gi|288567879|gb|EFC89439.1| type IV prepilin leader peptidase [Neisseria mucosa ATCC 25996]
Length = 287
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 25/160 (15%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ + LI L+ D + +P+ +++ ++ LL + + L + G
Sbjct: 129 MAAFGGLILTAILIALTFIDADTQYLPDSLTLPLIWLGLLFNLNGTFVPLKSAVLGAVFG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + MG GD KLL + W G +F A++G + ++
Sbjct: 189 YMSLWLLCFIYKLLTGKIGMGNGDFKLLAALGAWLGV-GILPVLVFMAALIGLVGAII-- 245
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+G ++++ G I
Sbjct: 246 -----------------GRIAKGQYFAFGPSLAIAGWIIL 268
>gi|191169100|ref|ZP_03030861.1| leader peptidase PppA [Escherichia coli B7A]
gi|260869727|ref|YP_003236129.1| bifunctional prepilin leader peptidase/methylase [Escherichia coli
O111:H- str. 11128]
gi|300905912|ref|ZP_07123644.1| bacterial Peptidase A24 protein [Escherichia coli MS 84-1]
gi|301304142|ref|ZP_07210258.1| bacterial Peptidase A24 protein [Escherichia coli MS 124-1]
gi|307310400|ref|ZP_07590048.1| Prepilin peptidase [Escherichia coli W]
gi|309794072|ref|ZP_07688497.1| bacterial Peptidase A24 protein [Escherichia coli MS 145-7]
gi|18139870|gb|AAL60181.1|AF426313_1 putative prepilin peptidase A [Escherichia coli]
gi|190900852|gb|EDV60640.1| leader peptidase PppA [Escherichia coli B7A]
gi|257766083|dbj|BAI37578.1| bifunctional prepilin leader peptidase/methylase [Escherichia coli
O111:H- str. 11128]
gi|300402265|gb|EFJ85803.1| bacterial Peptidase A24 protein [Escherichia coli MS 84-1]
gi|300840555|gb|EFK68315.1| bacterial Peptidase A24 protein [Escherichia coli MS 124-1]
gi|306909295|gb|EFN39790.1| Prepilin peptidase [Escherichia coli W]
gi|308122479|gb|EFO59741.1| bacterial Peptidase A24 protein [Escherichia coli MS 145-7]
gi|315062285|gb|ADT76612.1| type II secretion system leader peptidase [Escherichia coli W]
gi|315253335|gb|EFU33303.1| bacterial Peptidase A24 protein [Escherichia coli MS 85-1]
gi|323178673|gb|EFZ64249.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli 1180]
gi|323377131|gb|ADX49399.1| peptidase A24A domain protein [Escherichia coli KO11]
Length = 269
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 IAFYSLRWIAGVVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|320656349|gb|EFX24256.1| putative prepilin peptidase A [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320661720|gb|EFX29128.1| putative prepilin peptidase A [Escherichia coli O55:H7 str. USDA
5905]
gi|320666870|gb|EFX33846.1| putative prepilin peptidase A [Escherichia coli O157:H7 str.
LSU-61]
Length = 269
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASIIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|258620022|ref|ZP_05715062.1| Type 4 prepilin-like protein leader peptide-processing enzyme
[Vibrio mimicus VM573]
gi|258587755|gb|EEW12464.1| Type 4 prepilin-like protein leader peptide-processing enzyme
[Vibrio mimicus VM573]
Length = 533
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 23/161 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
+ S V L F L + D S ++PN ++ + + + E +
Sbjct: 383 IDSFVLLGLYFILFNLFVIDFKSMLLPNLLTYPIFMLAFIYVQQNPALTVESSIMGGFAA 442
Query: 66 LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
I+ + ++MG GD+KL T+ G FL + S +
Sbjct: 443 FIISYVSNVIVRFFKKIDVMGAGDIKLYTALGTLIGVEFVPYLFLLSSIVAFIHWSFARV 502
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ R IP G +I + +I +
Sbjct: 503 SCRYCLY------------------IPLGPSIIISFVIVFF 525
>gi|94263266|ref|ZP_01287082.1| Prepilin peptidase [delta proteobacterium MLMS-1]
gi|93456349|gb|EAT06473.1| Prepilin peptidase [delta proteobacterium MLMS-1]
Length = 270
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--- 63
V V+ I L+ DL +IP+ +S+ + A L G A +
Sbjct: 111 VQYPVYFIFSAALLAIFFIDLDHQLIPDVISLPGIALGFAAALLPGGIGWQAAGLGILLG 170
Query: 64 --VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + + MGGGD+KLL + GW + + ++LG ++ V +
Sbjct: 171 GGSFYLVALGYYLITRREGMGGGDIKLLAMLGAFLGWQ-ALPFIILASSLLGLVVGVGAM 229
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ ++ IP+G + + +
Sbjct: 230 VRQGRGG---------------RSVIPFGPFLVIAAWL 252
>gi|293395640|ref|ZP_06639923.1| prepilin peptidase [Serratia odorifera DSM 4582]
gi|291421959|gb|EFE95205.1| prepilin peptidase [Serratia odorifera DSM 4582]
Length = 234
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 21/161 (13%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIV 68
V + L+ A D + +P+ +++ +L + LL + L + G ++
Sbjct: 88 LVLMAMATVLIALAFIDCRTLWLPDSLTLPLLWAGLLVNLHGALVPLADSVLGAVAGYLL 147
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ +G GD KLL + W GW L +
Sbjct: 148 LWGTNRLYVIYRQRQGIGQGDFKLLAALGAWGGWPLLPAMLLLASLCALAVWL------- 200
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ + +P+G +++ G ++ S
Sbjct: 201 ---------PRSGAQRSSRQTPMPFGCFLALAGGLTLALSA 232
>gi|193067292|ref|ZP_03048260.1| leader peptidase PppA [Escherichia coli E110019]
gi|192959249|gb|EDV89684.1| leader peptidase PppA [Escherichia coli E110019]
Length = 269
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASIIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I ++
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAII--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|182418647|ref|ZP_02949924.1| bacterial Peptidase A24 N- domain family [Clostridium butyricum
5521]
gi|237668589|ref|ZP_04528573.1| bacterial Peptidase A24 N-terminal domain family protein
[Clostridium butyricum E4 str. BoNT E BL5262]
gi|182377509|gb|EDT75063.1| bacterial Peptidase A24 N- domain family [Clostridium butyricum
5521]
gi|237656937|gb|EEP54493.1| bacterial Peptidase A24 N-terminal domain family protein
[Clostridium butyricum E4 str. BoNT E BL5262]
Length = 250
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 18/166 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
MK M+++ F I L+ ++ D + + ++ ++ + Y +
Sbjct: 89 MKYGFMIYTVEFCILISLLIVISMIDYNTQEVYTSTTVFGAIVGVIFILINKFVYGENVM 148
Query: 61 HLLVGL--IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+LL+G II + MG GD+++ ++ G L+ + + G + V
Sbjct: 149 NLLMGGLTGAAIIGAIVYLTKGMGEGDIEIAGVCGLFLGVKQIILALFLAIMLGGAVGVV 208
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IL +K+KI +G I++G LI+
Sbjct: 209 VILL----------------NLKNIKDKIAFGPFIAIGTLIAILYG 238
>gi|170680076|ref|YP_001745230.1| leader peptidase PppA [Escherichia coli SMS-3-5]
gi|188492091|ref|ZP_02999361.1| prepilin peptidase PppA [Escherichia coli 53638]
gi|300923619|ref|ZP_07139648.1| bacterial Peptidase A24 protein [Escherichia coli MS 182-1]
gi|170517794|gb|ACB15972.1| leader peptidase PppA [Escherichia coli SMS-3-5]
gi|188487290|gb|EDU62393.1| prepilin peptidase PppA [Escherichia coli 53638]
gi|300420136|gb|EFK03447.1| bacterial Peptidase A24 protein [Escherichia coli MS 182-1]
Length = 269
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLSAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 IAFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|307294435|ref|ZP_07574279.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
gi|306880586|gb|EFN11803.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
Length = 176
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-LLV 64
M+ V L L+ AA+ D+ I N +L L A++ +E V
Sbjct: 1 MMKDVVLLAVSLVLIAAAVEDMARLRISN--IFPLLVIGLYAAWVAAAGWENDIWRNGTV 58
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
L +F + FA MGGGD+KL+++ A+WF W ++ + GG+L++ ++ R
Sbjct: 59 FLGMFALGCGLFALRWMGGGDIKLMSTCALWFDWQGVVPWLVYVT-VGGGVLALVLMIGR 117
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ G + F K IPYG+AI++G +++
Sbjct: 118 RLVPQAVREGSSIA-LFDKKGPIPYGVAIALGTIMAL 153
>gi|94272432|ref|ZP_01292123.1| Prepilin peptidase [delta proteobacterium MLMS-1]
gi|93450134|gb|EAT01466.1| Prepilin peptidase [delta proteobacterium MLMS-1]
Length = 270
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--- 63
V V+ I L+ DL +IP+ +S+ + A L G A +
Sbjct: 111 VQYPVYFIFSAALLAIFFIDLDHQLIPDVISLPGIALGFTAALLPGGIGWQAAGLGILLG 170
Query: 64 --VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + + MGGGD+KLL + GW + + ++LG ++ V +
Sbjct: 171 GGSFYLVALGYYLITRREGMGGGDIKLLAMLGAFLGWQ-ALPFIILASSLLGLVVGVGAM 229
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ ++ IP+G + + +
Sbjct: 230 VRQGRGG---------------RSVIPFGPFLVIAAWL 252
>gi|225851460|ref|YP_002731694.1| leader peptidase PppA [Persephonella marina EX-H1]
gi|225646451|gb|ACO04637.1| leader peptidase PppA [Persephonella marina EX-H1]
Length = 259
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 51/170 (30%), Gaps = 19/170 (11%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIA 59
+K + + ++ D+ +IP+++++ S ++ F
Sbjct: 95 IKTGLSLDFIFVFLFLSLMIVITFIDIDFRIIPDQLNLAGFLSGIIYTYFRNDFSMIDAF 154
Query: 60 LHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L G + F+ +G GDVKL+ + GW + + I +
Sbjct: 155 TGALTGAGILFGIAYFYLKVRGIEGLGMGDVKLMAFVGSYLGWFGALFTIFVGSFIGAVV 214
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ R +IP+G +++ +
Sbjct: 215 GIIGAYISRSEDKGKF--------------EIPFGPFLALSATVYLFFGE 250
>gi|323173793|gb|EFZ59422.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli LT-68]
Length = 269
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 IAFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|206602214|gb|EDZ38696.1| Putative type IV prepilin peptidase [Leptospirillum sp. Group II
'5-way CG']
Length = 263
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 11/167 (6%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V + +L DL +P+ ++ S LL + ++ L G I
Sbjct: 104 IVLATFFSFALPLSLIDLRHRRLPHSLTWTAGFSGLLLGWYGPENFFYPIWGFLAGFITL 163
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ MG GD + S + G T + + ++
Sbjct: 164 GLVSIL-HPKGMGMGDAFWIGSIGTFVGATGVVETLFLSSFFAILSILPLFFVKTPDSSG 222
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+P K +P+G +S+G ++ + AL ++
Sbjct: 223 VP----------WYKTSLPFGPYLSLGAMLVLINPGHMIEALQSAAS 259
>gi|267995651|gb|ACY90536.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|323131800|gb|ADX19230.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
Length = 197
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R + +L LL L + G
Sbjct: 45 VALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAG 104
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L + W W L + G V +L
Sbjct: 105 YGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALL 164
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 165 VRGKSALI---------------NPLPFGPWLAVAGFIT 188
>gi|258405294|ref|YP_003198036.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM
5692]
gi|257797521|gb|ACV68458.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM
5692]
Length = 189
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 16/166 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L+ L+FAAL DL IPN ++ + L+ +A + L+
Sbjct: 7 EFILPLLLFPALIFAALYDLRYQKIPNLLNFPLALFALIYH-TAFTGLNGLAFGVTGMLL 65
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + F MG GD KL+ + G F+S LF G + +L R
Sbjct: 66 GTALFLPPYIFGGMGAGDTKLMGAIGAVLGAKGVFVSALFTAIFGGLYAVLLLLVHRGYA 125
Query: 128 NHIPIFGMFVPKSFLMKN---------------KIPYGIAISMGGL 158
+ K+ ++ ++ YGIAI++G L
Sbjct: 126 RTLMQRTWEGLKTLVLVRRYIPDSSPQSTNTSPRLCYGIAIALGTL 171
>gi|193062186|ref|ZP_03043282.1| leader peptidase PppA [Escherichia coli E22]
gi|192932406|gb|EDV85004.1| leader peptidase PppA [Escherichia coli E22]
Length = 269
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASIIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I ++
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAII--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|326795296|ref|YP_004313116.1| prepilin peptidase [Marinomonas mediterranea MMB-1]
gi|326546060|gb|ADZ91280.1| Prepilin peptidase [Marinomonas mediterranea MMB-1]
Length = 256
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 24/167 (14%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ S + A + L AA+ D+ + IP+ S++++ S + L L
Sbjct: 106 LLTSSPLQFASLFLIFLSLFIAAVIDIENKWIPDECSLMIIASSFVALLLNAQPLADNVL 165
Query: 61 HLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
L+ G + F+ +G GD KLL + W G++ +F ++
Sbjct: 166 GLICGYALVYFLRLFYLHFRQIEAIGLGDAKLLAAIGAWLGFSNLPYVIMFAASLGMIGA 225
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ +IP+G + + + +
Sbjct: 226 LII--------------------RATRSTRIPFGPFLVISSISLFYY 252
>gi|77461043|ref|YP_350550.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Pseudomonas fluorescens Pf0-1]
gi|77385046|gb|ABA76559.1| type IV pilus prepilin peptidase PilD [Pseudomonas fluorescens
Pf0-1]
Length = 290
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 21/168 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + ++ + L+ +L D ++P+ + + +L L+ F L + ++G +
Sbjct: 132 ACLLIVLTWGLLAMSLIDTEHQLLPDVLVLPLLWLGLIVNSFELFVPLHDALWGAVLGYM 191
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F F + +G GD KLL W GW L+ L +++G +L V +L +
Sbjct: 192 ALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILL-SSLVGAVLGVILLKL 250
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
R IP+G +++ G I+
Sbjct: 251 RDQKTS---------------TPIPFGPYLAIAGWIALLWGGQITGFY 283
>gi|256019110|ref|ZP_05432975.1| prepilin peptidase [Shigella sp. D9]
gi|332280215|ref|ZP_08392628.1| conserved hypothetical protein [Shigella sp. D9]
gi|332102567|gb|EGJ05913.1| conserved hypothetical protein [Shigella sp. D9]
Length = 269
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASIIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 IAFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|299538329|ref|ZP_07051612.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Lysinibacillus fusiformis ZC1]
gi|298725916|gb|EFI66508.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Lysinibacillus fusiformis ZC1]
Length = 250
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ V + LV +SDL +IP++V + L ++ L + + + +VG
Sbjct: 98 IELIVAFLFISLLVIIVVSDLAYMLIPDKVLVFFLPVLVIGRVLSPLTPWWDSLVGAVVG 157
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ I + MGGGD+KL + G + L+ I G I+ + +L+
Sbjct: 158 FGILYIIAVL-SNGGMGGGDIKLFFLIGLVLGTIDTLLTLFLAAVI-GMIVGITMLSKNK 215
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
K IP+G +I++ +I +
Sbjct: 216 QG---------------RKTPIPFGPSIALAAVIVFFYGDRLI 243
>gi|302390457|ref|YP_003826278.1| type 4 prepilin peptidase 1 [Thermosediminibacter oceani DSM 16646]
gi|302201085|gb|ADL08655.1| type 4 prepilin peptidase 1 [Thermosediminibacter oceani DSM 16646]
Length = 251
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 16/157 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+L L+ AA DL +IP+R+ + + ++ F +L
Sbjct: 98 ALVKYLFLGAVLIAAAFIDLEHYLIPDRLVLAGFAAAIVLGFAARDVGVWSSLAGSAAGA 157
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F+ F+ MG GDVKL ++ GW + L+ V G + +V +L
Sbjct: 158 GFLFAIVVFSKGGMGCGDVKLAAVAGLFIGWPLAALALFLAVITGGLVAAVLLLF----- 212
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ K+ IP+G I+ G L +
Sbjct: 213 -----------RLKGPKDAIPFGPFIAAGTLAAALWG 238
>gi|320201877|gb|EFW76452.1| leader peptidase PppA [Escherichia coli EC4100B]
Length = 257
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 114 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 173
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 174 IAFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 229
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 230 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 257
>gi|10567798|gb|AAG18589.1|AF297457_4 pilin biogenesis protein PilD [Pseudomonas fluorescens]
Length = 290
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 21/166 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A+ ++ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 132 HAAMVMVLTWGLLAMSLIDAEHQLLPDTLVLPLLWLGLIINSFGLFVSLNQAMWGAVAGY 191
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L + I ++ +
Sbjct: 192 LALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVGAVIGAIVLRL 251
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ +IP+G +++ G I+
Sbjct: 252 ----------------RDAPGSTQIPFGPYLAIAGWIALLWGGQIT 281
>gi|33603409|ref|NP_890969.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Bordetella bronchiseptica RB50]
gi|33577533|emb|CAE34798.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Bordetella bronchiseptica RB50]
Length = 279
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 21/161 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + L+ A DL +++P+ V++ ++ + LL + L L + G +
Sbjct: 126 ALAAMGLTGALLALAWIDLEHSLLPDAVTLPLIWAGLLVNLDGALAPLPLAVLGAVAGYL 185
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F FF + MG GD KL+ + W G + L ++ G ++ +
Sbjct: 186 FLWVIFHFFRLLTGRDGMGHGDFKLMAALGAWLGL-GALPWLLLGASLAGVLVGWSLRLA 244
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ +P+G +++GG++ +
Sbjct: 245 GRVG---------------RGQPLPFGPYLALGGILMLLAA 270
>gi|324119777|gb|EGC13657.1| peptidase A24 domain-containing protein [Escherichia coli E1167]
Length = 269
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASIIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|161506004|ref|YP_001573116.1| hypothetical protein SARI_04185 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867351|gb|ABX23974.1| hypothetical protein SARI_04185 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 197
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVF 69
+ + + D + ++P+R + +L LL L + G F
Sbjct: 49 FLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYSGF 108
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W W L + G V +L
Sbjct: 109 ALIYWSYRLRYQKEGLGYGDVKYLAALGAWHCWESLPLLVFLAAMLACGGFGVALLVRGK 168
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 169 SALI---------------NPLPFGPWLAVAGFIT 188
>gi|154250687|ref|YP_001411511.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1]
gi|154154637|gb|ABS61854.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1]
Length = 187
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
S ++ + ++ P ++F AL DL + IPN +SI ++ F L +G+ + IALH+
Sbjct: 18 SSVMNMLLLVVFPLAMIFGALWDLTTMTIPNLLSIALVAMFALLVPFVGLALQDIALHVA 77
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
GL++ + FA +GGGD K +++ A+W GW+ +L +I GG+L++ +L
Sbjct: 78 AGLVMLALGMGLFALGWIGGGDAKFVSAIALWIGWSELLG-YLLLASIFGGVLTLLLLGF 136
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
R + + ++ + K+ IPYG+A++ L+ + + FK A
Sbjct: 137 RKMPLPSFMHREWLLRLHDRKSGIPYGVALAAAALVMFERTVWFKFAA 184
>gi|16124439|ref|NP_419003.1| prepilin peptidase [Caulobacter crescentus CB15]
gi|13421305|gb|AAK22171.1| prepilin peptidase [Caulobacter crescentus CB15]
Length = 269
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLI 67
+ + + L+ A D +P+R+++ ++ +G + + VG
Sbjct: 117 ILLTALMGWSLLLIATIDTEHLWLPDRLTLPFGALGVIATLAIGEVPVWTPLVGAAVGFG 176
Query: 68 VFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F+ MGGGD +LL + W GW S L + + G +++ V
Sbjct: 177 GLALIAWLYKTVRGFDGMGGGDPRLLGAIGAWVGWQG-LPSVLVWACVAGLSVAIAQTLV 235
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
R F ++P+G +++G +++ L
Sbjct: 236 RRR--------------FSGDQQLPFGAFLAIGAWLTWLWGPL 264
>gi|187930140|ref|YP_001900627.1| Prepilin peptidase [Ralstonia pickettii 12J]
gi|187727030|gb|ACD28195.1| Prepilin peptidase [Ralstonia pickettii 12J]
Length = 293
Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 55/164 (33%), Gaps = 22/164 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + + L+ + D + ++P+ ++ +L L + + + G +
Sbjct: 135 AVASAVLLWFLIAGTMIDADTQLLPDAITQPLLWLGLGVNLFGMFAHLQDAVVGAMAGYL 194
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+ + WFGW ++ +L +
Sbjct: 195 FLWSIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQ-----------------ALPLLVL 237
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ + + + ++ +G I+ G+I+
Sbjct: 238 LSSVVGLVFGLVRIARGATSESPFSFGPFIAGAGVIALLAGPQL 281
>gi|83859355|ref|ZP_00952876.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633]
gi|83852802|gb|EAP90655.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633]
Length = 172
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 76/168 (45%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M+ M+ + L F ++ A D+ S IPN V ++ ++L A LG+ +
Sbjct: 1 MRAPAMISNIALLGFAFLMLCAVWYDVRSFTIPNWVPGALIAGWVLAAPFLGLSWMDAGF 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
LL GL V + +A +GGGDVKLL + A+WFGW L VA G + + +
Sbjct: 61 SLLTGLGVLALGMALWAPGWVGGGDVKLLAAGALWFGWPDGLAFVLIAVAAGGVLAVILV 120
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ +M + +PY IAI+ G L+ P + +F
Sbjct: 121 ILRQMAHLLPISSDRLGSTALAQGAPVPYAIAIAAGALLVLPQAQMFA 168
>gi|241760205|ref|ZP_04758301.1| bacterial Peptidase A24 domain protein [Neisseria flavescens SK114]
gi|241319316|gb|EER55781.1| bacterial Peptidase A24 domain protein [Neisseria flavescens SK114]
Length = 295
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 25/154 (16%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFII 71
LI L+ D + +P+ ++ ++ LL + L + G +
Sbjct: 142 LILTAILIALTFIDADTQYLPDSLTQPLIWIGLLFNLNDTFVPLHSAVLGAIAGYMSLYT 201
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KLL + W G +F A++G + ++ +
Sbjct: 202 LCAVYKLLTGKIGMGNGDFKLLAALGAWLGV-GILPVLIFMAALVGLVGALIARVGK--- 257
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+G ++++ G I
Sbjct: 258 ----------------GQYFAFGPSLAVAGWIIL 275
>gi|298155837|ref|YP_003717663.1| putative transmembrane pilus biosynthesis protein [Escherichia coli
ETEC 1392/75]
gi|156121674|gb|ABU50050.1| LngP [Escherichia coli]
gi|297374434|emb|CBL93496.1| putative transmembrane pilus biosynthesis protein [Escherichia coli
ETEC 1392/75]
Length = 284
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 16/164 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
+ L L+ + DL ++P+ + +L + LL A + + + +
Sbjct: 113 LVVISVLFLFSVLLCLTVIDLDHLLLPDSLVFTLLWTGLLAATFEISPVHLKDAVIGVCG 172
Query: 65 GLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ + F +GGGDVKL+++ + W GW +F I +F
Sbjct: 173 TWLFLTVITYLFTVIRNKEGLGGGDVKLISALSAWVGWYYIPALLVFSSVIG---FILFF 229
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ R + +P+G AIS+ Y S
Sbjct: 230 IAKRKMEFSSDTERTLYYV-------VPFGPAISLTAFFIYLSS 266
>gi|157162441|ref|YP_001459759.1| type IV prepilin peptidase family protein [Escherichia coli HS]
gi|157068121|gb|ABV07376.1| type IV prepilin peptidase family protein [Escherichia coli HS]
Length = 269
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLSAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 IAFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|311278339|ref|YP_003940570.1| Prepilin peptidase [Enterobacter cloacae SCF1]
gi|308747534|gb|ADO47286.1| Prepilin peptidase [Enterobacter cloacae SCF1]
Length = 273
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 16/166 (9%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIAL 60
++ + L L+ D+ ++P+ + +L L+ A + L
Sbjct: 109 GQNLLSTLPVLFLFAVLLCLVAIDVDHLLLPDSLVFTLLWGGLVFAVGGLTPVSLRDAVL 168
Query: 61 HLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
++ + F MG GD+KL + W GW + + +
Sbjct: 169 GAVITWLFLSAVVLIFSVVRKKEGMGAGDIKLYGALGGWLGWQQMPALLVLSSVLGMLMF 228
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + IP+G AI+ GG Y
Sbjct: 229 MLL----------KKRRVSDIDTDGHIYQVIPFGPAIATGGFSLYL 264
>gi|323489980|ref|ZP_08095201.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Planococcus donghaensis MPA1U2]
gi|323396276|gb|EGA89101.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Planococcus donghaensis MPA1U2]
Length = 251
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 16/158 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
V ++ LV +SD+ +IP++V + + F++ +D +L
Sbjct: 99 ELIVAILFVSLLVIITVSDIAYMLIPDKVLLPFAVVLIGLRFVIPLDPWWNSLLGAAVGF 158
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + MGGGD+KL + G + ++ F I + + + +
Sbjct: 159 SLLFLIAIVSKGGMGGGDIKLFFVIGLVLGLGGTLMTLFFASFIGAVVGIIQLRITKK-- 216
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
K+ IP+G +I+ +I Y
Sbjct: 217 --------------GRKSPIPFGPSIAAAAIIVYFWGE 240
>gi|167041756|gb|ABZ06499.1| putative bacterial peptidase A24 N-terminal domain protein
[uncultured marine microorganism HF4000_010L19]
Length = 262
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 26/164 (15%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI------ALHLLVGLIVFIICFC 74
DL +IP+ ++ ++ L FL ++ I + + G I
Sbjct: 115 TVFFIDLKHFIIPDILNYGIIVIAFLKNFLPDLNLSFIQDIKLSLMGGIAGFFSIWIIIY 174
Query: 75 FFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ MG GD KL+ + FGW + ++
Sbjct: 175 LYKTFKKKEGMGLGDAKLMAGVGLLFGWQSIPFVLFLAAVLGLLMVM------------- 221
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K +K+++P+G I G+I + + +G+
Sbjct: 222 ---PSLYEKKKSLKSQVPFGPYIITAGVIYFLYGDVLYKMALGI 262
>gi|260893560|ref|YP_003239657.1| peptidase A24A domain protein [Ammonifex degensii KC4]
gi|260865701|gb|ACX52807.1| peptidase A24A domain protein [Ammonifex degensii KC4]
Length = 250
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 16/166 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + CL+ A+ DL +IPNR+ +V + L L AL
Sbjct: 98 ALKYYFLLACLLVASFIDLEHCLIPNRLVLVAFLGGVPLGLLARDVGLLSALLGAGAAGG 157
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F++ + MGGGD+KL T ++ GW S L + G V +LT R
Sbjct: 158 FLLLLALASRGGMGGGDIKLATVAGLFLGWPLSLLGTFLGCFVAGIWGIVLLLTRRK--- 214
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K+ IP+G +S+G LI+ L
Sbjct: 215 -------------GRKDHIPFGPFLSLGFLIALFWGREIWEWYASL 247
>gi|312110054|ref|YP_003988370.1| prepilin peptidase [Geobacillus sp. Y4.1MC1]
gi|311215155|gb|ADP73759.1| Prepilin peptidase [Geobacillus sp. Y4.1MC1]
Length = 248
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 16/157 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
V L+ +SD+ MIP++V +V FL + AL
Sbjct: 95 ELIVCWTLISLLMIIFVSDVRYMMIPDKVLLVFAVIFLFERLFIPFLPWRDALIGAAAGF 154
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + + MGGGD+KL GW L+F F I + + +
Sbjct: 155 LLLFLIAVISKGGMGGGDIKLFALLGFVLGWKTVLLAFFFSTIYGTAIGLIGMALGK--- 211
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ +P+G AI +G L +Y
Sbjct: 212 -------------VRRREPMPFGPAIVLGSLTAYFFG 235
>gi|294053953|ref|YP_003547611.1| peptidase A24A domain protein [Coraliomargarita akajimensis DSM
45221]
gi|293613286|gb|ADE53441.1| peptidase A24A domain protein [Coraliomargarita akajimensis DSM
45221]
Length = 311
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 65/199 (32%), Gaps = 29/199 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-------------- 52
+ + + ++ L+ + DL +IP+R SI + +L +F
Sbjct: 107 LVAVIGMLYIAFLICSTFIDLDHMIIPDRFSIGGMVIGVLLSFAFPALHAVEPTYMPLIA 166
Query: 53 ------MDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
+ + + ++ F MG GDVK + + GW + +
Sbjct: 167 HMKAGVQSIIGALIGAGLVYWISVLGEIVFRKPAMGEGDVKFVGFIGAFCGWQGAAFAMF 226
Query: 107 FFVAILGGILSVFILTVRMIT---------NHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
I +L +L R++ + M ++P+G +++ G
Sbjct: 227 GGAFIGSAVLLPLLLVQRLLGSSQEDSEDDGTAAPETDEDDEFVPMAGQVPFGPMLALAG 286
Query: 158 LISYPDSYLFKVALMGLSA 176
LI + F A A
Sbjct: 287 LIYFLGFSAFVDAYFAEVA 305
>gi|206891143|ref|YP_002249074.1| bacterial Peptidase A24 N-terminal domain family
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206743081|gb|ACI22138.1| bacterial Peptidase A24 N-terminal domain family
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 247
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 26/163 (15%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALHL 62
LI ++ + D+ +IP+++S+ ++ + + D++ + +
Sbjct: 97 LLFILIFISAMIVVSFIDIDFQIIPDQISVPLIFIGFIFSLFSHGYTGFVSDFKESLIGI 156
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+VG +I MGGGD+KL + + GW + L+ I + +
Sbjct: 157 VVGGGSLLIVSIISK-GGMGGGDIKLNAAVGAFLGWKAALLTIFIGSLIGSIVGIIIF-- 213
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
KIP+G +S+G LI
Sbjct: 214 -----------------KKTGNRKIPFGPFLSIGALICLFLGE 239
>gi|123443539|ref|YP_001007512.1| prepilin peptidase [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|122090500|emb|CAL13369.1| prepilin peptidase [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 277
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 22/158 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFII 71
++ + L+ D+ ++PN ++ +L LL + L + G + +
Sbjct: 130 ILLVWGLIVLVFIDIDCYLLPNCITQPLLWCGLLLNMYNAFLPLSFYVLGAVCGYLFLWL 189
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F + MG GD KL+ + WFG L +
Sbjct: 190 PNWIFKILKGIDGMGYGDFKLMAALGAWFGVAAVPFIILLSSLFGVVAYVII-------- 241
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
S + +G IS+ GL+
Sbjct: 242 ---------NKFSGEKVKYVAFGPYISLTGLVYLFWGE 270
>gi|167751238|ref|ZP_02423365.1| hypothetical protein EUBSIR_02224 [Eubacterium siraeum DSM 15702]
gi|167655745|gb|EDR99874.1| hypothetical protein EUBSIR_02224 [Eubacterium siraeum DSM 15702]
Length = 352
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIV 68
V ++ L+ + D+ IP +I + + T F M + V +
Sbjct: 111 VVAIVFFSLLIVLSCIDIDHMEIPYWCTISIAVLGIATFFTEPNMPWWEHFAGAAVIAVP 170
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
F I F MGGGDV+L+ ++ GW
Sbjct: 171 FAILALF---GGMGGGDVQLMAASGFVLGWKIVP 201
>gi|167564181|ref|ZP_02357097.1| type IV prepilin leader peptidase [Burkholderia oklahomensis EO147]
gi|167571330|ref|ZP_02364204.1| type IV prepilin leader peptidase [Burkholderia oklahomensis C6786]
Length = 303
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 149 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWDTFASLRTAVIGAIAGY 208
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW I+
Sbjct: 209 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQ----------------IVL 252
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 253 IAAVAGAAIGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 303
>gi|152974831|ref|YP_001374348.1| peptidase A24A domain-containing protein [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023583|gb|ABS21353.1| peptidase A24A domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 240
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
V LV L+DLF MIPN V + FL+ + + +L G I
Sbjct: 97 ELIVICTLFSLLVMITLTDLFYMMIPNAVLLSFSCIFLIEYMISPFIFW--LDSVLGGGI 154
Query: 68 VFIICFCFFAF--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+F + + N +GGGDVKLL+ G ++ L + L R
Sbjct: 155 IFCVLYILRMIYPNGLGGGDVKLLSLLGFVLGIKGILITLCIASCSSLCFLGICFLFKR- 213
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+++ +P+G I++G +
Sbjct: 214 ---------------MNIRDPLPFGPFIALGTI 231
>gi|251788930|ref|YP_003003651.1| Prepilin peptidase [Dickeya zeae Ech1591]
gi|247537551|gb|ACT06172.1| Prepilin peptidase [Dickeya zeae Ech1591]
Length = 283
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 5/130 (3%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFC 74
L+ A D + ++P+ +++ +L LL + E + + G + + +
Sbjct: 139 FGILLALAAIDARTQLLPDVMTLPLLWGGLLFNLADTFVPLEQAVVGAVAGYLSLWLIYW 198
Query: 75 FFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F +G GD KLL + W GW L ++ R+
Sbjct: 199 AFRLLSGREALGHGDFKLLAALGAWLGWQALPNLVLIASLTGLTATLLWRRIHRLNMQQP 258
Query: 131 PIFGMFVPKS 140
FG ++ S
Sbjct: 259 LAFGPWLAVS 268
>gi|281180006|dbj|BAI56336.1| prepilin peptidase [Escherichia coli SE15]
Length = 269
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLITASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|83718694|ref|YP_441682.1| type IV pilus prepilin peptidase PilD [Burkholderia thailandensis
E264]
gi|83652519|gb|ABC36582.1| type IV pilus prepilin peptidase PilD [Burkholderia thailandensis
E264]
Length = 351
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 197 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVVGAIAGY 256
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 257 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 300
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 301 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 351
>gi|310779614|ref|YP_003967947.1| peptidase A24A domain protein [Ilyobacter polytropus DSM 2926]
gi|309748937|gb|ADO83599.1| peptidase A24A domain protein [Ilyobacter polytropus DSM 2926]
Length = 245
Score = 67.6 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 21/165 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ +++A +I LV A+ D IP+R ++ +L +F G+ E +
Sbjct: 91 RYGMSIWTAELIIAASILVIASGIDWEHYYIPDRFTLGLLLLGYGFSFFNGVGIERSFMG 150
Query: 62 LLVGLIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGI 115
+F++ + F ++G GDVKL G+ F+ + G +
Sbjct: 151 SAAYGFLFVMIYGYGERLFKKEVLGFGDVKLAAGIGSIVGYLGFYRMHLFITTSFVAGAV 210
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
++++ + K ++P+G I+ GG+IS
Sbjct: 211 YGIYLIITKKK---------------DRKAEVPFGPFIAFGGIIS 240
>gi|206576910|ref|YP_002240378.1| pullulanase secretion protein PulO [Klebsiella pneumoniae 342]
gi|288937083|ref|YP_003441142.1| prepilin peptidase [Klebsiella variicola At-22]
gi|290512504|ref|ZP_06551870.1| general secretion pathway protein O [Klebsiella sp. 1_1_55]
gi|206565968|gb|ACI07744.1| pullulanase secretion protein PulO [Klebsiella pneumoniae 342]
gi|288891792|gb|ADC60110.1| Prepilin peptidase [Klebsiella variicola At-22]
gi|289774845|gb|EFD82847.1| general secretion pathway protein O [Klebsiella sp. 1_1_55]
Length = 266
Score = 67.6 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFIICFCFFAF----N 79
D + ++P+R+++ +L + LL + + + G + + F
Sbjct: 135 IDARTQLLPDRLTLPLLWAGLLFNLNEVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKE 194
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+G GD KLL + W GW L A + L R FG ++
Sbjct: 195 ALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQSLQQPLAFGPWLA 253
>gi|225077384|ref|ZP_03720583.1| hypothetical protein NEIFLAOT_02445 [Neisseria flavescens
NRL30031/H210]
gi|224951268|gb|EEG32477.1| hypothetical protein NEIFLAOT_02445 [Neisseria flavescens
NRL30031/H210]
Length = 295
Score = 67.6 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 25/154 (16%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFII 71
LI L+ D + +P+ ++ ++ LL + + G +
Sbjct: 142 LILTAILIALTFIDADTQYLPDSLTQPLIWIGLLFNLNDTFVSLHSAVWGAIAGYMSLYT 201
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KLL + W G +F A++G + ++
Sbjct: 202 LCAVYKLLTGKIGMGNGDFKLLAALGAWLGV-GILPVLVFMAALVGLVGALI-------- 252
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+G ++++ G I
Sbjct: 253 -----------ARVSKGQYFAFGPSLAVAGWIIL 275
>gi|291531694|emb|CBK97279.1| Type II secretory pathway, prepilin signal peptidase PulO and
related peptidases [Eubacterium siraeum 70/3]
Length = 352
Score = 67.6 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIV 68
V ++ L+ + D+ IP +I + + T F M + V +
Sbjct: 111 VVAIVFFSLLIVLSCIDIDHMEIPYWCTISIAVLGIATFFTEPNMPWWEHFAGAAVIAVP 170
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
F I F MGGGDV+L+ ++ GW
Sbjct: 171 FAILALF---GGMGGGDVQLMAASGFVLGWKIVP 201
>gi|187927690|ref|YP_001898177.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J]
gi|187724580|gb|ACD25745.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J]
Length = 181
Score = 67.6 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 16/181 (8%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M ++ ++ S + + + AA D IPN ++ + L +
Sbjct: 1 MNDATLLSSMIGPVAMGVALIAAAIDAQHRRIPNWLTFGAWLAALPLQVAVHGFGNGALE 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L I F+ M GDVKL+ + W G +F + I G +F
Sbjct: 61 WTCGWLTGLAIFLPFYLLRGMAAGDVKLMAAVGAWLGAFMAFEIAMATFVIGGIWALLFT 120
Query: 121 LTVRMITN----------------HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
L + + + +PYG+AI+ G + S
Sbjct: 121 LRHKRMAQLRRNLRDVLLTSGQVSREAGAPTPQADASWSVGTLPYGVAIAAGTIAVLFAS 180
Query: 165 Y 165
Sbjct: 181 A 181
>gi|83647944|ref|YP_436379.1| type II secretory pathway prepilin signal peptidase PulO and
related peptidase [Hahella chejuensis KCTC 2396]
gi|83635987|gb|ABC31954.1| Type II secretory pathway, prepilin signal peptidase PulO and
related peptidase [Hahella chejuensis KCTC 2396]
Length = 292
Score = 67.6 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 21/155 (13%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF----N 79
D + ++P+ +++ +L + LL + +VG + + F
Sbjct: 150 IDFDTQLLPDDLTLPLLWAGLLINIQGIFAPLSEAVIGAVVGYLALWSVYHLFRLLTGKE 209
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MG GD KLL + W GW L L + I I+ + N
Sbjct: 210 GMGFGDFKLLAALGAWLGWKMLPLIILLSSLVGAVIGIAMIIILGRDKNI---------- 259
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
IP+G +++ G I+ A +G+
Sbjct: 260 ------PIPFGPYLAIAGWIAMIWGNDIVSAYLGM 288
>gi|225848072|ref|YP_002728235.1| type IV prepilin leader peptidase [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643332|gb|ACN98382.1| type IV prepilin leader peptidase [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 267
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 24/183 (13%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL------LGMD 54
+K V ++ + D +IP+ ++ + L S + A +
Sbjct: 97 LKFGFSVDFVFAFYFLCSMIALSFIDFDFKIIPDEINYLGLLSGFVYAGMKSYQSSSFEP 156
Query: 55 YELIALHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+ LVG + + +G GDVKLL + GW + + F +
Sbjct: 157 LINAIIGALVGSGFLFLIAYLYLKFRNIEGLGMGDVKLLAFIGSYTGWFGALFTIFF-GS 215
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
ILG + S++ + N LMK +IP+G +++ G +
Sbjct: 216 ILGLLASLYFMKKEKDNN-------------LMKLEIPFGPFLALAGSVYLFFGEKIYNF 262
Query: 171 LMG 173
G
Sbjct: 263 YFG 265
>gi|104783623|ref|YP_610121.1| type IV pili prepilin peptidase PilD/XcpA [Pseudomonas entomophila
L48]
gi|95112610|emb|CAK17338.1| type IV pili prepilin peptidase PilD/XcpA [Pseudomonas entomophila
L48]
Length = 288
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 21/173 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
V + ++ + L+ +L D ++P+ + + +L L+ + + G
Sbjct: 129 VEALAVMLLTWGLIGLSLIDAEHQLLPDVLVLPLLWLGLVVNAFGLLVPLADAVWGAVAG 188
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL W GW L+ + ++G ++ + ++
Sbjct: 189 YLSLWAVYWVFKLVTGKEGMGFGDFKLLAMLGAWGGWQILPLTLMLAS-LVGALIGLALV 247
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
++ M +P+G +++ G I+ + + L
Sbjct: 248 RLKRT---------------QMGAALPFGPYLAIAGWIAVLWGDEIVASYLQL 285
>gi|170769540|ref|ZP_02903993.1| peptidase, A24 family [Escherichia albertii TW07627]
gi|170121597|gb|EDS90528.1| peptidase, A24 family [Escherichia albertii TW07627]
Length = 155
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVF 69
+ D ++P+R + +L S LL D ++G F
Sbjct: 7 FLSLYICLSTLLFFYDAKHGLLPDRFTCPLLWSGLLFYQICHPADLANALWGAIIGYGAF 66
Query: 70 IICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
I + +G GDVK L + W WT + G +++ +L
Sbjct: 67 AIIYWGYRTLRHKEGLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVALGVLIRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVV 146
>gi|218701740|ref|YP_002409369.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli IAI39]
gi|301019912|ref|ZP_07184047.1| bacterial Peptidase A24 protein [Escherichia coli MS 196-1]
gi|218371726|emb|CAR19576.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli IAI39]
gi|299882010|gb|EFI90221.1| bacterial Peptidase A24 protein [Escherichia coli MS 196-1]
Length = 269
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|308174504|ref|YP_003921209.1| membrane protease and transmethylase [Bacillus amyloliquefaciens
DSM 7]
gi|307607368|emb|CBI43739.1| membrane protease and transmethylase [Bacillus amyloliquefaciens
DSM 7]
gi|328554423|gb|AEB24915.1| membrane protease and transmethylase [Bacillus amyloliquefaciens
TA208]
gi|328912827|gb|AEB64423.1| membrane protease and transmethylase [Bacillus amyloliquefaciens
LL3]
Length = 250
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 16/157 (10%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
+ ++DL +IP++V + L ++ +D V +I F +
Sbjct: 107 MIVTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFIMFVSKG 166
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+G GDVKL + G ++F I+G + +
Sbjct: 167 GIGAGDVKLFGVIGLALGVKLVLIAFFL-SVIIGAVYGMCAAAGGR-------------- 211
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
K P+ AI+ G +SY + L++
Sbjct: 212 -LGKKQPFPFAPAIAAGSAVSYLYGEELFSFYIKLAS 247
>gi|254299348|ref|ZP_04966798.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 406e]
gi|157808885|gb|EDO86055.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 406e]
Length = 304
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 150 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 209
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 210 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 253
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 254 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 304
>gi|227887670|ref|ZP_04005475.1| prepilin peptidase A [Escherichia coli 83972]
gi|300973516|ref|ZP_07172230.1| bacterial Peptidase A24 protein [Escherichia coli MS 45-1]
gi|227835066|gb|EEJ45532.1| prepilin peptidase A [Escherichia coli 83972]
gi|300410732|gb|EFJ94270.1| bacterial Peptidase A24 protein [Escherichia coli MS 45-1]
gi|307555058|gb|ADN47833.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli ABU 83972]
Length = 269
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|319639057|ref|ZP_07993814.1| peptidase A24 domain-containing protein [Neisseria mucosa C102]
gi|317399635|gb|EFV80299.1| peptidase A24 domain-containing protein [Neisseria mucosa C102]
Length = 295
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 25/154 (16%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFII 71
LI L+ D + +P+ ++ ++ LL + + G +
Sbjct: 142 LILTAILIALTFIDADTQYLPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYT 201
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KLL + W G +F A++G + ++ +
Sbjct: 202 LCAVYKLLTGKIGMGNGDFKLLAALGAWLGV-GILPVLIFMAALVGLLGALIARVGK--- 257
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+G ++++ G I
Sbjct: 258 ----------------GQYFAFGPSLAVAGWIIL 275
>gi|154686942|ref|YP_001422103.1| hypothetical protein RBAM_025120 [Bacillus amyloliquefaciens FZB42]
gi|154352793|gb|ABS74872.1| ComC [Bacillus amyloliquefaciens FZB42]
Length = 250
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 16/157 (10%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
+ ++DL +IP++V + L F+ +D V ++ F +
Sbjct: 107 MIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFIMFVSKG 166
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+G GDVKL + G ++F V I R
Sbjct: 167 GIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGR--------------- 211
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
K P+ AIS G +SY + L++
Sbjct: 212 -LGKKQPFPFAPAISAGSALSYLYGEELFSFYIKLAS 247
>gi|227328706|ref|ZP_03832730.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 281
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 21/142 (14%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFCFFA---- 77
+ D+ + ++P+ +++ +L LL + + + G + + + F
Sbjct: 147 TVIDIKTLLLPDVLTLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATG 206
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GD KLL + W GW + + + A+ G ++++ +R
Sbjct: 207 KEALGYGDFKLLAALGAWLGWQ-ALPNLVLVAALSGLVVTLIWRGLRKE----------- 254
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
+ +G +++GG+
Sbjct: 255 ----DTAKPLAFGPWLAIGGVF 272
>gi|302391025|ref|YP_003826845.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501]
gi|302203102|gb|ADL11780.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501]
Length = 160
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 8/157 (5%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L A D+ +IPN ++ ++ L+ + + + L + I
Sbjct: 3 ILLGIILAVAMWIDIKDKIIPNWLTFSLMLLGLIINLSID-GWSGLLFSLQGLGVGLAIF 61
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL-------TVRM 125
F +G GDVKL+ G L L + G I ++ ++
Sbjct: 62 LIPFVLGGLGAGDVKLVAGIGAVKGVKFVLLDSLVIAIVGGIISLFILIQEKKLGRMIKK 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ +P + + + PYG+A++ G +
Sbjct: 122 VIYRLPFKSLSDREDQEGNDAFPYGVAVAFGTWYTLF 158
>gi|307153098|ref|YP_003888482.1| Prepilin peptidase [Cyanothece sp. PCC 7822]
gi|306983326|gb|ADN15207.1| Prepilin peptidase [Cyanothece sp. PCC 7822]
Length = 270
Score = 67.2 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 28/179 (15%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG------------MD 54
+ + + L+ +L D+ + +PN ++ L L+ G
Sbjct: 102 LSTLGYWAFCSWLLALSLIDVDTMTLPNALTQSGLVLGLVFQGTRGGSDFSQIPHNLMFG 161
Query: 55 YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
L + + I+ + F MGGGD KL W GW L+ A+
Sbjct: 162 IVGAVLGIWLFEIIRWVGTLVFGQEAMGGGDPKLAAMIGAWLGWKYLLLTGFLACALGTA 221
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
V IL + ++ I +G + +G ++ M
Sbjct: 222 FGVVAILLTQ----------------MGRRHPIRFGPFLGLGAALTLFWGEKMISTYMK 264
>gi|291556753|emb|CBL33870.1| Type II secretory pathway, prepilin signal peptidase PulO and
related peptidases [Eubacterium siraeum V10Sc8a]
Length = 352
Score = 67.2 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIV 68
V ++ L+ + D+ IP +I + + T F M + V +
Sbjct: 111 VVAIVFFSLLIVLSCIDIDHMEIPYWCTISIAVLGIATFFTEPNMPWWEHFAGAAVIAVP 170
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
F I F MGGGDV+L+ ++ GW
Sbjct: 171 FAILALF---GGMGGGDVQLMAASGFVLGWKIVP 201
>gi|157155400|ref|YP_001464427.1| type IV prepilin peptidase family protein [Escherichia coli
E24377A]
gi|157077430|gb|ABV17138.1| type IV prepilin peptidase family protein [Escherichia coli
E24377A]
Length = 269
Score = 67.2 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDRQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 IAFYSLRWIAGVVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATIYLQALF 269
>gi|323173958|gb|EFZ59586.1| type 4 prepilin-like proteins leader peptide-processing enzyme
domain protein [Escherichia coli LT-68]
Length = 157
Score = 67.2 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 20/143 (13%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFIICFCFFAF--- 78
L D ++P+R + +L S LL + ++G F + + +
Sbjct: 21 FLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRH 80
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GDVK L + W WT + G + V +L
Sbjct: 81 KEGLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKE----------- 129
Query: 138 PKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 130 ----SLKNPLPFGPFLAAAGFVV 148
>gi|288553595|ref|YP_003425530.1| aspartate peptidase [Bacillus pseudofirmus OF4]
gi|288544755|gb|ADC48638.1| peptidase A24A domain protein, aspartate peptidase [Bacillus
pseudofirmus OF4]
Length = 253
Score = 67.2 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 19/154 (12%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVGLIVFIICFCFFAFNI 80
+SD+ +IP+++ + FLL + + + VG + ++ +
Sbjct: 115 FVSDIRYMLIPDKILLFFTPFFLLLRLTVAPLDPWWSSLVGAAVGFGLLLLIAVI-SRGG 173
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
MGGGD+KL + GW L+F F I + + ++
Sbjct: 174 MGGGDIKLFAVLGLVLGWQDVLLAFFFSCLYGTIIAGIGMAAGKVK-------------- 219
Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K IP+G I +G L +Y +GL
Sbjct: 220 --RKKPIPFGPFIVLGALTAYFYGNSLVQWYIGL 251
>gi|315291312|gb|EFU50672.1| bacterial Peptidase A24 protein [Escherichia coli MS 153-1]
Length = 269
Score = 67.2 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ + + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDNQWLPDVFTQGVLWTGLIATWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|126455285|ref|YP_001067769.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 1106a]
gi|167847397|ref|ZP_02472905.1| Bacterial Peptidase A24 N-terminal domain family protein
[Burkholderia pseudomallei B7210]
gi|167895985|ref|ZP_02483387.1| Bacterial Peptidase A24 N-terminal domain family protein
[Burkholderia pseudomallei 7894]
gi|167912630|ref|ZP_02499721.1| Bacterial Peptidase A24 N-terminal domain family protein
[Burkholderia pseudomallei 112]
gi|167920598|ref|ZP_02507689.1| Bacterial Peptidase A24 N-terminal domain family protein
[Burkholderia pseudomallei BCC215]
gi|242317689|ref|ZP_04816705.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 1106b]
gi|254190996|ref|ZP_04897502.1| type IV prepilin leader peptidase [Burkholderia pseudomallei
Pasteur 52237]
gi|254199074|ref|ZP_04905489.1| type IV prepilin leader peptidase [Burkholderia pseudomallei S13]
gi|254261552|ref|ZP_04952606.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 1710a]
gi|126228927|gb|ABN92467.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 1106a]
gi|157938670|gb|EDO94340.1| type IV prepilin leader peptidase [Burkholderia pseudomallei
Pasteur 52237]
gi|169656904|gb|EDS88301.1| type IV prepilin leader peptidase [Burkholderia pseudomallei S13]
gi|242140928|gb|EES27330.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 1106b]
gi|254220241|gb|EET09625.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 1710a]
Length = 304
Score = 67.2 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 150 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 209
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 210 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 253
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 254 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 304
>gi|116747663|ref|YP_844350.1| peptidase A24A domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116696727|gb|ABK15915.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Syntrophobacter fumaroxidans MPOB]
Length = 263
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
+ L+ DL + I + S+ L + +F+ + +E + +++G
Sbjct: 104 QFGIEFFFISLLIVITYIDLDTFKIFDLFSLGGLVAGFGFSFISIQVTWEESLVGIILGG 163
Query: 67 IVFIIC----FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+F + +G GDV LL + GW + L I + + +
Sbjct: 164 GLFFLIEKGYQWIRHDEGLGRGDVYLLAMIGAYVGWAGVVFTILVASVIGAAVGMIAM-- 221
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +K IP+G +S+G + + F +G
Sbjct: 222 --------------RRANEGLKTAIPFGPFLSLGAIGYIFFGHSFYAWYLG 258
>gi|89109747|ref|AP_003527.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli str. K-12 substr. W3110]
gi|90111523|ref|NP_417446.4| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
str. K-12 substr. MG1655]
gi|170082516|ref|YP_001731836.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli str. K-12 substr. DH10B]
gi|238902091|ref|YP_002927887.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
BW2952]
gi|253772189|ref|YP_003035020.1| prepilin peptidase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|300950834|ref|ZP_07164719.1| bacterial Peptidase A24 protein [Escherichia coli MS 116-1]
gi|300958343|ref|ZP_07170485.1| bacterial Peptidase A24 protein [Escherichia coli MS 175-1]
gi|7674168|sp|Q46836|PPPA_ECOLI RecName: Full=Leader peptidase pppA
gi|85675780|dbj|BAE77033.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli str. K12 substr. W3110]
gi|87082194|gb|AAC76008.2| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
str. K-12 substr. MG1655]
gi|169890351|gb|ACB04058.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli str. K-12 substr. DH10B]
gi|238860082|gb|ACR62080.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
BW2952]
gi|253323233|gb|ACT27835.1| Prepilin peptidase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|260447986|gb|ACX38408.1| Acid phosphatase [Escherichia coli DH1]
gi|300314986|gb|EFJ64770.1| bacterial Peptidase A24 protein [Escherichia coli MS 175-1]
gi|300449870|gb|EFK13490.1| bacterial Peptidase A24 protein [Escherichia coli MS 116-1]
Length = 269
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|400693|sp|P31712|LEP4_PECCC RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; AltName: Full=Pectic enzymes
secretion protein outO; Includes: RecName: Full=Leader
peptidase; AltName: Full=Prepilin peptidase; Includes:
RecName: Full=N-methyltransferase
gi|581154|emb|CAA49656.1| outO [Pectobacterium carotovorum]
Length = 279
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 21/142 (14%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFCFFA---- 77
+ D+ + ++P+ +++ +L LL + + + G + + + F
Sbjct: 145 TVIDIKTLLLPDELTLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATG 204
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GD KLL + W GW + + + A+ G ++++ +R
Sbjct: 205 KEALGYGDFKLLAALGAWLGWQ-ALPNLVLVAALSGLVVTLIWRGLRKE----------- 252
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
+ +G +++GG+
Sbjct: 253 ----DTAKPLAFGPWLAIGGVF 270
>gi|400694|sp|P31711|LEP4_ERWCH RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; AltName: Full=Pectic enzymes
secretion protein outO; Includes: RecName: Full=Leader
peptidase; AltName: Full=Prepilin peptidase; Includes:
RecName: Full=N-methyltransferase
gi|148444|gb|AAA24841.1| secretory component [Erwinia chrysanthemi]
gi|259992|gb|AAB24188.1| OutO=pectic enzyme secretion protein [Erwinia chrysanthemi,
Peptide, 283 aa]
Length = 283
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 5/134 (3%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFC 74
V A D + ++P+ +++ +L LL + E + + G + + +
Sbjct: 139 FGIFVALAAIDARTQLLPDVMTLPLLWGGLLFNLADTFVPLEQAVVGAVAGYLSLWLIYW 198
Query: 75 FFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F +G GD KLL + W GW L ++ R+
Sbjct: 199 AFRLLSGREALGHGDFKLLAALGAWLGWQALPNLVLIASLTGLTATLLWQRIHRLSMQQP 258
Query: 131 PIFGMFVPKSFLMK 144
FG ++ S M
Sbjct: 259 LAFGPWLAVSGAMG 272
>gi|323529416|ref|YP_004231568.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
gi|323386418|gb|ADX58508.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
Length = 176
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 59/174 (33%), Gaps = 10/174 (5%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + + + +V AA +DL IPN + L LL L
Sbjct: 1 MLTTANILPPIAPCVIALVVAAASTDLQCRRIPNLLVGAGLFGALLVQCWLKGTGAGAMA 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L ++ + F+ M GDVKLL W G F + L I G + V I
Sbjct: 61 WLTGAVVGLALFLPFYLVRGMAAGDVKLLAMVGAWIGPLLVFYAALATCVIGGAWMLVLI 120
Query: 121 LTV----------RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ R+I + S +PYG+AI+ G + +
Sbjct: 121 VRRHQLGKVWANLRVIAHPALQGSGSARDSIDSVGSVPYGVAIAAGTIAVLLTA 174
>gi|73542646|ref|YP_297166.1| prepilin peptidase [Ralstonia eutropha JMP134]
gi|72120059|gb|AAZ62322.1| Prepilin peptidase [Ralstonia eutropha JMP134]
Length = 295
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 21/163 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
L+ + L+ + D + ++P+++++ ++ LL + + G
Sbjct: 140 QGVAALVLLWALMALTMIDADTQLLPDQITLPLVWLGLLLNLAGLFVPIADAVIGAVAGY 199
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ + F MG GD KL+ + WFGW L + I
Sbjct: 200 LLLWSAYWLFKLVRGKEGMGYGDFKLMAALGAWFGWQALPSLVLLSSVVGVVFGVANIAL 259
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
R P+G I+ G +
Sbjct: 260 RRQ----------------GRDTPFPFGPFIAGAGGLVLFFGP 286
>gi|30142055|gb|AAO17815.1| CfcP [Citrobacter rodentium]
Length = 281
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIALHL 62
+V A F L A+ DL + ++P+ + ++L L+ + + +
Sbjct: 119 SLVQLAFFAFFLCLLYALAVIDLNTFLLPDSLVYLLLWGGLIASVRNLIPVSPRDSVIGA 178
Query: 63 LVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+ + F G GDVKL + A W G T + L + +
Sbjct: 179 AMIWSFTWLMAEGFQRIVGREGFGKGDVKLFAACAAWLGTTHIAVLMLGSALLGLCFFLL 238
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+R+ K P+G AI + +
Sbjct: 239 RFGYLRICKRAP-------RSDLAEKGYFPFGPAIVLMAVW 272
>gi|150377242|ref|YP_001313837.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
gi|150031789|gb|ABR63904.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
Length = 170
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 60/141 (42%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
F + + +A + D+ + I NR+ + ++ +F + A +G+ ++ I ++V +V
Sbjct: 9 LAFFLFAGVMTYAGIRDVATMTISNRLVVFLVIAFAVLAPAVGLSFDTITSSIVVASVVL 68
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
F FA +GGGD KLL +W G + L+ I + + R
Sbjct: 69 ACTFVLFAAGWIGGGDAKLLPVAVLWLGADLALPFVLYTSVIGAALTLGLLQLRRAPLPL 128
Query: 130 IPIFGMFVPKSFLMKNKIPYG 150
+ + + + IPYG
Sbjct: 129 VLKKNAWSKRLLDRETGIPYG 149
>gi|94271447|ref|ZP_01291960.1| Prepilin peptidase [delta proteobacterium MLMS-1]
gi|93450444|gb|EAT01630.1| Prepilin peptidase [delta proteobacterium MLMS-1]
Length = 270
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 21/154 (13%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV-----G 65
V+ L+ DL +IP+ +S+ + A L G A ++
Sbjct: 115 VYFFFSAALLAIFFIDLDHQLIPDVISLPGIALGFTAALLPGGIGWQAAGLGILLGGGIF 174
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+V + + MGGGD+KLL + GW + + ++LG ++ V + +
Sbjct: 175 YLVALGYYLVTRREGMGGGDIKLLAMLGAFLGWQ-ALPFIILASSLLGLVVGVGAMVRQG 233
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
++ IP+G + + +
Sbjct: 234 RGG---------------RSVIPFGPFLVIAAWL 252
>gi|114568968|ref|YP_755648.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10]
gi|114339430|gb|ABI64710.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10]
Length = 165
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 74/165 (44%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ L ++ AA+ D +IPN + ++L +F + A G+ + + HLL G
Sbjct: 1 MLIQITILALAGLMLAAAIFDATKFIIPNWLCGLVLLTFPIAAVAAGLGWAEVGNHLLGG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ +I F FA +GGGD KL + A+WFGW + V G ++ + + +
Sbjct: 61 ALALVIGFALFAPGWVGGGDAKLFAAAALWFGWPEFLAFLIHTVLAGGVLVVILLALRWL 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ + + +PYGIAI+ G S P++ +
Sbjct: 121 APRLPVLATRTEGTALAVNAPVPYGIAIAAGVFWSLPNTVFWAAF 165
>gi|312972775|ref|ZP_07786948.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli 1827-70]
gi|310332717|gb|EFP99930.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli 1827-70]
gi|323941934|gb|EGB38113.1| peptidase A24 domain-containing protein [Escherichia coli E482]
gi|332344922|gb|AEE58256.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli UMNK88]
Length = 269
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|260718943|ref|YP_003225084.1| putative type II secretion protein EtpN [Escherichia coli O103:H2
str. 12009]
gi|257762454|dbj|BAI33950.1| putative type II secretion protein EtpN [Escherichia coli O103:H2
str. 12009]
Length = 277
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 21/161 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
+ + L+ A+ D +AM+P+ +++ +L LL + G + E + + G
Sbjct: 131 LTLVAAWLFIAMLLVLAVIDCRTAMLPDVLTLSLLWLGLLFSLQGGRVPLEEAVVGAVSG 190
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F F +G GD KL + W GW S L F ++ G I++V +
Sbjct: 191 YLCLWGLYWLFRFVTGREGLGYGDFKLAAALGAWMGWQ-VLPSVLLFASVSGLIITVLL- 248
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ +P+G +++ G+ +
Sbjct: 249 --------------RFVTATDFTRPLPFGPWLALSGVCHFL 275
>gi|91212380|ref|YP_542366.1| putative prepilin peptidase A [Escherichia coli UTI89]
gi|218560041|ref|YP_002392954.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli S88]
gi|91073954|gb|ABE08835.1| putative prepilin peptidase A [Escherichia coli UTI89]
gi|218366810|emb|CAR04579.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli S88]
gi|222034688|emb|CAP77430.1| Leader peptidase pppA [Escherichia coli LF82]
gi|294489782|gb|ADE88538.1| type IV prepilin peptidase family protein [Escherichia coli
IHE3034]
gi|307625432|gb|ADN69736.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli UM146]
gi|312947526|gb|ADR28353.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli O83:H1 str. NRG 857C]
gi|323951512|gb|EGB47387.1| peptidase A24 domain-containing protein [Escherichia coli H252]
gi|323957546|gb|EGB53261.1| peptidase A24 domain-containing protein [Escherichia coli H263]
Length = 269
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|296134879|ref|YP_003642121.1| Prepilin peptidase [Thiomonas intermedia K12]
gi|295795001|gb|ADG29791.1| Prepilin peptidase [Thiomonas intermedia K12]
Length = 289
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 21/149 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLI 67
S +++ + L+ AL D + ++P+ +++ +L LL L VG +
Sbjct: 131 SLAYIVLLWALITLALIDFDTTLLPDSITLPLLWLGLLWHAWLHPEQLSSAVWGAAVGYL 190
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + WFG + L + +I G ++ + + +
Sbjct: 191 ALWTVYQGFKLLTGKEGMGFGDFKLLAALGAWFGVA-ALLPIILLSSICGAVIGIALQLL 249
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
++ IP+G
Sbjct: 250 KLT---------------ERGRPIPFGPF 263
>gi|330959464|gb|EGH59724.1| putative type 4 prepilin-like proteins leader peptide processing
enzyme [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 295
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 22/160 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
+ L+ +C L DL ++P+ + I + L +FL + + G
Sbjct: 130 ETCFALLMIWCGTALFLIDLDEMLLPDTIVIPGIWIGLAASFLGVFSTLHDGFIGAVTGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ + F MG GD KLL W GW L L + + L
Sbjct: 190 LLLALPALIFQAITGRQGMGNGDFKLLALFGAWLGWQALPLILLVSAVAASIVGLIAGLG 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
V+ P+G I GGL++
Sbjct: 250 VK-----------------SRSEPFPFGPFIIAGGLLALF 272
>gi|294338833|emb|CAZ87167.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
(Protein secretion protein XCPA) (Protein pilD)
[Includes: Leader peptidase (Prepilin peptidase);
N-methyltransferase] [Thiomonas sp. 3As]
Length = 289
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 21/149 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLI 67
S +++ + L+ AL D + ++P+ +++ +L LL L VG +
Sbjct: 131 SLAYIVLLWALITLALIDFDTTLLPDSITLPLLWLGLLWHAWLHPEQLSSAVWGAAVGYL 190
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + WFG + L + +I G ++ + + +
Sbjct: 191 ALWTVYQGFKLLTGKEGMGFGDFKLLAALGAWFGVA-ALLPIILLSSICGAVIGIALQLL 249
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
++ IP+G
Sbjct: 250 KLT---------------ERGRPIPFGPF 263
>gi|167837986|ref|ZP_02464845.1| type IV pilus prepilin peptidase PilD [Burkholderia thailandensis
MSMB43]
Length = 304
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 150 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWDTFASLRAAVVGAIAGY 209
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 210 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 253
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 254 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 304
>gi|283788197|ref|YP_003368062.1| prepillin peptidase CfcP [Citrobacter rodentium ICC168]
gi|282951651|emb|CBG91351.1| putative prepillin peptidase CfcP [Citrobacter rodentium ICC168]
Length = 281
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 13/161 (8%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIALHL 62
+V A F L A+ DL + ++P+ + ++L L+ + + +
Sbjct: 119 SLVQLAFFAFFLCLLYALAVIDLNTFLLPDSLVYLLLWGGLIASVRNLIPVSPRDSVIGA 178
Query: 63 LVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+ + F G GDVKL + A W G T + L + +
Sbjct: 179 AMIWSFTWLMAEGFQRIVGREGFGKGDVKLFAACAAWLGTTHIAVLMLGSALLGLCFFLL 238
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+R+ K +P+G AI + +
Sbjct: 239 RFGYLRICKRAP-------RSDLAEKGYLPFGPAIVLMAVW 272
>gi|239817191|ref|YP_002946101.1| Prepilin peptidase [Variovorax paradoxus S110]
gi|239803768|gb|ACS20835.1| Prepilin peptidase [Variovorax paradoxus S110]
Length = 321
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICFCFFA 77
+ L D + +P+ ++ +L L+ A G + G + + + +
Sbjct: 167 ICQFLIDFDTQFLPDALNYPLLWLGLVGAAMGWTGTALSSAVWGAVFGYLSLWLVYHGYR 226
Query: 78 F----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
MG GD KLL + W G ++ + +++G ++ + + V + +
Sbjct: 227 LATGKEGMGYGDFKLLAALGAWLG-ADYLIAIILVSSLVGAVIGLTLRLVGKLAHKDI-- 283
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ +G ++ GL+
Sbjct: 284 ------------PMAFGPFLAGAGLVCLVAGPELVRQ 308
>gi|311103771|ref|YP_003976624.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Achromobacter xylosoxidans A8]
gi|310758460|gb|ADP13909.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Achromobacter xylosoxidans A8]
Length = 285
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 21/157 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + LV A D S ++P+ ++ +L + LL F ++ + + G +
Sbjct: 131 ALSAMGLSAALVALAWIDFESTLLPDALTQPLLWAGLLVNLFDAFASLQMAVVGAVAGYV 190
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F F MG GD KLL + WFG + + L ++LG ++ +
Sbjct: 191 FLWVIFHVFRLLTGREGMGYGDFKLLAALGAWFGVE-ALPTLLLSASLLGVLIGGALTLS 249
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+P+G +++ G+++
Sbjct: 250 GRAG---------------RGQPLPFGPYLALAGVVT 271
>gi|301048224|ref|ZP_07195259.1| bacterial Peptidase A24 protein [Escherichia coli MS 185-1]
gi|331659247|ref|ZP_08360189.1| leader peptidase PppA [Escherichia coli TA206]
gi|300299918|gb|EFJ56303.1| bacterial Peptidase A24 protein [Escherichia coli MS 185-1]
gi|324005483|gb|EGB74702.1| bacterial Peptidase A24 protein [Escherichia coli MS 57-2]
gi|331053829|gb|EGI25858.1| leader peptidase PppA [Escherichia coli TA206]
Length = 269
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGMATLYLQALF 269
>gi|53720619|ref|YP_109605.1| type IV prepilin leader peptide type M1 [Burkholderia pseudomallei
K96243]
gi|52211033|emb|CAH37021.1| type IV prepilin leader peptide type M1 [Burkholderia pseudomallei
K96243]
Length = 309
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 155 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 214
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 215 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 258
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 259 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 309
>gi|254255252|ref|ZP_04948568.1| Type II secretory pathway prepilin signal peptidase PulO
[Burkholderia dolosa AUO158]
gi|124900989|gb|EAY71739.1| Type II secretory pathway prepilin signal peptidase PulO
[Burkholderia dolosa AUO158]
Length = 200
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 16/163 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L + AA +D+ S IPNRV V L L+ L L
Sbjct: 31 IPLCVTLLAIVAASTDIASRRIPNRVVAVGLVGALIAQCALHGIAAGALQWLAGAATGLA 90
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR------ 124
+ F+ M GDVKL+ + W G +F +LGGI ++ + +R
Sbjct: 91 LLLPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IALATFVLGGIGAIVLALLRGRVRDL 149
Query: 125 ---------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ + +PYG+AI+ G L
Sbjct: 150 CVNVCRMVARRSFALHGESADGSAPVASAGALPYGVAIAAGTL 192
>gi|75909194|ref|YP_323490.1| type 4 prepilin peptidase 1 [Anabaena variabilis ATCC 29413]
gi|75702919|gb|ABA22595.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Anabaena variabilis ATCC 29413]
Length = 269
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 30/182 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM----DYELIALHL 62
+ + + L+ +L DL + +PN ++ L L+ ++G + HL
Sbjct: 102 ILTLGYWTFCSWLLALSLIDLDTMTLPNPLTKSGLVLGLVFQMVVGYASDPSLPGLIRHL 161
Query: 63 LVGLIVFIICFCFF----------AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
++G++ ++ F MG GD KL W GW L+ L +
Sbjct: 162 MMGIVGAVLGLWLFEAIALLGVFLQKEAMGAGDAKLAAMMGAWLGWRYLLLAGLIACTLG 221
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ I+ + KIP+G ++ G I+ A +
Sbjct: 222 TLVGIGAIMLSKRKW----------------GQKIPFGPFLASGAFITLFGGQPILSAYL 265
Query: 173 GL 174
L
Sbjct: 266 QL 267
>gi|86147470|ref|ZP_01065782.1| hypothetical protein MED222_21489 [Vibrio sp. MED222]
gi|85834763|gb|EAQ52909.1| hypothetical protein MED222_21489 [Vibrio sp. MED222]
Length = 176
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 54/129 (41%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ L+ ++ D+ + IPN+V I+ + + + G ++ + + L+ + +F
Sbjct: 6 LVFWVLLIIVSVFDVKESRIPNKVLILFVLLYFILLINGGFSWDSLVISLMGAITLFFSG 65
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ M GDVK L ++ GW + + + G I + ++L + + +
Sbjct: 66 LFLYLLKAMSAGDVKFLGVIGLYVGWGNLLDTSYYILISSGIIATFYLLYNNANSESLTV 125
Query: 133 FGMFVPKSF 141
F K
Sbjct: 126 RNYFEEKLM 134
>gi|229918379|ref|YP_002887025.1| peptidase A24A domain protein [Exiguobacterium sp. AT1b]
gi|229469808|gb|ACQ71580.1| peptidase A24A domain protein [Exiguobacterium sp. AT1b]
Length = 250
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 17/155 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V + + L+ A+SDL + ++PN + LL +L G + + L+G
Sbjct: 99 VTTLLAFAFLSTLLALAMSDLSTMLVPNVILKFTAPVLLLLTYLTGASWWNPLVGALLGF 158
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ F +G GDVKL T + G ++ I + ++T +
Sbjct: 159 SLLATVFFVSK-GGLGAGDVKLFTMIGLVLGPRDVLVALFLSSLIGAIVGIGLMMTKK-- 215
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
K IP+ +I++G ++++
Sbjct: 216 --------------IGRKQPIPFVPSIALGTMLTF 236
>gi|218691258|ref|YP_002399470.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli ED1a]
gi|306816692|ref|ZP_07450824.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli NC101]
gi|218428822|emb|CAR09766.2| bifunctional prepilin leader peptidase and methylase [Escherichia
coli ED1a]
gi|305850257|gb|EFM50716.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli NC101]
Length = 269
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|297570269|ref|YP_003691613.1| Prepilin peptidase [Desulfurivibrio alkaliphilus AHT2]
gi|296926184|gb|ADH86994.1| Prepilin peptidase [Desulfurivibrio alkaliphilus AHT2]
Length = 270
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 21/163 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIV 68
++ I L+ DL +IP+ +S+ + +F+ G+ + L +L+G
Sbjct: 113 LIYFIFSAALLAILFIDLDHQLIPDVISLPGIVLGFAASFVLSGVTWVDAGLGILLGGGS 172
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F + + + MGGGD+KLL + GW S + ++LG ++ + + +
Sbjct: 173 FYLVALGYRLATGRDGMGGGDIKLLAMLGAFLGWQ-SLPFIILASSLLGLVVGIGAMIRQ 231
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ IP+G + + +
Sbjct: 232 GKGG---------------RSVIPFGPFLVVAAWLWLFFPAWI 259
>gi|291285884|ref|YP_003502701.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
gi|290765757|gb|ADD59717.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
Length = 277
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 21/161 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
+ + L+ A+ D +AM+P+ +++ +L LL + G + E + + G
Sbjct: 131 LTLVAAWLFIAMLLVLAVIDCRTAMLPDVLTLSLLWLGLLFSLQGGSVPLEEAVVGAVSG 190
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F F +G GD KL + W GW S L F ++ G I++V +
Sbjct: 191 YLCLWGLYWLFRFVTGREGLGYGDFKLAAALGAWMGWQ-VLPSVLLFASVSGLIITVLL- 248
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ +P+G +++ G+ +
Sbjct: 249 --------------RFVTATDFTRPLPFGPWLALSGVCHFL 275
>gi|218441560|ref|YP_002379889.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424]
gi|218174288|gb|ACK73021.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424]
Length = 270
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 28/180 (15%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT------------AFLLGMD 54
+ + + L+ +L DL + +PN ++ L L+ A L +
Sbjct: 102 ITTGGYWAFLSWLLALSLIDLDTMTLPNSLTESGLVLGLIFQATRSGFDGSEMAINLILG 161
Query: 55 YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
L L + I+ + F MGGGD KL W GW L+ A+
Sbjct: 162 IIGAVLGLWLFDIIRWVGTIIFQQEAMGGGDPKLAAMIGAWLGWKYLLLTGFLACALGAF 221
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
V IL+ + ++ I +G + +G ++ + L
Sbjct: 222 FGIVAILSTQ----------------MGRRHPIRFGPFLGLGAALALFWGESLISTYIKL 265
>gi|315137568|dbj|BAJ44727.1| bifunctional prepilin leader peptidase/methylase [Escherichia coli
DH1]
Length = 257
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL +P+ + +L + L+ A+ + + +LVG I
Sbjct: 115 LAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 174
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 175 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 229
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 230 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 257
>gi|260846120|ref|YP_003223898.1| leader peptidase HopD [Escherichia coli O103:H2 str. 12009]
gi|260857443|ref|YP_003231334.1| leader peptidase HopD [Escherichia coli O26:H11 str. 11368]
gi|260870065|ref|YP_003236467.1| leader peptidase HopD [Escherichia coli O111:H- str. 11128]
gi|300921869|ref|ZP_07138025.1| peptidase, A24 family protein [Escherichia coli MS 182-1]
gi|301325111|ref|ZP_07218645.1| peptidase, A24 family protein [Escherichia coli MS 78-1]
gi|307315099|ref|ZP_07594682.1| peptidase A24A prepilin type IV [Escherichia coli W]
gi|257756092|dbj|BAI27594.1| leader peptidase HopD [Escherichia coli O26:H11 str. 11368]
gi|257761267|dbj|BAI32764.1| leader peptidase HopD [Escherichia coli O103:H2 str. 12009]
gi|257766421|dbj|BAI37916.1| leader peptidase HopD [Escherichia coli O111:H- str. 11128]
gi|300421717|gb|EFK05028.1| peptidase, A24 family protein [Escherichia coli MS 182-1]
gi|300847990|gb|EFK75750.1| peptidase, A24 family protein [Escherichia coli MS 78-1]
gi|306905448|gb|EFN35983.1| peptidase A24A prepilin type IV [Escherichia coli W]
gi|320199506|gb|EFW74096.1| leader peptidase HopD [Escherichia coli EC4100B]
gi|323154160|gb|EFZ40363.1| type 4 prepilin-like s leader peptide-processing enzyme domain
protein [Escherichia coli EPECa14]
gi|323163001|gb|EFZ48836.1| type 4 prepilin-like proteins leader peptide-processing enzyme
domain protein [Escherichia coli E128010]
gi|323376799|gb|ADX49067.1| peptidase A24A prepilin type IV [Escherichia coli KO11]
gi|323944257|gb|EGB40333.1| type IV leader peptidase [Escherichia coli H120]
Length = 155
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVF 69
++ V L D ++P+R + +L S LL + ++G F
Sbjct: 7 FLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W WT + G + V +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVV 146
>gi|134280151|ref|ZP_01766862.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 305]
gi|134248158|gb|EBA48241.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 305]
Length = 304
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 150 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 209
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 210 LFLWCILWLFKLLRGIEGIGYGDLKLLGALGAWLGWEALPQV----------------VL 253
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 254 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 304
>gi|167825911|ref|ZP_02457382.1| type IV pilus prepilin peptidase PilD [Burkholderia pseudomallei 9]
gi|226199612|ref|ZP_03795168.1| type IV prepilin leader peptidase [Burkholderia pseudomallei
Pakistan 9]
gi|225928358|gb|EEH24389.1| type IV prepilin leader peptidase [Burkholderia pseudomallei
Pakistan 9]
Length = 304
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 150 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 209
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 210 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 253
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 254 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 304
>gi|10955278|ref|NP_052619.1| EptN [Escherichia coli O157:H7 str. Sakai]
gi|149930773|ref|YP_001294696.1| w0032 [Escherichia coli]
gi|37695761|gb|AAR00423.1|AF401292_24 w0032 [Escherichia coli]
gi|2598411|emb|CAA70965.1| etpN [Escherichia coli]
gi|3337010|dbj|BAA31769.1| Type II secretion pathway related protein [Escherichia coli O157:H7
str. Sakai]
Length = 238
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ A + L+ A+ D +A++P+ +++ +L LL + G+ E + + G
Sbjct: 92 LTLAAAWLFISMLLVLAVIDCHTALLPDVLTLPLLWLGLLFSLQRGVVTLEEAVVGAVSG 151
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F F +G GD KL + W GW + S L F ++ G I++V +
Sbjct: 152 YLCLWGLYWLFRFATGREGLGYGDFKLAAALGAWMGWQ-ALPSILLFASVSGLIVTVLL- 209
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +P+G +++ G+ +
Sbjct: 210 --------------RIVTATDFTRPLPFGPWLALSGVCHFL 236
>gi|307131907|ref|YP_003883923.1| prepilin peptidase [Dickeya dadantii 3937]
gi|306529436|gb|ADM99366.1| prepilin peptidase [Dickeya dadantii 3937]
Length = 283
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 21/151 (13%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFC 74
L+ A D + ++P+ +++ +L LL + E + + G + + +
Sbjct: 139 FGTLLALAAIDARTQLLPDVMTLPLLWGGLLFNLADTFVPLEQAVVGAMAGYLSLWLIYW 198
Query: 75 FFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F +G GD KLL + W GW + + + ++ G ++ VR I
Sbjct: 199 AFRLLSGREALGQGDFKLLAALGAWLGWQ-ALPNLVLIASLTGLAATLLWRRVRRI---- 253
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
M+ + +G +++GG +S
Sbjct: 254 -----------SMQQPLAFGPWLAVGGAVSL 273
>gi|293416410|ref|ZP_06659049.1| leader peptidase pppA [Escherichia coli B185]
gi|291431766|gb|EFF04749.1| leader peptidase pppA [Escherichia coli B185]
Length = 269
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|300993065|ref|ZP_07180173.1| bacterial Peptidase A24 protein [Escherichia coli MS 200-1]
gi|300305189|gb|EFJ59709.1| bacterial Peptidase A24 protein [Escherichia coli MS 200-1]
gi|324011867|gb|EGB81086.1| bacterial Peptidase A24 protein [Escherichia coli MS 60-1]
Length = 269
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGMATLYLQALF 269
>gi|332528442|ref|ZP_08404434.1| prepilin peptidase [Hylemonella gracilis ATCC 19624]
gi|332042121|gb|EGI78455.1| prepilin peptidase [Hylemonella gracilis ATCC 19624]
Length = 318
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 10/143 (6%)
Query: 29 SAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICF----CFFAFNIMG 82
+ ++P+ ++ +L + L A G G + + MG
Sbjct: 161 TYLLPDPLTQPLLWAGLGGAALGWTGTALTDAFWGAAAGYLSLWLLAAAFHWITGREGMG 220
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GD KLL + W GW L ++ + + R T P
Sbjct: 221 HGDFKLLAALGGWLGWATLPPMLLLASSLGALVGLAVLWRQRRATVQTMHSDSAQPTPL- 279
Query: 143 MKNKIPYGIAISMGGLISYPDSY 165
IP+G ++ GL+ +
Sbjct: 280 ---YIPFGPFLAAAGLVLMASGH 299
>gi|331684610|ref|ZP_08385202.1| leader peptidase PppA [Escherichia coli H299]
gi|331078225|gb|EGI49431.1| leader peptidase PppA [Escherichia coli H299]
Length = 269
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|125973369|ref|YP_001037279.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Clostridium thermocellum ATCC 27405]
gi|125713594|gb|ABN52086.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Clostridium thermocellum ATCC 27405]
Length = 281
Score = 66.4 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 55/175 (31%), Gaps = 31/175 (17%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-------------GMDYELIALH 61
L+ DL +IPN++ + L +L +
Sbjct: 120 LMSVLIAVFFIDLDHMIIPNKLVVAALVGGVLPFVYNIFRPMDIYVDRKWWNPLLGAFIG 179
Query: 62 LLVGLIVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+V I+ + + MGGGDVKL ++ GW + ++ G + V +
Sbjct: 180 FGFLLLVAIVGYLVYKTDEAMGGGDVKLFAPIGLFLGWKMTIVALFISFVSAGIVSIVLL 239
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMGL 174
L + + +G I MG +Y L + L L
Sbjct: 240 LLKKKERRSTFV----------------FGPFIVMGTFFTYLFGWELLEWYLSTL 278
>gi|332702808|ref|ZP_08422896.1| Prepilin peptidase [Desulfovibrio africanus str. Walvis Bay]
gi|332552957|gb|EGJ50001.1| Prepilin peptidase [Desulfovibrio africanus str. Walvis Bay]
Length = 256
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 20/164 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFII 71
+I L+ A+ DL + ++P+R+++ L A L + + G F +
Sbjct: 106 MILGGMLLVASGIDLDNFILPDRLTLSGFPLALGFAVLRPDLALSDATWGAVAGAGAFKL 165
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F + +G GDVKL+ W GW ++ L + ++ L +
Sbjct: 166 IQVSYKFLRGVDGLGTGDVKLMLLIGAWLGWQLVPMAVLVGSVAALPVGILYALRSKRTG 225
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+PYG +S+G + L
Sbjct: 226 QPAI---------------VPYGPFLSLGAMACVLYGGELLRLL 254
>gi|283788029|ref|YP_003367894.1| T2SS leader peptidase GspO [Citrobacter rodentium ICC168]
gi|282951483|emb|CBG91182.1| putative T2SS leader peptidase GspO [Citrobacter rodentium ICC168]
Length = 257
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 5/145 (3%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALH 61
+ + + + + + DL ++P+++++ +L LL G+ E
Sbjct: 105 PEAIALTIALFLYFWFALALCIIDLRHLLLPDKLTLPLLWCGLLFNSYTGLISCEEAITG 164
Query: 62 LLVGLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
G + + +G GD+KL + W GW +
Sbjct: 165 AAAGYASLWLLNAFVRLLWRKEGIGYGDLKLFAAVGAWTGWQSLPPVIYIAAMMSIFYGL 224
Query: 118 VFILTVRMITNHIPIFGMFVPKSFL 142
+ IL R + IP +
Sbjct: 225 LMILRTRRRISVIPFGPGLAVSGWG 249
>gi|146343996|ref|YP_001201852.1| putative type 4 prepilin-like proteins leader peptide processing
enzyme [Pseudomonas fluorescens SBW25]
gi|146187808|emb|CAM96136.1| putative type 4 prepilin-like proteins leader peptide processing
enzyme [Pseudomonas fluorescens SBW25]
Length = 295
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 22/160 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
+ L+ + L DL ++P+ + I + L +FL + + + G
Sbjct: 130 ETCFALLMVWGGTALFLIDLDEMLLPDTIVIPGIWVGLAASFLGLFSTLQDGFIGAVTGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ + F MG GD KLL W GW L L + + L
Sbjct: 190 LLLALPAFIFQAITGRQGMGNGDFKLLALFGAWLGWQALPLIILVSAVAASIVGLIAGLG 249
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
V+ P+G I GGL++
Sbjct: 250 VK-----------------SRSEPFPFGPFIIAGGLLALF 272
>gi|256024449|ref|ZP_05438314.1| putative prepilin peptidase [Escherichia sp. 4_1_40B]
Length = 269
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGSWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|67923080|ref|ZP_00516572.1| Prepilin peptidase [Crocosphaera watsonii WH 8501]
gi|67855093|gb|EAM50360.1| Prepilin peptidase [Crocosphaera watsonii WH 8501]
Length = 269
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 27/180 (15%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY------- 55
+ + + + LV A+ D + +P ++ L L+ ++G +
Sbjct: 98 YQFTLTTIGYWVLVSWLVSLAMIDFDTMTLPGELTKSGLILGLIFQGIIGWQFAQTPEYL 157
Query: 56 ----ELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
L + + I+ F +GGGD KL W GW ++ +
Sbjct: 158 MTAITSAVLGIWLFCIIRWGGTWVFGKEALGGGDSKLAAMLGAWLGWKYLLVTSFLACLL 217
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
++ P+G +++G ++S +
Sbjct: 218 GSLFGVSGMVLG----------------FMGRLQYFPFGPFLALGAILSLFWGEIIISTY 261
>gi|32473551|ref|NP_866545.1| type IV prepilin peptidase CpaA [Rhodopirellula baltica SH 1]
gi|32398231|emb|CAD78326.1| similar to type IV prepilin peptidase CpaA [Rhodopirellula baltica
SH 1]
gi|327540754|gb|EGF27321.1| peptidase A24A prepilin type IV [Rhodopirellula baltica WH47]
Length = 185
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 17/179 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
+ + L+ AA+ D +PN ++ + F+ G + + LL
Sbjct: 8 ITENWTIWFVTVVLIVAAVIDGMILKVPNWLTFPFIICGWAHCFIQG-GFPELGYSLLGT 66
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ ++ MG GDVKLL W G + +F + G + + I
Sbjct: 67 FVGMMLLLPLRNVGGMGAGDVKLLAGIGAWCGTMITLKAFAATAIVGGIMAAFMIWKSGA 126
Query: 126 ITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLISYPDSYLFK 168
H F + + ++ +PYGI +++G +I + +
Sbjct: 127 WVKHYAQFWKIMDEWRTIRKPEQLAAIARERKPTMYLLPYGIPMAIGTIIYFAATGQLV 185
>gi|315618952|gb|EFU99535.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli 3431]
Length = 225
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L + G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGFVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|308048083|ref|YP_003911649.1| type 4 prepilin peptidase 1 [Ferrimonas balearica DSM 9799]
gi|307630273|gb|ADN74575.1| type 4 prepilin peptidase 1 [Ferrimonas balearica DSM 9799]
Length = 293
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 21/162 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ A D + ++P+++++ +L LL E + +G
Sbjct: 134 QFLAAWVLTLGLISLAAIDFDTMLLPDQLTLPLLWLGLLVNLNGLFVPLEQAVIGAALGY 193
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL WFG+ P+ L + +I G ++ + +
Sbjct: 194 LSLWSLFQLFKLLTGKEGMGYGDFKLLALFGAWFGY-PALLPVILIASIGGAVVGITLQV 252
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+P+G I +GG I
Sbjct: 253 SGK---------------LGRGKPMPFGPWIVLGGWIYLVWG 279
>gi|124515710|gb|EAY57219.1| putative type IV prepilin peptidase [Leptospirillum rubarum]
Length = 263
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 11/167 (6%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V + +L DL +P+ ++ S LL A+ + L G I
Sbjct: 104 IVLATFFSFALPLSLIDLRHRRLPHSLTWTAGFSGLLLAWSGPERFFYPIGGFLAGFITL 163
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ MG GD + S + G T + L L + ++
Sbjct: 164 GLVSIL-HPKGMGMGDAFWIGSIGTFVGATGVVETLFLSSFFAILSLLPLFLVKKPDSSG 222
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+P K +P+G +S+G ++ D AL ++
Sbjct: 223 VP----------WYKTSLPFGPYLSLGAILVLVDPGHMLEALQSAAS 259
>gi|254038143|ref|ZP_04872201.1| leader peptidase PppA [Escherichia sp. 1_1_43]
gi|226839767|gb|EEH71788.1| leader peptidase PppA [Escherichia sp. 1_1_43]
Length = 269
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|148651966|ref|YP_001279059.1| peptidase A24A domain-containing protein [Psychrobacter sp. PRwf-1]
gi|148571050|gb|ABQ93109.1| peptidase A24A domain protein [Psychrobacter sp. PRwf-1]
Length = 306
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 23/147 (15%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFII 71
L+ + L+ D + +P+ ++ + L+ + L L++G + +
Sbjct: 157 LVFLWLLIALVGIDFETQYLPDNLTYPLAILGLMVNSHSVFVSPSLSIWGLILGYLSLWV 216
Query: 72 ----CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F MG GD KLL + W G + ++LG I+ + +L R
Sbjct: 217 VVKVFYLFTRKQGMGQGDFKLLAALGAWLGPF-MLPFVILLSSVLGTIMGLILLKERR-- 273
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAIS 154
+G ++
Sbjct: 274 ---------------ESQPFAFGPYLA 285
>gi|330811789|ref|YP_004356251.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327379897|gb|AEA71247.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 289
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 21/166 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A+ ++ + L+ +L D ++P+ + + +L L+ F L + + G
Sbjct: 131 HAAMVMVLTWGLLAMSLIDAEHQLLPDTLVLPLLWLGLIINSFGLFVSLNQAMWGAVAGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L + I ++ +
Sbjct: 191 LALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLGAVIGAIVLRL 250
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ +IP+G +++ G I+
Sbjct: 251 ----------------RDAPGSTQIPFGPYLAIAGWIALLWGGQIT 280
>gi|119513253|ref|ZP_01632296.1| Peptidase A24A, prepilin type IV [Nodularia spumigena CCY9414]
gi|119462094|gb|EAW43088.1| Peptidase A24A, prepilin type IV [Nodularia spumigena CCY9414]
Length = 270
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 31/183 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM----DYELIALHL 62
+ + + L+ +L DL + +PN ++ L + +G + + HL
Sbjct: 102 IITVSYWAFCSWLLALSLIDLDTMTLPNVLTKSGLVIGICFQMTVGFFSQGGWTGLVNHL 161
Query: 63 LVGLIVFIICFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
++ ++ ++ F MG GD KL W GW L+ +
Sbjct: 162 MISIVGAVLGLWLFDAIAMVGSIALGKTAMGAGDAKLAAMMGAWLGWKYLLLASFIACFV 221
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
I +L + KIP+G +++G +I+
Sbjct: 222 GVIIGGGAMLLSQQRV----------------GQKIPFGPFLALGAVITVFGGEAILSTY 265
Query: 172 MGL 174
+GL
Sbjct: 266 LGL 268
>gi|320195114|gb|EFW69743.1| leader peptidase PppA [Escherichia coli WV_060327]
Length = 269
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|53726065|ref|YP_104077.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei ATCC
23344]
gi|67643614|ref|ZP_00442359.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei GB8
horse 4]
gi|121598463|ref|YP_991804.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei SAVP1]
gi|124384929|ref|YP_001027296.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei NCTC
10229]
gi|126441037|ref|YP_001060518.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 668]
gi|126449223|ref|YP_001082766.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei NCTC
10247]
gi|166998619|ref|ZP_02264477.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei PRL-20]
gi|167721322|ref|ZP_02404558.1| type IV pilus prepilin peptidase PilD [Burkholderia pseudomallei
DM98]
gi|167817510|ref|ZP_02449190.1| type IV pilus prepilin peptidase PilD [Burkholderia pseudomallei
91]
gi|167904370|ref|ZP_02491575.1| type IV pilus prepilin peptidase PilD [Burkholderia pseudomallei
NCTC 13177]
gi|217425694|ref|ZP_03457184.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 576]
gi|237813902|ref|YP_002898353.1| type IV prepilin leader peptidase [Burkholderia pseudomallei
MSHR346]
gi|254178821|ref|ZP_04885475.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei ATCC
10399]
gi|254180564|ref|ZP_04887162.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 1655]
gi|254202798|ref|ZP_04909161.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei FMH]
gi|254208140|ref|ZP_04914490.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei JHU]
gi|254357656|ref|ZP_04973930.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei
2002721280]
gi|52429488|gb|AAU50081.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei ATCC
23344]
gi|121227273|gb|ABM49791.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei SAVP1]
gi|124292949|gb|ABN02218.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei NCTC
10229]
gi|126220530|gb|ABN84036.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 668]
gi|126242093|gb|ABO05186.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei NCTC
10247]
gi|147747045|gb|EDK54122.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei FMH]
gi|147752034|gb|EDK59101.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei JHU]
gi|148026720|gb|EDK84805.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei
2002721280]
gi|160694735|gb|EDP84743.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei ATCC
10399]
gi|184211103|gb|EDU08146.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 1655]
gi|217391282|gb|EEC31314.1| type IV prepilin leader peptidase [Burkholderia pseudomallei 576]
gi|237506342|gb|ACQ98660.1| type IV prepilin leader peptidase [Burkholderia pseudomallei
MSHR346]
gi|238524990|gb|EEP88420.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei GB8
horse 4]
gi|243065300|gb|EES47486.1| type IV pilus prepilin peptidase PilD [Burkholderia mallei PRL-20]
Length = 304
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 150 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 209
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 210 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 253
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 254 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 304
>gi|258515846|ref|YP_003192068.1| peptidase A24A domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257779551|gb|ACV63445.1| peptidase A24A domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 248
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 16/150 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ I LV AA DL +IP++V + L + FL + L +
Sbjct: 98 TVAVWIFLSALVVAAFIDLEHGIIPDQVVVAALVLGVPVLFLASPYKLISGLTGFAAAGI 157
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ A MGGGDVKL ++ GW G + V + + R
Sbjct: 158 IMLVIALLAPGGMGGGDVKLSAVIGLYLGWPNVLAGLFLAFLSGGLVGIVLLCSGRKK-- 215
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
K+ +P+G +++GG+
Sbjct: 216 --------------RKDHVPFGPYLALGGV 231
>gi|220922526|ref|YP_002497828.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
2060]
gi|219947133|gb|ACL57525.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
2060]
Length = 168
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ L+ P + +AA SDL + IPN +S+ ++ F A L+G+D+ +A H G +
Sbjct: 3 LLSLVFPAIMAYAAASDLLTMRIPNFISVALIVIFFGLAILVGVDWSTVAWHAAAGATML 62
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++CF +A +GGGD KL +T +W G+TP L +L V ++GG++ V L++R
Sbjct: 63 VVCFLMYALGWIGGGDAKLAAATVLWLGFTPVLLDYLLIVGLVGGMMGVLFLSIRRFPLP 122
Query: 130 IPIF-GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
++ + K +PYGIA++ GL YPDS L
Sbjct: 123 AFALTWEWLVRLHDKKAGVPYGIALAAAGLAVYPDSLL 160
>gi|331648756|ref|ZP_08349844.1| leader peptidase PppA [Escherichia coli M605]
gi|330909028|gb|EGH37542.1| leader peptidase (Prepilin peptidase) / N-methyltransferase
[Escherichia coli AA86]
gi|331042503|gb|EGI14645.1| leader peptidase PppA [Escherichia coli M605]
Length = 269
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|113476284|ref|YP_722345.1| type 4 prepilin peptidase 1 [Trichodesmium erythraeum IMS101]
gi|110167332|gb|ABG51872.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Trichodesmium erythraeum IMS101]
Length = 273
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 31/174 (17%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT--------AFLLGMDYELI 58
+ + + L+ ++ DL + +PN ++ L L F + +
Sbjct: 102 ISTLGYWFFFSWLLALSMIDLDTMTLPNPLTQSGLIVGLFFQMLTTFEENFQVNNLVNYL 161
Query: 59 ALHLLVGLIVFIICFCFFAFN-------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ ++ ++ + F +MGGGD KL W GW L+ A+
Sbjct: 162 IIGIIGAVVGLWLFDLISIFGSIAFGQTVMGGGDAKLAAMIGAWLGWKYLLLTCFLACAM 221
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ I + + IP+G ++MG ++
Sbjct: 222 GALVGGGAIAL----------------RLLDRRQPIPFGPFLAMGAGLTVIWGD 259
>gi|295399387|ref|ZP_06809369.1| peptidase A24A domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|294978853|gb|EFG54449.1| peptidase A24A domain protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 254
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 16/157 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
V L+ +SD+ MIP++V +V FL + AL
Sbjct: 101 ELIVCWTLISLLMIIFVSDVRYMMIPDKVLLVFAIIFLFERLFIPFLSWRDALIGAAAGF 160
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + + MGGGD+KL GW L+F F I + + +
Sbjct: 161 LLLFLIAVISKGGMGGGDIKLFALLGFVLGWKTVLLAFFFSTIYGTAIGLIGMALGK--- 217
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ +P+G AI +G L +Y
Sbjct: 218 -------------VRRREPMPFGPAIVLGSLTAYFFG 241
>gi|254038496|ref|ZP_04872552.1| type 4 prepilin peptidase [Escherichia sp. 1_1_43]
gi|226839002|gb|EEH71025.1| type 4 prepilin peptidase [Escherichia sp. 1_1_43]
Length = 225
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ + L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLFWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|237728657|ref|ZP_04559138.1| type III leader peptidase [Citrobacter sp. 30_2]
gi|226909279|gb|EEH95197.1| type III leader peptidase [Citrobacter sp. 30_2]
Length = 155
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 20/163 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
+ LI + DL + ++P++ + +L L+ + G
Sbjct: 3 IDLPFLLIYVSLSGLLLVHDLRTGLLPDKFTCPLLWGGLIYHQCCRPAQLSDALWGAVAG 62
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
VF + + + +G GDVK L + W W L L + + + +
Sbjct: 63 YGVFALFYWGYRLICRQEGLGFGDVKFLAALGAWHRWESLPLLVLLAAGMACCLTGISCV 122
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
KN +P+G ++ G + S
Sbjct: 123 RYGKQVL---------------KNPLPFGPYLAAAGFVIGLLS 150
>gi|152972229|ref|YP_001337375.1| bifunctional prepilin peptidase: leader peptidase;
N-methyltransferase; part of general secretion pathway
(GSP) [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|150957078|gb|ABR79108.1| bifunctional prepilin peptidase: leader peptidase;
N-methyltransferase; part of general secretion pathway
(GSP) [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
Length = 161
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 15/159 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLV 64
+ L V DL ++P+R + +L S LL +
Sbjct: 2 LAALPFLLCYSGLTVALCHQDLRHGLLPDRYTCPLLWSGLLFYLCLAPHQLHDAVWGAIG 61
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + + +G GD+K L + W GW L + G +
Sbjct: 62 GYLSLAAIYWLYRGIRGYEGLGYGDIKYLAALGAWHGWRLLPQLVLVASLLAGIAWAGAG 121
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L + N +P+G ++ G
Sbjct: 122 LYASCGRKSK----------WGRSNPLPFGPFLAAAGFW 150
>gi|218555880|ref|YP_002388793.1| putative bifunctional prepilin peptidase HopD: leader peptidase;
methyl transferase [Escherichia coli IAI1]
gi|218362648|emb|CAR00274.1| putative bifunctional prepilin peptidase HopD: leader peptidase;
methyl transferase (General Secretory Pathway)
[Escherichia coli IAI1]
Length = 155
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVF 69
++ V L D ++P+R + +L S LL + ++G F
Sbjct: 7 FLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W W + G + V +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWPFLPRLVFLAASFACGAVVVGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVV 146
>gi|326204949|ref|ZP_08194801.1| Prepilin peptidase [Clostridium papyrosolvens DSM 2782]
gi|325984878|gb|EGD45722.1| Prepilin peptidase [Clostridium papyrosolvens DSM 2782]
Length = 265
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 30/178 (16%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--------- 51
+K S V + L+ A D +IPN I L S L
Sbjct: 92 LKYSLTVEFVAMALLSCILICIAFIDAEYRIIPNGFIITGLISGLALFLYNLFYTVDMFR 151
Query: 52 ----GMDYELIALHLLVGLIVFIICFCFFAFN-IMGGGDVKLLTSTAVWFGWTPSFLSFL 106
A+ +V ++ + + MG GD+KL ++ GW + +S +
Sbjct: 152 DRVWFNPILGFAVGTGFLFMVSLVGMLVYKSDDAMGMGDIKLYAVIGLFLGWRMTIVSLM 211
Query: 107 FFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
V ++ + K+ I +G I++G I+
Sbjct: 212 LSVFSAAIGCVFMMILKKN----------------NRKSTIAFGPYIAVGTFITIICG 253
>gi|2959753|emb|CAA68830.1| orf2 [Escherichia coli]
Length = 238
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 21/161 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ A + L+ A+ D +A++P+ +++ +L LL + + E + + G
Sbjct: 92 LTLAAAWLFISMLLVLAVIDCHTALLPDVLTLPLLWLGLLFSLQRSVVTLEEAVVGAVSG 151
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F F +G GD KL + W GW + S L F ++ G I++V +
Sbjct: 152 YLCLWGLYWLFRFATGREGLGYGDFKLAAALGAWMGWQ-ALPSILLFASVSGLIVTVLL- 209
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +P+G +++ G+ +
Sbjct: 210 --------------RIVTATDFTRPLPFGPWLALSGVCHFL 236
>gi|172058129|ref|YP_001814589.1| peptidase A24A domain-containing protein [Exiguobacterium sibiricum
255-15]
gi|171990650|gb|ACB61572.1| peptidase A24A domain protein [Exiguobacterium sibiricum 255-15]
Length = 252
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
+SDL +IPN++ + L L+ +L ++ + + + MG
Sbjct: 116 MSDLAYMLIPNKILLFFLPISLIVRYLSPLENWYNPIIGGFVGFFLLFVIFLASRQGMGA 175
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKL ++ G ++ LF A +G I+ + +L + +
Sbjct: 176 GDVKLFGVLGIFLGPLHVVIA-LFVSAFVGSIIGLGLLGFKRV---------------ER 219
Query: 144 KNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K IP+ +I++G L++Y + + + L
Sbjct: 220 KQPIPFVPSIAVGTLLTYYFADDWVKLYLDL 250
>gi|218550597|ref|YP_002384388.1| bifunctional prepilin peptidase HopD: leader peptidase; methyl
transferase [Escherichia fergusonii ATCC 35469]
gi|218358138|emb|CAQ90785.1| putative bifunctional prepilin peptidase HopD: leader peptidase;
methyl transferase (General Secretory Pathway)
[Escherichia fergusonii ATCC 35469]
Length = 157
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-LTAFLLGMDYELIALHLLVGLIVF 69
+ D ++P+R + +L S L + ++G F
Sbjct: 7 FLTLYACLTALLFFWDAKHGLLPDRFTCPLLWSGLMFYQICHPDNLADALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W W + G + + +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWAFLPRLVFLAASFACGAVVIGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPYLATAGFVV 146
>gi|75994489|ref|YP_325603.1| type II secretion protein [Escherichia coli O157:H7 EDL933]
gi|168750729|ref|ZP_02775751.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4113]
gi|168757319|ref|ZP_02782326.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4401]
gi|168763005|ref|ZP_02788012.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4501]
gi|168769217|ref|ZP_02794224.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4486]
gi|168769327|ref|ZP_02794334.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4486]
gi|168776700|ref|ZP_02801707.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4196]
gi|168783058|ref|ZP_02808065.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4076]
gi|168789916|ref|ZP_02814923.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC869]
gi|168802562|ref|ZP_02827569.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC508]
gi|195940102|ref|ZP_03085484.1| EptN [Escherichia coli O157:H7 str. EC4024]
gi|208811294|ref|ZP_03253054.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Escherichia coli O157:H7 str. EC4206]
gi|208817395|ref|ZP_03258424.1| bacterial Peptidase A24 N- domain protein [Escherichia coli O157:H7
str. EC4045]
gi|208823386|ref|ZP_03263703.1| bacterial Peptidase A24 N- domain protein [Escherichia coli O157:H7
str. EC4042]
gi|217329902|ref|ZP_03445977.1| bacterial Peptidase A24 N- domain protein [Escherichia coli O157:H7
str. TW14588]
gi|254667461|ref|YP_003082147.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
gi|261225645|ref|ZP_05939926.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000]
gi|261257900|ref|ZP_05950433.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK966]
gi|3822157|gb|AAC70111.1| type II secretion protein [Escherichia coli O157:H7]
gi|187767976|gb|EDU31820.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4196]
gi|188015135|gb|EDU53257.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4113]
gi|188999552|gb|EDU68538.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4076]
gi|189355649|gb|EDU74068.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4401]
gi|189361632|gb|EDU80051.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4486]
gi|189361682|gb|EDU80101.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4486]
gi|189366732|gb|EDU85148.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC4501]
gi|189370531|gb|EDU88947.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC869]
gi|189375468|gb|EDU93884.1| bacterial Peptidase A24 N- domain family [Escherichia coli O157:H7
str. EC508]
gi|208729924|gb|EDZ79141.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Escherichia coli O157:H7 str. EC4206]
gi|208730572|gb|EDZ79271.1| bacterial Peptidase A24 N- domain protein [Escherichia coli O157:H7
str. EC4045]
gi|208736981|gb|EDZ84666.1| bacterial Peptidase A24 N- domain protein [Escherichia coli O157:H7
str. EC4042]
gi|217317133|gb|EEC25566.1| bacterial Peptidase A24 N- domain protein [Escherichia coli O157:H7
str. TW14588]
gi|254595813|gb|ACT75173.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
gi|320187895|gb|EFW62564.1| Prepilin peptidase [Escherichia coli O157:H7 str. EC1212]
gi|326337147|gb|EGD60983.1| Prepilin peptidase [Escherichia coli O157:H7 str. 1125]
gi|326347645|gb|EGD71363.1| Prepilin peptidase [Escherichia coli O157:H7 str. 1044]
Length = 277
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ A + L+ A+ D +A++P+ +++ +L LL + G+ E + + G
Sbjct: 131 LTLAAAWLFISMLLVLAVIDCHTALLPDVLTLPLLWLGLLFSLQRGVVTLEEAVVGAVSG 190
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F F +G GD KL + W GW + S L F ++ G I++V +
Sbjct: 191 YLCLWGLYWLFRFATGREGLGYGDFKLAAALGAWMGWQ-ALPSILLFASVSGLIVTVLL- 248
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +P+G +++ G+ +
Sbjct: 249 --------------RIVTATDFTRPLPFGPWLALSGVCHFL 275
>gi|209395581|ref|YP_002268508.1| bacterial Peptidase A24 N- domain protein [Escherichia coli O157:H7
str. EC4115]
gi|209157036|gb|ACI34470.1| bacterial Peptidase A24 N- domain protein [Escherichia coli O157:H7
str. EC4115]
Length = 274
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ A + L+ A+ D +A++P+ +++ +L LL + G+ E + + G
Sbjct: 128 LTLAAAWLFISMLLVLAVIDCHTALLPDVLTLPLLWLGLLFSLQRGVVTLEEAVVGAVSG 187
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F F +G GD KL + W GW + S L F ++ G I++V +
Sbjct: 188 YLCLWGLYWLFRFATGREGLGYGDFKLAAALGAWMGWQ-ALPSILLFASVSGLIVTVLL- 245
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +P+G +++ G+ +
Sbjct: 246 --------------RIVTATDFTRPLPFGPWLALSGVCHFL 272
>gi|256004345|ref|ZP_05429326.1| peptidase A24A domain protein [Clostridium thermocellum DSM 2360]
gi|255991629|gb|EEU01730.1| peptidase A24A domain protein [Clostridium thermocellum DSM 2360]
gi|316940397|gb|ADU74431.1| Prepilin peptidase [Clostridium thermocellum DSM 1313]
Length = 281
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 55/175 (31%), Gaps = 31/175 (17%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-------------GMDYELIALH 61
L+ DL +IPN++ + L +L +
Sbjct: 120 LMSVLIAVFFIDLDHMIIPNKLVVAALVGGVLPFVYNIFRPMDIYVDRKWWNPLLGAFIG 179
Query: 62 LLVGLIVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+V I+ + + MGGGDVKL ++ GW + ++ G + V +
Sbjct: 180 FGFLLLVAIVGYLVYKTDEAMGGGDVKLFAPIGLFLGWKMTIVALFISFVSAGIVSIVLL 239
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMGL 174
L + + +G I MG +Y L + L L
Sbjct: 240 LLKKKERRSTFV----------------FGPFIVMGTFFTYLFGWELLEWYLSTL 278
>gi|330002296|ref|ZP_08304290.1| putative type IV prepilin leader peptidase [Klebsiella sp. MS 92-3]
gi|328537369|gb|EGF63619.1| putative type IV prepilin leader peptidase [Klebsiella sp. MS 92-3]
Length = 161
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 15/159 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLV 64
+ L V DL ++P+R + +L S LL +
Sbjct: 2 LAALPFLLCYSGLTVALCHQDLRHGLLPDRYTCPLLWSGLLFYLCLAPHQLHDAVWGAIA 61
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + + +G GD+K L + W GW L + G +
Sbjct: 62 GYLSLAAIYWLYRGIRGYEGLGYGDIKYLAALGAWHGWRLLPQLVLVASLLAGIAWAGAG 121
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L + N +P+G ++ G
Sbjct: 122 LYASCGGRSK----------WRRSNPLPFGPFLAAAGFW 150
>gi|256020681|ref|ZP_05434546.1| putative bifunctional prepilin peptidase HopD: leader peptidase;
methyl transferase (General Secretory Pathway) [Shigella
sp. D9]
gi|293453640|ref|ZP_06664059.1| leader peptidase hopD [Escherichia coli B088]
gi|300815468|ref|ZP_07095693.1| peptidase, A24 family protein [Escherichia coli MS 107-1]
gi|300822875|ref|ZP_07103011.1| peptidase, A24 family protein [Escherichia coli MS 119-7]
gi|309794597|ref|ZP_07689019.1| peptidase, A24 family protein [Escherichia coli MS 145-7]
gi|331670151|ref|ZP_08370990.1| leader peptidase HopD [Escherichia coli TA271]
gi|331679391|ref|ZP_08380061.1| leader peptidase HopD [Escherichia coli H591]
gi|332281878|ref|ZP_08394291.1| peptidase [Shigella sp. D9]
gi|291321766|gb|EFE61197.1| leader peptidase hopD [Escherichia coli B088]
gi|300524641|gb|EFK45710.1| peptidase, A24 family protein [Escherichia coli MS 119-7]
gi|300532360|gb|EFK53422.1| peptidase, A24 family protein [Escherichia coli MS 107-1]
gi|308121647|gb|EFO58909.1| peptidase, A24 family protein [Escherichia coli MS 145-7]
gi|324116288|gb|EGC10208.1| type IV leader peptidase [Escherichia coli E1167]
gi|331062213|gb|EGI34133.1| leader peptidase HopD [Escherichia coli TA271]
gi|331072563|gb|EGI43888.1| leader peptidase HopD [Escherichia coli H591]
gi|332104230|gb|EGJ07576.1| peptidase [Shigella sp. D9]
Length = 155
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVF 69
++ V L D ++P+R + +L S LL + ++G F
Sbjct: 7 FLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W WT + G + V +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVV 146
>gi|309389119|gb|ADO76999.1| Prepilin peptidase [Halanaerobium praevalens DSM 2228]
Length = 247
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 16/162 (9%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
S ++ + LI L+ + D ++P+++++ LG L+ +F L +L +
Sbjct: 91 SDLIILSAGLIFSSLLIVLTMIDFDHQILPDKLTLGGLGVGLIFSFFRSDISFLFSLSGV 150
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + + + MGGGD+K++ + G + S I I++
Sbjct: 151 IAAGGLLFSIAYLSKGGMGGGDIKMMAMVGSFAGPIIAVSSIFLGAVIALIAHLPGIVSG 210
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ MK K+P+G +++ + + S
Sbjct: 211 KT----------------GMKTKLPFGPFLALASFLFWIWSE 236
>gi|218706593|ref|YP_002414112.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli UMN026]
gi|293406582|ref|ZP_06650508.1| leader peptidase pppA [Escherichia coli FVEC1412]
gi|298382323|ref|ZP_06991920.1| leader peptidase pppA [Escherichia coli FVEC1302]
gi|300900299|ref|ZP_07118478.1| bacterial Peptidase A24 protein [Escherichia coli MS 198-1]
gi|331664579|ref|ZP_08365485.1| leader peptidase PppA [Escherichia coli TA143]
gi|218433690|emb|CAR14605.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli UMN026]
gi|291426588|gb|EFE99620.1| leader peptidase pppA [Escherichia coli FVEC1412]
gi|298277463|gb|EFI18979.1| leader peptidase pppA [Escherichia coli FVEC1302]
gi|300356189|gb|EFJ72059.1| bacterial Peptidase A24 protein [Escherichia coli MS 198-1]
gi|331058510|gb|EGI30491.1| leader peptidase PppA [Escherichia coli TA143]
Length = 269
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTPLPFGPCLSLGGIATLYLQALF 269
>gi|283779852|ref|YP_003370607.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
gi|283438305|gb|ADB16747.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
Length = 189
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 17/182 (9%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
S M + L+ AA+ D F +PN ++ + S + + +E + L
Sbjct: 9 GSAMAEHWTVWLVTIVLILAAVIDGFELKVPNWITFPFIISGWIYSV-AAFGWEGLGWSL 67
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ ++ + ++ MG GDVKLL W T +F +F + + +L
Sbjct: 68 VGTVVGLALLLPAYSIGGMGAGDVKLLAGVGAWMYGTHTFYAFCASAVVGALCAVIMVLA 127
Query: 123 VRMITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLISYPDSYL 166
R H F + + + ++ N +PYGI I++G + + +
Sbjct: 128 KRAWKKHSDQFWLILNEIMVIGNPEKLAVIAAKRKPSMLLLPYGIPIAIGTIGYFLVRGM 187
Query: 167 FK 168
Sbjct: 188 LV 189
>gi|126659290|ref|ZP_01730426.1| type 4 prepilin peptidase [Cyanothece sp. CCY0110]
gi|126619372|gb|EAZ90105.1| type 4 prepilin peptidase [Cyanothece sp. CCY0110]
Length = 269
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
+ + + + LV ++ D + +P ++ L L+ ++G + +L
Sbjct: 98 YQFTLVTLGYWVLISWLVTLSMIDFDTMTLPGVLTKSGLVLGLIFQGIIGWQVSELPEYL 157
Query: 63 LVGLIVFIICFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ ++ + F +GGGD KL W GW ++ +
Sbjct: 158 MTSVVSAVSGIWLFDLIGLGGTFVLGQQALGGGDSKLAAMLGAWLGWKYLLVTSFLACLV 217
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
++ ++ P+G +++G ++S
Sbjct: 218 GSVFGMGGMILG----------------FIDRRHPFPFGPFLALGAMLSLFWGETIVSTY 261
Query: 172 MGL 174
+ L
Sbjct: 262 IRL 264
>gi|255597443|ref|XP_002536775.1| conserved hypothetical protein [Ricinus communis]
gi|223518589|gb|EEF25609.1| conserved hypothetical protein [Ricinus communis]
Length = 169
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ A+ + L A+ D+ + +P R + + F A ++ + H+ +
Sbjct: 3 LLSLALRAVALAVLFSLAVVDVRARRLPTRSVLALGLLFFADALVVHRSASDVLSHVALA 62
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+VF IC FA MGGGD KL + +W G S+ + + + G ++++ L +
Sbjct: 63 GVVFAICAVLFALGWMGGGDAKLAAAIFLWAGLPLSWPALVLIS-VSGTVVALVSLATQR 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ + F +PYG+A++ GG F +
Sbjct: 122 LDPQHRARAVRALAMFSGTRGVPYGVALAAGGTAVIGLPAWFSLVA 167
>gi|23098072|ref|NP_691538.1| leader peptide processing enzyme [Oceanobacillus iheyensis HTE831]
gi|22776297|dbj|BAC12573.1| leader peptide processing enzyme (late competence protein)
[Oceanobacillus iheyensis HTE831]
Length = 251
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 16/143 (11%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
+SD +IPN++ + L F++ LL +D I + MG
Sbjct: 114 CISDFIYMVIPNKLLLFFLPIFIILRLLLPLDPWWSMFTGAAIGFGIIFLIILISRGGMG 173
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GD+KLL + G L+F I I V +
Sbjct: 174 AGDMKLLGLAGIVLGVEKIILAFFLACIIGSVISIVLLSVH----------------LIQ 217
Query: 143 MKNKIPYGIAISMGGLISYPDSY 165
P+G I++G LISY
Sbjct: 218 RNKPFPFGPFIAIGILISYFYGD 240
>gi|239814524|ref|YP_002943434.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110]
gi|239801101|gb|ACS18168.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110]
Length = 194
Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 17/162 (10%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI-VFIICF 73
LV AA+SD IPN ++ + ++ H L GL F I
Sbjct: 23 LFVLLVMAAVSDARFYRIPNWLTFGGMAFAIIYGAFAARTPMTGLQHALGGLGTGFAIML 82
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP-- 131
F+ IMG GDVKL+ + G + + LF G + R + + +
Sbjct: 83 PFYVLGIMGAGDVKLMAMVGAFIGPYQTLEAILFTCIAGGFAAVAVAIHRRRLGHMLANV 142
Query: 132 --------------IFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + K+PYGI I +G ++
Sbjct: 143 KDAAQGIVVSGIAGVRPNGTIDTRQSIGKLPYGICICVGTVV 184
>gi|221233122|ref|YP_002515558.1| type II secretory pathway, prepilin signal peptidase [Caulobacter
crescentus NA1000]
gi|220962294|gb|ACL93650.1| type II secretory pathway, prepilin signal peptidase [Caulobacter
crescentus NA1000]
Length = 253
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLI 67
+ + + L+ A D +P+R+++ ++ +G + + VG
Sbjct: 101 ILLTALMGWSLLLIATIDTEHLWLPDRLTLPFGALGVIATLAIGEVPVWTPLVGAAVGFG 160
Query: 68 VFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F+ MGGGD +LL + W GW S L + + G +++ V
Sbjct: 161 GLALIAWLYKTVRGFDGMGGGDPRLLGAIGAWVGWQG-LPSVLVWACVAGLSVAIAQTLV 219
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
R F ++P+G +++G +++ L
Sbjct: 220 RRR--------------FSGDQQLPFGAFLAIGAWLTWLWGPL 248
>gi|299067805|emb|CBJ39016.1| putative prepilin peptidase transmembrane protein (cpaA) [Ralstonia
solanacearum CMR15]
Length = 172
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 12/164 (7%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L +V AA+ D+ + IPNR+ L + L+ + L +
Sbjct: 5 TALANLSLLVLVVTAAVHDVRTRRIPNRLVAAGLAAALIAQCAVLGPVAGALAWLGGAAV 64
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+C + + MG GDVKL+ + + G + + GG+L+V ++ +
Sbjct: 65 GMGLCIGLYLLHGMGAGDVKLMGAIGAFTGPLAALH-VGLASCVAGGVLAVAMVALDARK 123
Query: 128 NHIPIFGMFVPKSFLMKNK-----------IPYGIAISMGGLIS 160
N P + +PY +A + G L+
Sbjct: 124 NMGMALLFSAPVADRQTQPKDSVPRGNAIRLPYAVAFAAGTLLV 167
>gi|315297660|gb|EFU56937.1| bacterial Peptidase A24 protein [Escherichia coli MS 16-3]
Length = 269
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|302392518|ref|YP_003828338.1| peptidase A24A domain protein [Acetohalobium arabaticum DSM 5501]
gi|302204595|gb|ADL13273.1| peptidase A24A domain protein [Acetohalobium arabaticum DSM 5501]
Length = 254
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 16/162 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ ++ L+ AA+ DL +IPNR++ + + L+ + L AL LV
Sbjct: 96 IQFMIYAFLSSLLLTAAVIDLKHQIIPNRITYFGIITGLILSLLFKHITIRSALLGLVIP 155
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
F++ +G GDVK + + G + +S +I+G ++ + ++ + +
Sbjct: 156 AGFLLLIAVITKGGLGMGDVKFIAMIGTYLGAKYTLISIFI-GSIVGSVIGLALIGLGVK 214
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
K+++P+G +++G L+ +
Sbjct: 215 ---------------SRKDRVPFGPLLALGNLLMILYGQVIM 241
>gi|261339193|ref|ZP_05967051.1| hypothetical protein ENTCAN_05419 [Enterobacter cancerogenus ATCC
35316]
gi|288319040|gb|EFC57978.1| type IV pilus prepilin peptidase PilD [Enterobacter cancerogenus
ATCC 35316]
Length = 265
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 23/154 (14%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFI 70
+ L+ A+ D ++P+ ++ +L + LL G+ + G +
Sbjct: 120 LWLMAAFLLPLAMIDWRYQLLPDCLTQPLLWAGLLVHACGTGLPLRDALFGAVAGYLSLW 179
Query: 71 ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F +G GD KLL + W GW + + A+ G I +
Sbjct: 180 LLYWAFRLTTGREGLGYGDFKLLAALGAWCGWQ-ALPTIELLAALSGIIGYLVFAAQNKN 238
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
I +G ++ G+
Sbjct: 239 -----------------TQTIAFGPYLAFAGIAV 255
>gi|293412342|ref|ZP_06655065.1| predicted protein [Escherichia coli B354]
gi|291469113|gb|EFF11604.1| predicted protein [Escherichia coli B354]
Length = 269
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDNQWLPDVFTQGILWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|110643203|ref|YP_670933.1| putative prepilin peptidase [Escherichia coli 536]
gi|47155038|emb|CAE85237.1| putative prepilin peptidase A [Escherichia coli]
gi|110344795|gb|ABG71032.1| putative prepilin peptidase [Escherichia coli 536]
Length = 269
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|237755953|ref|ZP_04584541.1| bacterial Peptidase A24 N-terminal domain family protein
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237691878|gb|EEP60898.1| bacterial Peptidase A24 N-terminal domain family protein
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 244
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 24/164 (14%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMD 54
+K V C++ + DL +IP+ ++ L + A
Sbjct: 95 LKFGFTVNFVFMFYFVACMIALSFIDLEFKIIPDEINFSGLFMGFVYASYKAYEIRDFHP 154
Query: 55 YELIALHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+ VG F+ +G GDVKLL + GW + + F
Sbjct: 155 LTDALIGAAVGAGFLYALALFYLKVRNIEALGFGDVKLLAFIGSYVGWFGALFTIFFGSL 214
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
+ F+ + +IP+G ++
Sbjct: 215 LGLLGSVFFMKMYKTDDLSKL--------------EIPFGPFLA 244
>gi|323188607|gb|EFZ73892.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli RN587/1]
Length = 269
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGMATLYLQALF 269
>gi|323966496|gb|EGB61929.1| peptidase A24 domain-containing protein [Escherichia coli M863]
gi|327251748|gb|EGE63434.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli STEC_7v]
Length = 269
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWVQQSPLTLQDAVTGVLVGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F I +G GDV L + W G S + + G I +V
Sbjct: 186 ITFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 -----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|126443602|ref|YP_001064073.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
gi|217424146|ref|ZP_03455645.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
gi|237508476|ref|ZP_04521191.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
MSHR346]
gi|126223093|gb|ABN86598.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
gi|217392611|gb|EEC32634.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
gi|235000681|gb|EEP50105.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
MSHR346]
Length = 204
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L V AA DL S IPNR+ + L L+ L + A L
Sbjct: 35 IPLCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAG 94
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F+ M GDVKL+ + W G T + ++GG ++ ++ R +
Sbjct: 95 LLLPFYLVRGMAAGDVKLMLAIGAWVGPTLALH-IALATFVVGGAWALAVVARRGRFRKL 153
Query: 131 PIF---------------GMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+PYG+AI++G L +
Sbjct: 154 LANLRHLFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIGTLGVLFAAA 203
>gi|322834636|ref|YP_004214663.1| Prepilin peptidase [Rahnella sp. Y9602]
gi|321169837|gb|ADW75536.1| Prepilin peptidase [Rahnella sp. Y9602]
Length = 276
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 13/162 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
+ F + L + D ++P+ + ++L S LL + + + ++
Sbjct: 118 IQICCFFLYFCLLYSLTVIDFNHLILPDSLVSLLLWSGLLCSVLGITDIGPRSAICGAVI 177
Query: 65 GLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V + +G GDVKL+ + VW G ++ A + +
Sbjct: 178 IWLVLYAVMAAYEKWRGREGLGYGDVKLMAAITVWVGMEKIPELIMWSAASGIMVYVLCT 237
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + K+ IP+G +ISM GL+ +
Sbjct: 238 VLNQR-------RTLDENHPAAEKHYIPFGPSISMAGLVIFF 272
>gi|283835739|ref|ZP_06355480.1| hypothetical protein CIT292_10131 [Citrobacter youngae ATCC 29220]
gi|291068418|gb|EFE06527.1| prepilin peptidase [Citrobacter youngae ATCC 29220]
Length = 155
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 23/164 (14%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIAL 60
S + F ++L+ L+ + DL + ++P++ + +L S L+
Sbjct: 1 MYSDLPFLLIYLVLSGLLL---VQDLRTGLLPDKFTCPLLWSGLIYHQCCRPAQLSDALW 57
Query: 61 HLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+ G VF + + + +G GDVK L + W W L L ++ +
Sbjct: 58 GAVAGYGVFALFYWGYRLIRQHEGLGFGDVKFLAALGAWHQWESLPLLVLLAASLASCMT 117
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + KN +P+G ++ G I
Sbjct: 118 GLAWVKQGRKVL---------------KNPLPFGPYLAAAGFII 146
>gi|262045179|ref|ZP_06018206.1| leader peptidase HopD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037499|gb|EEW38743.1| leader peptidase HopD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 161
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 15/159 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLV 64
+ L V DL ++P+R + +L S LL +
Sbjct: 2 LAALPFLLCYSGLTVALCHQDLRHGLLPDRYTCPLLWSGLLFYLCLAPHQLHDAVWGAIA 61
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + + +G GD+K L + W GW L + G
Sbjct: 62 GYLSLAAIYWLYRGIRGYEGLGYGDIKYLAALGAWHGWRLLPQLVLVASLLAGIAWVGAG 121
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L + N +P+G ++ G
Sbjct: 122 LYASCGRKSK----------WGRSNPLPFGPFLAAAGFW 150
>gi|238896818|ref|YP_002921563.1| bifunctional prepilin leader peptidase and N-methyltransferase
[Klebsiella pneumoniae NTUH-K2044]
gi|238549145|dbj|BAH65496.1| bifunctional prepilin leader peptidase and N-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 161
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 15/159 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLV 64
+ L V DL ++P+R + +L S LL +
Sbjct: 2 LAALPFLLCYSGLTVALCHQDLRHGLLPDRYTCPLLWSGLLFYLCLAPHQLHDAVWGAIA 61
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + + + +G GD+K L + W GW L + G +
Sbjct: 62 GYLSLAAIYWLYRGIRGYEGLGYGDIKYLAALGAWHGWRLLPQLVLVASLLAGIAWAGAG 121
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L + N +P+G ++ G
Sbjct: 122 LYASCGRKSK----------WGRSNPLPFGPFLAAAGFW 150
>gi|169827250|ref|YP_001697408.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Lysinibacillus sphaericus C3-41]
gi|168991738|gb|ACA39278.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
(Late competence protein comC) [Lysinibacillus
sphaericus C3-41]
Length = 248
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ V L LV +SD +IP+++ + L ++ L + + L LVG
Sbjct: 96 MEFIVALSFISLLVIIVVSDFTYLLIPDKILLFFLPILVIGRVLSPLTPWWDSLLGSLVG 155
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ MGGGD+KL + G + L+ I + V +L +
Sbjct: 156 FGILYSIAVLSK-GGMGGGDIKLFFLIGLVLGTIHTLLTLFLAAIIGMIVGIVVLLKRKQ 214
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K IP+G +I++ I Y F +G
Sbjct: 215 ----------------GRKTPIPFGPSIALAANIVYFYGDSFIKWYLG 246
>gi|17228810|ref|NP_485358.1| type 4 prepilin peptidase [Nostoc sp. PCC 7120]
gi|17130662|dbj|BAB73272.1| type 4 prepilin peptidase [Nostoc sp. PCC 7120]
Length = 269
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 30/182 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM----DYELIALHL 62
+ + + L+ +L DL + +PN ++ L L+ ++G + HL
Sbjct: 102 ILTLGYWTFCGWLLALSLIDLDTMTLPNPLTKSGLVLGLVFQMIVGYAADPTLSGLIRHL 161
Query: 63 LVGLIVFIICFCFF----------AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
++G++ ++ F MG GD KL W GW L+ L +
Sbjct: 162 MMGIVGAVLGLWLFEAIALLGVVFQKEAMGAGDAKLAAMMGAWLGWRYLLLAGLIACTLG 221
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ IL + KIP+G ++ G LI+ A +
Sbjct: 222 ALVGVGAILLSKRKW----------------GQKIPFGPFLASGALITLFGGQPILSAYL 265
Query: 173 GL 174
L
Sbjct: 266 QL 267
>gi|215488291|ref|YP_002330722.1| bifunctional prepilin leader peptidase/methylase [Escherichia coli
O127:H6 str. E2348/69]
gi|312968703|ref|ZP_07782912.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli 2362-75]
gi|215266363|emb|CAS10800.1| bifunctional prepilin leader peptidase/methylase [Escherichia coli
O127:H6 str. E2348/69]
gi|312286921|gb|EFR14832.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli 2362-75]
Length = 269
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|149919307|ref|ZP_01907789.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Plesiocystis pacifica SIR-1]
gi|149819807|gb|EDM79231.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Plesiocystis pacifica SIR-1]
Length = 305
Score = 65.3 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 18/170 (10%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE----LIALH 61
++ V+ LV +DL +IPN V + M G L+ A +
Sbjct: 117 LLAWQVWFFFCLALVVITFTDLDVWIIPNEVVLPMAGVGLVLACWQPELIGVETVPAVIA 176
Query: 62 LLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
L GL + + +G GD KLL + G + L A+ G I+S
Sbjct: 177 GLSGLGLVAGIRWIYLKWRDIEAIGLGDGKLLLMVGFFGGP-MAIAWTLGAGALQGLIVS 235
Query: 118 VFILTVRMITNHI---------PIFGMFVPKSFLMKNKIPYGIAISMGGL 158
V +L + P G P + +M ++P+G +++ L
Sbjct: 236 VPMLLRGETIANTDLQDVHGDDPELGEEDPDAGVMGQRVPFGPFLALAAL 285
>gi|5821176|dbj|BAA83726.1| prepilin peptidase [Escherichia coli]
gi|15207776|dbj|BAB62907.1| CofP [Escherichia coli]
Length = 273
Score = 65.3 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGLIVFI----ICFCF 75
A+ D ++P+ + +ML LL A + + + + I +
Sbjct: 128 LAVIDFDHLLLPDSLVYIMLWGGLLAAAFELSPITLKDAVISICGTWITLSTIVQLFIFI 187
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
+G GD+KL+ + A W GW + I G V + ++ + +
Sbjct: 188 RKKEGLGAGDIKLICALAAWIGWYNIPFLLVISSIIGG----VMFINIKRRFDCGYDGNI 243
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYP 162
IP+G AIS+ G + Y
Sbjct: 244 KNCHV------IPFGPAISISGFVIYL 264
>gi|169831129|ref|YP_001717111.1| peptidase A24A domain-containing protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169637973|gb|ACA59479.1| peptidase A24A domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 254
Score = 65.3 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ A L DL +IP+RV + L L L L +G +F++
Sbjct: 107 WALFAVLLIATLIDLRHGIIPDRVVLAGLVLGLPLVALQSWAALLWGAAAFLGAGLFMLA 166
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ MGGGD+KL ++ G L+ G + + + T R
Sbjct: 167 IAVISRGGMGGGDIKLAALMGLYLGPAGVALALFLAFLAGGTVAVLLLATGRK------- 219
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K+ +P+G +++GG+++ GL
Sbjct: 220 ---------GRKDPVPFGPYLALGGIVAALWGREIISWYFGL 252
>gi|167037484|ref|YP_001665062.1| peptidase A24A domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040146|ref|YP_001663131.1| peptidase A24A domain-containing protein [Thermoanaerobacter sp.
X514]
gi|256752524|ref|ZP_05493380.1| peptidase A24A domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914230|ref|ZP_07131546.1| Prepilin peptidase [Thermoanaerobacter sp. X561]
gi|307724535|ref|YP_003904286.1| Prepilin peptidase [Thermoanaerobacter sp. X513]
gi|320115898|ref|YP_004186057.1| Prepilin peptidase [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166854386|gb|ABY92795.1| peptidase A24A domain protein [Thermoanaerobacter sp. X514]
gi|166856318|gb|ABY94726.1| peptidase A24A domain protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748590|gb|EEU61638.1| peptidase A24A domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889165|gb|EFK84311.1| Prepilin peptidase [Thermoanaerobacter sp. X561]
gi|307581596|gb|ADN54995.1| Prepilin peptidase [Thermoanaerobacter sp. X513]
gi|319928989|gb|ADV79674.1| Prepilin peptidase [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 252
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ L+ + D+ ++PN++ +V ++ L+ + + LV
Sbjct: 100 AFSYMFLASILIAVSFIDIEHRIVPNKIILVGFIGGIIFRVLMYNYGFIDYIMGLVLGGG 159
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ + MGGGD+KL+ + GW + L LF I+G + V ++ +++
Sbjct: 160 ILLLISLISGGEMGGGDIKLMALIGFFIGWKLTIL-VLFLSVIIGALGGVILVALKIKG- 217
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ IP+ IS+ LIS Y +
Sbjct: 218 --------------RKDYIPFAPYISIAWLISILYGYEMLNYYIK 248
>gi|218245093|ref|YP_002370464.1| peptidase A24A domain-containing protein [Cyanothece sp. PCC 8801]
gi|257058115|ref|YP_003136003.1| Prepilin peptidase [Cyanothece sp. PCC 8802]
gi|218165571|gb|ACK64308.1| peptidase A24A domain protein [Cyanothece sp. PCC 8801]
gi|256588281|gb|ACU99167.1| Prepilin peptidase [Cyanothece sp. PCC 8802]
Length = 270
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 26/179 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + + L+ +L DL + +P ++ L + G I L++ +
Sbjct: 102 LTTVGYWLLSSWLIALSLIDLDTMTLPGELTKSGFILGLGFQVIQGWQGGNIPHTLIMAI 161
Query: 67 IVFIICFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
++ F MG GD L VW GW ++ + I +
Sbjct: 162 GGAVLGIWLFDLMNIGAIFLLGQQGMGDGDSYLAAMIGVWLGWKYLLITTVLSCGIGALV 221
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + P+G +++ +I A + +
Sbjct: 222 GGGAL---------------ATGVLSHRRQPFPFGPFLALAAMIVVFWGDRIIDAYLSI 265
>gi|307726372|ref|YP_003909585.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003]
gi|307586897|gb|ADN60294.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003]
Length = 176
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 53/160 (33%), Gaps = 10/160 (6%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
+V AA +D+ IPN + L S L+ L L F +
Sbjct: 15 VIAFVVAAASTDMQCRRIPNLLVGAGLISALIVQCWLKGIGAGAIAWLAGAGTGFALFLP 74
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV----------R 124
F+ M GDVKLL W G F + L + G + I R
Sbjct: 75 FYLVRGMAAGDVKLLAMVGAWIGPLLVFYAALVTCVVGGVWMLALIARRHQWGKVWANLR 134
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+I + S +PYG+AI+ G + +
Sbjct: 135 VIAHPALQGPGTARDSIESVGSVPYGVAIAAGTITVLLTA 174
>gi|254162919|ref|YP_003046027.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
B str. REL606]
gi|331674522|ref|ZP_08375282.1| leader peptidase PppA [Escherichia coli TA280]
gi|242378523|emb|CAQ33308.1| prepilin peptidase [Escherichia coli BL21(DE3)]
gi|253974820|gb|ACT40491.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
B str. REL606]
gi|253978975|gb|ACT44645.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
BL21(DE3)]
gi|331068616|gb|EGI40011.1| leader peptidase PppA [Escherichia coli TA280]
Length = 269
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|325290041|ref|YP_004266222.1| Prepilin peptidase [Syntrophobotulus glycolicus DSM 8271]
gi|324965442|gb|ADY56221.1| Prepilin peptidase [Syntrophobotulus glycolicus DSM 8271]
Length = 261
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L L+ + D+ + +PN + + + + A VG +
Sbjct: 118 LAFASLLIALSFIDMETMRLPNSLVTGLFLLGAIKIGVFSKPGFFSAGLGAVGTAGCFLI 177
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+G GDVKL + + G+ + L + I + I+T R N
Sbjct: 178 LHLIYNGGIGLGDVKLAGALGFFLGFPDIIFAVLVGSLLGTLIALLLIVTGRKGLNE--- 234
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
IP+G +++G + +
Sbjct: 235 -------------PIPFGPFLAVGAFLMFLQ 252
>gi|229824692|ref|ZP_04450761.1| hypothetical protein GCWU000182_00040 [Abiotrophia defectiva ATCC
49176]
gi|229791021|gb|EEP27135.1| hypothetical protein GCWU000182_00040 [Abiotrophia defectiva ATCC
49176]
Length = 209
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 41/114 (35%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V S +F + L+ + D + IP ++I +L L L +
Sbjct: 58 VESVIFSLFTSALLVLTVIDWRTYEIPISINIFILVLGCLRVVLDFNHLRGYLIGFFAVS 117
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
V + + +GGGD+KL+ + GW L F + I + +
Sbjct: 118 SVLFLIYILTKGRAIGGGDIKLMAVAGLLLGWQLVVLGFFIGCILASVIHIIRM 171
>gi|218710409|ref|YP_002418030.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32]
gi|218323428|emb|CAV19605.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32]
Length = 176
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 46/108 (42%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L+ ++ D+ IPN++ I+ + L+ F ++ + L ++ F
Sbjct: 7 VFWALLIAVSVYDVEKHRIPNKILILFFVFYFLSMFNSNYTFDSFLMSLFGSVVFFCFGL 66
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F+ M GDVKLL ++ GW + F + G + ++L
Sbjct: 67 LFYFLRAMSAGDVKLLGVVGMYLGWGQLLDASYFILVSSGVVGVFYLL 114
>gi|157157487|ref|YP_001464790.1| A24 family peptidase [Escherichia coli E24377A]
gi|209920788|ref|YP_002294872.1| putative leader peptidase [Escherichia coli SE11]
gi|218697015|ref|YP_002404682.1| putative bifunctional prepilin peptidase HopD: leader peptidase;
methyl transferase (General Secretory Pathway)
[Escherichia coli 55989]
gi|7674073|sp|O68932|HOPD_ECOLX RecName: Full=Leader peptidase hopD
gi|3065825|gb|AAC14289.1| leader peptidase HopD [Escherichia coli]
gi|157079517|gb|ABV19225.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli E24377A]
gi|209914047|dbj|BAG79121.1| putative leader peptidase [Escherichia coli SE11]
gi|218353747|emb|CAV00043.1| putative bifunctional prepilin peptidase HopD: leader peptidase;
methyl transferase (General Secretory Pathway)
[Escherichia coli 55989]
gi|324017860|gb|EGB87079.1| peptidase, A24 family protein [Escherichia coli MS 117-3]
Length = 155
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVF 69
++ V L D ++P+R + +L S LL + ++G F
Sbjct: 7 FLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W WT + G + V +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVV 146
>gi|158320666|ref|YP_001513173.1| peptidase A24A domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140865|gb|ABW19177.1| peptidase A24A domain protein [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 21/169 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA- 59
+K + + I L+ AL DL +IP+ + + + +L + +
Sbjct: 88 IKFDFTLEFFFYCILFSILMVVALIDLKHMIIPDVLILCIFILSILYKIAAYVLWMEPFN 147
Query: 60 ----LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
+ L+ +F + F + MG GDV L++S G FL+ ++G I
Sbjct: 148 IVQSIGGLILSGLFFVLIIFLSKGGMGEGDVTLISSLGFILGIKDIFLTIFL-SFVVGAI 206
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+SVF+L ++ K+ IP+G I +
Sbjct: 207 ISVFLLITKIKG---------------RKDPIPFGPFIIFSFFMVVFWG 240
>gi|170682251|ref|YP_001745584.1| A24 family peptidase [Escherichia coli SMS-3-5]
gi|300935320|ref|ZP_07150330.1| peptidase, A24 family protein [Escherichia coli MS 21-1]
gi|301018814|ref|ZP_07183058.1| peptidase, A24 family protein [Escherichia coli MS 69-1]
gi|170519969|gb|ACB18147.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli SMS-3-5]
gi|300399524|gb|EFJ83062.1| peptidase, A24 family protein [Escherichia coli MS 69-1]
gi|300459476|gb|EFK22969.1| peptidase, A24 family protein [Escherichia coli MS 21-1]
Length = 155
Score = 64.9 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVF 69
++ D ++P+R + +L S LL ++G F
Sbjct: 7 FLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W WT + G + + +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVV 146
>gi|157148903|ref|YP_001456223.1| hypothetical protein CKO_04741 [Citrobacter koseri ATCC BAA-895]
gi|157086108|gb|ABV15786.1| hypothetical protein CKO_04741 [Citrobacter koseri ATCC BAA-895]
Length = 166
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVF 69
+I + + D + ++P+R++ +L S LL L + G F
Sbjct: 18 FLIIYLLLSALSGIYDARTGLLPDRLTCPLLWSGLLYYLCCLPDHLPDALWGAIAGYGGF 77
Query: 70 IICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GD+K L + W W L I + +
Sbjct: 78 ALLYWGYRLLYRKEGLGYGDIKFLAALGAWHRWESLPLLVFLAALIASINVMAMYVINGK 137
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G I
Sbjct: 138 G---------------ALKNPLPFGPFLAAAGFII 157
>gi|206901923|ref|YP_002250746.1| type IV prepilin leader peptidase PilD [Dictyoglomus thermophilum
H-6-12]
gi|206741026|gb|ACI20084.1| type IV prepilin leader peptidase PilD [Dictyoglomus thermophilum
H-6-12]
Length = 256
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 19/171 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+F+ LI L+ DL + +IP+ +SI + LL +F G + + L+ G
Sbjct: 99 LFTFKSLILISMLIPIFFIDLENMLIPDVISIPGIVVGLLFSFWEGNLVQGVLGSLIFGG 158
Query: 67 IVFIIC---FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
I+ +I MG GD+KL + G S + I G + I+
Sbjct: 159 ILLLIYVVALLILKEEGMGQGDIKLGFMLGGFLGLKLSLFAIFLSYLIGGIFSILVIVL- 217
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+S +K IP+G + G LIS + + L
Sbjct: 218 ---------------RSKNLKTAIPFGPFLITGALISLFWGEVLIKLYLSL 253
>gi|220929811|ref|YP_002506720.1| peptidase A24A domain protein [Clostridium cellulolyticum H10]
gi|220000139|gb|ACL76740.1| peptidase A24A domain protein [Clostridium cellulolyticum H10]
Length = 265
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 30/178 (16%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--------- 51
+K S V A + L+ A D +IPN I+ L S +
Sbjct: 92 LKYSLTVEFAAMALLSCILICIAFIDAEYKIIPNGFIIIGLISGSVLLLYNLFYPVDIFG 151
Query: 52 ----GMDYELIALHLLVGLIVFIICFCFFAFN-IMGGGDVKLLTSTAVWFGWTPSFLSFL 106
+ LIV ++ + + MG GD+KL ++ GW + +S +
Sbjct: 152 DRVWFNPILGFIVGTSFLLIVSLVGMLVYKSDDAMGMGDIKLFAVIGLFLGWRMTIISLM 211
Query: 107 FFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
V + + I+ + K+ I +G I++G I+
Sbjct: 212 LSVFTAAIVCVLLIIIKKN----------------NRKSTIAFGPYIAIGTFITIIYG 253
>gi|323486359|ref|ZP_08091684.1| prepilin peptidase [Clostridium symbiosum WAL-14163]
gi|323400341|gb|EGA92714.1| prepilin peptidase [Clostridium symbiosum WAL-14163]
Length = 252
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 19/172 (11%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
K V + I L+ ++ D + IP +IV+ + L+ + D+ +
Sbjct: 97 KNGFTVTGICYAIAASSLLVLSVIDWRTFEIPVGCNIVIGTAGLVNLWFNRQDWLTYMIG 156
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L+ + ++ MGGGDVKL+ + + GW L+F + I V +
Sbjct: 157 LICVSGLLLLILLLSKGRAMGGGDVKLMAAAGLLLGWQNVILAFACGCILGSVIHLVLM- 215
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALM 172
K + + +G +S G S L + +
Sbjct: 216 -----------------KIQGKERMLAFGPYLSAGIWFSMMWGQELIQWYIN 250
>gi|324114994|gb|EGC08959.1| peptidase A24 domain-containing protein [Escherichia fergusonii
B253]
Length = 269
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGALVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIILRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|218706930|ref|YP_002414449.1| putative bifunctional prepilin peptidase HopD [Escherichia coli
UMN026]
gi|293406919|ref|ZP_06650843.1| peptidase [Escherichia coli FVEC1412]
gi|298382659|ref|ZP_06992254.1| leader peptidase HopD [Escherichia coli FVEC1302]
gi|300896670|ref|ZP_07115186.1| peptidase, A24 family protein [Escherichia coli MS 198-1]
gi|331664935|ref|ZP_08365836.1| leader peptidase HopD [Escherichia coli TA143]
gi|218434027|emb|CAR14944.1| putative bifunctional prepilin peptidase HopD: leader peptidase;
methyl transferase (General Secretory Pathway)
[Escherichia coli UMN026]
gi|284923328|emb|CBG36422.1| leader peptidase [Escherichia coli 042]
gi|291425730|gb|EFE98764.1| peptidase [Escherichia coli FVEC1412]
gi|298276495|gb|EFI18013.1| leader peptidase HopD [Escherichia coli FVEC1302]
gi|300359501|gb|EFJ75371.1| peptidase, A24 family protein [Escherichia coli MS 198-1]
gi|331057445|gb|EGI29431.1| leader peptidase HopD [Escherichia coli TA143]
Length = 155
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVF 69
++ D ++P+R + +L S LL ++G F
Sbjct: 7 FLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W WT + G + + +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVV 146
>gi|110807169|ref|YP_690689.1| putative leader peptidase [Shigella flexneri 5 str. 8401]
gi|110616717|gb|ABF05384.1| putative leader peptidase [Shigella flexneri 5 str. 8401]
Length = 155
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVF 69
++ D ++P+R + +L S LL +VG F
Sbjct: 7 FLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIVGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W W + G + + +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+KN +P+G ++ G + DS L
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVIGWDSLLI 153
>gi|3169571|gb|AAC17878.1| signal peptidase [Pseudomonas putida GB-1]
Length = 150
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 21/163 (12%)
Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCF 75
+CL+ +L D ++P+ + + ML L+ + G + +
Sbjct: 1 WCLLALSLIDADHQLLPDALVLPMLWLGLIVNAFGIYAPLTDALWGAVAGYLSLWTVYWL 60
Query: 76 FAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F MG GD KL+ W GW L+ L + + + R
Sbjct: 61 FKLITGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGALVGLCLLRLRR------- 113
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
M IP+G +++ G I+ + M L
Sbjct: 114 ---------HAMGTAIPFGPYLAIAGWIAVLWGDEMYASYMQL 147
>gi|218550220|ref|YP_002384011.1| bifunctional prepilin leader peptidase and methylase [Escherichia
fergusonii ATCC 35469]
gi|218357761|emb|CAQ90405.1| bifunctional prepilin leader peptidase and methylase [Escherichia
fergusonii ATCC 35469]
Length = 269
Score = 64.5 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDSVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F + +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWLAGIILRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|163738362|ref|ZP_02145777.1| hypothetical protein RGBS107_10076 [Phaeobacter gallaeciensis
BS107]
gi|161388283|gb|EDQ12637.1| hypothetical protein RGBS107_10076 [Phaeobacter gallaeciensis
BS107]
Length = 188
Score = 64.5 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 7/161 (4%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M S V AL+DL IPN ++ F++ L M +
Sbjct: 21 MLISAHVALWFLPFVVPLCCVVALNDLRHMRIPNWTVDLLGAIFVIVGPFL-MSWTDYGW 79
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
LL I + F ++ ++G GD K + A + F V I +L
Sbjct: 80 QLLHLPIGIGLGFLCYSAGMVGAGDAKFAGAAAPFV----VFGDLSVVVIIFSAMLLAGF 135
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
LT R+ KS+ + +K P G + +GG + +
Sbjct: 136 LTHRIAKYTPLRRLAPHWKSWDVGSKFPMG--LCLGGTLVF 174
>gi|251796114|ref|YP_003010845.1| peptidase A24A domain protein [Paenibacillus sp. JDR-2]
gi|247543740|gb|ACT00759.1| peptidase A24A domain protein [Paenibacillus sp. JDR-2]
Length = 251
Score = 64.5 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 16/166 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + L+ V +SDL ++PNR+ + F+ L + + + +
Sbjct: 100 TVIGLLLVSMSVILTVSDLKYMLLPNRILLFFAPLFIALRCLFPVGSIWLHIGGALAGGG 159
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ MG GDVKLL G +F+ + + +L
Sbjct: 160 VLLAVVILTRGGMGLGDVKLLFLLGWILGLPNLIPAFILSCFFGSTVGGLLMLF------ 213
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K K IP+G + +G L+S+ +
Sbjct: 214 ----------KVVKRKQPIPFGPFLLLGALLSFAYGDAMIDLYRSI 249
>gi|194436775|ref|ZP_03068875.1| leader peptidase PppA [Escherichia coli 101-1]
gi|194424257|gb|EDX40244.1| leader peptidase PppA [Escherichia coli 101-1]
Length = 269
Score = 64.5 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASVIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|300690358|ref|YP_003751353.1| type 4 prepilin-like proteins leader peptide processing enzyme
(protein secretion protein XCPA) [includes: Leader
peptidase (Prepilin peptidase); N-methyltransferase]
[Ralstonia solanacearum PSI07]
gi|299077418|emb|CBJ50044.1| type 4 prepilin-like proteins leader peptide processing enzyme
(Protein secretion protein XCPA) [Includes: Leader
peptidase (Prepilin peptidase); N-methyltransferase]
[Ralstonia solanacearum PSI07]
Length = 290
Score = 64.5 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 22/166 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + LV ++ D + ++P+ ++ +L LL F + + + G +
Sbjct: 132 AVASAALLWFLVAGSMIDADTQLLPDAITQPLLWLGLLVNLFDMFARLPDAVIGAMAGYL 191
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+ + WFGW ++ +L +
Sbjct: 192 FLWTIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQ-----------------ALPLLVL 234
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + + + ++ +G I+ G+I+
Sbjct: 235 LSSVVGLVFGAVRIARGAKSESPFSFGPFIAGAGVIALLAGPQLVA 280
>gi|198282505|ref|YP_002218826.1| peptidase A24A domain-containing protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665857|ref|YP_002424695.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247026|gb|ACH82619.1| peptidase A24A domain protein [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518070|gb|ACK78656.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 266
Score = 64.5 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 28/162 (17%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------DYELIALHLLVG 65
L+ + L+ + DL + ++P+R++ + + LL L +++G
Sbjct: 108 LVFTWALLALTMIDLETQLLPDRLTKPGMLAGLLLNGSALFWPGLALVTPLDALLGMIIG 167
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + MGGGD+KLL W GW FL+ G + F+L
Sbjct: 168 YGSLWLLATVYYRIAGRHGMGGGDLKLLGMIGAWLGWQAVFLTLFIAALGGGLVALGFLL 227
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ +P+G +++GG +
Sbjct: 228 GGKGRDY-----------------AMPFGPYLALGGWLMLLW 252
>gi|299065625|emb|CBJ36797.1| type 4 prepilin-like proteins leader peptide processing enzyme
(Protein secretion protein XCPA) [Includes: Leader
peptidase (Prepilin peptidase); N-methyltransferase]
[Ralstonia solanacearum CMR15]
Length = 294
Score = 64.5 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 22/168 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + L+ ++ D + ++P+ ++ +L LL F + + G +
Sbjct: 136 AVASAALLWFLIAGSMIDADTQLLPDAITQPLLWLGLLVNLFDMFARLPDAVIGATAGYL 195
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+ + WFGW ++ +L +
Sbjct: 196 FLWAIYWAYKLLRGREGMGYGDFKLMGALGAWFGWQ-----------------ALPLLVL 238
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ + + + ++ +G I+ G+IS +
Sbjct: 239 LSSVVGLVFGVVRIARGATSESPFSFGPFIAGAGVISLLAGPQLVALM 286
>gi|17545376|ref|NP_518778.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|17427668|emb|CAD14187.1| probable prepilin peptidase transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 172
Score = 64.5 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L +V AA+ D+ + IPNR+ L + L+ + L
Sbjct: 5 TALANLSLLVLVVTAAVHDVRTRRIPNRLVAAGLAAALIAQCAMLGPVAGALAWLGGAAA 64
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+C + MG GDVKL+ + + G + + GG+L+V ++ +
Sbjct: 65 GMGLCIGLYLLRGMGAGDVKLMGAIGAFTGPLAALH-VGLASCVAGGVLAVAMVALDARK 123
Query: 128 NHIPIFGMFVPKSFLMKNK-----------IPYGIAISMGGLIS 160
N P + +PY +A + G L+
Sbjct: 124 NMGMALLFSAPVADRQTQPKESVRRGNAIRLPYAVAFAAGTLLV 167
>gi|196250148|ref|ZP_03148842.1| peptidase A24A domain protein [Geobacillus sp. G11MC16]
gi|196210332|gb|EDY05097.1| peptidase A24A domain protein [Geobacillus sp. G11MC16]
Length = 251
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 16/167 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ +SDL +IP+RV +V FL+ + + L +
Sbjct: 100 LIIVWTLIALFAIIVVSDLRYMLIPDRVLVVFAALFLIERLFIPFLPWMDMLIGAAVGFL 159
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ + MGGGDVKL GW L+F I V +
Sbjct: 160 LLLLIAVLSKGGMGGGDVKLFAVLGFVLGWKMVLLAFFLAALYGTVIGLVGMALGH---- 215
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+P+ AI++G L ++ A + L
Sbjct: 216 ------------VRRGVPMPFAPAIALGTLTAFFFGEAMVRAYLSLM 250
>gi|330010483|ref|ZP_08306762.1| type IV prepilin leader peptidase [Klebsiella sp. MS 92-3]
gi|328534535|gb|EGF61120.1| type IV prepilin leader peptidase [Klebsiella sp. MS 92-3]
Length = 266
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 5/121 (4%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFIICFCFFAF--- 78
A D + ++P+R+++ +L + LL + + + G + + F
Sbjct: 133 ARIDARTQLLPDRLTLPLLWAGLLFNLNEVYIALPDAVAGAMAGYLALWSVYWLFRLLTG 192
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GD KLL + W GW L A + L R FG ++
Sbjct: 193 KEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQSLQQPLAFGPWL 252
Query: 138 P 138
Sbjct: 253 A 253
>gi|107028251|ref|YP_625346.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
gi|116687162|ref|YP_840409.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
gi|105897415|gb|ABF80373.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
gi|116652877|gb|ABK13516.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
Length = 179
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 16/169 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V L V AA +D+ + IPNR+ ++ L L+ LL + L F
Sbjct: 10 VPLCVTLLAVAAASTDIATRRIPNRLVLLGLAGALVAQCLLQGVPAGVLGWLAGAATGFG 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F+ M GDVKL+ + W G +F + + GGI ++ +R +
Sbjct: 70 LLLPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQM 128
Query: 131 PIFGMFV---------------PKSFLMKNKIPYGIAISMGGLISYPDS 164
+ P +PYG+AI++G L + S
Sbjct: 129 WTNVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTLGTLFAS 177
>gi|301326856|ref|ZP_07220156.1| bacterial Peptidase A24 protein [Escherichia coli MS 78-1]
gi|300846531|gb|EFK74291.1| bacterial Peptidase A24 protein [Escherichia coli MS 78-1]
Length = 269
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIILRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQVLF 269
>gi|261379322|ref|ZP_05983895.1| type IV prepilin leader peptidase [Neisseria subflava NJ9703]
gi|284797759|gb|EFC53106.1| type IV prepilin leader peptidase [Neisseria subflava NJ9703]
Length = 295
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 25/154 (16%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFII 71
I L+ D + +P+ ++ ++ LL + L + G +
Sbjct: 142 FILTAILIALTFIDANTQYLPDSLTQPLIWIGLLFNLNDTFVPLHSAVLGAIAGYMSLYT 201
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ MG GD KLL + W G +F A++G + ++ +
Sbjct: 202 LCAVYKLLTGKIGMGNGDFKLLAALGAWLGV-GILPVLIFMAALVGLVGALIARVGK--- 257
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+G ++++ G I
Sbjct: 258 ----------------GQYFAFGPSLAVAGWIIL 275
>gi|297617366|ref|YP_003702525.1| prepilin peptidase [Syntrophothermus lipocalidus DSM 12680]
gi|297145203|gb|ADI01960.1| Prepilin peptidase [Syntrophothermus lipocalidus DSM 12680]
Length = 250
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 16/165 (9%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + CL ++DL +IP+ V I L + + +L L +G F
Sbjct: 99 LLAWVLVSCLTVITVADLKHMVIPDEVIIFALVTGGILLYLDSWARLKWGLASGLGAANF 158
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ + MG GDVKL ++ G + + LF + G ++ + ++
Sbjct: 159 LALVILVSRGGMGWGDVKLAGVLGLFLGVGGTLVG-LFVAFVAGALVGLSLVVAGRKGAK 217
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
IP+G +S+GGL+++ + L
Sbjct: 218 DL---------------IPFGPFLSLGGLVAFFWGQEIVDWYLKL 247
>gi|172038076|ref|YP_001804577.1| type 4 prepilin peptidase [Cyanothece sp. ATCC 51142]
gi|171699530|gb|ACB52511.1| type 4 prepilin peptidase [Cyanothece sp. ATCC 51142]
Length = 269
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 27/183 (14%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
+ + + + L+ ++ D + +P ++ L L+ ++G +L
Sbjct: 98 YQFTLATIAYWVLMSWLIALSMIDFDTMTLPGVLTKSGLVLGLIFQGVMGWQVAQTPEYL 157
Query: 63 LVGLIVFIICFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
++G++ ++ F +GGGD KL W GW ++ +
Sbjct: 158 IIGVVSAVLGIWLFDLIGLGGTLVLGQQALGGGDSKLAAMLGAWLGWKYLLVTSFLACLV 217
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ G + ++ P+G +++G ++S
Sbjct: 218 G----------------SVFGMGGMMLGLMDRRHPFPFGPFLALGAMLSVFLGEAIISTY 261
Query: 172 MGL 174
+ L
Sbjct: 262 IRL 264
>gi|78485735|ref|YP_391660.1| prepilin peptidase [Thiomicrospira crunogena XCL-2]
gi|78364021|gb|ABB41986.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Thiomicrospira crunogena XCL-2]
Length = 261
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 21/161 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ V + + L+ + D+ +I + +S+ ++ + LL E L +G +
Sbjct: 113 ALVAIGFSWVLLTILIIDIEHQLILDSLSLPLMWAGLLINSQSYYVSPEQAILGAAIGYL 172
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F F MG GD KLL + WFG + + ++ ++ + +
Sbjct: 173 LLWTLFHSFKLLTGKEGMGYGDFKLLAALGAWFGV-MAIPQMILIASLSSLVIGGGLALL 231
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ + IP+G +++GG S
Sbjct: 232 KIKKLD---------------DPIPFGPFLAIGGWSSLLLG 257
>gi|170765808|ref|ZP_02900619.1| leader peptidase PppA [Escherichia albertii TW07627]
gi|170124954|gb|EDS93885.1| leader peptidase PppA [Escherichia albertii TW07627]
Length = 269
Score = 64.1 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL + +P+ + +L + L+ A+ + + +L G
Sbjct: 126 ALAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLAGF 185
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
F + +G GDV L + W G S + G I +V
Sbjct: 186 ATFYSLRWLAGIILRKEALGMGDVLLFAALGGWVG-ALSLPHVALIASCCGLIYAVI--- 241
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + L
Sbjct: 242 -----------------TKKGSTTLPFGPCLSLGGIATLYLQALL 269
>gi|170734871|ref|YP_001773985.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
gi|169820909|gb|ACA95490.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
Length = 179
Score = 64.1 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 16/169 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V L V AA +D+ S IPNR+ ++ L L+ LL + L F
Sbjct: 10 VPLCVTLLAVAAASTDIASRRIPNRLVLLGLAGALVAQCLLHGVPAGVLGWLAGAATGFG 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F+ M GDVKL+ + W G +F + + GGI ++ +R +
Sbjct: 70 LLLPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQV 128
Query: 131 PIFGMFV---------------PKSFLMKNKIPYGIAISMGGLISYPDS 164
+ P +PYG+AI++G L + S
Sbjct: 129 WTNVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTLGTLFAS 177
>gi|215488622|ref|YP_002331053.1| leader peptidase HopD [Escherichia coli O127:H6 str. E2348/69]
gi|215266694|emb|CAS11133.1| leader peptidase HopD [Escherichia coli O127:H6 str. E2348/69]
Length = 155
Score = 64.1 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVF 69
++ V D ++P+R + +L S LL ++G F
Sbjct: 7 FLILYACLSVLLFFWDAKHGLLPDRFTSPLLWSGLLFYQVCYPDGLADALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W WT + G + + +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVV 146
>gi|296331648|ref|ZP_06874117.1| membrane protease and transmethylase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675393|ref|YP_003867065.1| membrane protease and transmethylase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151243|gb|EFG92123.1| membrane protease and transmethylase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413637|gb|ADM38756.1| membrane protease and transmethylase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 248
Score = 64.1 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L+ A++D+ +IPNR+ I L + +D ++L +F+
Sbjct: 100 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYVSLLGAAAGFLFLTL 159
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+GGGD+KL G +F F V I + +LT R
Sbjct: 160 IAAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAATVLTGR-------- 211
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ +P+ AI+ G +++Y M ++
Sbjct: 212 --------LAKRQPLPFAPAIAAGSILAYLYGDSIISFYMKMA 246
>gi|256832572|ref|YP_003161299.1| peptidase A24A domain-containing protein [Jonesia denitrificans DSM
20603]
gi|256686103|gb|ACV08996.1| peptidase A24A domain protein [Jonesia denitrificans DSM 20603]
Length = 274
Score = 64.1 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIV----MLGSFLLTAFLLGMDYELIALHLLVGLI 67
L V A DL + +PN++ + + L+G ++ + L GLI
Sbjct: 117 LLFLTAVGVALAFIDLDTHKLPNKIVLPAYPVVAVLVCFATLLMGWEWTSVIRAALGGLI 176
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTVRM 125
++I+ F MG GDVKL + GW + F +LGG+ ++ +L +R
Sbjct: 177 LYILYFVLCVIGGMGFGDVKLAGLLGISLGWLGWSYLIVGGFLPFVLGGLYAIVLLVLRR 236
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ K+ IP+G + +G +S + + L
Sbjct: 237 VG---------------RKSGIPFGPWMILGWYLSLFVTEPLSAWYLTL 270
>gi|226939592|ref|YP_002794665.1| Lep4 [Laribacter hongkongensis HLHK9]
gi|226714518|gb|ACO73656.1| Lep4 [Laribacter hongkongensis HLHK9]
Length = 267
Score = 64.1 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 22/160 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
L+ L+ A DL + ++P+ +++ ++ L + + G+ + G
Sbjct: 120 QLLAALVLAGFLLPLAWIDLETRLLPDCLTLPLVWLGLGFSSLDVTGVPLHEALWGAMAG 179
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F MG GDVKLL + W G + + L
Sbjct: 180 YALLWSVAWLFLRLTGREGMGQGDVKLLAALGAWLGLAAIPDVIVLAAGAAVVVGLAGRL 239
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
R+ + +P+G ++ G++
Sbjct: 240 FGRLPAD----------------AALPFGPFLATAGMVVL 263
>gi|17547546|ref|NP_520948.1| type 4 prepilin peptidase bifunctionnal: leader peptidase and
N-methyltransferase transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17429850|emb|CAD16534.1| probable type 4 prepilin peptidase bifunctionnal: leader peptidase
and n-methyltransferase transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 294
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 54/166 (32%), Gaps = 22/166 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLI 67
+ + L+ ++ D + ++P+ ++ +L LL + G +
Sbjct: 136 AVASAALLWFLIAGSMIDADTQLLPDAITQPLLWLGLLVNLFSMFARLPDAVIGATAGYL 195
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GD KL+ + WFGW ++ +L +
Sbjct: 196 FLWAIYWAYKLLRGREGMGYGDFKLMGALGAWFGWQ-----------------ALPLLVL 238
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + + + ++ +G I+ G+I+
Sbjct: 239 LSSVVGLVFGVVRIARGATSESPFSFGPFIAGAGVIALLAGPQLVA 284
>gi|15803849|ref|NP_289883.1| putative leader peptidase [Escherichia coli O157:H7 EDL933]
gi|15833442|ref|NP_312215.1| HopD [Escherichia coli O157:H7 str. Sakai]
gi|168753091|ref|ZP_02778098.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4401]
gi|168769189|ref|ZP_02794196.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4486]
gi|168784319|ref|ZP_02809326.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4076]
gi|168785142|ref|ZP_02810149.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC869]
gi|195939872|ref|ZP_03085254.1| HopD [Escherichia coli O157:H7 str. EC4024]
gi|208808127|ref|ZP_03250464.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4206]
gi|208814566|ref|ZP_03255895.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4045]
gi|208819814|ref|ZP_03260134.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4042]
gi|209398150|ref|YP_002272778.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4115]
gi|217326174|ref|ZP_03442258.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. TW14588]
gi|254795259|ref|YP_003080096.1| putative leader peptidase [Escherichia coli O157:H7 str. TW14359]
gi|261224627|ref|ZP_05938908.1| putative leader peptidase [Escherichia coli O157:H7 str. FRIK2000]
gi|261254479|ref|ZP_05947012.1| putative leader peptidase [Escherichia coli O157:H7 str. FRIK966]
gi|291284681|ref|YP_003501499.1| Peptidase, A24 (Type IV prepilin peptidase) family [Escherichia
coli O55:H7 str. CB9615]
gi|293416739|ref|ZP_06659376.1| leader peptidase hopD [Escherichia coli B185]
gi|12517954|gb|AAG58443.1|AE005557_12 putative leader peptidase [Escherichia coli O157:H7 str. EDL933]
gi|13363661|dbj|BAB37611.1| leader peptidase HopD [Escherichia coli O157:H7 str. Sakai]
gi|188998493|gb|EDU67485.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4076]
gi|189359320|gb|EDU77739.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4401]
gi|189361787|gb|EDU80206.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4486]
gi|189374570|gb|EDU92986.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC869]
gi|208727928|gb|EDZ77529.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4206]
gi|208735843|gb|EDZ84530.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4045]
gi|208739937|gb|EDZ87619.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4042]
gi|209159550|gb|ACI36983.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. EC4115]
gi|217322395|gb|EEC30819.1| peptidase, A24 (type IV prepilin peptidase) family [Escherichia
coli O157:H7 str. TW14588]
gi|254594659|gb|ACT74020.1| putative leader peptidase [Escherichia coli O157:H7 str. TW14359]
gi|290764554|gb|ADD58515.1| Peptidase, A24 (Type IV prepilin peptidase) family [Escherichia
coli O55:H7 str. CB9615]
gi|291431315|gb|EFF04300.1| leader peptidase hopD [Escherichia coli B185]
gi|320639627|gb|EFX09221.1| Peptidase, A24 (Type IV prepilin peptidase) family protein
[Escherichia coli O157:H7 str. G5101]
gi|320645125|gb|EFX14141.1| Peptidase, A24 (Type IV prepilin peptidase) family protein
[Escherichia coli O157:H- str. 493-89]
gi|320650436|gb|EFX18902.1| Peptidase, A24 (Type IV prepilin peptidase) family protein
[Escherichia coli O157:H- str. H 2687]
gi|320655961|gb|EFX23881.1| Peptidase, A24 (Type IV prepilin peptidase) family protein
[Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320661413|gb|EFX28828.1| Peptidase, A24 (Type IV prepilin peptidase) family protein
[Escherichia coli O55:H7 str. USDA 5905]
gi|320666435|gb|EFX33418.1| Peptidase, A24 (Type IV prepilin peptidase) family protein
[Escherichia coli O157:H7 str. LSU-61]
Length = 155
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVF 69
++ D ++P+R + +L S LL ++G F
Sbjct: 7 FLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W W + G + + +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+KN +P+G ++ G + DS L
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVIGWDSLLI 153
>gi|152968730|ref|YP_001333839.1| pullulanase Q protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238893128|ref|YP_002917862.1| pullulanase-specific type II secretion system type 4 prepilin
peptidase [Klebsiella pneumoniae NTUH-K2044]
gi|262044802|ref|ZP_06017846.1| prepilin peptidase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|150953579|gb|ABR75609.1| Pullulanase Q protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238545444|dbj|BAH61795.1| pullulanase-specific type II secretion system type 4 prepilin
peptidase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259037859|gb|EEW39086.1| prepilin peptidase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 266
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 5/121 (4%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFIICFCFFAF--- 78
A D + ++P+R+++ +L + LL + + + G + + F
Sbjct: 133 ARIDARTQLLPDRLTLPLLWAGLLFNLNEVYIALPDAVAGAMAGYLALWSVYWLFRLLTG 192
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GD KLL + W GW L A + L R FG ++
Sbjct: 193 KEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQSLQQPLAFGPWL 252
Query: 138 P 138
Sbjct: 253 A 253
>gi|284922991|emb|CBG36083.1| type II secretion system leader peptidase [Escherichia coli 042]
Length = 269
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|167580491|ref|ZP_02373365.1| type IV pilus prepilin peptidase PilD [Burkholderia thailandensis
TXDOH]
Length = 304
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 150 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVVGAIAGY 209
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 210 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 253
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 254 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 304
>gi|163814846|ref|ZP_02206234.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759]
gi|158449785|gb|EDP26780.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759]
Length = 169
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 5/158 (3%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + A ++D S IPN++ V L + + ++ E + +I
Sbjct: 14 IIFLIPLIATVSMAVVTDFRSWKIPNKLVAVGLIQGFVVSAVVRGLPEGLLSSAKGCVIP 73
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+I + F +G GD+KLL + G + + + GG++S+ L I +
Sbjct: 74 VVILYVLFLIKALGAGDIKLLAVAGSFVGLD--IYRVMIYSFLAGGVISIIYLLKEFILS 131
Query: 129 HIPIFGMFVPKSFLM--KNKIPYGIAISMGGLISYPDS 164
+ K ++ + AI +GG++ Y +
Sbjct: 132 ITNRKKLSDRTECSRVGKRRVHFSAAI-LGGILYYATT 168
>gi|157146458|ref|YP_001453777.1| hypothetical protein CKO_02218 [Citrobacter koseri ATCC BAA-895]
gi|157083663|gb|ABV13341.1| hypothetical protein CKO_02218 [Citrobacter koseri ATCC BAA-895]
Length = 265
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 23/164 (14%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHL 62
V + L+ + D ++P+ ++ +L + LL M
Sbjct: 112 PSFVTLIALWVLWCGLLPLTMIDAKYMLLPDSLTQPLLWAGLLLHCVFHTMPLASALYGA 171
Query: 63 LVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+ G ++ + + F +G GD KLL + W GW L L + +
Sbjct: 172 VAGYLILWLVYWSFRLLTGREGLGQGDFKLLAALGAWCGWQALPLLILVAALSGIVLYGL 231
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
F +IP+G ++ G+ +
Sbjct: 232 FY------------------SGVSKSGQIPFGPCLAFSGMAMFI 257
>gi|317487399|ref|ZP_07946187.1| bacterial Peptidase A24 domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316921331|gb|EFV42629.1| bacterial Peptidase A24 domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 270
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 18/154 (11%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVF 69
V+L+ L+ A+ DL ++P+ +++ + A F LGMD+ L LVG F
Sbjct: 112 VYLVFTGMLIVASGIDLECFILPDGITLGGTVLAVPAAVFALGMDWTDALLGGLVGGGTF 171
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F + MG GDVKL+ V G L L + +
Sbjct: 172 LAVLLVFKRLRGVDGMGFGDVKLMLMLGVLCGPLGLPLITLVAGVSALAAFLLIACLMPR 231
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L + IP+G +S+G +
Sbjct: 232 EAP-------------LREMPIPFGPFLSLGAFV 252
>gi|289549054|ref|YP_003474042.1| peptidase A24A domain protein [Thermocrinis albus DSM 14484]
gi|289182671|gb|ADC89915.1| peptidase A24A domain protein [Thermocrinis albus DSM 14484]
Length = 248
Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 22/157 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGL 66
+F L+ A++ D + ++P+ +++ L + L+ +F + L +G
Sbjct: 96 ELLIFYFFFSALLVASVIDWETFLLPDSITLGGLVTGLVLSFFRRDISPWESFLGAALGG 155
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
F++ + ++ +G GDVKL+ + G + + IL
Sbjct: 156 AFFLLIYLYYTRLRKVEGLGLGDVKLMAFIGSFTGLYGVAYAVGLGSVLGLLYAFPIILK 215
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
R + IPYG +S G +
Sbjct: 216 NRNLQFV-----------------IPYGPFLSAGCFL 235
>gi|167618600|ref|ZP_02387231.1| type IV pilus prepilin peptidase PilD [Burkholderia thailandensis
Bt4]
gi|257137851|ref|ZP_05586113.1| type IV pilus prepilin peptidase PilD [Burkholderia thailandensis
E264]
Length = 304
Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 150 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVVGAIAGY 209
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 210 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 253
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 254 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 304
>gi|323978960|gb|EGB74040.1| peptidase A24 domain-containing protein [Escherichia coli TW10509]
Length = 269
Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F + +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWLAGIILRKEALGMGDVLLFAALGGWVG-ALSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGIATLYLQALF 269
>gi|190192161|dbj|BAG48296.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Microcystis aeruginosa NIES-843]
Length = 269
Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 27/160 (16%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78
D + +PN ++ L ++ LLG ++L + ++ F
Sbjct: 121 DFDTMTLPNCLTQSGLVLGIVFQTLLGWQNNQSVIYLFSAIASAVLGVWLFDLIRWGGSF 180
Query: 79 ----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
MGGGD KL W GW ++ AI I I +
Sbjct: 181 ALRQQAMGGGDAKLAAMIGAWLGWQALLVTAFLACAIGAAIGMTGIFLGK---------- 230
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K IP+G +++G L+S S A +
Sbjct: 231 ------MAKKQAIPFGPLLALGALMSVFWSDKIISAYQTI 264
>gi|195953491|ref|YP_002121781.1| peptidase A24A domain protein [Hydrogenobaculum sp. Y04AAS1]
gi|195933103|gb|ACG57803.1| peptidase A24A domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 278
Score = 63.7 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 23/165 (13%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELI 58
+ V + L+ L+ + DL ++ + + + LL + +D +
Sbjct: 105 LNIPDAVKTLEALLFGSILIVQSFIDLDWFILLDSFNYAGIVFGLLFSLSNYGFVDIKSS 164
Query: 59 ALHLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
L +L G ++ + + + +G GD+KLLT + G + F I
Sbjct: 165 ILGILFGGLIPFLIYYIYLKVRKMEGLGIGDIKLLTMIGAFGGIWMVLGAMFFGSLIGLL 224
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ I+ + + + IP+G +S+G ++
Sbjct: 225 VSIPTIIKNKNMQYY-----------------IPFGPFLSIGAIL 252
>gi|138896192|ref|YP_001126645.1| late competence protein ComC [Geobacillus thermodenitrificans
NG80-2]
gi|134267705|gb|ABO67900.1| Late competence protein ComC [Geobacillus thermodenitrificans
NG80-2]
Length = 248
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 16/167 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ +SDL +IP+RV +V FL+ + + L +
Sbjct: 97 LIIVWTLIALFAIIVVSDLRYMLIPDRVLVVFAALFLIERLFIPFLPWMDMLIGAAVGFL 156
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ + MGGGDVKL GW L+F I V +
Sbjct: 157 LLLLIAVLSKGGMGGGDVKLFAVLGFVLGWKMVLLAFFLAALYGTVIGLVGMALGH---- 212
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+P+ AI++G L ++ A + L
Sbjct: 213 ------------VRRGVPMPFAPAIALGTLTAFFFGEAMVRAYLSLM 247
>gi|159028570|emb|CAO87378.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 269
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 27/160 (16%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78
D + +PN ++ L ++ LLG ++L + ++ F
Sbjct: 121 DFDTMTLPNSLTQSGLVLGIVFQTLLGWQNNQSVVYLFSAIASAVLGVWLFDLIRWGGSF 180
Query: 79 ----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
MGGGD KL W GW ++ AI GI + I +
Sbjct: 181 ALGQQAMGGGDAKLAAMIGAWLGWQALLVTAFLACAIGAGIGIMGIFLGK---------- 230
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K IP+G +++G L+S S A +
Sbjct: 231 ------MGKKQAIPFGPFLALGALMSVFWSDKIISAYQTI 264
>gi|16263310|ref|NP_436103.1| CpaA2 pilus assembly protein [Sinorhizobium meliloti 1021]
gi|14523989|gb|AAK65515.1| CpaA2 prepilin peptidase [Sinorhizobium meliloti 1021]
Length = 170
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 58/140 (41%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
FL+ + +A + D+ + I NRV + ++ +F + A G++ + ++V V
Sbjct: 10 AFLLFAGAMTYAGIRDVATMTISNRVVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLA 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F FA +GGGD KLL +W G + L+ I + + R+
Sbjct: 70 CTFVLFAAGWIGGGDAKLLPVAVLWLGADLALPFILYTSVIGAALTVGLLQLRRVPLPLA 129
Query: 131 PIFGMFVPKSFLMKNKIPYG 150
+ + + IPYG
Sbjct: 130 LKKNAWAKRLLDRETGIPYG 149
>gi|291619178|ref|YP_003521920.1| TapD [Pantoea ananatis LMG 20103]
gi|291154208|gb|ADD78792.1| TapD [Pantoea ananatis LMG 20103]
Length = 257
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 20/157 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVG 65
+ +A L+ L+ A+ D ++P+ ++ +L L F + + + G
Sbjct: 105 LTAAFILVASCLLLLLAVIDQRHFLLPDVLTGALLWLGLSRFFFAVPLSVTSAVGGAVAG 164
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + +G GD+KL + +W GW L +V +
Sbjct: 165 YGSLWLLAWLYRQIKHQEGLGNGDIKLFAALGIWCGWQALPWIALIASVSALLAFAVRAI 224
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ M + +P+G ++ G
Sbjct: 225 IHKR---------------LYMNSPLPFGPFLAAAGW 246
>gi|315649133|ref|ZP_07902224.1| peptidase A24A prepilin type IV [Paenibacillus vortex V453]
gi|315275449|gb|EFU38806.1| peptidase A24A prepilin type IV [Paenibacillus vortex V453]
Length = 170
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 1/140 (0%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + + L+ A L+DL S IPN +++ + + +L +E + L
Sbjct: 2 AVAYGLCAVYLITAFLTDLRSMKIPNALTVPAMLLGPVYHGILD-GWEGMFFSLKGLGAG 60
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F+I + +G GDVKL W G + + ++ V G + + +L R
Sbjct: 61 FLILLIMYFIGAVGAGDVKLFGGIGAWTGLWFTLHAIMYSVLCAGVVGLIILLWRRETMK 120
Query: 129 HIPIFGMFVPKSFLMKNKIP 148
I + F++K+ +P
Sbjct: 121 RIRKVVGSIAGVFILKSGLP 140
>gi|114777395|ref|ZP_01452392.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Mariprofundus ferrooxydans PV-1]
gi|114552177|gb|EAU54679.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Mariprofundus ferrooxydans PV-1]
Length = 256
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 21/164 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
A+ L+ F L + DL + ++P+ +++ + LL ++ L + + G
Sbjct: 98 QLAMALVLLFLLWVLSFIDLETGLLPDVLTLPGIALGLLFSWWLEHGL-DALIGAIAGYA 156
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F MG GD KLL + GW L I I S+F+
Sbjct: 157 ILWSVNRLFLLFTGREGMGYGDFKLLAMLGAFLGWQALPFIILLSSVIGVVIGSLFLWAS 216
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
R ++ +IP+G ++ G+I
Sbjct: 217 RR----------------GLRAEIPFGPYLAAAGMIWLLWGDAI 244
>gi|251767752|ref|ZP_04820240.1| peptidase A24A, prepilin type IV [Burkholderia mallei PRL-20]
gi|254197207|ref|ZP_04903629.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
gi|169653948|gb|EDS86641.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
gi|243061825|gb|EES44011.1| peptidase A24A, prepilin type IV [Burkholderia mallei PRL-20]
Length = 183
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 2/148 (1%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
E++M+ A++D IPN + +V L + ++ +
Sbjct: 15 EAEMIHLFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGA 74
Query: 63 L-VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L G + + F FFA +MG DVK+ W G + + ++ G+ ++ ++
Sbjct: 75 LIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLS-ALPRLWVVASVAAGVHALALM 133
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPY 149
+ G + + PY
Sbjct: 134 LLTRTPPGSLGRGGAPAFALGARRAAPY 161
>gi|307304371|ref|ZP_07584122.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
gi|306902573|gb|EFN33167.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
Length = 170
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 58/140 (41%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
FL+ + +A + D+ + I NR+ + ++ +F + A G++ + ++V V
Sbjct: 10 AFLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLA 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F FA +GGGD KLL +W G + L+ I + + R+
Sbjct: 70 CTFVLFAAGWIGGGDAKLLPVAVLWLGADLALPFILYTSVIGAALTVGLLQLRRVPLPLA 129
Query: 131 PIFGMFVPKSFLMKNKIPYG 150
+ + + IPYG
Sbjct: 130 LKKNAWAKRLLDRETGIPYG 149
>gi|302039374|ref|YP_003799696.1| type IV pilus prepilin peptidase PilD [Candidatus Nitrospira
defluvii]
gi|300607438|emb|CBK43771.1| Type IV pilus prepilin peptidase PilD [Candidatus Nitrospira
defluvii]
Length = 259
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 21/160 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ + L+ +DL MIP+ V++ + LL A +L + L +L+G
Sbjct: 99 AAWAYAALLSSLIVVTGTDLSHTMIPDAVTLPGIVIGLLCAVLILPIGLVDSLLGVLLGG 158
Query: 67 IVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F MGGGD+KL+ + GW P L+ + + + I
Sbjct: 159 GILWFLAWISPYVFGKEGMGGGDIKLMAMVGAFLGWQPVLLAIMIGSFLGSIVGVGLIAI 218
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ IP+G +++G +++
Sbjct: 219 G----------------VMRREQYIPFGPFLAVGSILALL 242
>gi|323189073|gb|EFZ74357.1| type 4 prepilin-like proteins leader peptide-processing enzyme
domain protein [Escherichia coli RN587/1]
Length = 155
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVF 69
++ D ++P+R + +L S LL ++G F
Sbjct: 7 FLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCYPDGLADALWGAIIGYSTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W WT + G + + +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTLLPRLVFLAASFACGAVVIGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 E---------------SLKNPLPFGPFLAAAGFVV 146
>gi|4139253|gb|AAD05189.1| type IV prepilin peptidase GspO [Burkholderia pseudomallei 1026b]
Length = 275
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 121 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 180
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW L
Sbjct: 181 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQVVLIA-------------- 226
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +P+G ++ GG + F + L G
Sbjct: 227 --AVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 275
>gi|323960848|gb|EGB56468.1| peptidase A24 domain-containing protein [Escherichia coli H489]
Length = 269
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
+I L+ A++ DL + +P+ + +L + L+ A+ + + +LVG I
Sbjct: 127 LAVMILSAWLIAASIIDLDNQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGFI 186
Query: 68 VF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
F I +G GDV L + W G S + + G I +V
Sbjct: 187 TFYSLRWIAGIVLRKEALGMGDVLLFAALGGWVGP-LSLPNVALIASCCGLIYAVI---- 241
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +P+G +S+GG+ + LF
Sbjct: 242 ----------------TKRGSTTLPFGPCLSLGGMATLYLQALF 269
>gi|323974725|gb|EGB69838.1| type IV leader peptidase [Escherichia coli TW10509]
Length = 155
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 20/155 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVF 69
++ D ++P+R + +L S LL ++G F
Sbjct: 7 FLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLAYALWGAIIGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + +G GDVK L + W WT + G + + +L
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGK 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ G +
Sbjct: 127 ---------------DSLKNPLPFGPFLAAAGFVV 146
>gi|255066087|ref|ZP_05317942.1| type IV prepilin leader peptidase [Neisseria sicca ATCC 29256]
gi|255049632|gb|EET45096.1| type IV prepilin leader peptidase [Neisseria sicca ATCC 29256]
Length = 287
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 25/156 (16%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFCFFAF---- 78
D + +P+ +++ ++ LL + + L + G + + +
Sbjct: 146 FIDADTQYLPDSLTLPLIWLGLLFNLNGTFVPLKSAVLGAVFGYMSLWLLCFIYKLLTGK 205
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
MG GD KLL + W G +F A++G I ++
Sbjct: 206 IGMGNGDFKLLAALGAWLGV-GILPVLVFMAALIGLIGAII------------------- 245
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G ++++ G I + A+
Sbjct: 246 GRVAKGQYFAFGPSLAIAGWIILVANEPVHRAVTWW 281
>gi|323700357|ref|ZP_08112269.1| peptidase A24A prepilin type IV [Desulfovibrio sp. ND132]
gi|323460289|gb|EGB16154.1| peptidase A24A prepilin type IV [Desulfovibrio desulfuricans ND132]
Length = 182
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 15/174 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + LV A ++D+ + I N +++ ++ + L+ + G + +
Sbjct: 1 MDILIVIALATALVTATVTDIRNQRIYNWLTLPLILTGLVAHTVFG-GFAGLKFSAAGFA 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ F + +MG GDVKL+ W G +F +FLF G + R I
Sbjct: 60 LGFAAMALPYFMGVMGAGDVKLMAGVGAWLGVEATFTAFLFTCIAGGVYALAVLAFHREI 119
Query: 127 TNHIPIFGMFVPKSFLMKNKI--------------PYGIAISMGGLISYPDSYL 166
+ F+ K YG+AI++G +++
Sbjct: 120 LKRVLRNITATFSVFMASRKFDFAPVTAENAMPRLCYGVAIAVGTVVAMALFAW 173
>gi|307318078|ref|ZP_07597514.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
gi|306896119|gb|EFN26869.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
Length = 170
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
FL+ + +A + D+ + I NR+ + ++ +F + A G+ + ++V V
Sbjct: 10 AFLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLSLATVMSSVVVASAVLA 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F FA +GGGD KLL +W G + L+ I + + R+
Sbjct: 70 CTFVLFAAGWIGGGDAKLLPVAVLWLGADLALPFILYTSVIGAALTVGLLQLRRVPLPLA 129
Query: 131 PIFGMFVPKSFLMKNKIPYG 150
+ + + IPYG
Sbjct: 130 LKKNAWAKRLLDRETGIPYG 149
>gi|224370124|ref|YP_002604288.1| PilD [Desulfobacterium autotrophicum HRM2]
gi|223692841|gb|ACN16124.1| PilD [Desulfobacterium autotrophicum HRM2]
Length = 258
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 20/172 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-----MDYELIALHL 62
+ + LV + D+ +IP+ +S+ + F + + I
Sbjct: 101 ATLFYFTFAATLVVISFIDIDFQIIPDIISLPGILVFASASVFIPRMDFMDTILGIVAGG 160
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+V ++ + MGGGD+KLL GW + + + ++
Sbjct: 161 GTLYLVALVYYLIRKEEGMGGGDIKLLAMIGGVVGWQGVAFTLFAGSLMGTAGGVIIMVL 220
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R +K KIP+G +S G L+ L
Sbjct: 221 TR---------------LGDVKLKIPFGPFLSAGSLVYIFFGEPIINWYFSL 257
>gi|218530652|ref|YP_002421468.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum
CM4]
gi|218522955|gb|ACK83540.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum
CM4]
Length = 165
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 66/150 (44%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
PF + +AA+SDL + I NRV+ ++L +F+L A GM +ALH+ G +V F
Sbjct: 14 FPFLMAYAAVSDLLTMRISNRVTSLVLFTFVLYALADGMMLAELALHIAAGCLVLAAAFV 73
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
FA +GGGD KL +W G + G + V + +
Sbjct: 74 MFARGWIGGGDAKLAAGATLWLGIEYVAEYLIAASVFGGVLTLVILFARAYPLPMATLRL 133
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F + IPYGIA++ L P +
Sbjct: 134 PFAVNLHDSRTGIPYGIALAAAALTVLPHA 163
>gi|103486619|ref|YP_616180.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
gi|98976696|gb|ABF52847.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
Length = 162
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 14/175 (8%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIAL 60
E+ + + + ++ AA+SD+ S I N +++ M + + G+ + + +
Sbjct: 1 MENGTIALGLMAVLGLMMIAAAVSDIRSRTISNELNVAMAILAVPFWVVSGLTLWPDVPI 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+VF++ FA MGGGDVK++ + +W L +AI GGILS+ +
Sbjct: 61 QFGAALLVFLVFALLFAIGAMGGGDVKMICAVMLWIPLPLVLP-MLMVMAIGGGILSLIM 119
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
L + ++PYG+AI+ GL + YL + +GLS
Sbjct: 120 LIHMK------------LRPSERPVEVPYGVAIAAAGLWALHQHYLNQFQAIGLS 162
>gi|303239929|ref|ZP_07326452.1| peptidase A24A domain protein [Acetivibrio cellulolyticus CD2]
gi|302592639|gb|EFL62364.1| peptidase A24A domain protein [Acetivibrio cellulolyticus CD2]
Length = 267
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 31/173 (17%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------------- 53
V L+ D+ +IP+ + + L + +T
Sbjct: 98 VDLLCSAFLMSILIAVFFIDIDHRIIPDELVVAGLVAGGITIIYNAFFPMKIFGEGGKWW 157
Query: 54 -DYELIALHLLVGLIVFIICFCFFAFN-IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ + L+V +I + + MGGGD+K+ ++ GW +F++ L + +
Sbjct: 158 DPILGMFAGSVTLLVVGLIGMLIYKTDDAMGGGDIKIFAPIGIFLGWKMTFIALLASIVL 217
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
G I + ++ K+ IP+G I MG LI+Y
Sbjct: 218 AGLISLILVIIKVK----------------GRKSTIPFGPFIVMGTLITYLYG 254
>gi|323695018|ref|ZP_08109164.1| prepilin peptidase [Clostridium symbiosum WAL-14673]
gi|323500914|gb|EGB16830.1| prepilin peptidase [Clostridium symbiosum WAL-14673]
Length = 250
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 19/172 (11%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
K V + I L+ ++ D + IP +IV+ + L+ + D+ +
Sbjct: 95 KNGFTVTGICYAIAASSLLVLSVIDWRTFEIPVGCNIVIGTAGLVNLWFNRQDWLTYMIG 154
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L+ + ++ MGGGDVKL+ + + GW L+F + I V +
Sbjct: 155 LICVSGLLLLILLLSKGRAMGGGDVKLMAAAGLLLGWQNVILAFACGCILGSVIHLVLM- 213
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALM 172
K + + +G +S G S L + +
Sbjct: 214 -----------------KIQGKERMLAFGPYLSAGIWFSMMWGQELIQWYIN 248
>gi|55977893|sp|Q9ZF70|LEP4_BURPS RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
Length = 275
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 121 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 180
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW +
Sbjct: 181 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQV----------------VL 224
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + +P+G ++ GG + F + L G
Sbjct: 225 IAAVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 275
>gi|298490302|ref|YP_003720479.1| prepilin peptidase ['Nostoc azollae' 0708]
gi|298232220|gb|ADI63356.1| Prepilin peptidase ['Nostoc azollae' 0708]
Length = 273
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 31/183 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA------- 59
+ + + L+ + D + +P+ ++ L L+ G E
Sbjct: 102 ILTIGYWAFCSWLLALSFIDWDTMTLPHPLTKSGLLLGLVFQIGFGFLLEPSLVSVVKRL 161
Query: 60 -LHLLVGLIVFII-------CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ ++ + + +MG GD KL W GW ++ +
Sbjct: 162 IFGIGGAVLGLWLFDSISILGSLIYGKPVMGAGDAKLAAMMGTWLGWQHLLIACFIACFL 221
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ I+ R + K+P+G +++G +I+
Sbjct: 222 GVLVGGGVIVRSR----------------HKIGEKMPFGPFLALGAVITLFTGQGILSYY 265
Query: 172 MGL 174
+ L
Sbjct: 266 LRL 268
>gi|117923339|ref|YP_863956.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Magnetococcus sp. MC-1]
gi|117607095|gb|ABK42550.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Magnetococcus sp. MC-1]
Length = 265
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 25/160 (15%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAF-----LLGMDYELIALHLLVGLIVFIICFCFFAFN 79
D+ ++PN ++ +L ++ + L ++VG ++ +
Sbjct: 119 IDMEKRILPNIITYPLLVVGVVCSALPMLGSPFPSMGDALLGMVVGAGGLLVLIEVWYRV 178
Query: 80 ----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
MG GDVKL+ + W GW + +F A+LG ++ L
Sbjct: 179 TGRVAMGLGDVKLVGVLSAWLGWQ-ALYFIIFGSALLGVVVGGGWLI------------- 224
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ IP+G +++ I FK +
Sbjct: 225 --WGGKEKQTPIPFGPFLALSAWIYLFLDESFKQGYLLWM 262
>gi|293115690|ref|ZP_06604570.1| type IV prepilin peptidase [Butyrivibrio crossotus DSM 2876]
gi|292808812|gb|EFF68017.1| type IV prepilin peptidase [Butyrivibrio crossotus DSM 2876]
Length = 209
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 61/168 (36%), Gaps = 18/168 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V S + + L+ ++ D + IP ++I +L ++ ++ + ++
Sbjct: 58 VTSICYALSVSMLIALSVIDWRTYEIPFGLNIAILVFGIINMAFNYKNFLYYLIGMVCVS 117
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ + +GGGD+KL+ + + GW L+ + I I + +
Sbjct: 118 GFLLLLYLITKGRGIGGGDIKLMAAAGLLLGWKHIILALILGCIIGSVIHIILM------ 171
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K + +G +S+G +IS +G+
Sbjct: 172 ------------KVSDKGRMLAFGPYLSVGIVISMLCGDRLLNWYLGI 207
>gi|298530675|ref|ZP_07018077.1| peptidase A24A domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510049|gb|EFI33953.1| peptidase A24A domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 256
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 19/163 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ +++ L+ A+ DL ++P+ +++ +F+L + + L L+G
Sbjct: 100 LEWLAYMLFFGLLIVASFIDLKIYILPDIITLPGALLAFGASFILPVFWLDALLGALLGA 159
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+F + +G GD+KL+ GW +F A+ G S+ +
Sbjct: 160 GLFWSLQWAYRTFKKVEGLGTGDIKLMLMLGALVGWQG-LPIQIFAAALTGLAASLIYMK 218
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
M+ IP+G +++G +I
Sbjct: 219 K--------------TPGGGMQTPIPFGPFLALGAVIYILAGE 247
>gi|297544542|ref|YP_003676844.1| Prepilin peptidase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842317|gb|ADH60833.1| Prepilin peptidase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 252
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 16/165 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ L+ + D+ ++PN++ +V ++ L+ + + L+
Sbjct: 100 AFSYMFIAAILIAESFIDIDYKIVPNKIILVGFIGGIIFRILMYNYGLIDYIVGLILGGG 159
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ + MGGGD+KL+ + GW + L LF I+G + V ++ +++
Sbjct: 160 ILFLISLISGGEMGGGDIKLMALIGFFIGWKLTIL-VLFLSVIIGALGGVILVALKIKGG 218
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ IP+ IS+ IS Y +
Sbjct: 219 ---------------KDYIPFVPYISIAWFISILYGYEILNYYIK 248
>gi|299532590|ref|ZP_07045979.1| peptidase A24A, prepilin type IV [Comamonas testosteroni S44]
gi|298719393|gb|EFI60361.1| peptidase A24A, prepilin type IV [Comamonas testosteroni S44]
Length = 196
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 18/162 (11%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMGGG 84
DL + IPNR++ LL L L + + + + +G G
Sbjct: 36 DLRTRRIPNRLTFGGAALALLYGLLAPHPHTGGFFWALGGMAVGLALMLPLYLLHALGAG 95
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN---------------- 128
DVKL+ + G ++ + LF G + ++L R
Sbjct: 96 DVKLMAMVGSFLGPVAAWQTVLFVFITGGLVAITYVLWHRTSGKLVRNSAEAMQLLYVNV 155
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
I S +PYG++I++G L ++ + F
Sbjct: 156 AAGIRPDARSNSAHSVGTLPYGVSIALGTL-AFLVARQFTWV 196
>gi|22298019|ref|NP_681266.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Thermosynechococcus elongatus BP-1]
gi|22294197|dbj|BAC08028.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Thermosynechococcus elongatus BP-1]
Length = 248
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 22/154 (14%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLG------MDYELIALHLLVGLIVFIICFCFFAF 78
DL + +P+ ++ L + LL L + + + ++ F
Sbjct: 101 IDLDTMTLPHPLTKWGLITGLLARGLTTGLGGITEGIIAAVIGIWLFDLIRWGGAIAFNQ 160
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+MGGGD KL W GW ++F A+ G + I
Sbjct: 161 EVMGGGDGKLAAMIGAWLGWQGLLVTFFLACALGGLMGGFGIALG--------------- 205
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ IP+G +++ + S +
Sbjct: 206 -WIQRRQPIPFGPFLAVAAIFSGLFGRQLIHLYL 238
>gi|300390210|gb|ADK10913.1| PilD [Thermoanaerobacterium saccharolyticum]
Length = 262
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 16/168 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S + L+ + D+ +IPN++ ++ L + + +
Sbjct: 108 IKSLSYAFLASLLIVISFIDMEHKIIPNKIILIGLIVGASFRLITINYGVWDYIVGFLVG 167
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ + MGGGD+KL+ ++ GW + + LF +LG I V ++ ++
Sbjct: 168 GGVLLLISLLSGGGMGGGDIKLMAMIGLFVGWKLTVST-LFLAVVLGAIGGVALILFKIK 226
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K+ IP+G IS+G +IS Y + L
Sbjct: 227 ---------------TRKDYIPFGPYISIGCVISILYGYDLLNLYIKL 259
>gi|56421160|ref|YP_148478.1| signal peptidase [Geobacillus kaustophilus HTA426]
gi|56381002|dbj|BAD76910.1| signal peptidase (late competence protein) [Geobacillus
kaustophilus HTA426]
Length = 248
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 58/167 (34%), Gaps = 18/167 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
V L +SDL +IP+RV +V G FL+ ++ + + L VG
Sbjct: 97 LIVAWTLISLLAIIVVSDLRYMLIPDRVLLVFAGLFLMERLVIPFLPWVDMLLGAAVGFS 156
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + + MGGGDVKL GW L+F I + + R
Sbjct: 157 LLWLIAVL-SNGGMGGGDVKLFAVLGFVLGWKMVLLAFFLATLYGTIIGLIGMALGR--- 212
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+ AI++G L + A M L
Sbjct: 213 -------------VRRGKPMPFAPAIALGSLTALFFGDQLVDAYMDL 246
>gi|281417571|ref|ZP_06248591.1| peptidase A24A domain protein [Clostridium thermocellum JW20]
gi|281408973|gb|EFB39231.1| peptidase A24A domain protein [Clostridium thermocellum JW20]
Length = 281
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 31/175 (17%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-------------GMDYELIALH 61
L+ DL +IPN++ +V L +L +
Sbjct: 120 LMSVLIAVFFIDLDHMIIPNKLVVVALVGGVLPFVYNIFRPMDIYVDRKWWNPLLGAFIG 179
Query: 62 LLVGLIVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+V I+ + + MGGGDVKL ++ GW + ++ G + V +
Sbjct: 180 FGFLLLVAIVGYLVYKTDEAMGGGDVKLFAPIGLFLGWKMTIVALFISFVSAGIVSIVLL 239
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVALMGL 174
L + + +G I MG +Y L + L L
Sbjct: 240 LLKKKERRSTFV----------------FGPFIVMGTFFTYLFGWELLEWYLSTL 278
>gi|317054337|ref|YP_004118362.1| Prepilin peptidase [Pantoea sp. At-9b]
gi|316952332|gb|ADU71806.1| Prepilin peptidase [Pantoea sp. At-9b]
Length = 251
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 22/158 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFI 70
L L+ +L D+ ++P+ V++ +L LL + L + VG +
Sbjct: 108 LFFCGSLLVLSLIDIRHYLLPDAVTLPLLWCGLLLHCCAILPGSLSDAVLGVAVGYVSLA 167
Query: 71 ICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ +G GD KLL + A W GW + + L + G + ++
Sbjct: 168 VLAHAYHWLRQQQGLGMGDAKLLAAIAAWTGWQ-ALPNVLIIASSGGILFALI------- 219
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ I +G +++ G+ + +S
Sbjct: 220 --------SRNLWPQRVRQTIAFGPWLALAGISLFINS 249
>gi|52786668|ref|YP_092497.1| hypothetical protein BLi02936 [Bacillus licheniformis ATCC 14580]
gi|163119575|ref|YP_080080.2| DNA-binding protein [Bacillus licheniformis ATCC 14580]
gi|18266361|gb|AAL67522.1|AF459915_2 late competence protein ComC [Bacillus licheniformis]
gi|52349170|gb|AAU41804.1| ComC [Bacillus licheniformis ATCC 14580]
gi|145903084|gb|AAU24442.2| DNA-binding protein [Bacillus licheniformis ATCC 14580]
Length = 249
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L L+ +SD+ +IP+ V L F + FL+ ++ +L +
Sbjct: 96 ELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGG 155
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + +G GDVKL + G L+F A + + +L ++
Sbjct: 156 MLPLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKK 215
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
N +P+ AI G L S + +
Sbjct: 216 NE----------------PMPFAPAILAGTLTSCFYGEPMIEWYLQTA 247
>gi|294668187|ref|ZP_06733294.1| type IV prepilin leader peptidase [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309895|gb|EFE51138.1| type IV prepilin leader peptidase [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 293
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 26/156 (16%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLVGLIVFI 70
I L+ D + +P+ ++ ++ LLT +D + L + G +
Sbjct: 139 FIFSAILIVLTFIDADTQYLPDELTNPLIWLGLLTNSTGNGLVDLKQSLLGAVFGYLSLW 198
Query: 71 ICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + +GGGD KLL + W G + + AI+G + +V + +
Sbjct: 199 LLNKIHKTIRGIDGIGGGDFKLLAALGAWLG-SLVLPIIVLVAAIIGILAAVVMKVAK-- 255
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
I +G ++++ G + +
Sbjct: 256 -----------------SQPIAFGPSLAIAGWVVFI 274
>gi|229084393|ref|ZP_04216673.1| Peptidase A24A domain protein [Bacillus cereus Rock3-44]
gi|228698933|gb|EEL51638.1| Peptidase A24A domain protein [Bacillus cereus Rock3-44]
Length = 240
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
L+ ++DLF +IPN + + SFL+ + + + + +
Sbjct: 97 ELIFIWTLLSLLIIITMTDLFYMLIPNIILVFFACSFLIERIFIPLVPWWDSLIGGGIIC 156
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
IV F N +GGGDVKLL+ G + F ++ L + +L R
Sbjct: 157 IVLYFAQIIF-PNGLGGGDVKLLSLLGFIVGVKAILIVLCFASSLGLCFLGIGMLLKR-- 213
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
+ +P+G I++G
Sbjct: 214 --------------MTARQPLPFGPFIALG 229
>gi|319647202|ref|ZP_08001424.1| late competence protein ComC [Bacillus sp. BT1B_CT2]
gi|317390549|gb|EFV71354.1| late competence protein ComC [Bacillus sp. BT1B_CT2]
Length = 249
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L L+ +SD+ +IP+ V L F + FL+ ++ +L +
Sbjct: 96 ELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGG 155
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + +G GDVKL + G L+F A + + +L ++
Sbjct: 156 MLPLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKK 215
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
N +P+ AI G L S + +
Sbjct: 216 NE----------------PMPFAPAILAGTLTSCFYGEPMIEWYLQTA 247
>gi|329118205|ref|ZP_08246915.1| type IV prepilin leader peptidase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465626|gb|EGF11901.1| type IV prepilin leader peptidase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 293
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 55/156 (35%), Gaps = 26/156 (16%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLVGLIVFI 70
L+ L+ D + +P+ +++ ++ LL + + + + + G +
Sbjct: 139 LVFTAMLIALTFIDADTQYLPDELTLPLIWLGLLANYGGNGLVSLQQAVVGAVCGYMSLR 198
Query: 71 ICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + +GGGD KLL + W +F AI+G + ++ +
Sbjct: 199 LLNAAHKAVRGIDGVGGGDWKLLAALGAWL-GAAVLPVVVFAAAIVGCVAALVM------ 251
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
K + +G +++ G + +
Sbjct: 252 -------------RVRQKEPMAFGPCLAIAGWLVFI 274
>gi|145588372|ref|YP_001154969.1| peptidase A24A, prepilin type IV [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046778|gb|ABP33405.1| peptidase A24A, prepilin type IV [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 166
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 23/166 (13%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLVGLIVFI 70
+ L++ A D + + +RV++ +L L+ + + ++G F
Sbjct: 13 LFILALIYLAYQDARTFRLSDRVTLPLLVLGLVFNSFDSTRLVSFPDALTGAILGYSFFW 72
Query: 71 ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + N +G GD KLL + W G+ + + A+ G + L V+
Sbjct: 73 LMNFLYRLIKKQNGIGMGDAKLLAALGAWLGF-NALPDVILIAALSGTLGGFIWLKVQDQ 131
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ + P+G ++ G+I + + ++
Sbjct: 132 RH---------------RAPFPFGPFLAFAGIIELLWPHFLQTFIL 162
>gi|78060317|ref|YP_366892.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383]
gi|77964867|gb|ABB06248.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383]
Length = 180
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 17/164 (10%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V L V AA +D+ + IPNR+ ++ L L++ +L + L F
Sbjct: 10 VPLCVTLLAVAAASTDIATRRIPNRLVLLGLAGALVSQCMLHGVLAGVLGWLAGAATGFA 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F+ M GDVKL+ + W G +F + + GGI ++ +R +
Sbjct: 70 LLLPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQM 128
Query: 131 PIFGMFVPKSFLMKNK----------------IPYGIAISMGGL 158
+ + +PYG+AI+ G L
Sbjct: 129 WANVRALIARRRSQGASDEAAGSPVEIASVGTLPYGVAIAAGTL 172
>gi|212635456|ref|YP_002311981.1| peptidase A24A, prepilin type IV [Shewanella piezotolerans WP3]
gi|212556940|gb|ACJ29394.1| Peptidase A24A, prepilin type IV [Shewanella piezotolerans WP3]
Length = 187
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 14/184 (7%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
+++ S +I V A SDL IPN + ++ + + + +
Sbjct: 2 TELQLSIQVVIAGVFFVLAISSDLSKERIPNWLCLLAIFLGFAVNSYFAQ-LSGLLVSFV 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ FI+ F F I+G GD+KL+ G T + + I G + S+ ++
Sbjct: 61 GFSLAFILLFPTFILRILGAGDIKLMMGIGAIMGPT-LLAWSILYAVIAGALTSILLIAW 119
Query: 124 RMITNHIPIFGMFVPKSFLMKN------------KIPYGIAISMGGLISYPDSYLFKVAL 171
+ + I F ++ K+PY A+++G L + +
Sbjct: 120 KTGLSGIKKTAKRYWDCFYLRTYFKPEQGEAAGEKVPYAPALALGWLWACSLNPQISQLY 179
Query: 172 MGLS 175
+S
Sbjct: 180 NSIS 183
>gi|103485821|ref|YP_615382.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
gi|98975898|gb|ABF52049.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Sphingopyxis alaskensis RB2256]
Length = 260
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 20/164 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVF 69
++ + + L+ AL D +P+R+++++ + +L A +LG + LVG
Sbjct: 112 LWALFGWLLLPLALLDARHFWLPDRLTLLLAVTGVLLAGPMLGTSLVDRWVGALVGGGTL 171
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ +A MGGGD KL+ +T W GW L +A LGGI+ ++ +
Sbjct: 172 ALLAWLYARARRREGMGGGDPKLVAATGAWLGWQALPLML--LLASLGGIIWALVVQRKG 229
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ ++P+G+ + + P L
Sbjct: 230 DQPLG-------------ERRVPFGMFLCGAAFAAVPLWPLIAR 260
>gi|153003554|ref|YP_001377879.1| peptidase A24A domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152027127|gb|ABS24895.1| peptidase A24A domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 290
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 14/183 (7%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA---FLLGMDYELIALHLLV 64
+ L LV A DL + ++P+ ++ +L + LL + + + V
Sbjct: 106 EAGAELAFVATLVALAFIDLDTWLLPHVITWPLLAAGLLASLLGWSAASTFPSSLWGAAV 165
Query: 65 GLIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G VF +G GDV LL W G L + +
Sbjct: 166 GWGVFAALSWGGEKVLKKEALGFGDVWLLGGLGAWLGLGALLPVVLLASIQGSVVGIALV 225
Query: 121 LTVRMITNHIPIFGMFVPKSFL-------MKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
L + T +N +P+G +++G + + L A
Sbjct: 226 LLGKAETGERRANEAPAADESAADEDWVPPRNAVPFGPFLALGAVEWLYGADLLARAFPA 285
Query: 174 LSA 176
L A
Sbjct: 286 LGA 288
>gi|124262844|ref|YP_001023314.1| prepilin peptidase [Methylibium petroleiphilum PM1]
gi|124262090|gb|ABM97079.1| Prepilin peptidase [Methylibium petroleiphilum PM1]
Length = 311
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 21/163 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGL 66
+ ++ LV A DL + ++P+ +++ +L + L + L + L + G
Sbjct: 154 ATLLWCAFAAALVVLAAIDLETQLLPDAITLPLLWAGLAASALGATIPPADALLGAVAGY 213
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + F +G GD KLL + VW GW + L
Sbjct: 214 LSLWSVYWAFRLATGQEGIGYGDFKLLAALGVWLGWQMILPIIVIAALFGALAALAIRLA 273
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
R + +IP+G + G L+
Sbjct: 274 GRSVGGL----------------RIPFGPFLVAGALLVLFAGP 300
>gi|229004160|ref|ZP_04161961.1| Peptidase A24A domain protein [Bacillus mycoides Rock1-4]
gi|228757021|gb|EEM06265.1| Peptidase A24A domain protein [Bacillus mycoides Rock1-4]
Length = 260
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 18/152 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ ++DLF +IP+ + F++ + + + +
Sbjct: 117 ELILIWTLFSLLIIITMTDLFYMLIPDVILFSFACLFVIEHIFISLVPWWEGLIGGGTIF 176
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
IV + F N +GGGDVKLL+ G F+ ++ + +L R
Sbjct: 177 IVLYLVQILF-PNGLGGGDVKLLSLLGFIIGAKAIFIVLCCASSLSLCFFGIGMLLKR-- 233
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ +P+G I++G +
Sbjct: 234 --------------ITSRQPLPFGPFIALGTI 251
>gi|264678240|ref|YP_003278147.1| peptidase A24A, prepilin type IV [Comamonas testosteroni CNB-2]
gi|262208753|gb|ACY32851.1| peptidase A24A, prepilin type IV [Comamonas testosteroni CNB-2]
Length = 196
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 49/151 (32%), Gaps = 17/151 (11%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMGGG 84
DL + IPNR++ + LL L L + + + + MG G
Sbjct: 36 DLRTRRIPNRLTFGGITLALLYGLLAHHPHSGGFFWALGGMAVGLALMLPLYLLHAMGAG 95
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN---------------- 128
DVKL+ + G + +F G + L RM
Sbjct: 96 DVKLMAMVGSFLGPAATCQVVIFVFITGGLAAISYALWHRMAGKLLRNSAEAVQLLYVNV 155
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
I S +PYG++I++G L
Sbjct: 156 AAGIRPDARSNSAHSVGTLPYGVSIALGTLA 186
>gi|241589882|ref|YP_002979907.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
gi|240868594|gb|ACS66253.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
Length = 246
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 5/130 (3%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIV 68
+F++ L AAL D +IP+ + +L LL + + + G
Sbjct: 93 GLFVLYASMLTTAALVDAEHQIIPDVIVFPLLWGGLLINCAGTFAPLQSAVIGAVTGYCA 152
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F + M GD K+ + W G + + + + +L
Sbjct: 153 LGGLNFLFQLAAGQSGMYKGDFKMFAAIGAWGGSQTLVTVLSGALLLFSVVTGIRMLARS 212
Query: 125 MITNHIPIFG 134
P
Sbjct: 213 DGHRETPFGP 222
>gi|170079198|ref|YP_001735836.1| type 4 prepilin peptidase [Synechococcus sp. PCC 7002]
gi|169886867|gb|ACB00581.1| type 4 prepilin peptidase [Synechococcus sp. PCC 7002]
Length = 275
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 30/180 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLL 63
+ + F LV AL D + +PN ++ L LL LG + L+
Sbjct: 107 LEAIAAFTLLFWLVALALIDYDTFTLPNPLTQSGLVLGLLFQMGLGFQANGFPGAIYGLM 166
Query: 64 VGLIVFIICFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
G+ ++ MGGGD KLL W GW L+ + A+
Sbjct: 167 GGIGAAVLGLWLLDGIGVIGSAVLGQEAMGGGDPKLLAMIGAWLGWQNVLLTVILACALG 226
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
I+ + + +P+G +++G +IS +
Sbjct: 227 TMIIGGAMGLGK----------------HQRGQHLPFGPFLALGAIISLFWGDRLIELYL 270
>gi|197295150|ref|YP_002153691.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
J2315]
gi|195944629|emb|CAR57233.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
J2315]
Length = 179
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 16/169 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V L V AA +D+ + IPNR+ ++ L L+ LL + L F
Sbjct: 10 VPLCVTLLAVAAASTDIATRRIPNRLVLLGLVGALIAQCLLHGVPAGVLGWLAGAATGFG 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F+ M GDVKL+ + W G +F + + GGI ++ +R +
Sbjct: 70 LLLPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQM 128
Query: 131 PIFGMFV---------------PKSFLMKNKIPYGIAISMGGLISYPDS 164
+ P +PYG+AI+ G L S
Sbjct: 129 WANVRTLIVRRSPAARAEADDGPAGITSVGTLPYGVAIAAGTLGMLFAS 177
>gi|317154607|ref|YP_004122655.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2]
gi|316944858|gb|ADU63909.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2]
Length = 181
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 15/168 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + L A ++D+ I N ++ ++ S L L + + L
Sbjct: 1 MDHLIATMLVAALAVATVTDIRRQRIYNWLTFPLILSGLAAH-TLHAGLDGLLLSSGGFA 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F +MG GDVKL+ W G +F +FLF G V +
Sbjct: 60 LGLGVMVVPFFLGLMGAGDVKLMAGVGAWLGAQAAFTAFLFTCLAGGFYAVVVLARHFDQ 119
Query: 127 TNHIPIFGMFVPKSFLMKNKI--------------PYGIAISMGGLIS 160
+ + + YG+AI++G + +
Sbjct: 120 FKAVLVNIWATFLLAASTRRFEYTPVVEAQSMPRLCYGVAIAVGTVAA 167
>gi|94309595|ref|YP_582805.1| peptidase A24A, prepilin type IV [Cupriavidus metallidurans CH34]
gi|93353447|gb|ABF07536.1| flp pilus assembly leader peptidase CpaA [Cupriavidus metallidurans
CH34]
Length = 167
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 49/153 (32%), Gaps = 2/153 (1%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
I ++ AA +DL IPN ++ L + + L L I
Sbjct: 14 IVIAVVLTAAATDLQRRRIPNWLTFGAWLVALPVQMTIHGLAAGASTWALGWLTGLGIFL 73
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT--VRMITNHIP 131
+ M GDVKL+ + W G + + L I G +L
Sbjct: 74 PIYLLRGMAAGDVKLMAAVGAWLGASLAASIALASFVIGGVWALTLVLASGKGRQVVRNL 133
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ +PYG+AI+ G L S
Sbjct: 134 GGIALTGQGGASVGSLPYGVAIAAGTLTMLFAS 166
>gi|291278545|ref|YP_003495380.1| type IV prepilin peptidase [Deferribacter desulfuricans SSM1]
gi|290753247|dbj|BAI79624.1| type IV prepilin peptidase [Deferribacter desulfuricans SSM1]
Length = 258
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 20/173 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S + L+ A +D + +IP+ +S+ + ++ L + L+ L
Sbjct: 103 LISLLICAGIIDLITALDNDFETGIIPDEISLGGIPVGIIFGILQKKLIISLIGGLVGFL 162
Query: 67 IVFIICFC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
++FI F F MGGGD+KL + G+ P F + I FI
Sbjct: 163 LLFIPGFVYKLFTGKEGMGGGDIKLFAMIGTFLGYKPLFFILFLSSFVGATIGLFFIYLF 222
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+ + IP+G I + +I + + A
Sbjct: 223 K-----------------NREYPIPFGPFIGLATIIYIFFGDYIIQTYLKMIA 258
>gi|326390176|ref|ZP_08211737.1| Prepilin peptidase [Thermoanaerobacter ethanolicus JW 200]
gi|325993824|gb|EGD52255.1| Prepilin peptidase [Thermoanaerobacter ethanolicus JW 200]
Length = 252
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 16/165 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ L+ + D+ ++PN++ I ++ L+ L + L+
Sbjct: 100 AFSYMFLASILISISFIDMEHKIVPNKIIIAGFVGAIIFRLLMYNYGFLDYVLGLILGGG 159
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ + MGGGD+KL+ + GW + L LF I+G + ++ +++
Sbjct: 160 ILLLISLISGGEMGGGDIKLMALIGFFIGWKLTIL-VLFLSVIIGALGGAILVALKIKG- 217
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ IP+ IS+ IS Y +
Sbjct: 218 --------------RKDYIPFAPYISIAWFISILYGYEILNYYIK 248
>gi|227818613|ref|YP_002822584.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234]
gi|227337612|gb|ACP21831.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234]
Length = 170
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 72/170 (42%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
S FL+ + +A + D+ + I NR+ +L +F + A L G+D +I
Sbjct: 1 MISTTATWLAFLLFAGTMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSS 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+LV V F FFA +GGGD KLL +W G + + + + +
Sbjct: 61 ILVASAVLAFTFTFFALGWIGGGDAKLLPVAVLWLGAGLALPFVVCASVLGAVLTLSLMQ 120
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+M + + + + IPYG A++ L+ P+S+ F L
Sbjct: 121 FRKMPLPVLLQKRAWSSRLHTPQTGIPYGAAMAPAALLLLPESHWFAALL 170
>gi|325569595|ref|ZP_08145642.1| competence protein ComC [Enterococcus casseliflavus ATCC 12755]
gi|325157151|gb|EGC69316.1| competence protein ComC [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 20/149 (13%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCFFAF 78
+ SD+F +IPN+V + + + + + + G + +
Sbjct: 119 IISASDIFYQLIPNKVLVPFFAGGIGLRLIQPQNEFWWYWLVGFFAGFLPLYLLAELSKK 178
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
MGGGD+KL V+ G + + +L +
Sbjct: 179 -GMGGGDIKLFAVLGVYIGPVQVLTVLFVASCLAVIFYVIQMLRGK-------------- 223
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ I +G I++ + Y S F
Sbjct: 224 ---VKSRYIAFGPFIAIATGMVYLGSGWF 249
>gi|148976665|ref|ZP_01813352.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3]
gi|145964016|gb|EDK29274.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3]
Length = 176
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ L+ ++ D+ +IPNR+ I+++ + ++ G ++ +A+ ++ F
Sbjct: 6 LVFWALLIVISVFDVKENIIPNRILILLVFIYFISLINGGFTWDSLAVSFFGLVVFFFSG 65
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ M GDVKLL ++ GW F + G I + ++L
Sbjct: 66 LALYFLRAMSPGDVKLLGVIGLYIGWGSLLDVSYFILISSGVIGTFYLL 114
>gi|91204076|emb|CAJ71729.1| similar to type IV prepilin-like proteins leader peptide processing
enzyme [Candidatus Kuenenia stuttgartiensis]
Length = 262
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 43/185 (23%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG------------------- 52
+L L+ +A DL +IPN ++ + + F++ + +
Sbjct: 82 YLALCCALIISAFVDLELRIIPNEITFIGIPVFVVLSIVCPDLHHAQNTLRRFTFIDIHR 141
Query: 53 -----MDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
I + + ++ F + MG GDVKL+ GW + ++ F
Sbjct: 142 LDSFIASLIGIFTGGGLIFLCGVMGKLLFKKDAMGFGDVKLMGMIGAVVGWKLA-VAVFF 200
Query: 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
G ++++ + + IPYG +S+ L+ F
Sbjct: 201 VAPFFGLLMAIPVFVFKKSHL------------------IPYGPFLSIAALVCICFQDYF 242
Query: 168 KVALM 172
+
Sbjct: 243 IGQIN 247
>gi|85860185|ref|YP_462387.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Syntrophus aciditrophicus SB]
gi|85723276|gb|ABC78219.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Syntrophus aciditrophicus SB]
Length = 258
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 21/170 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-FLLTAFLLGMDYELIAL 60
K + I L+ D+ +IP+ +S+ + FL+ F++ + + L
Sbjct: 95 KFGLTLKFLAAFIFVSALILITFIDIDYQIIPDVISLPGIPICFLMAVFIMDLSFMDALL 154
Query: 61 HLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
LL+G + + MGGGD+KLL + GW S L L +++G ++
Sbjct: 155 GLLIGGGSLYLVAVLYELATKREGMGGGDIKLLALMGAFLGWK-SLLFILLVSSLVGAVV 213
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ I+ R MK +P+G +S+ +
Sbjct: 214 GISIMLARGG---------------DMKYAVPFGPFLSLAAVAYLFVGEY 248
>gi|296103132|ref|YP_003613278.1| general secretion pathway protein O [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057591|gb|ADF62329.1| general secretion pathway protein O [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 265
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 23/156 (14%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVGLIVFI 70
+ L+ A D ++P+ ++ +L + LL A + G +
Sbjct: 120 LWVLWCGLLPLAAIDAKHMLLPDCLTQPLLWAGLLNHALFHTLPLSDALFGAAAGYLSLW 179
Query: 71 ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F +G GD KLL + W GW L + VF V+
Sbjct: 180 LLYWAFRLTTGREGLGYGDFKLLAALGAWCGWQALPSLLLAAALSGIALYFVFYKAVKEN 239
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ IP+G +S+ GL+ +
Sbjct: 240 SV------------------IPFGPLLSLAGLVIFI 257
>gi|228990408|ref|ZP_04150373.1| Peptidase A24A domain protein [Bacillus pseudomycoides DSM 12442]
gi|228768934|gb|EEM17532.1| Peptidase A24A domain protein [Bacillus pseudomycoides DSM 12442]
Length = 260
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 18/152 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ ++DLF +IP+ + F++ + + + +
Sbjct: 117 ELILIWTLLSLLIIITMTDLFYMLIPDVILFSFACLFVIEHIFISLVPWWEGLIGAGTIF 176
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
IV + F N +GGGDVKLL+ G F+ ++ + +L R
Sbjct: 177 IVLYLVQILF-PNGLGGGDVKLLSLLGFIIGAKAIFIVLCCASSLSLCFFGIGMLLKR-- 233
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ +P+G I++G +
Sbjct: 234 --------------ITSRQPLPFGPFIALGTI 251
>gi|297201611|ref|ZP_06919008.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
29083]
gi|297147933|gb|EDY55052.2| radical SAM domain-containing protein [Streptomyces sviceus ATCC
29083]
Length = 391
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 24/149 (16%)
Query: 26 DLFSAMIPNRVSIVMLGSF------LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
DL +P+ +++ + + + + L + + +
Sbjct: 257 DLRVRRLPDPLTLPLAAAALALLGVVSFVPEHTGSWSHALFGALALGAGYWVLWRVN-PG 315
Query: 80 IMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GDVKL GW + L F +LG + ++ V
Sbjct: 316 GMGFGDVKLALGAGAVLGWYGWDTVLLGTFAGFLLGALYGGALVLVGKAG---------- 365
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSYL 166
K IP+G + G
Sbjct: 366 -----RKTAIPFGPFLITGAYAGLLIGAY 389
>gi|328952517|ref|YP_004369851.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM
11109]
gi|328452841|gb|AEB08670.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM
11109]
Length = 168
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
+DL IPN +++ + L ++ E + + L ++ + FFA MGG
Sbjct: 17 YTDLRWRRIPNVLTVSGALAGLALNMIILGPTEGLRIACLGLVVGLALLLPFFALGGMGG 76
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
GDVKLL + W G F + + A+ GGI S+ +L ++ +
Sbjct: 77 GDVKLLAALGAWVGPGRVF-NIFLYAALAGGIASIIMLALQGRRAN 121
>gi|319937244|ref|ZP_08011651.1| prepilin peptidase [Coprobacillus sp. 29_1]
gi|319807610|gb|EFW04203.1| prepilin peptidase [Coprobacillus sp. 29_1]
Length = 261
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 18/164 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + + L+ + D + +IPN + I L +++ L + + + +
Sbjct: 110 TLISFVFSMILLTICMIDYDTMIIPNGLVICCLIVAIVSVPFLDLSLMDRIIGFFIISVP 169
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
I + GGGD+KLL + + GW + V I G +LT R
Sbjct: 170 LYIMNLI-IPDCFGGGDIKLLAVSGLLMGWINVLIGMFIAVLIAGIYAGYLLLTHR---- 224
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVAL 171
K I +G I G ++ LFK L
Sbjct: 225 ------------IDRKGHIAFGPYICFGVFVALLYGQELFKWYL 256
>gi|150391213|ref|YP_001321262.1| peptidase A24A domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149951075|gb|ABR49603.1| peptidase A24A domain protein [Alkaliphilus metalliredigens QYMF]
Length = 257
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 21/163 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-- 59
K + +L+ L+ D +IP+ + ++ L +
Sbjct: 93 KYGLSIHLLFYLLLTSLLICITFIDYDHQIIPDGIVLLGFAFGLAYKLTALILLNQSVEI 152
Query: 60 ---LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+ L+ + + MGGGD+KL+ WFGW L I I
Sbjct: 153 LSSITGLLVGGGLFLLIAIISNGGMGGGDIKLMGMLGFWFGWRGILLISFLSFIIGSIIS 212
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ K K+ IP+G I++ I
Sbjct: 213 IFLL----------------GTKLKTRKDPIPFGPFIAISTFI 239
>gi|228996509|ref|ZP_04156148.1| Peptidase A24A domain protein [Bacillus mycoides Rock3-17]
gi|228763141|gb|EEM12049.1| Peptidase A24A domain protein [Bacillus mycoides Rock3-17]
Length = 260
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 18/152 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ ++DLF +IP+ + F++ + + + +
Sbjct: 117 ELILIWTLLSLLIIITMTDLFYMLIPDVILFSFACLFVIEHIFISLVPWWEGLIGGGTIF 176
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
IV + F N +GGGDVKLL+ G F+ ++ + +L R
Sbjct: 177 IVLYLVQILF-PNGLGGGDVKLLSLLGFIIGAKAIFIVLCCASSLSLCFFGIGMLLKR-- 233
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ +P+G I++G +
Sbjct: 234 --------------ITSRQPLPFGPFIALGTI 251
>gi|23016177|ref|ZP_00055936.1| COG4960: Flp pilus assembly protein, protease CpaA
[Magnetospirillum magnetotacticum MS-1]
Length = 160
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ ++ L+ AA DL S I NRV + +L +F+ A G D HL G
Sbjct: 4 IILILSAMVFVAALLDAAWGDLRSLRIRNRVPLTILAAFVPWALCAGYDGGQWLAHLGTG 63
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++ F+ F+ + GGGD KL+ + +W G + FL +A+ GG++++ L VR
Sbjct: 64 VLCFVAAAILFSLGLWGGGDAKLVPAVVLWVGPSD-LPRFLLIMAVAGGLVALAALVVRR 122
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
P M+ IPYGIAI+ GGL
Sbjct: 123 AEAGGPHPV--------MRGHIPYGIAIAAGGL 147
>gi|332800430|ref|YP_004461929.1| Prepilin peptidase [Tepidanaerobacter sp. Re1]
gi|332698165|gb|AEE92622.1| Prepilin peptidase [Tepidanaerobacter sp. Re1]
Length = 249
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L+ +A +DL +IP++V + LL L+ L L V I
Sbjct: 102 LISSLIVSAFTDLEYQIIPDKVVLTTAVIGLLLNILIHGKDVLYYLMGSVLGGGTIFLIA 161
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F+ MGGGD+KL + ++ G + LS L ILG + ++ +++
Sbjct: 162 AFSQGGMGGGDIKLFAAVGLFLGMRLTLLSLLLS-FILGATAGIILIVLKLKG------- 213
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+K+ IP+G I++G + S
Sbjct: 214 --------IKDAIPFGPFIALGSIASLFAGD 236
>gi|206977561|ref|ZP_03238455.1| late competence protein comC [Bacillus cereus H3081.97]
gi|222095039|ref|YP_002529099.1| late competence protein comc [Bacillus cereus Q1]
gi|206744279|gb|EDZ55692.1| late competence protein comC [Bacillus cereus H3081.97]
gi|221239097|gb|ACM11807.1| late competence protein comC [Bacillus cereus Q1]
Length = 240
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 20/160 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L L+ +++D +IPNR+ LL + ++ +
Sbjct: 97 ELIIVLSLFALLLIISVTDYIYMLIPNRILAWFAC--LLILECAFIPLVTWIDSIVGSCV 154
Query: 68 VFIICFCFFAF--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+FI+ +C +GGGD+KLL+ G F+ ++ R
Sbjct: 155 IFILLYCMQKIYPEGLGGGDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKR- 213
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
M+ +IP+G IS+G + +Y
Sbjct: 214 ---------------MKMRTQIPFGPFISLGAICYMLVTY 238
>gi|121534458|ref|ZP_01666281.1| peptidase A24A domain protein [Thermosinus carboxydivorans Nor1]
gi|121306951|gb|EAX47870.1| peptidase A24A domain protein [Thermosinus carboxydivorans Nor1]
Length = 249
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 16/157 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
LI L+ A D +I ++V I + G+ + LG + +
Sbjct: 96 ELIKALIFISFLIVVAFIDYDHQLILDKVLIWLGGAGVFINLGLGFTGLTDMIAGSLLGG 155
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
++ + MGGGD+K +W GW + L+ + G V + R
Sbjct: 156 GLLLVIAIASRGGMGGGDIKFAACLGLWLGWKLTLLALFLSFLLGGVGGIVLLTLKRK-- 213
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
K+ IP+G +++G +
Sbjct: 214 --------------GRKDFIPFGPFLALGAFFAGLYG 236
>gi|162456976|ref|YP_001619343.1| prepilin peptidase [Sorangium cellulosum 'So ce 56']
gi|161167558|emb|CAN98863.1| Prepilin peptidase [Sorangium cellulosum 'So ce 56']
Length = 321
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79
DL IP+ ++I + TA L M + + VG + + F
Sbjct: 131 TFIDLEHMFIPDSITIGGAVLGVATASLRSMSFVDALVGAAVGFGIVWLPFVVIYPRIRG 190
Query: 80 ---IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
MG GD KLL WFGW + L A+ G I+++ +L +R
Sbjct: 191 GRVGMGLGDAKLLMLAGAWFGWGGALF-VLGAGAVQGSIIAIAMLILRGSIEEPEAVR 247
>gi|322434102|ref|YP_004216314.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9]
gi|321161829|gb|ADW67534.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9]
Length = 182
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 17/172 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ C +L DL S IPNR++ + L L + + L L GLI
Sbjct: 6 QTTYLTAALVCASIGSLHDLRSRRIPNRLTGPAILC-GLLLHLALGGWTQLGLSALAGLI 64
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
I FF MG GDVKL+T+ G L ++G ++ V + R
Sbjct: 65 AGGIFLVFFVAGGMGAGDVKLMTAVGCLAGTAY-IKEVLIATVLIGALMGVALALYRGRL 123
Query: 128 NHIPIFGMFVPKSFLMKN---------------KIPYGIAISMGGLISYPDS 164
+ + + + + ++PY + I+ G L+++ +
Sbjct: 124 RETMLNVITLVQHHGAEGLAAHPELNVRNVATLRLPYALPIAAGCLLTFFMT 175
>gi|134298911|ref|YP_001112407.1| peptidase A24A domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134051611|gb|ABO49582.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Desulfotomaculum reducens MI-1]
Length = 248
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 16/153 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L+ L+ + D+ +IP+ V +V L F +D+ L
Sbjct: 97 QALAMLVFFSVLMVTTVIDIHHQIIPDSVLLVGGLLGLPIIFFQSLDHLKWGLIGFFAAG 156
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ ++ + MGGGD+KL ++ G P ++ + G + + + T
Sbjct: 157 LLLLLIALLSKGGMGGGDIKLAAVMGLYLGLKPVAIALFLSFLLGGAVGILLLATGIK-- 214
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
K+ +P+G ++ G +IS
Sbjct: 215 --------------GRKDPVPFGPFLAAGAIIS 233
>gi|186474100|ref|YP_001861442.1| peptidase A24A prepilin type IV [Burkholderia phymatum STM815]
gi|184196432|gb|ACC74396.1| peptidase A24A prepilin type IV [Burkholderia phymatum STM815]
Length = 178
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 16/166 (9%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
+ AA+ DL + IPN + ++ LG L L ++L ++ L +
Sbjct: 12 VLALVAIAAIYDLHARRIPNWLVVIGLGVGLAVQAALHGMASGMSLWVVGALTGGAMLMP 71
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+ ++G GDVKL+ + + G +F + L A+ G V +L + +
Sbjct: 72 GYLLRMLGAGDVKLMAAVGCFCGGAGAFQAALAVCAVGGVWALVELLRHGQMRAGLQNMT 131
Query: 135 MFVPKSFLMKNK----------------IPYGIAISMGGLISYPDS 164
+ ++ +PYG+AI++G +++ S
Sbjct: 132 AALTDVWMPSGGTPHAGSTRTRRPTAGSLPYGVAIAVGTMLALFAS 177
>gi|257875285|ref|ZP_05654938.1| signal peptidase [Enterococcus casseliflavus EC20]
gi|257809451|gb|EEV38271.1| signal peptidase [Enterococcus casseliflavus EC20]
Length = 250
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 20/149 (13%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCFFAF 78
+ SD+F +IPN+V + + + + + G + +
Sbjct: 119 IISASDIFYQLIPNKVLAPFFAGGIGLRVIQPQNEFWWYWLVGFFAGFLPLYLLAELSKK 178
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
MGGGD+KL V+ G + + +L +
Sbjct: 179 -GMGGGDIKLFAVLGVYIGPVQVLTVLFVASCLAVIFYVIQMLRGK-------------- 223
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ I +G I++ + Y S F
Sbjct: 224 ---VKSRYIAFGPFIAIATGMVYLGSGWF 249
>gi|297583742|ref|YP_003699522.1| peptidase A24A domain-containing protein [Bacillus selenitireducens
MLS10]
gi|297142199|gb|ADH98956.1| peptidase A24A domain protein [Bacillus selenitireducens MLS10]
Length = 253
Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 17/169 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
+ V L+ LV +SDL + +IP++ + + LL + +D A
Sbjct: 99 MELVVALLFLSMLVIITVSDLSTMLIPDKVLLFFGIPILLLRMSVAPLDPWWTAFAGAGL 158
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++ + MGGGD+KL G + LS LF A++G + + + R
Sbjct: 159 GFGILLLLAVASRGGMGGGDIKLYLVIGFVLGPIETVLS-LFLAALVGLVYGLPRIVKRQ 217
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
N IP+G I++G +I+Y +GL
Sbjct: 218 TG---------------RGNPIPFGPFIALGAVIAYFMGGAILDWYVGL 251
>gi|294501410|ref|YP_003565110.1| late competence protein ComC [Bacillus megaterium QM B1551]
gi|294351347|gb|ADE71676.1| late competence protein ComC [Bacillus megaterium QM B1551]
Length = 263
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ + + V L L +SD+ ++PN+V + L FLL + ++ +L
Sbjct: 92 RLNMTLELIVILTFVSFLTIIVVSDIAYMIVPNKVLLFFLPIFLLERLFIPLNSWSDSLM 151
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F + +G GD+KL + G LS + I G + +L
Sbjct: 152 GGGIAFFLLFLIAFLSRGGLGEGDIKLYALIGIVLGVKLVLLSLFLAILIGGTVSIGALL 211
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ IP+ I +G + +Y
Sbjct: 212 MKKAKVGV----------------PIPFVPFIFIGTIAAYFHG 238
>gi|149915634|ref|ZP_01904160.1| peptidase A24A, prepilin type IV [Roseobacter sp. AzwK-3b]
gi|149810526|gb|EDM70369.1| peptidase A24A, prepilin type IV [Roseobacter sp. AzwK-3b]
Length = 166
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 5/161 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
++ + M + V+ +DL S IPN I + FL+ + + +
Sbjct: 3 LQITAMQAAWFLPFVLPICVWVIWTDLSSMRIPNASVIALTCVFLVVGLFV-LPLQDYPW 61
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ +IV +I A IMG GD K L + A + F+ F A L
Sbjct: 62 RLVNLVIVLLIGILLNAAGIMGAGDSKFLAAAAPFIDPGDVVPLFVIFSANLLAC----F 117
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+T R++ S+ + K P G A+ +I
Sbjct: 118 VTHRLVMKSTLRQLAPDWISWSREGKFPMGFALGSSLVIYL 158
>gi|221067358|ref|ZP_03543463.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1]
gi|220712381|gb|EED67749.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1]
Length = 196
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 19/154 (12%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
+SDL + IPNR++ + LL L L + ++ + + MG
Sbjct: 34 ISDLRTRRIPNRLTFGGIALALLYGLLAPHPHGGGFFWALGGMALGLVLMLPLYLLHAMG 93
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF- 141
GGDVKL+ + G ++ + +F I GG+ ++ + + +
Sbjct: 94 GGDVKLMAMVGSFIGPEATWQAVIFV-FITGGVAAIGYALWHRMAGKLLRNSAEAVQLLY 152
Query: 142 ----------------LMKNKIPYGIAISMGGLI 159
K+PYG++I++G L
Sbjct: 153 INVAAGIAPDARSSSAHSVGKLPYGVSIALGTLA 186
>gi|70732598|ref|YP_262361.1| type IV pilus prepilin peptidase PilD [Pseudomonas fluorescens
Pf-5]
gi|68346897|gb|AAY94503.1| type IV pilus prepilin peptidase PilD [Pseudomonas fluorescens
Pf-5]
Length = 290
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 21/170 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ + LI + L+ +L D ++P+ + + +L L+ F L + E ++G
Sbjct: 131 AAGLMLILSWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANSFGLLISLEDALWGTVIGY 190
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F MG GD KLL W GW L+ L + + ++ +
Sbjct: 191 LFLWSVFWLFKLLTGKEGMGHGDFKLLALFGAWGGWQILPLTLLLSSLLGAILGTILLRL 250
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
R IP+G +++ G I+ +
Sbjct: 251 RREK----------------TSTPIPFGPFLAIAGWIALLWGGQITDFYL 284
>gi|295096427|emb|CBK85517.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family
A24A [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 265
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 23/143 (16%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVFIICFCFFAF---- 78
+ D ++P+ ++ +L + L+ AF + + G + + + F
Sbjct: 132 MIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGR 191
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+G GD KLL + W GW + S A+ G + + +
Sbjct: 192 EGLGYGDFKLLAALGAWCGWQ-ALPSIELAAALSGIVGYFAVNNLNKNNLT--------- 241
Query: 139 KSFLMKNKIPYGIAISMGGLISY 161
I +G ++ G+ +
Sbjct: 242 --------ISFGPYLAFAGIGVF 256
>gi|242278464|ref|YP_002990593.1| peptidase A24A domain protein [Desulfovibrio salexigens DSM 2638]
gi|242121358|gb|ACS79054.1| peptidase A24A domain protein [Desulfovibrio salexigens DSM 2638]
Length = 260
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 21/170 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGL 66
V++ ++ A+ DL + ++P+ ++I + + A + + +E L +G
Sbjct: 105 QWLVYMFFGGLMIVASFIDLKTFILPDIITIPGSIAAIPCAAMLTPVGWEGALLGAGIGG 164
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+F + +G GDVK++ G L V +
Sbjct: 165 GLFWSLRLLYRGLKGVEGLGLGDVKIMFMIGALAGPQNLPLVITVSAFTGLIAGVVMTVV 224
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVAL 171
+ IP+G +++G +++ + + L
Sbjct: 225 DKDQEYGTM---------------IPFGPFLALGSMLTILYADPFWNWYL 259
>gi|313672273|ref|YP_004050384.1| prepilin peptidase [Calditerrivibrio nitroreducens DSM 19672]
gi|312939029|gb|ADR18221.1| Prepilin peptidase [Calditerrivibrio nitroreducens DSM 19672]
Length = 259
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 30/187 (16%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFS---------AMIPNRVSIVMLGSFLLTAFLL 51
+K + S LI F ++ A +DL++ +IP+ + + L+ +F
Sbjct: 88 IKYGLSLNSLALLIFSFFILTAGFTDLYTAFEKDQFECGVIPSVILYAGIILGLILSFFN 147
Query: 52 GMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
G L ++G I I + MG GD+ L+ + + G +
Sbjct: 148 GFGIVNSILGGVIGFISLFIPAIVYKILKGREGMGDGDMYLMAMSGTFLGVKAILPILIL 207
Query: 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ I V I ++ + IP+G I++G ++
Sbjct: 208 SSFVGAVIGIVIIKVLKDNSF-----------------PIPFGPFIALGSIVYLFYGEEL 250
Query: 168 KVALMGL 174
+GL
Sbjct: 251 INLYIGL 257
>gi|254412692|ref|ZP_05026465.1| Bacterial Peptidase A24 N-terminal domain family [Microcoleus
chthonoplastes PCC 7420]
gi|196180427|gb|EDX75418.1| Bacterial Peptidase A24 N-terminal domain family [Microcoleus
chthonoplastes PCC 7420]
Length = 276
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 31/187 (16%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT--------------- 47
S + + + L+ +L DL + +PN ++ L ++
Sbjct: 98 YSLSIETFGYWAFLSWLLALSLIDLDTMTLPNSLTQSGLVVGIVFQGAFAFFQTAQLSDI 157
Query: 48 AFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
+ L L + + I+ ++ F MGGGD KL W GW L+
Sbjct: 158 SAQLMTGISGAVLGIWLFDIITLVGSIVFGQTAMGGGDAKLAAMMGAWLGWKYLLLAGFL 217
Query: 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
G + +P+G +++G ++
Sbjct: 218 AC----------------AVGAFAGGGAMAMGWLNRRQPMPFGPFLALGAGLTVFWGEAI 261
Query: 168 KVALMGL 174
A + L
Sbjct: 262 LSAYLRL 268
>gi|220931445|ref|YP_002508353.1| Prepilin peptidase [Halothermothrix orenii H 168]
gi|219992755|gb|ACL69358.1| Prepilin peptidase [Halothermothrix orenii H 168]
Length = 246
Score = 61.0 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 16/149 (10%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D+ +IPN ++ + + L+++ +L +L ++ +F+ +G GD
Sbjct: 113 DIREKIIPNVITFPGMVTGLISSIILKHIGFWNSLLGILIPGIFLFIIALIFKGGLGMGD 172
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
VKL+ + G + ++ + + I++ K
Sbjct: 173 VKLVAMIGAFTGVRWALMALFTGAFLGAITGIILIVSG----------------VLDRKK 216
Query: 146 KIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+G IS+GGL+S Y + ++ L
Sbjct: 217 PVPFGPFISIGGLVSILWGYEIWIYIINL 245
>gi|220907984|ref|YP_002483295.1| peptidase A24A domain-containing protein [Cyanothece sp. PCC 7425]
gi|219864595|gb|ACL44934.1| peptidase A24A domain protein [Cyanothece sp. PCC 7425]
Length = 239
Score = 61.0 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 31/182 (17%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------------- 53
+ + + L+ +L DL + +P+ ++ + L+ G+
Sbjct: 69 QTPAYWLFFSWLLALSLIDLDTFTLPHALTSSGVIMGLVVQVWFGLVSADPFSTTLSLLL 128
Query: 54 -DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
L L + ++ I+ MGGGD KL+ W GW L+ AI
Sbjct: 129 QSILGAVLGLWLFDLIRILGLLALGQEAMGGGDSKLVAMIGAWLGWKLMLLAAFLGCAIG 188
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ I + IP+G +++GG I+ A +
Sbjct: 189 AFMGGAAIALG----------------LLSRRQPIPFGPFLALGGAIATLYGEPILKAYL 232
Query: 173 GL 174
Sbjct: 233 SW 234
>gi|320087887|emb|CBY97650.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 155
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R + +L LL L + G
Sbjct: 3 VALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAG 62
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L + W W L + G V +L
Sbjct: 63 YGGFALIYWGYRLHYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGRFGVALL 122
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 123 VRGKSALI---------------NPLPFGPWLAVAGFIT 146
>gi|115376290|ref|ZP_01463530.1| type IV prepilin peptidase [Stigmatella aurantiaca DW4/3-1]
gi|310823674|ref|YP_003956032.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Stigmatella aurantiaca DW4/3-1]
gi|115366715|gb|EAU65710.1| type IV prepilin peptidase [Stigmatella aurantiaca DW4/3-1]
gi|309396746|gb|ADO74205.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
[Stigmatella aurantiaca DW4/3-1]
Length = 337
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 5/127 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVF-- 69
L+ L+ DL ++P +++ + + A + G A+ VG +VF
Sbjct: 112 LVLITLLIPLTFIDLEHWILPFSLTVPGIVLGVGLAGVQGAEALRDAAVGAAVGFLVFRL 171
Query: 70 --IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + MGGGD L+ + W + + I
Sbjct: 172 MEYLGWTLLRKEAMGGGDKYLVAMLGGFLSWKSLLGILFLSSFQGAVVGILLIALTGRAG 231
Query: 128 NHIPIFG 134
G
Sbjct: 232 PRAEGQG 238
>gi|78045067|ref|YP_359490.1| type IV prepilin peptidase [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997182|gb|ABB16081.1| type IV prepilin peptidase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 249
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
DL + ++P++++ + + +L + + ++ + + MGGGD
Sbjct: 114 DLENFLLPDKLTYPLFLAGVLINLITRELSWKSLIFGVITGFGLLFLLALISRGGMGGGD 173
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
+KL + G+ + G + +LT + +
Sbjct: 174 IKLAAGLGAFLGFPLILETLFLAFFFGGLTGIILLLTKKK----------------ARGD 217
Query: 146 KIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+G + I+ + +
Sbjct: 218 MVPFGPFLIGAAFITVLWGEKIIKWYLKI 246
>gi|16762841|ref|NP_458458.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144328|ref|NP_807670.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56415361|ref|YP_152436.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|168245309|ref|ZP_02670241.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194450629|ref|YP_002047465.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197249369|ref|YP_002148361.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197364291|ref|YP_002143928.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198241870|ref|YP_002217404.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|213163865|ref|ZP_03349575.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213416460|ref|ZP_03349604.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213586956|ref|ZP_03368782.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213613030|ref|ZP_03370856.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213865562|ref|ZP_03387681.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|238913843|ref|ZP_04657680.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289824748|ref|ZP_06544213.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|291084565|ref|ZP_06539086.2| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|25513047|pir||AG1005 Type III leader peptidase [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16505147|emb|CAD08171.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139966|gb|AAO71530.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129618|gb|AAV79124.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|194408933|gb|ACF69152.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197095768|emb|CAR61338.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197213072|gb|ACH50469.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197936386|gb|ACH73719.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|205335972|gb|EDZ22736.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|326625185|gb|EGE31530.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 155
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R + +L LL L + G
Sbjct: 3 VALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAG 62
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L + W W L + G V +L
Sbjct: 63 YGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGRFGVALL 122
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 123 VRGKSALI---------------NPLPFGPWLAVAGFIT 146
>gi|258406527|ref|YP_003199269.1| Prepilin peptidase [Desulfohalobium retbaense DSM 5692]
gi|257798754|gb|ACV69691.1| Prepilin peptidase [Desulfohalobium retbaense DSM 5692]
Length = 257
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 20/161 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIV 68
V++ L+ A+ DL S ++P+R+++ L+ A LG+ + A+ + G
Sbjct: 104 LVYMGFGGLLIVASFIDLDSFILPDRLTLPGGLLALIAAPTLLGLSWSSAAIGAVAGAGT 163
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F I + +G GD+KL+ GW L G+ V+++ R
Sbjct: 164 FWILQQGYKLLRGVEGLGTGDIKLMFLLGGLLGWQSLPLVVFLGALSGLGVSVVYLVRDR 223
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
S M+ IP+G +S+GG+++
Sbjct: 224 ---------------SQGMQTAIPFGPFLSLGGMLTILFGP 249
>gi|229166238|ref|ZP_04293997.1| Peptidase A24A domain protein [Bacillus cereus AH621]
gi|228617183|gb|EEK74249.1| Peptidase A24A domain protein [Bacillus cereus AH621]
Length = 249
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++DL +IPNR+ I +L + + + +L + + + C + +GG
Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWIDSLAGSGTIFILLYCMQKIYPDGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKLL+ G F++ + I R +
Sbjct: 182 GDVKLLSLLGCIVGVKGVFITLFLASCFSLCFFGIGIALKR----------------INI 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ IP+G IS+G + +Y
Sbjct: 226 RTPIPFGPFISLGAICYVLVTY 247
>gi|325294958|ref|YP_004281472.1| Prepilin peptidase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065406|gb|ADY73413.1| Prepilin peptidase [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 251
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 60/163 (36%), Gaps = 21/163 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
V S FL+ + LV ++ DL + ++P ++ + + +L + + + + L G
Sbjct: 95 VTSFYFLLLTYVLVVVSMIDLKTMLVPVKLCYFAMIAGILFSIFVPSISLKDSILGASFG 154
Query: 66 LIVFIIC----FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + MG GD ++ + GW L+ ++G + + +
Sbjct: 155 AGIILFIIETYYILKGKEGMGYGDANVMAVIGAFLGWEKVLLTIFLAS-LIGAVWGIIFM 213
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+R + + +P+ +S+ ++
Sbjct: 214 ILRGKNSQL---------------ALPFVPFLSLATYVTIIFG 241
>gi|262277319|ref|ZP_06055112.1| bacterial Peptidase A24 N-terminal domain family protein [alpha
proteobacterium HIMB114]
gi|262224422|gb|EEY74881.1| bacterial Peptidase A24 N-terminal domain family protein [alpha
proteobacterium HIMB114]
Length = 252
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 25/180 (13%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE---- 56
++ + + F I LV +DL +I + ++ + + + + +
Sbjct: 90 LQFGLTLNALFFSILLSSLVIIFFTDLNEYLILDIFTLPLSVIGFVLSAIKLNPFSVLIA 149
Query: 57 ----LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
+ + V ++ + + MG GD KL+ W G F
Sbjct: 150 DSFAGLIIGFSVFYLIRWFFYKYKKIEGMGLGDAKLMMMIGAWLGLKSILFVMFFSSVTA 209
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
I + + + IPYG I++ + F L+
Sbjct: 210 LIIAIPLTIIKK-----------------DRRYPIPYGCFITLAAFLYILIGDTFYKFLL 252
>gi|163742221|ref|ZP_02149609.1| hypothetical protein RG210_03383 [Phaeobacter gallaeciensis 2.10]
gi|161384551|gb|EDQ08932.1| hypothetical protein RG210_03383 [Phaeobacter gallaeciensis 2.10]
Length = 168
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 7/161 (4%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M S V AL+DL IPN ++ F++ L M +
Sbjct: 1 MLISAHVALWFLPFVVPLCCVVALNDLRHMRIPNWTVDLLGAIFVIVGPFL-MSWTDYGW 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
LL I + F ++ ++G GD K + A F V I +L
Sbjct: 60 QLLHLPIGIGLGFLCYSAGMVGAGDAKFAGAAA----PFVVFGDLSVVVMIFSAMLLAGF 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
LT R+ KS+ + +K P G + +GG + +
Sbjct: 116 LTHRIAKYTPLRRLAPHWKSWDVGSKFPMG--LCLGGTLVF 154
>gi|217967414|ref|YP_002352920.1| peptidase A24A domain protein [Dictyoglomus turgidum DSM 6724]
gi|217336513|gb|ACK42306.1| peptidase A24A domain protein [Dictyoglomus turgidum DSM 6724]
Length = 254
Score = 60.6 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 59/169 (34%), Gaps = 19/169 (11%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ LI L+ DL +IP+ ++I G L+ + G + I L+ G I+
Sbjct: 101 TLKLLILFSMLLPVFFIDLEHMLIPDVITIPGTGVGLIISLFEGRLAQGILGSLIFGGIL 160
Query: 69 FIIC---FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+I MG GD+KL + G S LS I G + IL
Sbjct: 161 LLIYVIALLILKEEGMGQGDIKLGFMLGSFLGIKLSLLSLFLSYFIGGLFSLLIILIKGK 220
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+K IP+G + +G LIS + L
Sbjct: 221 ----------------DLKTAIPFGPFLIIGALISLFFGKTLINLYLSL 253
>gi|329928977|ref|ZP_08282787.1| peptidase, A24 family [Paenibacillus sp. HGF5]
gi|328937229|gb|EGG33656.1| peptidase, A24 family [Paenibacillus sp. HGF5]
Length = 170
Score = 60.6 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ F I L+ A ++DL S IPN +++ + S + L +E + L
Sbjct: 2 AVAFGICAVYLIAAFITDLRSMKIPNALTVSAMLSGPVYHGALD-GWEGLLFSLKGLGAG 60
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F+I + +G GDVKL W G + ++ V G I + +L R
Sbjct: 61 FLILLIMYFIGAVGAGDVKLFGGIGAWTGLWFTLQGIMYSVLFAGAIGLLILLWRRETMK 120
Query: 129 HIPIFGMFVPKSFLMKNKIP 148
I + F+MK+ +P
Sbjct: 121 RIRHVVGSITGVFVMKSWLP 140
>gi|261342792|ref|ZP_05970650.1| prepilin peptidase [Enterobacter cancerogenus ATCC 35316]
gi|288314970|gb|EFC53908.1| prepilin peptidase [Enterobacter cancerogenus ATCC 35316]
Length = 157
Score = 60.6 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 19/140 (13%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFCFFAF----NI 80
D+ S ++P+R +L + LL L + G + F + +
Sbjct: 22 DVRSGLLPDRYVCPLLWTGLLFQLCLHPQFLPSAVAGAMAGYLGFAAIYWGYRLVCHREG 81
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
+G GDVK L + W GW + + ++ M ++ I ++ P+
Sbjct: 82 LGYGDVKYLAALGAWHGW--------------CILPLLALVAALMALLYLLILSLWHPEK 127
Query: 141 FLMKNKIPYGIAISMGGLIS 160
+KN +P+G ++ GL
Sbjct: 128 EPLKNPLPFGPFLAAAGLCV 147
>gi|261409005|ref|YP_003245246.1| peptidase A24A prepilin type IV [Paenibacillus sp. Y412MC10]
gi|261285468|gb|ACX67439.1| peptidase A24A prepilin type IV [Paenibacillus sp. Y412MC10]
Length = 170
Score = 60.6 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ F I L+ A ++DL S IPN +++ + S + L +E + L
Sbjct: 2 AVAFGICAVYLIAAFITDLRSMKIPNALTVSAMLSGPVYHGALD-GWEGLLFSLKGLGAG 60
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F+I + +G GDVKL W G + ++ V G I + +L R
Sbjct: 61 FLILLIMYFIGAVGAGDVKLFGGIGAWTGLWFTLQGIMYSVLFAGAIGLLILLWRRETMK 120
Query: 129 HIPIFGMFVPKSFLMKNKIP 148
+ + F+MK+ +P
Sbjct: 121 RVRHVVESIAGVFVMKSWLP 140
>gi|261416413|ref|YP_003250096.1| peptidase A24A domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372869|gb|ACX75614.1| peptidase A24A domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327656|gb|ADL26857.1| type 4 prepilin-like protein leader peptide processing enzyme
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 283
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 14/171 (8%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGL 66
+A+F + A+ D +IP+ +S+ + + LL + G+ + +V
Sbjct: 118 AAAMFWLLLGAYPVCAV-DCKYKLIPDSISVGGIVAGLLISLVPGGVTPLQSLIGAVVAG 176
Query: 67 IVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + MG GDVKLL T + + L + ++ + +
Sbjct: 177 GGLYLLGWIATKVLKKDAMGFGDVKLLAGYGALMDVTGAVETLLVAALLGIVVMVPYGML 236
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ +IP+G +++ + Y A
Sbjct: 237 --------AAKKAAKNKNSEEAGQIPFGPFLAIAAPVIYLWGSALLDAYFK 279
>gi|327395508|dbj|BAK12930.1| type 4 prepilin-like proteins leader peptide processing enzyme TapD
[Pantoea ananatis AJ13355]
Length = 211
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 20/157 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVG 65
+ +A L+ L+ A+ D ++P+ ++ +L L F + + G
Sbjct: 59 LTAAFILVASCLLLLLAVIDQRHFLLPDVLTGALLWLGLSRFFFAAPLSVTSAVGGAVAG 118
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + +G GD+KL + +W GW L +V +
Sbjct: 119 YGSLWLLAWLYRQIKHQEGLGNGDIKLFAALGIWCGWQALPWIALIASVSALLAFAVRAI 178
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ M + +P+G ++ G
Sbjct: 179 IHKR---------------LYMNSPLPFGPFLAAAGW 200
>gi|229010694|ref|ZP_04167892.1| Peptidase A24A domain protein [Bacillus mycoides DSM 2048]
gi|228750588|gb|EEM00416.1| Peptidase A24A domain protein [Bacillus mycoides DSM 2048]
Length = 249
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++DL +IPNR+ I +L + + + +L + + + C + +GG
Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWIDSLAGSGTIFILLYCMQKIYPDGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKLL+ G F++ + I R +
Sbjct: 182 GDVKLLSLLGCIVGVKGVFITLFLASCFSLCFFGISIALKR----------------INI 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ IP+G IS+G + +Y
Sbjct: 226 RTPIPFGPFISLGAICYVLVTY 247
>gi|258515688|ref|YP_003191910.1| peptidase A24A prepilin type IV [Desulfotomaculum acetoxidans DSM
771]
gi|257779393|gb|ACV63287.1| peptidase A24A prepilin type IV [Desulfotomaculum acetoxidans DSM
771]
Length = 177
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 16/167 (9%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
I L + +DL +I N VS ++ + L+ G Y L ++ G ++F++ +
Sbjct: 14 IVLTALAIGSYTDLKYRIIKNNVSFGLIVAGLVYNIFFGYGYIFSLLGIVSGFVLFLLPY 73
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT------ 127
MG GDVKL+ GW + + + I+
Sbjct: 74 IIT---GMGAGDVKLIMGVGAVLGWQYAIYIGMLSSILSALHSIAVNAKKGKISELFKST 130
Query: 128 -------NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ + + +PY ++I + ++ +L+
Sbjct: 131 FKYQLNYAIVKVQIKDYSRETTEGTTLPYAVSILISTILVLLGGWLY 177
>gi|167755496|ref|ZP_02427623.1| hypothetical protein CLORAM_01010 [Clostridium ramosum DSM 1402]
gi|167704435|gb|EDS19014.1| hypothetical protein CLORAM_01010 [Clostridium ramosum DSM 1402]
Length = 244
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 16/165 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ V + L+ + D + IPN + I ++ ++ A L + + +
Sbjct: 92 TLVSFVLAMILLTITMIDFDTMTIPNGLVIALVAPVIVCAVLEPQISISSRVIGMASVSG 151
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F++ + GGGD+KL+ GW + L+ + GGI + +++ +
Sbjct: 152 FMLLMTLAIPDCFGGGDMKLMFVCGFMLGWINTLLAGFI-GLLAGGIYASYLMVTKKSK- 209
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ + +G + +G I+ +
Sbjct: 210 --------------EQSHMAFGPYLCLGIFIALLYGNEIIRVYLS 240
>gi|300863705|ref|ZP_07108637.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Oscillatoria sp. PCC 6506]
gi|300338273|emb|CBN53783.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Oscillatoria sp. PCC 6506]
Length = 276
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 32/184 (17%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------------- 53
+ + + L+ +L DL + +PN ++ L L+ L G+
Sbjct: 102 LETLGYWTFFSWLLALSLIDLDTMTLPNALTRSGLVLGLVFQALNGLLPNFNLAVGIDRL 161
Query: 54 ---DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+ L + I+ + F MG GD KL W GW L+
Sbjct: 162 VLTGVTGAVVGLWLFDIIALAGSLVFGQTAMGAGDTKLAAMMGAWLGWKYLLLAGFLACT 221
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ + I + ++P+G +++G +++ +
Sbjct: 222 LGAFVGGGAIALG----------------WLGRRQQMPFGPFLALGAVLTALWGEMIISI 265
Query: 171 LMGL 174
+ L
Sbjct: 266 YLQL 269
>gi|182412325|ref|YP_001817391.1| peptidase A24A domain-containing protein [Opitutus terrae PB90-1]
gi|177839539|gb|ACB73791.1| peptidase A24A domain protein [Opitutus terrae PB90-1]
Length = 304
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 59/178 (33%), Gaps = 24/178 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--------------- 53
+ ++ L+ A DL +IP+ S+ + ++ +F++
Sbjct: 110 AVCVMLFLSALIAATFIDLDHLIIPDVFSLGLGVLGVILSFVVPSLHGHEGNLFIIDSMR 169
Query: 54 ----DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
+ + + + L + ++ MG GDVK + + GW + +
Sbjct: 170 AGVAALQGLLIGSGLVLWIALVAEVLLKKEAMGFGDVKFAGAIGAFCGWQGAVFALFGGA 229
Query: 110 AILGGILSVFILTVRMITNHIPIFGMF-----VPKSFLMKNKIPYGIAISMGGLISYP 162
+ V ++ ++ P+ P +P+G +++ G +
Sbjct: 230 MVGTVWFVVALVWQKLAGRPSPVAPPTETPEGEPAPLGFGVHVPFGPMLAIAGALYLL 287
>gi|84387248|ref|ZP_00990269.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01]
gi|84377895|gb|EAP94757.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01]
Length = 179
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 59/135 (43%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L+ ++ D+ IPN++ I+ L + L+ F +++ + + ++ F
Sbjct: 10 VFWALLIAVSVYDVEKHRIPNKILILFLFVYFLSMFNRNYSFDVFLMSFVGFVVFFCFGL 69
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+ M GDVKLL ++ GW + F + G I + ++L +N++ I
Sbjct: 70 LLYFLRAMSAGDVKLLGIVGMYLGWGQLLGASYFILLSAGVIGTFYLLYNFSNSNNLSIR 129
Query: 134 GMFVPKSFLMKNKIP 148
G F K ++ P
Sbjct: 130 GYFENKLIVLGGVAP 144
>gi|295096963|emb|CBK86053.1| type 4 prepilin peptidase 2. Aspartic peptidase. MEROPS family A24A
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 173
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 19/160 (11%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLV 64
++ LI +D+ + ++P++ +L + LL L D+ + +
Sbjct: 18 LLSLPFLLIYFALSALLVRTDIRTGLLPDKFLCPLLWTGLLYQLCLHPDFLPSAVVGAMA 77
Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G F I + + MG GD+K L + W GW + +
Sbjct: 78 GYAGFAIIYWGYRLICRREGMGYGDIKYLAALGAWHGWCVLPIL--------------AL 123
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ M ++ F +F P +KN +P+G ++ GL
Sbjct: 124 VAALMALLYLVAFSLFTPDKQALKNPLPFGPFLAAAGLCV 163
>gi|241662167|ref|YP_002980527.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
gi|240864194|gb|ACS61855.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
Length = 179
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 17/175 (9%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ S L ++ AA D+ + IPN + + L S L+ +
Sbjct: 1 MTTSTHLSLANLALILLVLTAAAYDVRTRRIPNWLVGMGLVSALVAQGMAIGVGAGCLAW 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L + +CF FF MG GDVKL+ + + G +F L + GG+L++ ++
Sbjct: 61 LGGAAVGIGLCFGFFVLGGMGAGDVKLMGAIGAFMGPFGAFHVALV-SFLAGGVLALVMV 119
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLIS 160
+R + S +K +PY +A + G L+
Sbjct: 120 LLRREARRSAAGVSALLLSIPFGSKTVHAEGQGPKHGGTIQLPYAVAFAAGTLLV 174
>gi|149181788|ref|ZP_01860279.1| leader peptide processing enzyme [Bacillus sp. SG-1]
gi|148850529|gb|EDL64688.1| leader peptide processing enzyme [Bacillus sp. SG-1]
Length = 204
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 16/156 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
V L + +SD+ +IP++V + G FLL L+ + +L
Sbjct: 50 ELLVALTLVSLFMIILVSDIKYMIIPDKVLLFFSGLFLLERILIPLGSRWDSLAGAALGF 109
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
++ + MGGGD+KL G P LSF I + +
Sbjct: 110 GLLLLIAVISKGGMGGGDIKLYALIGFVLGVKPMLLSFFLATLFGAVIGIIGLAAG---- 165
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
F K IP+G I++G LISY
Sbjct: 166 ------------FFERKKPIPFGPFIAVGTLISYFY 189
>gi|295706758|ref|YP_003599833.1| late competence protein ComC [Bacillus megaterium DSM 319]
gi|294804417|gb|ADF41483.1| late competence protein ComC [Bacillus megaterium DSM 319]
Length = 251
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 16/163 (9%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ + + V L L +SD+ ++PN+V + L FLL + + +L
Sbjct: 92 RLNMTLELIVILTFVSFLTIIVVSDIAYMIVPNKVLLFFLPIFLLERLFIPLTSWSDSLM 151
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ F + +G GD+KL + G LS + I G + +L
Sbjct: 152 GGGIAFFLLFLVAFLSRGGLGEGDIKLYGLIGIMLGVKLVLLSLFLAILIGGTVSIGALL 211
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ IP+ I +G + +Y
Sbjct: 212 MKKAKV----------------GVPIPFVPFIFIGTIAAYFHG 238
>gi|317471421|ref|ZP_07930773.1| peptidase A24 domain-containing protein [Anaerostipes sp.
3_2_56FAA]
gi|316901036|gb|EFV22998.1| peptidase A24 domain-containing protein [Anaerostipes sp.
3_2_56FAA]
Length = 258
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ + LI L D+ + IPN + + ++ FL + +
Sbjct: 104 LLKTVFLLITGALLTAVTFVDIDTMEIPNGFVLALACLGAVSLFLFPEVSLPMRVIGCFA 163
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ V ++ GGGD+KL+ + + G + + FF + GG+ +++L +
Sbjct: 164 VSVPMLLLTVLIPGAFGGGDIKLMAAAGILLGAKLT-GTAFFFSVLAGGVYGIYLLAGKK 222
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K+ +G + +G + +GL
Sbjct: 223 KGG---------------KDHFAFGPFLCLGIWAAICWGNEIIGWYLGL 256
>gi|16131214|ref|NP_417794.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
str. K-12 substr. MG1655]
gi|89110675|ref|AP_004455.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli str. K-12 substr. W3110]
gi|170082854|ref|YP_001732174.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli str. K-12 substr. DH10B]
gi|238902426|ref|YP_002928222.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
BW2952]
gi|547849|sp|P25960|LEP4_ECOLI RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|451905|gb|AAC36928.1| leader peptidase [Escherichia coli]
gi|1789732|gb|AAC76360.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
str. K-12 substr. MG1655]
gi|85676706|dbj|BAE77956.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli str. K12 substr. W3110]
gi|169890689|gb|ACB04396.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli str. K-12 substr. DH10B]
gi|238860083|gb|ACR62081.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
BW2952]
gi|260447646|gb|ACX38068.1| peptidase A24A prepilin type IV [Escherichia coli DH1]
gi|315137910|dbj|BAJ45069.1| bifunctional prepilin leader peptidase/methylase [Escherichia coli
DH1]
Length = 225
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 22/167 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
R I +G +++G +I+
Sbjct: 195 LQRRTI-----------------TTIAFGPWLALGSMINLGYLAWIS 224
>gi|167759924|ref|ZP_02432051.1| hypothetical protein CLOSCI_02288 [Clostridium scindens ATCC 35704]
gi|167662543|gb|EDS06673.1| hypothetical protein CLOSCI_02288 [Clostridium scindens ATCC 35704]
Length = 257
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L A D+ + I + I M+ ++ F + L L + +
Sbjct: 104 TALTVFAFFCILTVVAFLDIETMEIEDGCQIAMVILAAISIFTMPETSLLARLAGALCVS 163
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ ++ GGGD+KL+ + ++ GW + +S + GGI ++L +
Sbjct: 164 LPMLVLSIVIPGAFGGGDIKLMAACGLFLGWKITLVSAAL-AILFGGIYGCYLLAAQKA- 221
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
K P+G + +G IS + L
Sbjct: 222 --------------DRKAHFPFGPFLCIGMAISLLYGIRLIDWYLSLM 255
>gi|205354930|ref|YP_002228731.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205274711|emb|CAR39767.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
Length = 155
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R + +L LL L + G
Sbjct: 3 VALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAG 62
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L S W W L + G V +L
Sbjct: 63 YGGFALIYWGYRLRYQKEGLGYGDVKYLASLGAWHCWETLPLLVFLAAMLACGGFGVALL 122
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 123 VRGKSALI---------------NPLPFGPWLAVAGFIT 146
>gi|16766731|ref|NP_462346.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|161616470|ref|YP_001590435.1| hypothetical protein SPAB_04285 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167554347|ref|ZP_02348088.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|168260847|ref|ZP_02682820.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168467998|ref|ZP_02701835.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|194446607|ref|YP_002042692.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|197262639|ref|ZP_03162713.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|200388397|ref|ZP_03215009.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|207858684|ref|YP_002245335.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224585237|ref|YP_002639036.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|7674072|sp|O68927|HOPD_SALTY RecName: Full=Leader peptidase hopD
gi|3065819|gb|AAC14284.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|16421999|gb|AAL22305.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|161365834|gb|ABX69602.1| hypothetical protein SPAB_04285 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405270|gb|ACF65492.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|195628906|gb|EDX48316.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197240894|gb|EDY23514.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|199605495|gb|EDZ04040.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|205321446|gb|EDZ09285.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205350301|gb|EDZ36932.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206710487|emb|CAR34845.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224469765|gb|ACN47595.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261248598|emb|CBG26436.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|301159985|emb|CBW19504.1| Type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914465|dbj|BAJ38439.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321226489|gb|EFX51539.1| Leader peptidase Prepilin peptidase / N-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|332990294|gb|AEF09277.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 155
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R + +L LL L + G
Sbjct: 3 VALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAG 62
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L + W W L + G V +L
Sbjct: 63 YGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALL 122
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 123 VRGKSALI---------------NPLPFGPWLAVAGFIT 146
>gi|229160357|ref|ZP_04288355.1| Peptidase A24A domain protein [Bacillus cereus R309803]
gi|228623081|gb|EEK79909.1| Peptidase A24A domain protein [Bacillus cereus R309803]
Length = 249
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 20/137 (14%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
++DL +IPNR+ I FL+T + + ++ I+FI+ +C +
Sbjct: 122 VTDLVYMLIPNRILIWFA--FLITLECIFVPLVTWIDSIVGSGIIFILLYCVRRIYPEGL 179
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
GGGD+KLL+ G F+ + I R
Sbjct: 180 GGGDIKLLSLLGFIVGVKGIFIILFLASCFSLCFFGIGIALKR----------------I 223
Query: 142 LMKNKIPYGIAISMGGL 158
+ IP+G IS+G +
Sbjct: 224 EARKPIPFGPFISLGAI 240
>gi|238020908|ref|ZP_04601334.1| hypothetical protein GCWU000324_00805 [Kingella oralis ATCC 51147]
gi|237867888|gb|EEP68894.1| hypothetical protein GCWU000324_00805 [Kingella oralis ATCC 51147]
Length = 178
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 25/161 (15%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ D + ++P+ +++ ++ LL G E + +VG
Sbjct: 20 LETIGACVFTAYVIAMTFIDADTQLLPDELTLPLIWFGLLFNLKTGFVPLEQAVIGAMVG 79
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F MG GD KLL + W G ++ L + V
Sbjct: 80 YMSLWTLYWAFKLLTGKEGMGYGDFKLLAAIGAWLGVAVIPITLLVASFVGIAAFLV--- 136
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
K + +G +++ G +
Sbjct: 137 -----------------KRIARNTPMAFGPCLAIAGWFVFL 160
>gi|113866747|ref|YP_725236.1| flp pilus assembly leader peptidase CpaA [Ralstonia eutropha H16]
gi|113525523|emb|CAJ91868.1| flp pilus assembly leader peptidase CpaA [Ralstonia eutropha H16]
Length = 177
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 12/161 (7%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
++ AA DL IPN ++ + L + L + ++ F
Sbjct: 16 IGIVLTAAAIDLDRRRIPNWLTFGAWIAALPLMATIHGPAAGSLAWLYGWTVGLVLFLPF 75
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI----- 130
+ M GDVKL+ + W G + + L I G V +L + +
Sbjct: 76 YLMRGMAAGDVKLMAAVGAWLGGSMALKIALATCVIGGAWALVQVLATGQGRSTLARVGH 135
Query: 131 -------PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
P P++ +PYG+AI+ G L
Sbjct: 136 MLIAALVPGSRPVQPQAEASAGSLPYGVAIAAGTLTMLFAG 176
>gi|323702111|ref|ZP_08113779.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM
574]
gi|323532993|gb|EGB22864.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM
574]
Length = 167
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 13/161 (8%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + +DL I N V + L+ G + L L+ +
Sbjct: 5 IAIGAIVTICLYTDLRYRKIFNLVLLPAFLLALVFNLSTG-GIGGLLFSLTGALLGLSLL 63
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI------------ 120
F MG GDVKLL W G + FL + G I + +
Sbjct: 64 LIPFMLGGMGAGDVKLLAVIGAWQGPQFVWFCFLCTAIVGGIIATFQLVRTGKLRPTFKF 123
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ ++ + + + PYG+AI+ G L +Y
Sbjct: 124 ILFTLVPGSPKVNAFGTLATAKVGEAFPYGVAIAAGTLATY 164
>gi|300088227|ref|YP_003758749.1| prepilin peptidase [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527960|gb|ADJ26428.1| Prepilin peptidase [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 256
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 22/167 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-----MDYELIALHLLVGLI 67
L +V + D+ +I N + + + L+ + G + + G
Sbjct: 104 LFYAALMVVIFVIDMEHQVILNNILLPAIIIALVVSLFSGQIETVPSVLNAIIGAVAGFG 163
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+F++ + + MG GDVKL GW + + I G++++ +L R
Sbjct: 164 IFLVVYIV-SRGGMGEGDVKLGALAGAITGWPNIMAAVIL-SWIASGLVAIALLAFRRKG 221
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I +G +++ LI++ +GL
Sbjct: 222 ---------------RREAIAFGPFLALSTLITFLWGSQLIDWYLGL 253
>gi|115379232|ref|ZP_01466348.1| peptidase, A24 (type IV prepilin peptidase) family [Stigmatella
aurantiaca DW4/3-1]
gi|310822228|ref|YP_003954586.1| type IV leader peptidase family protein [Stigmatella aurantiaca
DW4/3-1]
gi|115363764|gb|EAU62883.1| peptidase, A24 (type IV prepilin peptidase) family [Stigmatella
aurantiaca DW4/3-1]
gi|309395300|gb|ADO72759.1| Type IV leader peptidase family protein [Stigmatella aurantiaca
DW4/3-1]
Length = 178
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 12/165 (7%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL---GMDYELIALHLLV 64
+A++ + LV + ++D+ I + V+ ++ L G + +
Sbjct: 5 QTALWTVLGAALVISVVTDVLHHRILDIVTYPLMALALGVRLAFEGVGDLETGLVSGGVS 64
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI---- 120
G+ + + MG GDVKL+ G+ + F + V +
Sbjct: 65 GVGLAALLLPGALRGRMGWGDVKLMGGVGAVLGFPAVMAAAAFISLVGAFQAVVTLIWKG 124
Query: 121 -----LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
L + M K+ + IPYG+AI++G +
Sbjct: 125 EVWDTLASAGRRWAVRARLMRTEKALAPQRHIPYGVAIALGTFWA 169
>gi|20807715|ref|NP_622886.1| Signal peptidase, cleaves prepilin-like proteins
[Thermoanaerobacter tengcongensis MB4]
gi|20516267|gb|AAM24490.1| Signal peptidase, cleaves prepilin-like proteins
[Thermoanaerobacter tengcongensis MB4]
Length = 252
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 16/168 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V + ++ L+ A+ DL +IPN + I L+ L+ L + +
Sbjct: 98 VKAFSYMFLSSVLISASFIDLEHKIIPNSIIIAGFIGALIFRLLMYSYGFLDYILGFLLG 157
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ + MGGGDVKL+ + GW L+ L ++
Sbjct: 158 GGILLLISLLSGGEMGGGDVKLMALIGFFIGWKLVLLNLLLG----------------VV 201
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + + K K+ IP+ +S+G LIS Y + L
Sbjct: 202 LGALAGVLLVLFKIKSRKDYIPFAPYLSLGWLISILYGYEILNYYLKL 249
>gi|225872752|ref|YP_002754209.1| type IV prepilin leader peptidase family protein [Acidobacterium
capsulatum ATCC 51196]
gi|225791712|gb|ACO31802.1| type IV prepilin leader peptidase family protein [Acidobacterium
capsulatum ATCC 51196]
Length = 191
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
+ D + IPN+++ L + LL F + + + L L+ F++ FF MG
Sbjct: 34 VHDARTRRIPNKLTGPALLAGLLLHF-AFDGWRGMGMAALAALLAFVVFLVFFLAGGMGA 92
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKL+T+ A G + L AI GG++++ + R +
Sbjct: 93 GDVKLMTAVACVAG-NHFVIELLVTTAIAGGVMALGLALARGRFKQTLGNVAMLMSHHRH 151
Query: 144 KN---------------KIPYGIAISMGGLISYPDSYL 166
++PYG+AI+ G + + +Y+
Sbjct: 152 AGLQPHPELNVRNQQSLRLPYGLAIAAGCIFTLASTYV 189
>gi|225414586|ref|ZP_03761775.1| hypothetical protein CLOSTASPAR_05809 [Clostridium asparagiforme
DSM 15981]
gi|225041885|gb|EEG52131.1| hypothetical protein CLOSTASPAR_05809 [Clostridium asparagiforme
DSM 15981]
Length = 269
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 23/175 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ +L+ L+ AL+DL S IP+R + + + A + + L+G I
Sbjct: 106 AAPYYLVFSLILLGVALTDLESYEIPDRFHVAAILWWCAGALITEQPLGSYIIKGLLGGI 165
Query: 68 VFIICFC--------FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ +GGGDVKL T ++ G + L+ + + + ++
Sbjct: 166 LIAGGMLAVSLVFDRLLGRESLGGGDVKLFFVTGLYLGPAVNLLNVIISCLLALILAALL 225
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ R + IP+G AI+ G + +GL
Sbjct: 226 PDSGRKPGDPA---------------AIPFGPAIAAGTWLCLLGGGPLVSWYLGL 265
>gi|254483259|ref|ZP_05096491.1| peptidase, A24 (type IV prepilin peptidase) family [marine gamma
proteobacterium HTCC2148]
gi|214036482|gb|EEB77157.1| peptidase, A24 (type IV prepilin peptidase) family [marine gamma
proteobacterium HTCC2148]
Length = 178
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 13/157 (8%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
A + D IPN ++ L L A L + + HL+ I F F +
Sbjct: 20 ATVMDFTRHRIPNYLTYPALVLGLCLAA-LSWGWTGLGNHLIGTFAAGIPLFLIFLSGSL 78
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM-----------ITNHI 130
GGGDVKL+ + G+ + + L + + G ++ ++ +
Sbjct: 79 GGGDVKLMAAVGAIVGFPNALNALLASIMVGGLCAALILIWQGRLWGLVQYACSTLGYRA 138
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMG-GLISYPDSYL 166
I ++ P+G+AI++G LI P + +
Sbjct: 139 GILSQAPQPPPAHRDSFPFGVAIAIGSCLIVVPPTLM 175
>gi|307265190|ref|ZP_07546749.1| peptidase A24A domain protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|306919812|gb|EFN50027.1| peptidase A24A domain protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 252
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 16/165 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ L+ + D+ ++PN++ I ++ L+ L + L+
Sbjct: 100 AFSYMFLASILISISFIDMEHKIVPNKIIIAGFVGAIIFRLLMYNYGFLDYVLGLILGGG 159
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ + MGGGD+KL+ + GW + L LF I+G + ++ +++
Sbjct: 160 ILLLISLISGGEMGGGDIKLMALIGFFIGWKLTIL-VLFLSVIIGALGGAILVALKIKG- 217
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ IP+ IS+ IS Y +
Sbjct: 218 --------------RKDYIPFAPHISIAWFISILYGYEILNYYIK 248
>gi|148974888|ref|ZP_01811868.1| hypothetical protein VSWAT3_25224 [Vibrionales bacterium SWAT-3]
gi|145965397|gb|EDK30646.1| hypothetical protein VSWAT3_25224 [Vibrionales bacterium SWAT-3]
Length = 152
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 16/159 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + +S + + D IPN ++ + L L+ A G + +
Sbjct: 1 MNIEIINYSFLIALNLSIFSCVCFFDWKHRKIPNNLNKIALVVNLVVALSNGYLASSLPI 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ + F+I + ++G GDVKLLT+ + + + + GG++ +
Sbjct: 61 SI----VCFVIGVLLWYLKVIGAGDVKLLTALVIGIQPDLVIATLISIGFMGGGLVLIMY 116
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ ++ + K IPYGI I++ I
Sbjct: 117 IIGKIKRFNSY------------KKGIPYGIPIALSCFI 143
>gi|36958869|gb|AAQ87294.1| CpaA [Sinorhizobium fredii NGR234]
Length = 194
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 71/162 (43%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
FL+ + +A + D+ + I NR+ +L +F + A L G+D +I +LV V
Sbjct: 33 LAFLLFAGTMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSSILVASAVL 92
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
F FFA +GGGD KLL +W G + + + + + +M
Sbjct: 93 AFTFTFFALGWIGGGDAKLLPVAVLWLGAGLALPFVVCASVLGAVLTLSLMQFRKMPLPV 152
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ + + + IPYG A++ L+ P+S+ F L
Sbjct: 153 LLQKRAWSSRLHTPQTGIPYGAAMAPAALLLLPESHWFAALL 194
>gi|323700594|ref|ZP_08112506.1| Prepilin peptidase [Desulfovibrio sp. ND132]
gi|323460526|gb|EGB16391.1| Prepilin peptidase [Desulfovibrio desulfuricans ND132]
Length = 260
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
V+LI L+ +L D + ++P+R+++ L +F G ++ L VG
Sbjct: 104 EWGVYLILGVMLIAGSLIDFETFLLPDRITLGGTAMALAASFFLRTGPTWQEALLGAAVG 163
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+F + + +G GDVKL+ G + + L ++L
Sbjct: 164 AGLFWVLQQLYRLWRGQEGLGTGDVKLMAMIGAMTGLSGLAPTILVGSVTGALGSVYYML 223
Query: 122 TVRMITNHIPIFGMFV 137
+
Sbjct: 224 RPGRGGIRGRVPYGPF 239
>gi|229057034|ref|ZP_04196428.1| Peptidase A24A domain protein [Bacillus cereus AH603]
gi|228720311|gb|EEL71887.1| Peptidase A24A domain protein [Bacillus cereus AH603]
Length = 249
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++DL +IPNR+ I +L + + + +L + + + C + +GG
Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWIDSLAGSGTIFILLYCMQKIYPDGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKLL+ G F++ + I R +
Sbjct: 182 GDVKLLSLLGCIVGVKGGFITLFLASCFSLCSFGIGIALKR----------------INI 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ IP+G IS+G + +Y
Sbjct: 226 RTPIPFGPFISLGAICYVLVTY 247
>gi|237733724|ref|ZP_04564205.1| prepilin peptidase [Mollicutes bacterium D7]
gi|229383322|gb|EEO33413.1| prepilin peptidase [Coprobacillus sp. D7]
Length = 260
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ V + L+ + D + IPN + I ++ ++ A L + + +
Sbjct: 108 TLVSFVLAMILLTITMIDFDTMTIPNGLVIALVAPVIVCAVLEPQISISSRVIGMASVSG 167
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F++ + GGGD+KL+ GW + L+ + GGI + +++ +
Sbjct: 168 FMLLMTLAIPDCFGGGDMKLMFVCGFMLGWINTLLAGFI-GLLAGGIYASYLMVTKKSKE 226
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +G + +G + +
Sbjct: 227 QSHMA---------------FGPYLCLGIFTALLYGNEIIRVYLS 256
>gi|281412532|ref|YP_003346611.1| peptidase A24A domain protein [Thermotoga naphthophila RKU-10]
gi|281373635|gb|ADA67197.1| peptidase A24A domain protein [Thermotoga naphthophila RKU-10]
Length = 240
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L+ +L DL + +IP+ ++ +L + A + + L+ +F++
Sbjct: 103 CVIASALIAISLIDLETFLIPDYLNFTVLIFSFVVALRT--SFLEHLISFLIVTTIFLVL 160
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ + +G GDV L PS + L I G + ++
Sbjct: 161 KVMYR-DGLGAGDVILAMGIGFLLPPVPSIFAILIAS-ISGILYALI------------- 205
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+K +IP+G +++GG + SY
Sbjct: 206 ---KGKGKMDIKTRIPFGPFLALGGYTLFLISYGMGW 239
>gi|148270126|ref|YP_001244586.1| peptidase A24A domain-containing protein [Thermotoga petrophila
RKU-1]
gi|147735670|gb|ABQ47010.1| peptidase A24A domain protein [Thermotoga petrophila RKU-1]
Length = 240
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L+ +L DL + +IP+ ++ +L + A + + L+ +F++
Sbjct: 103 CVIASALIAISLIDLETFLIPDYLNFTVLIFSFVVALRT--SFLEHLISFLIVTTIFLVL 160
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ + +G GDV L PS + L I G + ++
Sbjct: 161 KVMYR-DGLGAGDVILAMGIGFLLPPVPSIFAILIAS-ISGILYALI------------- 205
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+K +IP+G +++GG + SY
Sbjct: 206 ---KGKGKMDIKTRIPFGPFLALGGYTLFLISYGMGW 239
>gi|304316734|ref|YP_003851879.1| prepilin peptidase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778236|gb|ADL68795.1| Prepilin peptidase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 251
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 16/168 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S + L+ D+ +IPN++ + L + + L+ +
Sbjct: 97 IKSLSYAFLASLLIVITFIDIEHKIIPNKIILTGLIAGAIFRVLMFNYGVWDYIVGFFLG 156
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ + MGGGD+KL+ ++ GW + + LF +LG + + ++ +++
Sbjct: 157 GGVLLLISLLSGGGMGGGDIKLMALIGLFIGWKLTIST-LFIAVLLGAVGGIILIVLKIK 215
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K+ IP+G IS +IS Y + L
Sbjct: 216 ---------------TRKDYIPFGPYISAACIISILYGYDLLNLYIKL 248
>gi|229132199|ref|ZP_04261056.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST196]
gi|228651247|gb|EEL07225.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST196]
Length = 249
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++DL +IPNR+ I +L + + ++ + + + C +GG
Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ I+ R M
Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGAGIVLKR----------------MKM 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+++IP+G IS+G + +Y
Sbjct: 226 RSQIPFGPFISLGAICYMLVTY 247
>gi|126438727|ref|YP_001058804.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
gi|126218220|gb|ABN81726.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
Length = 166
Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 2/145 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL-V 64
M+ A++D IPN + +V L + ++ + L
Sbjct: 1 MIHLFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALVG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G + + F FFA +MG DVK+ W G P+ +I G+ ++ ++ +
Sbjct: 61 GAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGL-PALPRLWVVASIAAGVHALALMLLT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
G + + PY
Sbjct: 120 RTPPGSLGRGGAPAFALGARRAAPY 144
>gi|312143778|ref|YP_003995224.1| Prepilin peptidase [Halanaerobium sp. 'sapolanicus']
gi|311904429|gb|ADQ14870.1| Prepilin peptidase [Halanaerobium sp. 'sapolanicus']
Length = 250
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 16/174 (9%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ + L+ L+ ++ D +IPN ++ + ++A + +L
Sbjct: 91 LNFGLTAEFFLMLLLLSALIVISVIDYKYMIIPNVITYSGILIGFISAIIFDYLSIFDSL 150
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V + ++ MG GDVKL+ + G+ S +S + I +
Sbjct: 151 LGIVIPALILLAVALIFKGGMGMGDVKLVAMLGAFLGYKYSLMSIFIGSLVGSVIGLSLM 210
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K++IP+G I +G +I +
Sbjct: 211 GLG----------------VIDRKDRIPFGPFICLGAVIMIFFGEQLIDLYFAI 248
>gi|168239829|ref|ZP_02664887.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194737762|ref|YP_002116384.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|194713264|gb|ACF92485.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197287548|gb|EDY26941.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|322615017|gb|EFY11941.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617304|gb|EFY14205.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625526|gb|EFY22351.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626368|gb|EFY23177.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632120|gb|EFY28873.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635001|gb|EFY31724.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643298|gb|EFY39865.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646618|gb|EFY43125.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649964|gb|EFY46383.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652681|gb|EFY49021.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659562|gb|EFY55806.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665496|gb|EFY61683.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322670390|gb|EFY66529.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670463|gb|EFY66597.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675039|gb|EFY71122.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681576|gb|EFY77605.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685920|gb|EFY81909.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323194028|gb|EFZ79228.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196454|gb|EFZ81605.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202307|gb|EFZ87352.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207344|gb|EFZ92294.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211220|gb|EFZ96065.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216071|gb|EGA00802.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223438|gb|EGA07766.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226832|gb|EGA11022.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231806|gb|EGA15916.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233241|gb|EGA17336.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237308|gb|EGA21373.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245543|gb|EGA29542.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249049|gb|EGA32971.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250672|gb|EGA34553.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256901|gb|EGA40615.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263050|gb|EGA46597.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266050|gb|EGA49545.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272807|gb|EGA56210.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 155
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R + +L LL L + G
Sbjct: 3 VALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAG 62
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L + W W L + G V +L
Sbjct: 63 YGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALL 122
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 123 VRGKSALI---------------NPLPFGPWLAVAGFIT 146
>gi|254423256|ref|ZP_05036974.1| Bacterial Peptidase A24 N-terminal domain family [Synechococcus sp.
PCC 7335]
gi|196190745|gb|EDX85709.1| Bacterial Peptidase A24 N-terminal domain family [Synechococcus sp.
PCC 7335]
Length = 276
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 31/182 (17%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT----AFLLGMDYELIALHLL 63
+ + I L+ AL DL + +PNR++ L ++L ++
Sbjct: 105 QTPCYWIFLCWLLVLALIDLDTMTLPNRLTASGLILGWGFQGSISYLATPTLLSGMSGVV 164
Query: 64 VGLIVFIICFCFFAFNI-----------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
I F MGGGD KL A W GW L+ A+
Sbjct: 165 AAFFSSIFGLWLFDLIGIAGSSVFGKTAMGGGDSKLAAMMAAWLGWPGLLLATFLAAAMG 224
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
I ++ K +IP+G +++G ++ A +
Sbjct: 225 SLIGGSALVLG----------------MIDRKQQIPFGPYLALGATLTLFYGQQLIDAYL 268
Query: 173 GL 174
+
Sbjct: 269 SI 270
>gi|326939029|gb|AEA14925.1| ComC protein [Bacillus thuringiensis serovar chinensis CT-43]
Length = 222
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 95 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 154
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ V I+ R +
Sbjct: 155 GDIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGVGIVLKR----------------IEV 198
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ IP+G IS+G + +Y
Sbjct: 199 RKPIPFGPFISLGAICYVLAAY 220
>gi|85859141|ref|YP_461343.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB]
gi|85722232|gb|ABC77175.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB]
Length = 180
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 14/165 (8%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + + L+ A+++DL + I NR++ + L+ + L + L +
Sbjct: 10 AIIITLLVGILITASVTDLRAHRISNRLTYSTMLFGLIF-YSLTAGFFGFLQSLSGLFLG 68
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ F+ MG GDVKL+ + G F +FL I G + + + +
Sbjct: 69 LALLIVFYLVGGMGAGDVKLMAAVGSLLGPQGVFAAFLGTALIGGIYALIILAAKGYLMD 128
Query: 129 HIPIFGMFVPKSFLMKNKI-------------PYGIAISMGGLIS 160
+ F + + F+ K I YG+AIS+G L S
Sbjct: 129 TMKRFVLMLKTFFMTKKFIYIPPPRPEKAPLLCYGVAISLGTLAS 173
>gi|220915790|ref|YP_002491094.1| peptidase A24A domain protein [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953644|gb|ACL64028.1| peptidase A24A domain protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 299
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 22/174 (12%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCF----FA 77
DL + ++P+ ++ ++ + L + + A+ VG F +
Sbjct: 123 FIDLDTWLLPHALTWPLIATGLAVSAAGLGPATLQGAAIGAAVGFGAFALVSVVGEKVLR 182
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI------- 130
+G GDV LL+ W G L + V + +
Sbjct: 183 KEALGFGDVWLLSGIGAWMGVAALLPVVLLASVQGSVVGLVLLALGKGQPGPGQPAEAAG 242
Query: 131 ---------PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
P +N +P+G ++ G L L + L
Sbjct: 243 PPAAAVPGDPAALASADDWIPPRNAVPFGPFLAAGALEWLYLGDLIVRGVPSLG 296
>gi|295700372|ref|YP_003608265.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002]
gi|295439585|gb|ADG18754.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002]
Length = 180
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 54/172 (31%), Gaps = 14/172 (8%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + V L + AA +DL + IPNR+ ++ L L +
Sbjct: 1 MTLPLLPPHPVPLCVIVLAIVAASTDLTARRIPNRLIVLGLSVALAVQMSIHGPLAGALD 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L F + F+ M GDVKLL W G ++ L I G + +
Sbjct: 61 WLSGAACGFALLMPFYLLRGMAAGDVKLLMMIGAWVGPALTWRIALATFLIGGLWSLLIV 120
Query: 121 LTVRMITN--------------HIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
L + IPYG+AI+ G L
Sbjct: 121 LCRGRFARLLANLRQLIGGLAVAPLRRPSLIDARSGSVGSIPYGVAIAAGTL 172
>gi|46579674|ref|YP_010482.1| type IV prepilin-like proteins leader peptidase [Desulfovibrio
vulgaris str. Hildenborough]
gi|46449089|gb|AAS95741.1| type IV prepilin-like proteins leader peptidase [Desulfovibrio
vulgaris str. Hildenborough]
gi|311233470|gb|ADP86324.1| Prepilin peptidase [Desulfovibrio vulgaris RCH1]
Length = 267
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIV 68
AV+ + L+ A+ D ++P+ +++ A LL + ++ +VG
Sbjct: 105 AVYYVFGSALLVASFIDFELFILPDPITLGGAVLAPPAAILLLDLPWQASLAGAVVGGGG 164
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F + F MG GDVKL+ G + L + G S++ L R
Sbjct: 165 FWLVAWLFRKLRGVEGMGLGDVKLMLLIGGLCGASALPLVTIIAGCAALGA-SLWFLARR 223
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ + +IP+G +S+G ++
Sbjct: 224 EKG------------TDAREVQIPFGPFLSLGAVMHMLYGPDII 255
>gi|294012431|ref|YP_003545891.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
UT26S]
gi|292675761|dbj|BAI97279.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
UT26S]
Length = 157
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFN 79
A+++DL S +I NR+++ + G L G+ + +A+ LL GLIVF+ FA
Sbjct: 20 VASVTDLRSRIISNRLNLTVAGLAPLWWLACGLPLWPGMAVQLLAGLIVFMAFAVLFALG 79
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MGGGDVKLL + A+WF W + + + G + V ++ RM
Sbjct: 80 CMGGGDVKLLGALALWFPWQATLSMLMLMAVLGGIVTIVTVVHHRMTRRLGQP------- 132
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+IPYGIAIS L + Y+ + A
Sbjct: 133 ------QIPYGIAISFAALWLLGERYINQFA 157
>gi|187919322|ref|YP_001888353.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN]
gi|187717760|gb|ACD18983.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN]
Length = 178
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 18/165 (10%)
Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
++ AAL DL + IPN + + L + + + + + + L +
Sbjct: 14 ALVLVAALWDLQTRRIPNWLVVTGLIVAIPVQWFTHGVVDGMTMWMGGMLAGGAFFLPGY 73
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
A +MG GDVKL+ + + G + ++G I S+ I R
Sbjct: 74 AMRLMGAGDVKLMAAIGAFCGAYGAL-EIGLATCVIGAIGSLAIWLRRRQMRAGLNGAAA 132
Query: 137 VPKS-----------------FLMKNKIPYGIAISMGGLISYPDS 164
+ S +PYGIAI++G S
Sbjct: 133 LLISCATPGNGALRRSGSVAESSATGTMPYGIAIAIGSACVLFAS 177
>gi|120602845|ref|YP_967245.1| peptidase A24A domain-containing protein [Desulfovibrio vulgaris
DP4]
gi|120563074|gb|ABM28818.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Desulfovibrio vulgaris DP4]
Length = 267
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 18/164 (10%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIV 68
AV+ + L+ A+ D ++P+ +++ A LL + ++ +VG
Sbjct: 105 AVYYVFGSALLVASFIDFELFILPDPITLGGAVLAPPAAILLLDLPWQASLAGAVVGGGG 164
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F + F MG GDVKL+ G + L + G
Sbjct: 165 FWLVAWLFRKLRGVEGMGLGDVKLMLLIGGLCGASALPLVTIVAGCAALGA--------- 215
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ + + +IP+G +S+G ++
Sbjct: 216 ----SLWFLARRENGTDAREVQIPFGPFLSLGAVMHMLYGPDII 255
>gi|194435128|ref|ZP_03067363.1| type 4 prepilin peptidase [Shigella dysenteriae 1012]
gi|194416625|gb|EDX32759.1| type 4 prepilin peptidase [Shigella dysenteriae 1012]
Length = 225
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCIYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|147677781|ref|YP_001211996.1| type II secretory pathway, prepilin signal peptidase PulO and
related peptidases, prepilin signal peptidase PulO and
related peptidases [Pelotomaculum thermopropionicum SI]
gi|146273878|dbj|BAF59627.1| type II secretory pathway, prepilin signal peptidase PulO and
related peptidases, prepilin signal peptidase PulO and
related peptidases [Pelotomaculum thermopropionicum SI]
Length = 170
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ LV L+DL + I N V + L L T G + L+ +
Sbjct: 5 ILTFIVLVVCTLTDLCNKKIYNFVLLPALVIALFTHLATG-GLPQGWWSVKGLLLGIALL 63
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F F+ +G GDVK+L G F +FL G I + ++ + + + +
Sbjct: 64 FIPFSAGGIGAGDVKMLGVIGALKGPEFVFKAFLAGAVAGGIISAALLIKNKKMLATVQL 123
Query: 133 FGMFVPKSFL---------------MKNKIPYGIAISMGGLISYP 162
+ + +N IPYG AI++G L +Y
Sbjct: 124 LLLNLYFFLTGVPRIKYRAESPDIPQENVIPYGAAIAIGTLAAYL 168
>gi|332085758|gb|EGI90922.1| type IV leader peptidase family protein [Shigella dysenteriae
155-74]
Length = 223
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 73 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 132
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 133 YGVLWCIYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 192
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 193 LQRRTITTIAFGPWLALGSM 212
>gi|300903583|ref|ZP_07121505.1| peptidase, A24 family protein [Escherichia coli MS 84-1]
gi|301305544|ref|ZP_07211636.1| peptidase, A24 family protein [Escherichia coli MS 124-1]
gi|300404456|gb|EFJ87994.1| peptidase, A24 family protein [Escherichia coli MS 84-1]
gi|300839239|gb|EFK66999.1| peptidase, A24 family protein [Escherichia coli MS 124-1]
gi|315255918|gb|EFU35886.1| peptidase, A24 family protein [Escherichia coli MS 85-1]
Length = 221
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|167574000|ref|ZP_02366874.1| peptidase A24A, prepilin type IV [Burkholderia oklahomensis C6786]
Length = 164
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
V AA DL S IPNR+ + L L+ L + A L + F+
Sbjct: 2 LAVVAASIDLSSRRIPNRLIALGLAGALVAQCGLPGPHNGFAAWLAGAATGAGLLLPFYL 61
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
M GDVKL+ + W G + + + I+GG ++ ++ R + +
Sbjct: 62 LRGMAAGDVKLMLAIGAWVGPSLAL-RIVLATFIVGGAWALAVVLRRGQFRKLLANLRHL 120
Query: 138 PKS---------------FLMKNKIPYGIAISMGGLISYPDSY 165
S F +PYG+AI++G L +
Sbjct: 121 FASAALLRNPSAVRATPEFDSVGMLPYGVAIAIGTLGVLLTAA 163
>gi|309780762|ref|ZP_07675503.1| peptidase A24A, prepilin type IV [Ralstonia sp. 5_7_47FAA]
gi|308920444|gb|EFP66100.1| peptidase A24A, prepilin type IV [Ralstonia sp. 5_7_47FAA]
Length = 179
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 17/175 (9%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ S L ++ AA D+ + IPN + + L S L+ +
Sbjct: 1 MTTSTHLSLANLALILLVLTAAAYDVRTRRIPNWLVGMGLVSALVAQGMAIGVGAGCLAW 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L + +CF FF MG GDVKL+ + + G +F L + GG+L++ ++
Sbjct: 61 LGGAAVGIGLCFGFFVLGGMGAGDVKLMGAIGAFMGPFGAFHVALV-SFLAGGVLALVMV 119
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLIS 160
+R + S +K +PY +A + G L+
Sbjct: 120 LLRREARRSAAGVSALLLSIPFGSKAVHAEGQGPKHGGTIQLPYAVAFAAGTLLV 174
>gi|167746590|ref|ZP_02418717.1| hypothetical protein ANACAC_01300 [Anaerostipes caccae DSM 14662]
gi|167653550|gb|EDR97679.1| hypothetical protein ANACAC_01300 [Anaerostipes caccae DSM 14662]
Length = 258
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ + LI L D+ + IPN + + ++ FL + +
Sbjct: 104 LLKTVFLLITGALLTAVTFVDIDTMEIPNGFVLALACLGAVSLFLFPEISLPMRVIGCFA 163
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ V ++ GGGD+KL+ + + G + + FF + GG+ +++L +
Sbjct: 164 VSVPMLLLTVLIPGAFGGGDIKLMAAAGILLGAKLT-GAAFFFSVLAGGVYGIYLLAGKK 222
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K+ +G + +G + +GL
Sbjct: 223 KGG---------------KDHFAFGPFLCLGIWAAICWGNEIIGWYLGL 256
>gi|83749640|ref|ZP_00946623.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551]
gi|207728108|ref|YP_002256502.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
gi|207744156|ref|YP_002260548.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
gi|83723701|gb|EAP70896.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551]
gi|206591353|emb|CAQ56965.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
gi|206595560|emb|CAQ62487.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
Length = 177
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 17/169 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L + AA SD+ + IPN + L + L+ + L +
Sbjct: 5 TTLANLSLIVLIAIAAASDVRARRIPNWLVGSGLVAALIGQCVAQGLAAGGMAWLGGTAV 64
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+C + MG GDVKL+ + + G +F F + GG+L++ ++ +R
Sbjct: 65 GMGMCIGIYVLGGMGAGDVKLMGAIGAFMGPFGAFH-VAFVSFLAGGVLALVMVLLRREG 123
Query: 128 NHIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLIS 160
+ S K +PY +A + G L+
Sbjct: 124 QRSLAGVSTLLLSLPFGGKAMPSQQHGEKRSGTIQLPYAVAFAAGTLLV 172
>gi|15644444|ref|NP_229496.1| type IV prepilin peptidase [Thermotoga maritima MSB8]
gi|4982273|gb|AAD36763.1|AE001810_2 type IV prepilin peptidase [Thermotoga maritima MSB8]
Length = 240
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 20/157 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L+ +L DL + +IP+ ++ +L + A + + L+ I+F+I
Sbjct: 103 CVIASALIAISLIDLETYLIPDYLNFTVLIFSFVVALRT--SFLEHLISFLIVTIMFLIL 160
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ + +G GDV L PS + L I G + ++
Sbjct: 161 KAMYR-DGLGAGDVILAMGIGFLLSPVPSIFAILIAS-ISGILYALI------------- 205
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+K +IP+G +++GG + SY
Sbjct: 206 ---KGKGKMDIKTRIPFGPFLALGGYTLFLISYGMGW 239
>gi|332981712|ref|YP_004463153.1| Prepilin peptidase [Mahella australiensis 50-1 BON]
gi|332699390|gb|AEE96331.1| Prepilin peptidase [Mahella australiensis 50-1 BON]
Length = 255
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 21/173 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE---- 56
+ + L L+ + D+ +I + I ++ ++ +
Sbjct: 92 LTYGYSIELLYSLALVSSLMIISFVDIDEGIILDAALIPIVAVGIIAVAVDPSGTWQYAA 151
Query: 57 -LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
+ + ++I+ MG GD+KL+ + GW + L+F V I
Sbjct: 152 LGALVGACIIGTIYILSLIILKKEGMGIGDIKLMAAVGTLLGWQRTLLAFFIGVYIGAIA 211
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ I + M ++IP+G +S+G IS+ Y F
Sbjct: 212 GIIMIALKKK----------------DMASEIPFGPFLSIGTAISWWFGYEFI 248
>gi|114800034|ref|YP_761693.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444]
gi|114740208|gb|ABI78333.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444]
Length = 171
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + V AAL D+ IPN +++ + G F+ A + G+ E+I HL+ G
Sbjct: 1 MALMVLAAFFLSLCVVAALYDINQLKIPNWLNLTIAGLFIPAAAVSGLPLEIIGGHLMAG 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F++ F FAF I GGGD K++ + +W G +F G + + R
Sbjct: 61 GLAFVVAFGLFAFRIFGGGDAKMIPAVVLWMGPEAAFAFAFKMAIAGGICAMLILAVRRT 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGI 151
F+ F K +PYG+
Sbjct: 121 TPAE--AVPGFMRAPFQDKASVPYGV 144
>gi|157162809|ref|YP_001460127.1| type 4 prepilin peptidase [Escherichia coli HS]
gi|157068489|gb|ABV07744.1| type 4 prepilin peptidase [Escherichia coli HS]
Length = 225
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 22/167 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
R I +G +++G +I+
Sbjct: 195 LQRRTI-----------------TTIAFGPWLALGSMINLGYLAWIS 224
>gi|53719512|ref|YP_108498.1| hypothetical protein BPSL1898 [Burkholderia pseudomallei K96243]
gi|76810644|ref|YP_333337.1| hypothetical protein BURPS1710b_1938 [Burkholderia pseudomallei
1710b]
gi|254179960|ref|ZP_04886559.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
gi|254188630|ref|ZP_04895141.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
52237]
gi|254260547|ref|ZP_04951601.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
gi|52209926|emb|CAH35898.1| family A24A unassigned peptidase [Burkholderia pseudomallei K96243]
gi|76580097|gb|ABA49572.1| family A24A unassigned peptidase [Burkholderia pseudomallei 1710b]
gi|157936309|gb|EDO91979.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
52237]
gi|184210500|gb|EDU07543.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
gi|254219236|gb|EET08620.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
Length = 166
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 2/145 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL-V 64
M+ A++D IPN + +V L + ++ + L
Sbjct: 1 MIHLFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G + + F FFA +MG DVK+ W G P+ ++ G+ ++ ++ +
Sbjct: 61 GAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGL-PALPRLWVVASVAAGVHALALMLLT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
G + + PY
Sbjct: 120 RTPPGSLGRGGAPAFALGARRAAPY 144
>gi|307297486|ref|ZP_07577292.1| Prepilin peptidase [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916746|gb|EFN47128.1| Prepilin peptidase [Thermotogales bacterium mesG1.Ag.4.2]
Length = 256
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 16/169 (9%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL- 63
+ + + L+ ++ DL MIP+ I++ + + G + LL
Sbjct: 100 SLFGAISMSVLTMGLIVSSFIDLEHYMIPDFGVILVAAGGFAWSTVEGRFPANLLHALLV 159
Query: 64 -VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ F + G GDV+LL + ++ G S + + + ++
Sbjct: 160 TGAMVAFFFIANLVRKDSFGFGDVELLAALSLASGIIGSLYTIMVASFAALIVYAI---- 215
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ F + ++P+G I++GG + +
Sbjct: 216 ----------NAAAKGRKFDRRAQLPFGPFIAVGGYTTILFLDFIEALY 254
>gi|256830894|ref|YP_003159622.1| peptidase A24A domain-containing protein [Desulfomicrobium
baculatum DSM 4028]
gi|256580070|gb|ACU91206.1| peptidase A24A domain protein [Desulfomicrobium baculatum DSM 4028]
Length = 260
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 19/171 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+++ + AA DL S ++P+ ++ L T L +D+ L L G
Sbjct: 105 QWLTYMVFLGIFLVAAFIDLDSFILPDVLTYPAAILALSTPLFLPVDWLETMLGGLCGAG 164
Query: 68 VFIIC----FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+F++ + +G GD+KL+ S G + L L I V++
Sbjct: 165 IFLLLQQAYLRLRGIDALGTGDIKLMLSLGALVGLSLLPLMILLSALCALAIAVVYL--- 221
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
P+ ++ IP+G + +G +++ + +M L
Sbjct: 222 ------------RRPEGQGLRTAIPFGPFLCLGAVLTLLWGEDLLLMIMNL 260
>gi|221066741|ref|ZP_03542846.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1]
gi|220711764|gb|EED67132.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1]
Length = 189
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 1/118 (0%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL-HLLVGLIVFIICFCFFAFNIMGGG 84
DL + N + ++ L + L F +++ L+ + F+ F+A MG G
Sbjct: 19 DLRIRKVRNWMVLLGLIAGLAVLFSSKQPFQVSVWNGLVGMCLAFVALMPFYALRWMGAG 78
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
DVK +WFG++ L ++L G+ + +L + M
Sbjct: 79 DVKFAAVIGLWFGFSHHLLVIWLGGSLLAGLHGLLVLAWHSVWRSPYTDWMLAWLPSR 136
>gi|170018429|ref|YP_001723383.1| peptidase A24A prepilin type IV [Escherichia coli ATCC 8739]
gi|188494753|ref|ZP_03002023.1| type 4 prepilin peptidase [Escherichia coli 53638]
gi|194439983|ref|ZP_03072042.1| type 4 prepilin peptidase [Escherichia coli 101-1]
gi|256025938|ref|ZP_05439803.1| peptidase A24A prepilin type IV [Escherichia sp. 4_1_40B]
gi|300918308|ref|ZP_07134912.1| peptidase, A24 family protein [Escherichia coli MS 115-1]
gi|300946557|ref|ZP_07160822.1| peptidase, A24 family protein [Escherichia coli MS 116-1]
gi|300954750|ref|ZP_07167183.1| peptidase, A24 family protein [Escherichia coli MS 175-1]
gi|301021115|ref|ZP_07185155.1| peptidase, A24 family protein [Escherichia coli MS 196-1]
gi|301643845|ref|ZP_07243876.1| peptidase, A24 family protein [Escherichia coli MS 146-1]
gi|307140018|ref|ZP_07499374.1| peptidase A24A prepilin type IV [Escherichia coli H736]
gi|331644031|ref|ZP_08345160.1| leader peptidase, integral membrane protein [Escherichia coli H736]
gi|169753357|gb|ACA76056.1| peptidase A24A prepilin type IV [Escherichia coli ATCC 8739]
gi|188489952|gb|EDU65055.1| type 4 prepilin peptidase [Escherichia coli 53638]
gi|194421091|gb|EDX37119.1| type 4 prepilin peptidase [Escherichia coli 101-1]
gi|299881645|gb|EFI89856.1| peptidase, A24 family protein [Escherichia coli MS 196-1]
gi|300318301|gb|EFJ68085.1| peptidase, A24 family protein [Escherichia coli MS 175-1]
gi|300414569|gb|EFJ97879.1| peptidase, A24 family protein [Escherichia coli MS 115-1]
gi|300453803|gb|EFK17423.1| peptidase, A24 family protein [Escherichia coli MS 116-1]
gi|301077748|gb|EFK92554.1| peptidase, A24 family protein [Escherichia coli MS 146-1]
gi|309703747|emb|CBJ03088.1| bifunctional transmembrane prepilin leader peptidase/ methylase
[Escherichia coli ETEC H10407]
gi|323939242|gb|EGB35454.1| type IV leader peptidase [Escherichia coli E482]
gi|323959514|gb|EGB55167.1| type IV leader peptidase [Escherichia coli H489]
gi|331036325|gb|EGI08551.1| leader peptidase, integral membrane protein [Escherichia coli H736]
gi|332345281|gb|AEE58615.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli UMNK88]
Length = 225
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 22/167 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
R I +G +++G +I+
Sbjct: 195 LQRRTI-----------------TTIAFGPWLALGSMINLGYLAWIS 224
>gi|83718194|ref|YP_440453.1| peptidase [Burkholderia thailandensis E264]
gi|167579111|ref|ZP_02371985.1| peptidase, putative [Burkholderia thailandensis TXDOH]
gi|167617226|ref|ZP_02385857.1| peptidase, putative [Burkholderia thailandensis Bt4]
gi|257141101|ref|ZP_05589363.1| peptidase, putative [Burkholderia thailandensis E264]
gi|83652019|gb|ABC36083.1| peptidase, putative [Burkholderia thailandensis E264]
Length = 179
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 14/178 (7%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
S + + L V AA DL S IPNR+ ++ L L+ L +
Sbjct: 1 MLSDLPPQPIPLCVALLAVVAASIDLASRRIPNRLIVLGLAGALVAQCALPGPHTGFVAW 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L + F+ M GDVKL+ + W G T + L + G ++
Sbjct: 61 LAGAATGAGLLLPFYLLRGMAAGDVKLMLAIGAWVGPTLALHIALATFVVGGAWALAVVV 120
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNK--------------IPYGIAISMGGLISYPDSY 165
++ + + + L+++ +PYG+AI++G L +
Sbjct: 121 KRGLLRKLLANLRHLLASAALLRDPSAARAAPEIESVGMLPYGVAIAIGTLGVLFAAA 178
>gi|142704|gb|AAA83365.1| late competence protein [Bacillus subtilis]
Length = 248
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ ++ L+ A++D+ +IPNR+ I L + +D L
Sbjct: 94 LELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAG 153
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+F+ +GGGD+KL G +F F V I + +LT R
Sbjct: 154 FLFLAVIAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAARVLTGR-- 211
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ +P+ AI+ G +++Y + ++
Sbjct: 212 --------------LAKRQPLPFAPAIAAGSILAYLYGDSIISFYIKMA 246
>gi|331684977|ref|ZP_08385563.1| leader peptidase, integral membrane protein [Escherichia coli H299]
gi|331077348|gb|EGI48560.1| leader peptidase, integral membrane protein [Escherichia coli H299]
Length = 225
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 22/167 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + + ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
R I +G +++G +I+
Sbjct: 195 LQRRTI-----------------TTIAFGPWLALGSMINLGYLAWIS 224
>gi|320177995|gb|EFW52978.1| Leader peptidase HopD [Shigella boydii ATCC 9905]
gi|332085482|gb|EGI90648.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Shigella boydii 5216-82]
Length = 225
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 22/167 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCIYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
R I +G +++G +I+
Sbjct: 195 LQRRTI-----------------TTIAFGPWLALGSMINLGYLAWIS 224
>gi|194288839|ref|YP_002004746.1| prepilin peptidase transmembrane protein [Cupriavidus taiwanensis
LMG 19424]
gi|193222674|emb|CAQ68677.1| PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis
LMG 19424]
Length = 177
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 15/177 (8%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+S + + V I + AA DL IPN ++ + L +
Sbjct: 1 MQSATLATLVGPITIGIVTIAAAIDLDRRRIPNWLTFGAWLAALPMQAAIHGMTTGSLAW 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L L I F+ M GDVKL+ + W G ++GG+ ++ ++
Sbjct: 61 LYGWLAGLAILLPFYLLRGMAAGDVKLMAAVGAWLG-AGMVPKIALATWLIGGVWALALI 119
Query: 122 TVRMITNHIPIFGMFVPKSFL--------------MKNKIPYGIAISMGGLISYPDS 164
+ S +PYG+AI+ G L
Sbjct: 120 LFTGQARATLSRVGHMLLSMAVQHRAAPTQREARTSAGSLPYGVAIAAGTLAMLFAG 176
>gi|296133926|ref|YP_003641173.1| peptidase A24A prepilin type IV [Thermincola sp. JR]
gi|296032504|gb|ADG83272.1| peptidase A24A prepilin type IV [Thermincola potens JR]
Length = 184
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
D+ I N +++ L T + G + + L+ + + N+MG
Sbjct: 22 YYDIREQKIKNFITLPAAVLGLATNLMEG-GLTGLLFSIKGWLVPVAVLMVLYRINVMGA 80
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
GD+KL + G + SF+F V G I V +L R+ +
Sbjct: 81 GDIKLFAAIGAVMGLPFTAYSFVFSVYTGGVIALVILLKKRVFIRRM 127
>gi|108761929|ref|YP_633916.1| prepilin peptidase [Myxococcus xanthus DK 1622]
gi|7674085|sp|O30387|LEP4_MYXXD RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|2581817|gb|AAC36157.1| PilD [Myxococcus xanthus DK 1622]
gi|108465809|gb|ABF90994.1| prepilin peptidase [Myxococcus xanthus DK 1622]
Length = 335
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVF----IICFCFFAF 78
DL ++P +++ + + + AF LGMD + + VG + F + + F
Sbjct: 124 FIDLDHWILPLSMTVPGMLAGIALAFPLGMDAFRDALMGAAVGFLSFRMMEYVGWKVFQR 183
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+G GD L+ + W LF + + +L
Sbjct: 184 EALGAGDKYLVAMLGAFLTWRALLGVLLFASMQGAVVGILMLLATGRAGPRT 235
>gi|163939212|ref|YP_001644096.1| peptidase A24A domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|163861409|gb|ABY42468.1| peptidase A24A domain protein [Bacillus weihenstephanensis KBAB4]
Length = 249
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++DL +IPN + I +L + + ++ + + + C +GG
Sbjct: 122 VTDLVYMLIPNCILIWFALLLILECIFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ I+ RM
Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGAGIVLKRMKK---------------- 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+++IP+G IS+G + +Y
Sbjct: 226 RSQIPFGPFISLGAICYMLVTY 247
>gi|311031471|ref|ZP_07709561.1| peptidase A24A domain protein [Bacillus sp. m3-13]
Length = 180
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 16/167 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
V L+ +SDL +IPN++ + LG F++ F + L +
Sbjct: 28 ELIVAWTFISMLIIIVISDLHYMIIPNKILLFFLGLFIIERFFIPFQTIPDHLIGMAVGF 87
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + + MGGGDVKL GW L+F I + +L ++
Sbjct: 88 LIPLLVAVISKGGMGGGDVKLFAVLGFVLGWELVILTFFLSSLIGMIAALIGMLLGKVK- 146
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
P+G +I++ LI+Y L
Sbjct: 147 ---------------RGVPFPFGPSIALAALITYFKGEQILHWYFSL 178
>gi|261251284|ref|ZP_05943858.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891]
gi|260938157|gb|EEX94145.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891]
Length = 152
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 16/159 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M ++ V +I C V + +SD +PN++ + + + +F G
Sbjct: 1 MNLDNIIEITVVIINIVCAVQSCISDHKHRTLPNKICKSLFITNFIASFYFGY----FIQ 56
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ I+F++ + G GD+KLL + ++ + + + G L V
Sbjct: 57 SATITSIIFLVLLIVWLIGGFGAGDIKLLCAFSIGIKPELTIACLVLVGFLGGFQLVVMY 116
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L + K+ L + IPYGI IS+ G+
Sbjct: 117 LVG------------LMTKTNLFEKGIPYGIPISISGVA 143
>gi|197121088|ref|YP_002133039.1| peptidase A24A domain protein [Anaeromyxobacter sp. K]
gi|196170937|gb|ACG71910.1| peptidase A24A domain protein [Anaeromyxobacter sp. K]
Length = 299
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 22/174 (12%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCF----FA 77
DL + ++P+ ++ ++ + L + + A+ VG F +
Sbjct: 123 FIDLDTWLLPHALTWPLIATGLAASAAGLGPATLQGAAIGAAVGFGAFALVSVVGEKVLR 182
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI------- 130
+G GDV LL+ W G L + V + +
Sbjct: 183 KEALGFGDVWLLSGIGAWMGVAALLPVVLLASVQGSVVGLVLLALGKGQPGPGQPAEAAG 242
Query: 131 ---------PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
P +N +P+G ++ G L L + L
Sbjct: 243 PPAAAVPGDPAALASADDWIPPRNAVPFGPFLAAGALEWLYLGDLIVRGVPSLG 296
>gi|170288928|ref|YP_001739166.1| peptidase A24A domain-containing protein [Thermotoga sp. RQ2]
gi|170176431|gb|ACB09483.1| peptidase A24A domain protein [Thermotoga sp. RQ2]
Length = 240
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 20/157 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L+ +L DL + +IP+ ++ +L + A + + L+ I+F+I
Sbjct: 103 CVIASALIAISLIDLETFLIPDYLNFTVLIFSFVVALRT--SFLEHLISFLIVTIMFLIL 160
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ + +G GDV L PS + L I G + ++
Sbjct: 161 KAMYR-DGLGAGDVILAMGIGFLLPPVPSIFAILIAS-ISGILYALI------------- 205
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+K +IP+G +++GG + SY
Sbjct: 206 ---KGKGKMDIKTRIPFGPFLALGGYTLFLISYGMGW 239
>gi|253771841|ref|YP_003034672.1| prepilin peptidase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254163263|ref|YP_003046371.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
B str. REL606]
gi|300932228|ref|ZP_07147507.1| peptidase, A24 family protein [Escherichia coli MS 187-1]
gi|242378862|emb|CAQ33654.1| leader peptidase, integral membrane protein, subunit of GspC-O
secreton complex [Escherichia coli BL21(DE3)]
gi|253322885|gb|ACT27487.1| Prepilin peptidase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975164|gb|ACT40835.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
B str. REL606]
gi|253979320|gb|ACT44990.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
BL21(DE3)]
gi|300460052|gb|EFK23545.1| peptidase, A24 family protein [Escherichia coli MS 187-1]
Length = 225
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 22/167 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ ++ + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTSALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
R I +G +++G +I+
Sbjct: 195 LQRRTI-----------------TTIAFGPWLALGSMINLGYLAWIS 224
>gi|87121467|ref|ZP_01077356.1| type 4 prepilin-like proteins leader peptide processing enzyme PilD
[Marinomonas sp. MED121]
gi|86163310|gb|EAQ64586.1| type 4 prepilin-like proteins leader peptide processing enzyme PilD
[Marinomonas sp. MED121]
Length = 268
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 25/150 (16%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFI----ICFCFFA 77
++ D IP+ S+++LG L LL + L +L+G ++ + I
Sbjct: 138 SIIDWQHQWIPDHASLLILGLGLTLNLLLSEVALYQSVLGMLIGYLLIVSIRQIYLTLRK 197
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GD KLL + W G LFF +ILG + ++
Sbjct: 198 IEAIGLGDAKLLAALGAWQGLEN-LFYILFFASILGVLYAIL------------------ 238
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +G + ++Y +YL
Sbjct: 239 -NKQGRHQSMAFGPFLCASAFMTYFKTYLI 267
>gi|229172044|ref|ZP_04299609.1| Peptidase A24A domain protein [Bacillus cereus MM3]
gi|228611387|gb|EEK68644.1| Peptidase A24A domain protein [Bacillus cereus MM3]
Length = 249
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECVFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ V I+ R M
Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGVGIVLKR----------------MKM 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+++IP+G IS+G + +Y
Sbjct: 226 RSQIPFGPFISLGAICYMLFTY 247
>gi|255767643|ref|NP_390685.2| membrane protease and transmethylase [Bacillus subtilis subsp.
subtilis str. 168]
gi|251757293|sp|P15378|LEP4_BACSU RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; AltName: Full=Late competence
protein ComC; Includes: RecName: Full=Leader peptidase;
AltName: Full=Prepilin peptidase; Includes: RecName:
Full=N-methyltransferase
gi|225185271|emb|CAB14767.2| membrane protease and transmethylase [Bacillus subtilis subsp.
subtilis str. 168]
Length = 248
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ ++ L+ A++D+ +IPNR+ I L + +D L
Sbjct: 94 LELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAG 153
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+F+ +GGGD+KL G +F F V I + +LT R
Sbjct: 154 FLFLAVIAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGR-- 211
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ +P+ AI+ G +++Y + ++
Sbjct: 212 --------------LAKRQPLPFAPAIAAGSILAYLYGDSIISFYIKMA 246
>gi|237812064|ref|YP_002896515.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
MSHR346]
gi|237505467|gb|ACQ97785.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
MSHR346]
Length = 166
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 2/145 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL-V 64
M+ A++D IPN + +V L + ++ + L
Sbjct: 1 MIHLFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G + + F FFA +MG DVK+ W G + + +I G+ ++ ++ +
Sbjct: 61 GAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLS-ALPRLWVVASIAAGVHALALMLLT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
G + + PY
Sbjct: 120 RTPPGSLGRGGAPAFALGARRAAPY 144
>gi|325525575|gb|EGD03365.1| peptidase A24A prepilin type IV [Burkholderia sp. TJI49]
Length = 168
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 14/166 (8%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + AA +DL S IPNRV V L L+ L A L F +
Sbjct: 1 MCVTLLAIVAASTDLASRRIPNRVVAVGLAGALIAQCALHGVAAGTAGWLAGAATGFGLL 60
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F+ M GDVKL+ + W G +F L + G F + +
Sbjct: 61 LPFYLLRGMAAGDVKLMLAVGAWVGPAMAFRIVLAAFVLGGIGAVGFAIAHGRLRQMAAN 120
Query: 133 FGMFVPKSFLMKNK--------------IPYGIAISMGGLISYPDS 164
+ + +PYG+AI+ G L S
Sbjct: 121 VRALIMRRPGRPRAATADGHGPFESVGTLPYGVAIAAGTLGMLLVS 166
>gi|288818134|ref|YP_003432482.1| type 4 prepilin peptidase [Hydrogenobacter thermophilus TK-6]
gi|288787534|dbj|BAI69281.1| type 4 prepilin peptidase [Hydrogenobacter thermophilus TK-6]
gi|308751735|gb|ADO45218.1| Prepilin peptidase [Hydrogenobacter thermophilus TK-6]
Length = 249
Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 22/157 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+ V + L+ +L D + ++P+ +++ L L+T+ F + LVG
Sbjct: 96 EALVMFVFFSLLLVLSLIDWDTFLLPDSLNLGGLAFGLITSLFRTDFSFLDSLAGALVGA 155
Query: 67 IVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F + + F+ +G GDVKL+ G + L +I G + ++ I+
Sbjct: 156 VPFFLIYTFYVKVRKMEGLGFGDVKLMAFIGSVTGIWGVLYAVLL-GSIFGLLYALPIIF 214
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ +PYG +S+G +
Sbjct: 215 KNRNLSF----------------AVPYGPFLSLGCFV 235
>gi|53723522|ref|YP_102956.1| peptidase [Burkholderia mallei ATCC 23344]
gi|121599833|ref|YP_993101.1| putative peptidase [Burkholderia mallei SAVP1]
gi|124383829|ref|YP_001026122.1| putative peptidase [Burkholderia mallei NCTC 10229]
gi|126449329|ref|YP_001080606.1| peptidase A24A, prepilin type IV [Burkholderia mallei NCTC 10247]
gi|126454569|ref|YP_001066055.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
gi|134282228|ref|ZP_01768933.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
gi|226199664|ref|ZP_03795217.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
Pakistan 9]
gi|242316839|ref|ZP_04815855.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
gi|254177457|ref|ZP_04884112.1| peptidase A24A, prepilin type IV [Burkholderia mallei ATCC 10399]
gi|254199899|ref|ZP_04906265.1| peptidase A24A, prepilin type IV [Burkholderia mallei FMH]
gi|254206231|ref|ZP_04912583.1| peptidase A24A, prepilin type IV [Burkholderia mallei JHU]
gi|254297796|ref|ZP_04965249.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
gi|254358352|ref|ZP_04974625.1| peptidase A24A, prepilin type IV [Burkholderia mallei 2002721280]
gi|52426945|gb|AAU47538.1| peptidase, putative [Burkholderia mallei ATCC 23344]
gi|121228643|gb|ABM51161.1| putative peptidase [Burkholderia mallei SAVP1]
gi|124291849|gb|ABN01118.1| putative peptidase [Burkholderia mallei NCTC 10229]
gi|126228211|gb|ABN91751.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
gi|126242199|gb|ABO05292.1| peptidase A24A, prepilin type IV [Burkholderia mallei NCTC 10247]
gi|134246266|gb|EBA46355.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
gi|147749495|gb|EDK56569.1| peptidase A24A, prepilin type IV [Burkholderia mallei FMH]
gi|147753674|gb|EDK60739.1| peptidase A24A, prepilin type IV [Burkholderia mallei JHU]
gi|148027479|gb|EDK85500.1| peptidase A24A, prepilin type IV [Burkholderia mallei 2002721280]
gi|157807103|gb|EDO84273.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
gi|160698496|gb|EDP88466.1| peptidase A24A, prepilin type IV [Burkholderia mallei ATCC 10399]
gi|225928250|gb|EEH24284.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
Pakistan 9]
gi|242140078|gb|EES26480.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
Length = 166
Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 2/145 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL-V 64
M+ A++D IPN + +V L + ++ + L
Sbjct: 1 MIHLFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G + + F FFA +MG DVK+ W G + + ++ G+ ++ ++ +
Sbjct: 61 GAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLS-ALPRLWVVASVAAGVHALALMLLT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
G + + PY
Sbjct: 120 RTPPGSLGRGGAPAFALGARRAAPY 144
>gi|213646333|ref|ZP_03376386.1| type III leader peptidase [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
Length = 155
Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R +L LL L + G
Sbjct: 3 VALPFLIFYASFSLLLGIYDARTGLLPDRFICPLLWGGLLYHQICLPERLPDALWGAIAG 62
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L + W W L + G V +L
Sbjct: 63 YGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGRFGVALL 122
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 123 VRGKSALI---------------NPLPFGPWLAVAGFIT 146
>gi|237749307|ref|ZP_04579787.1| leader peptidase [Oxalobacter formigenes OXCC13]
gi|229380669|gb|EEO30760.1| leader peptidase [Oxalobacter formigenes OXCC13]
Length = 301
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 21/177 (11%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHL 62
+ L+ + L+ D + +P+ ++ L + LL + + +
Sbjct: 141 GATLNGMAALLCLYFLISLGFIDSGTGYLPDCLTYPFLWAGLLVNIKAAFVPLHIAVISA 200
Query: 63 LVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
L ++ F F + MG GD K++ + WFGW + + I V
Sbjct: 201 LSAYLICRTANAVFRFVTGNDGMGYGDFKMIAALGAWFGWICLVFIVIMASLLAIVIGLV 260
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
I + R P+G +S+ L + L S
Sbjct: 261 GIFSGRTRFEKF----------------FPFGPYLSIATLPILLYGRILMQTLNDFS 301
>gi|118476879|ref|YP_894030.1| N-methyltransferase) [Bacillus thuringiensis str. Al Hakam]
gi|229183597|ref|ZP_04310820.1| Peptidase A24A domain protein [Bacillus cereus BGSC 6E1]
gi|118416104|gb|ABK84523.1| late competence protein (includes: leader peptidase,
N-methyltransferase) [Bacillus thuringiensis str. Al
Hakam]
gi|228599840|gb|EEK57437.1| Peptidase A24A domain protein [Bacillus cereus BGSC 6E1]
Length = 249
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 122 VTDYIYMLIPNRILAWFCCLLILECVFVPLVTWTESIVGSGVIFILLYCMRKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ V ++ R M
Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLSSFFSLCFFGVGLVLKR----------------MKM 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 226 RTQIPFGPFISLGAICYMLVTY 247
>gi|26249930|ref|NP_755970.1| leader peptidase [Escherichia coli CFT073]
gi|227883466|ref|ZP_04001271.1| leader peptidase [Escherichia coli 83972]
gi|300979906|ref|ZP_07174782.1| peptidase, A24 family protein [Escherichia coli MS 45-1]
gi|301046106|ref|ZP_07193284.1| peptidase, A24 family protein [Escherichia coli MS 185-1]
gi|331659625|ref|ZP_08360563.1| leader peptidase, integral membrane protein [Escherichia coli
TA206]
gi|26110358|gb|AAN82544.1|AE016767_304 Type 4 prepilin-like proteins leader peptide processing enzyme
[Escherichia coli CFT073]
gi|227839610|gb|EEJ50076.1| leader peptidase [Escherichia coli 83972]
gi|300301932|gb|EFJ58317.1| peptidase, A24 family protein [Escherichia coli MS 185-1]
gi|300409417|gb|EFJ92955.1| peptidase, A24 family protein [Escherichia coli MS 45-1]
gi|307555422|gb|ADN48197.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli ABU 83972]
gi|315292348|gb|EFU51700.1| peptidase, A24 family protein [Escherichia coli MS 153-1]
gi|315298633|gb|EFU57888.1| peptidase, A24 family protein [Escherichia coli MS 16-3]
gi|331052840|gb|EGI24873.1| leader peptidase, integral membrane protein [Escherichia coli
TA206]
Length = 225
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + + ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTIPTIAFGPWLALGSM 214
>gi|300692329|ref|YP_003753324.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum
PSI07]
gi|299079389|emb|CBJ52060.1| putative prepilin peptidase transmembrane protein [Ralstonia
solanacearum PSI07]
Length = 175
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 51/162 (31%), Gaps = 13/162 (8%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L + AA+ D+ + +PN + I L LL L LL +
Sbjct: 10 LSLAALVTTAAVWDVRTRRVPNWLVISGLAIALLVQCLEHGVLTGSWTWLLGTATGLGLL 69
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ MG GDVKL+ + + F L + G + +L
Sbjct: 70 LGIYLLGGMGAGDVKLMGAVGAFMAPAGVFHVALVTFIVGGALALAMMLMRGNAHRSFAN 129
Query: 133 FGMFVPKS-------------FLMKNKIPYGIAISMGGLISY 161
+ ++PY +AI++G L+
Sbjct: 130 VSALLLSLPFGGKTTAAGQDKKDRTTRLPYAVAIAIGTLLVL 171
>gi|157371142|ref|YP_001479131.1| peptidase A24A prepilin type IV [Serratia proteamaculans 568]
gi|157322906|gb|ABV42003.1| peptidase A24A prepilin type IV [Serratia proteamaculans 568]
Length = 233
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 21/146 (14%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFF----AFN 79
D ++P+R++ +L + LL +G + + + +
Sbjct: 85 IDWQQRLLPDRLTQPLLWAGLLVNQQGYFVSLTEAVTGACIGYLSLWLLNVAYRHRRKTD 144
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+G GD KLL + W GG +++ + +
Sbjct: 145 GIGQGDFKLLAALGAW----------------TGGAALPMLVSGAAAAGLCATAIARLLR 188
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSY 165
++ +P+G+ +++ G + +
Sbjct: 189 KPGRQDTLPFGLYLALSGWLVLLATA 214
>gi|300704928|ref|YP_003746531.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum
CFBP2957]
gi|299072592|emb|CBJ43942.1| putative prepilin peptidase transmembrane protein [Ralstonia
solanacearum CFBP2957]
Length = 176
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 16/168 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L + AA SD+ + IPN + L + L+ L L +
Sbjct: 5 TTLANLSLIVLIAIAAASDVRARRIPNWLVGSGLVAALIGQCLAQGLAAGGMAWLGGTAV 64
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+C +A MG GDVKL+ + + G +F F + GG+L++ ++ +R
Sbjct: 65 GMGMCIGIYALGGMGAGDVKLMGAIGAFMGPFGAFH-VAFVSFLAGGVLALVMVLLRREG 123
Query: 128 NHIPIFGMFVPKSFLMKNK---------------IPYGIAISMGGLIS 160
+ S K +PY +A + G L+
Sbjct: 124 QRSLAGVSTLLLSLPFGGKAMPSQHGEKRSSTIQLPYAVAFAAGTLLV 171
>gi|218702084|ref|YP_002409713.1| putative bifunctional prepilin peptidase HopD: leader peptidase;
methyl transferase (General Secretory Pathway)
[Escherichia coli IAI39]
gi|218372070|emb|CAR19930.1| putative bifunctional prepilin peptidase HopD: leader peptidase;
methyl transferase (General Secretory Pathway)
[Escherichia coli IAI39]
Length = 129
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 20/134 (14%)
Query: 32 IPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDV 86
+P+R + +L S LL ++G F + + + +G GDV
Sbjct: 2 LPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKEGLGYGDV 61
Query: 87 KLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNK 146
K L + W WT + G + + +L +KN
Sbjct: 62 KFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKE---------------SLKNP 106
Query: 147 IPYGIAISMGGLIS 160
+P+G ++ G +
Sbjct: 107 LPFGPFLAAAGFVV 120
>gi|78066128|ref|YP_368897.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383]
gi|77966873|gb|ABB08253.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383]
Length = 164
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 2/154 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + V AL D+ IPN + I S L + + L+
Sbjct: 1 MILLTGVGVFLAWAVLVALEDIRHRRIPNSLVIGGFVSAFLVSGHNPFGI-SVNQALIGA 59
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
LI F FF +MG DVK+ W G ++ + + + R
Sbjct: 60 LIGLASLFPFFVLRVMGAADVKVFAVLGAWCGPQALLWLWIMASLLALAHVGTLVFATRT 119
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + + PY + + ++
Sbjct: 120 PVLALWQRRSPTMEIAGFRAS-PYAAFLVIPAVL 152
>gi|126696026|ref|YP_001090912.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Prochlorococcus marinus str. MIT 9301]
gi|126543069|gb|ABO17311.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Prochlorococcus marinus str. MIT 9301]
Length = 267
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 28/164 (17%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-----YELIALHLLVGLI 67
I L A+ D +P ++ S ++T+ + + + + LL L+
Sbjct: 110 CIFSVILFTLAILDFKYFWLPQVLTSGGFVSGIITSLYIDLSNDLYQFNYVIYTLLASLL 169
Query: 68 VFIICFCFFAFN-------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
F ++GGGD KL W G F+S G + V +
Sbjct: 170 GFTFFNLLSRIGKKIYNKPVIGGGDAKLGAMIGSWLGIQGLFISIWLAFISAGIFVIVGL 229
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ ++ KIP+GI +++ GL+ +
Sbjct: 230 IFKKIK----------------RNQKIPFGIFLALSGLLVWYFG 257
>gi|304399293|ref|ZP_07381159.1| peptidase A24A prepilin type IV [Pantoea sp. aB]
gi|304353219|gb|EFM17600.1| peptidase A24A prepilin type IV [Pantoea sp. aB]
Length = 257
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 21/165 (12%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + L+ A D IP+ +S ++L LL A L G + L G
Sbjct: 109 AIFIIAASGLLLLVAAIDCRHYCIPDPLSYLLLWLGLLHASLTGNE-TAAIWGALTGYCA 167
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + +G GD+KL + GW L + + ++ +L R
Sbjct: 168 LWLLAWGYRLVRGFEGLGYGDIKLFAALGACCGWQALPWIALGATVL--ALATIVMLQRR 225
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ M + +P+G +++ G + F +
Sbjct: 226 GVVQ--------------MDSPLPFGPFLAIAGWVMLVLQARFTL 256
>gi|110643576|ref|YP_671306.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Escherichia coli 536]
gi|191171606|ref|ZP_03033154.1| type 4 prepilin peptidase [Escherichia coli F11]
gi|300974014|ref|ZP_07172421.1| peptidase, A24 family protein [Escherichia coli MS 200-1]
gi|110345168|gb|ABG71405.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Escherichia coli 536]
gi|190908233|gb|EDV67824.1| type 4 prepilin peptidase [Escherichia coli F11]
gi|300309024|gb|EFJ63544.1| peptidase, A24 family protein [Escherichia coli MS 200-1]
gi|324014952|gb|EGB84171.1| peptidase, A24 family protein [Escherichia coli MS 60-1]
Length = 225
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 22/167 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + + ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
R I +G +++G +I+
Sbjct: 195 LQRRTI-----------------TTIAFGPWLALGSMINLGYLAWIS 224
>gi|225174802|ref|ZP_03728800.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
gi|225169929|gb|EEG78725.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
Length = 185
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 15/165 (9%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ + ++D+ I N V + L + L+ ++ Y L +
Sbjct: 4 VWLMFGFVTVCMITDIIERKIYNVVVLAGLVTALVLNVIVQGFYSGAVFTLAGFFTGIFL 63
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F F +G GDVK+L + G+ L + G +L + +
Sbjct: 64 LVIPFVFGGLGAGDVKMLGMIGAFTGYPVVIQVLLVSAIVGGVFALYTMLRQGKMFKRLK 123
Query: 132 ---------------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + + KN IPYG+A+S+G +I Y
Sbjct: 124 TFFLGIFCAAAARKTVHMNNLDEKDAGKNAIPYGVALSVGVIIVY 168
>gi|606269|gb|AAA58132.1| type 4 prepilin-like protein specific leader peptidase [Escherichia
coli str. K-12 substr. MG1655]
Length = 225
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPCVALGSM 214
>gi|114764954|ref|ZP_01444127.1| hypothetical protein 1100011001318_R2601_09083 [Pelagibaca
bermudensis HTCC2601]
gi|114542666|gb|EAU45690.1| hypothetical protein R2601_09083 [Roseovarius sp. HTCC2601]
Length = 165
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 6/149 (4%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
++ +D+ I N+ ++ +L + + + + + + +
Sbjct: 15 FVLPICLYVCFTDMREMRITNQANLALLLVYAVVGVFV-LPLDAYLWRYAHFGVALVAGI 73
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
A +MG GD K + + A F +A+ + L R+
Sbjct: 74 ALNAGGVMGAGDAKFIAAAA----PFIHVGDLRFLMALGAAVTLAAFLAHRIAKMTPLRR 129
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYP 162
KS+ + P G+A+ G L Y
Sbjct: 130 LAPDWKSWSSGKRFPMGVALG-GTLAIYL 157
>gi|323705273|ref|ZP_08116848.1| Prepilin peptidase [Thermoanaerobacterium xylanolyticum LX-11]
gi|323535175|gb|EGB24951.1| Prepilin peptidase [Thermoanaerobacterium xylanolyticum LX-11]
Length = 251
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 16/168 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S + L+ D+ +IPN+V ++ L + L+ + +
Sbjct: 97 IKSLSYAFLASLLIVITFIDMEHKIIPNKVILIGLIAGAAFRVLMFNYGLWDYIVGFLIG 156
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ + MGGGD+KL+ ++ GW + + LF +LG I + ++ ++
Sbjct: 157 GGVLLLISLLSGGGMGGGDIKLMAMIGLFIGWKLTIST-LFLAVVLGAIGGIAMILFKIK 215
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K+ IP+G IS+ LIS Y + L
Sbjct: 216 ---------------TRKDYIPFGPYISIACLISILYGYDLLNMYIKL 248
>gi|297516735|ref|ZP_06935121.1| bifunctional prepilin leader peptidase/ methylase [Escherichia coli
OP50]
Length = 225
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 22/167 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ ++ + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTSALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGDIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
R I +G +++G +I+
Sbjct: 195 LQRRTI-----------------TTIAFGPWLALGSMINLGYLAWIS 224
>gi|225174963|ref|ZP_03728960.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
gi|225169603|gb|EEG78400.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
Length = 193
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 29/176 (16%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ + AA D+ IPN+++ ++ L+ L IA L + F
Sbjct: 4 VLILFVALAAYFDVRQRRIPNKITFPIMIVGLVIYGFL-EGLPGIAFGFTGLLSGLFVFF 62
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
FA MG GDVK+ + G S +F + G + +++ + + + +
Sbjct: 63 IPFALGGMGAGDVKMTAAVGALMGMQFVLHSAIFTIFAGGIMAIGYLIAHKRLLSGLKNV 122
Query: 134 GMFVPKSFLMKNKI----------------------------PYGIAISMGGLISY 161
+ + L I PYG+AI+ G +++
Sbjct: 123 VGMIARPLLAMLAIRFRNPLINRFSVYFTPSPVEKKEEAIYLPYGVAIAAGAVLTL 178
>gi|83312838|ref|YP_423102.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum
magneticum AMB-1]
gi|82947679|dbj|BAE52543.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum
magneticum AMB-1]
Length = 160
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
++ + L+ AA DL + I NRV + +L +F+ A G+ E LHL
Sbjct: 2 GDIILILSAAVFVVALLDAAWGDLRALRIRNRVPLALLAAFVPAALAGGLSGEDWLLHLG 61
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
G+ F++ F+ + GGGD KL+ + +W G + FL +A++GG++++ L
Sbjct: 62 TGMACFVVAAILFSLGVWGGGDAKLVPAVTLWLGPA-ALPRFLLVMAVVGGLVALAALVR 120
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
R ++ +PYGIAI+ GGL
Sbjct: 121 RRAEAGSLRP--------ALRTHVPYGIAIAAGGL 147
>gi|196040651|ref|ZP_03107950.1| late competence protein comC [Bacillus cereus NVH0597-99]
gi|196046431|ref|ZP_03113656.1| late competence protein comC [Bacillus cereus 03BB108]
gi|225863267|ref|YP_002748645.1| late competence protein comC [Bacillus cereus 03BB102]
gi|196022615|gb|EDX61297.1| late competence protein comC [Bacillus cereus 03BB108]
gi|196028441|gb|EDX67049.1| late competence protein comC [Bacillus cereus NVH0597-99]
gi|225787313|gb|ACO27530.1| late competence protein comC [Bacillus cereus 03BB102]
Length = 240
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 113 VTDYIYMLIPNRILAWFCCLLILECVFVPLVTWTESIVGSGVIFILLYCMRKIYPEGLGG 172
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ V ++ R M
Sbjct: 173 GDIKLLSLLGFIVGLKGIFMILFLSSFFSLCFFGVGLVLKR----------------MKM 216
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 217 RTQIPFGPFISLGAICYMLVTY 238
>gi|83720453|ref|YP_443062.1| peptidase [Burkholderia thailandensis E264]
gi|83654278|gb|ABC38341.1| peptidase, putative [Burkholderia thailandensis E264]
Length = 166
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 2/145 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL-V 64
M+ A++D IPN + + L + ++ +E + L
Sbjct: 1 MIHLFSIGFFFAWAAAVAIADCRDRRIPNELVLAGLAAVIIFTVCRQNPFETTLVGALIG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G + + F FFA +MG DVK+ W G P+ ++ GI ++ +L +
Sbjct: 61 GAVGLVSLFPFFALRLMGAADVKVFAVLGAWCGL-PALPRLWIVASVAAGIHALGLLLLT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
+ + PY
Sbjct: 120 RTPLGSLGRNGAPAFALGARRSAPY 144
>gi|209515949|ref|ZP_03264810.1| peptidase A24A prepilin type IV [Burkholderia sp. H160]
gi|209503607|gb|EEA03602.1| peptidase A24A prepilin type IV [Burkholderia sp. H160]
Length = 161
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L A+ D+ S +P R +++ + + A + G+ +A HL I F +
Sbjct: 10 CLVLASLAVGDIRSRRLPTRAVLLVACLYGVDAAVTGVSIVSLAAHLGAAAIGFALFALL 69
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
F MGGGDVKL + +W G ++ F G++ + + +
Sbjct: 70 FRCGWMGGGDVKLAAAVFLWAGPAYAWPVFSIVSF--CGLVLGLMALIMGLFRRHATHTF 127
Query: 136 FVPKSFLMKNKIPYGIAISMGGLIS 160
+PYG+A+++GG+ +
Sbjct: 128 RASMQLASPRGVPYGVALALGGIAA 152
>gi|91212772|ref|YP_542758.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Escherichia coli UTI89]
gi|117625614|ref|YP_858937.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Escherichia coli APEC O1]
gi|218560396|ref|YP_002393309.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli S88]
gi|237703065|ref|ZP_04533546.1| leader peptidase [Escherichia sp. 3_2_53FAA]
gi|91074346|gb|ABE09227.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Escherichia coli UTI89]
gi|115514738|gb|ABJ02813.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Escherichia coli APEC O1]
gi|218367165|emb|CAR04939.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli S88]
gi|226902329|gb|EEH88588.1| leader peptidase [Escherichia sp. 3_2_53FAA]
gi|294489659|gb|ADE88415.1| type 4 prepilin peptidase [Escherichia coli IHE3034]
gi|307628370|gb|ADN72674.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli UM146]
gi|312947887|gb|ADR28714.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli O83:H1 str. NRG 857C]
gi|315284590|gb|EFU44035.1| peptidase, A24 family protein [Escherichia coli MS 110-3]
gi|323950249|gb|EGB46131.1| type IV leader peptidase [Escherichia coli H252]
gi|323954542|gb|EGB50325.1| type IV leader peptidase [Escherichia coli H263]
gi|324009026|gb|EGB78245.1| peptidase, A24 family protein [Escherichia coli MS 57-2]
Length = 225
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + + ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|167566931|ref|ZP_02359847.1| peptidase A24A, prepilin type IV [Burkholderia oklahomensis EO147]
Length = 164
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 14/162 (8%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
V AA DL S IPNR+ + L L+ L + A L + F+
Sbjct: 2 LAVVAASIDLSSRRIPNRLIALGLAGALVAQCGLPGPHNGFAAWLAGAATGAGLLLPFYL 61
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
M GDVKL+ + W G + + L + G +L +
Sbjct: 62 LRGMAAGDVKLMLAIGAWVGPSLALRIVLATFIVGGAWALAVVLRRGQFRKLLANLRHLF 121
Query: 138 PKSFLMKNK--------------IPYGIAISMGGLISYPDSY 165
+ L++N +PYG+AI++G L +
Sbjct: 122 ASAALLRNPSAVRAAPEFDSVGMLPYGVAIAIGTLGVLLTAA 163
>gi|160936838|ref|ZP_02084203.1| hypothetical protein CLOBOL_01727 [Clostridium bolteae ATCC
BAA-613]
gi|158440219|gb|EDP17965.1| hypothetical protein CLOBOL_01727 [Clostridium bolteae ATCC
BAA-613]
Length = 251
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 50/135 (37%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ SA+ + L+ AA D IP+ + I++L ++ + L +
Sbjct: 98 MESALMCMFSSILITAAFIDARHMYIPDGIHILILILSCISLAAGSGPAIINRLGGSLLA 157
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
F+ + +G GDVKL ++ + G P+ + L G +V ++ R+
Sbjct: 158 GGFLALVNLLSRGGVGWGDVKLFAASGLLIGAAPAITALLMGYVAAGLWYAVPLVRGRVG 217
Query: 127 TNHIPIFGMFVPKSF 141
F S
Sbjct: 218 RKTQIPMAPFFAVSL 232
>gi|229138091|ref|ZP_04266689.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST26]
gi|228645436|gb|EEL01670.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST26]
Length = 249
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
++D +IPNR+ LL + ++ ++FI+ +C +
Sbjct: 122 VTDYIYMLIPNRILAWFAC--LLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGL 179
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
GGGDVKLL+ G F+ ++ R
Sbjct: 180 GGGDVKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKR----------------M 223
Query: 142 LMKNKIPYGIAISMGGLISYPDSY 165
M+ +IP+G IS+G + +Y
Sbjct: 224 KMRTQIPFGPFISLGAICYMLVTY 247
>gi|331674836|ref|ZP_08375593.1| leader peptidase, integral membrane protein [Escherichia coli
TA280]
gi|331067745|gb|EGI39143.1| leader peptidase, integral membrane protein [Escherichia coli
TA280]
Length = 225
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|209526138|ref|ZP_03274669.1| peptidase A24A domain protein [Arthrospira maxima CS-328]
gi|209493394|gb|EDZ93718.1| peptidase A24A domain protein [Arthrospira maxima CS-328]
Length = 271
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 27/185 (14%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ +V LV +L D+ + +PN ++ L L LLG+ +
Sbjct: 98 IMPGTIVQLFGLWALLAWLVALSLIDIDTLTLPNPLTQSGLVVGLCFQGLLGLKTAGVID 157
Query: 61 HLLVGLIVFIICFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
L+VG++ ++ F MG GD KL W GW ++
Sbjct: 158 QLMVGVLGAVLGLWLFEAIAFLGSMAFGQTAMGAGDAKLAALMGAWLGWKMLLVASFIAC 217
Query: 110 AILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ I + + + +P+G +++ I+ +
Sbjct: 218 GLGAFIGAGAMAVG----------------ILDRRQPMPFGPFLAIAAGITALWGEIIVS 261
Query: 170 ALMGL 174
M L
Sbjct: 262 MYMEL 266
>gi|226227757|ref|YP_002761863.1| leader peptidase/N-methyltransferase [Gemmatimonas aurantiaca T-27]
gi|226090948|dbj|BAH39393.1| leader peptidase/N-methyltransferase [Gemmatimonas aurantiaca T-27]
Length = 296
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 19/178 (10%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--------GMD 54
+ + + L+ A++D +IP+ +I L L+ A + +
Sbjct: 116 YGVTLEALRVALFGTVLLGIAITDAKHYLIPDGFTITGLVLVLVLAIVNLFVQDTSHFVS 175
Query: 55 YELIALHLLVGLIVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
L VG I MG GD L+ G + L+ +
Sbjct: 176 AWPAILGACVGAGAITLIGWIAEVIMKREAMGFGDTTLMAVVGAAVGAERALLTIIAGAF 235
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ + + + + + P +P+G+ ++ ++
Sbjct: 236 VGAVVFLLIVGPIVKVRTARRGEPFAFPD-------VPFGVFLAPAAMLVLLWGEALI 286
>gi|254417941|ref|ZP_05031665.1| Bacterial Peptidase A24 N-terminal domain family [Brevundimonas sp.
BAL3]
gi|196184118|gb|EDX79094.1| Bacterial Peptidase A24 N-terminal domain family [Brevundimonas sp.
BAL3]
Length = 250
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 20/169 (11%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALH 61
S + A + + L+ A+ D + +P+ ++ + + L+ A + +
Sbjct: 95 GSSWLMVAATAVLGWQLLLIAIIDAENFWLPDVLTWPLAATGLIAAALIDRDSVLTHLIG 154
Query: 62 LLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
VG + + + +GGGD L W GW L+ A+ ++
Sbjct: 155 AAVGFGGLWLVGWLYKAVRKRDGLGGGDPFLFAGAGAWIGWLGLPSVLLWASAVGLSLVF 214
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
++ R S K+P+G+ +++G +++ L
Sbjct: 215 GMLVVRR---------------SVSATQKLPFGVFLAVGIWLTWLYGPL 248
>gi|255020186|ref|ZP_05292255.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase
[Acidithiobacillus caldus ATCC 51756]
gi|254970328|gb|EET27821.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase
[Acidithiobacillus caldus ATCC 51756]
Length = 261
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------DYELIALHLLVG 65
L + L+ DL + ++P+R++ + + LL L E L +L+G
Sbjct: 103 LCFAWALLALTWIDLETQLLPDRITKPGILAGLLLNGLGLWWPGIALASPESALLGVLLG 162
Query: 66 LIVFIIC----FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + F F MGGGD+K L W GW ++ + G + ++++L
Sbjct: 163 YGVLWLLAAGYFYFTQRPGMGGGDLKFLGMIGAWLGWQGMAMTLFIAAIVGGFVATLYLL 222
Query: 122 TVRMITNHIPIFG 134
+ IP
Sbjct: 223 LGKGRDYAIPFGP 235
>gi|270308527|ref|YP_003330585.1| type IV prepilin leader peptidase [Dehalococcoides sp. VS]
gi|270154419|gb|ACZ62257.1| type IV prepilin leader peptidase [Dehalococcoides sp. VS]
Length = 300
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 21/174 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA---FLLGMDYELIALHLL 63
V A+ L+ + + DL +I N + + LL + ++
Sbjct: 143 VALAISLVYLCVFITLFVIDLEKGLILNVIIYPFMVLALLLSPFYLTGDGLLANLSSSFF 202
Query: 64 VGLIVFIICFCFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
GL F + + + MG GD+K+ + G+ F++ + + G + +L
Sbjct: 203 GGLTGFGLFLLIYIASRGGMGEGDIKMAGFIGLVCGFPNIFVAIFAGIVLGGLAAAALML 262
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ + IP+G +++G + + + L+
Sbjct: 263 SGKRRK----------------GQTIPFGPFLAVGAVTAMLFGSQIMDWYLSLA 300
>gi|281180370|dbj|BAI56700.1| putative leader peptidase [Escherichia coli SE15]
Length = 225
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + + ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|229016650|ref|ZP_04173587.1| Peptidase A24A domain protein [Bacillus cereus AH1273]
gi|229022865|ref|ZP_04179385.1| Peptidase A24A domain protein [Bacillus cereus AH1272]
gi|228738400|gb|EEL88876.1| Peptidase A24A domain protein [Bacillus cereus AH1272]
gi|228744640|gb|EEL94705.1| Peptidase A24A domain protein [Bacillus cereus AH1273]
Length = 249
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 16/135 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++DL +IPNR+ I +L + + + ++ + + + C +GG
Sbjct: 122 VTDLVYMLIPNRILIWFAFLLILECIFVPLVTWIDSIAGSGTIFILLYCMQKIHPAGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKLL+ G F++ + I R+ +
Sbjct: 182 GDVKLLSLLGFIIGVKGIFITLFLASCFSLCFFGIGIALKRIK----------------I 225
Query: 144 KNKIPYGIAISMGGL 158
+ IP+G IS+G +
Sbjct: 226 RTPIPFGPFISLGAI 240
>gi|254477437|ref|ZP_05090823.1| peptidase A24A, prepilin type IV [Ruegeria sp. R11]
gi|214031680|gb|EEB72515.1| peptidase A24A, prepilin type IV [Ruegeria sp. R11]
Length = 168
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 6/162 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M S V ALSDL IPN ++ F++ L M +
Sbjct: 1 MVISAHVALWFLPFVAPLCFVVALSDLRQMRIPNWTVDLLAAIFVIVGPFL-MSWSDYGW 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ + F ++ ++G GD K + A + + + + F A+ L
Sbjct: 60 QLVHLPAGIALGFLCYSAGMVGAGDAKFAGAAAPFVAFGDLSIVVMIFSAM----LLAGF 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
LT R++ KS+ + +K P G+ + G L+ Y
Sbjct: 116 LTHRLVKYTPLRRLAPDWKSWDVGSKFPMGLCLG-GTLVVYL 156
>gi|162147489|ref|YP_001601950.1| hypothetical protein GDI_1705 [Gluconacetobacter diazotrophicus PAl
5]
gi|209545596|ref|YP_002277825.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786066|emb|CAP55648.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533273|gb|ACI53210.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus
PAl 5]
Length = 162
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 10/156 (6%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V + +I LV+AAL D+ IP++V + + G A L G I +LV +
Sbjct: 4 VVDGLVVISTIFLVYAALHDVAVRTIPDQVVVALGGLGATIAILHG----HIVGSILVAI 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
VF +CF + F +GGGDVKLL++ ++ F L G + +++ +
Sbjct: 60 CVFGLCFAIWWFGAIGGGDVKLLSAASLLFPPAAVPSWILTIAMSGGVLAGFYLMVRHRV 119
Query: 127 TNHIPIFG------MFVPKSFLMKNKIPYGIAISMG 156
T G +PY +AI+ G
Sbjct: 120 TVGPVRHGCFGRIVRSERWRMRRGGPLPYAVAIAAG 155
>gi|134299957|ref|YP_001113453.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
gi|134052657|gb|ABO50628.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
Length = 167
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 13/162 (8%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ ++ + +DL I N V L F+ G I + + +
Sbjct: 5 IALITVVLISLYTDLRYRKIYNAVLFPTFLLALTYWFVSG-GLGGILFSIKGATLGLALL 63
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS------------VFI 120
F MG GDVKLL W G +L FL + G I + +
Sbjct: 64 LIPFMLGGMGAGDVKLLAVIGAWQGPQFVWLCFLCTAIVGGIIAAVQLSKSGRLLQSLKY 123
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + PYG+AI+ G +Y
Sbjct: 124 ILFTFLPGAPKAHAFGTLTTAKAGEAFPYGVAIASGTFATYL 165
>gi|307293448|ref|ZP_07573294.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
gi|306881514|gb|EFN12730.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
Length = 150
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFN 79
A+++DL S +I NR+++ + L G+ + +A+ LLV LIVFI+ FA
Sbjct: 13 VASVTDLRSRIISNRLNLTVAALAPLWWLACGLPLWPGMAVQLLVALIVFIVFAALFALG 72
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MGGGDVKLL + A+WF W + + + G + V ++ RM
Sbjct: 73 CMGGGDVKLLGALALWFPWQATLSMLMLMAVLGGIVTIVTVVHHRMTRRLGQP------- 125
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+IPYGIAIS L + Y+ + A
Sbjct: 126 ------QIPYGIAISFAALWLLGERYINQFA 150
>gi|301052943|ref|YP_003791154.1| late competence protein [Bacillus anthracis CI]
gi|300375112|gb|ADK04016.1| late competence protein [Bacillus cereus biovar anthracis str. CI]
Length = 249
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 122 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ ++ R M
Sbjct: 182 GDIKLLSLLGFIAGLKGVFMILFLSSFFSLCFFGAGLVLKR----------------MKM 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 226 RTQIPFGPFISLGAICYLLVTY 247
>gi|168234515|ref|ZP_02659573.1| peptidase, A24 (type IV prepilin peptidase) family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194469751|ref|ZP_03075735.1| peptidase, A24 (type IV prepilin peptidase) family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194456115|gb|EDX44954.1| peptidase, A24 (type IV prepilin peptidase) family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|205331582|gb|EDZ18346.1| peptidase, A24 (type IV prepilin peptidase) family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 155
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + + + D + ++P+R + +L LL L + G
Sbjct: 3 VALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLSDALWGAIAG 62
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + +G GDVK L + W W L + G V +L
Sbjct: 63 YGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALL 122
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
N +P+G +++ G I+
Sbjct: 123 VRGKSALI---------------NPLPFGPWLAVAGFIT 146
>gi|228984479|ref|ZP_04144656.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775182|gb|EEM23571.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 249
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFVPLVTWTDSIVGSCVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKLL+ G F+ ++ R M
Sbjct: 182 GDVKLLSLLGFIMGLKGIFMIIFLASFFSLCFFGAGLVLKR----------------MKM 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 226 RTQIPFGPFISLGAICYMLVTY 247
>gi|229029075|ref|ZP_04185174.1| Peptidase A24A domain protein [Bacillus cereus AH1271]
gi|228732355|gb|EEL83238.1| Peptidase A24A domain protein [Bacillus cereus AH1271]
Length = 249
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ + + + ++ + + + C +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLIFECIFVPLVTWTDSIVGSGVIFILLHCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ V I+ R M
Sbjct: 182 GDIKLLSLLGFIAGLKGIFMILFLASCFSLCFFGVGIVLKR----------------MKM 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+++IP+G IS+G + +Y
Sbjct: 226 RSQIPFGPFISLGAICYMLVTY 247
>gi|195940476|ref|ZP_03085858.1| hypothetical protein EscherichcoliO157_29465 [Escherichia coli
O157:H7 str. EC4024]
Length = 264
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 23/139 (16%)
Query: 33 PNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVK 87
P+ ++ +L + L+ AF + + G + + + F +G GD K
Sbjct: 140 PDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLIAGREGLGYGDFK 199
Query: 88 LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
LL + W GW + S A+ G + I
Sbjct: 200 LLAALGAWCGWQ-ALPSIELAAALSGIV-----------------GYFAANNLNKNNLTI 241
Query: 148 PYGIAISMGGLISYPDSYL 166
+G ++ G++ + L
Sbjct: 242 SFGPYLAFAGIVVFISQQL 260
>gi|160913561|ref|ZP_02076252.1| hypothetical protein EUBDOL_00037 [Eubacterium dolichum DSM 3991]
gi|158434113|gb|EDP12402.1| hypothetical protein EUBDOL_00037 [Eubacterium dolichum DSM 3991]
Length = 248
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 17/155 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + L+ + D + +IPNR+ ++ + A + + + ++ +
Sbjct: 108 EVVLVFLLGMVLLCISCIDFDTMLIPNRILVIFGILVIALAEIEPLPSFKERIGGMLIVS 167
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F++ GGGD+KL+ G +FL + GG+ ++ +L +
Sbjct: 168 GFMLVMN-QLIECFGGGDIKLMFLVGYLLGGRACVFAFLI-AVLTGGVYAILLLLL---- 221
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
K K+ IP+G +S+G L+ +
Sbjct: 222 -----------KKANRKSYIPFGPFLSLGILVVFL 245
>gi|291569366|dbj|BAI91638.1| prepilin peptidase [Arthrospira platensis NIES-39]
Length = 271
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 27/185 (14%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ +V LV +L D+ + ++PN ++ L L LLG+ +
Sbjct: 98 IMPGTIVQLFGLWALLAWLVALSLIDIDTLILPNPLTQSGLVVGLCFQGLLGLKTAGVID 157
Query: 61 HLLVGLIVFIICFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
L+VG++ ++ F MG GD KL W GW ++
Sbjct: 158 QLMVGVLGAVLGLWLFEAIAFLGSMAFGQTAMGAGDAKLAALMGAWLGWKMLLVASFIAC 217
Query: 110 AILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ I + + + +P+G +++ I+ +
Sbjct: 218 GLGAFIGAGAMAVG----------------ILDRRQPMPFGPFLAIAAGITALWGEIIVS 261
Query: 170 ALMGL 174
M L
Sbjct: 262 MYMEL 266
>gi|320529765|ref|ZP_08030843.1| peptidase, A24 family protein [Selenomonas artemidis F0399]
gi|320138004|gb|EFW29908.1| peptidase, A24 family protein [Selenomonas artemidis F0399]
Length = 196
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 16/162 (9%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L++ A D+ + + +++ + + + + A+ V C
Sbjct: 51 LFSAVLLWLAFLDVRDGFLYDCITLPFAFAGVAFSAGGLTMPLIDAILGGTLCGVLFYCL 110
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
A MGGGDVK +W GW + ++ I G + + +LT R
Sbjct: 111 YIAARGGMGGGDVKFALGIGLWLGWESAIIAVWTAFLIGGMMAAFLLLTRRK-------- 162
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
++ +P+G ++ GG +++ + GL+
Sbjct: 163 --------GRRDALPFGPCLAAGGDLAFLCGDVIWRLYWGLA 196
>gi|282899579|ref|ZP_06307543.1| pilD (Peptidase A24A, prepilin type IV) [Cylindrospermopsis
raciborskii CS-505]
gi|281195458|gb|EFA70391.1| pilD (Peptidase A24A, prepilin type IV) [Cylindrospermopsis
raciborskii CS-505]
Length = 271
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 31/174 (17%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--------DYELIAL 60
+ + + L+ +L D + +P ++ L L+ LG +
Sbjct: 102 TIGYWVFCSWLLALSLIDWETMTLPGSLTKSGLVLGLIFQTTLGYVAHNTWSGTIGQLMW 161
Query: 61 HLLVGLIVFII-------CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
+ ++ + F F+ +MGGGD KL W GW ++
Sbjct: 162 GIGGMVLGLWLFDIIASLGFLFYGKPVMGGGDGKLAAMMGAWLGWQYLLVASFIACFSGV 221
Query: 114 GILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ I+ M+ K+P+G ++ G +IS +
Sbjct: 222 LVGFGAIIVCDGQ----------------MEQKMPFGPFLAWGSVISIFGGEVI 259
>gi|171463003|ref|YP_001797116.1| peptidase A24A prepilin type IV [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192541|gb|ACB43502.1| peptidase A24A prepilin type IV [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 166
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 23/168 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF---LLGMDYELIALHLLVGLIVF 69
+ LV+ A DL + +P+ +++ ++ + LL + ++ ++G
Sbjct: 12 IFLIMVLVYLAYFDLRTFRLPDAITLPLILAALLFNGLSKDGFISFQDSIAGAILGYASL 71
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + +G GD KLL + W GW + S L +I G I + L
Sbjct: 72 WLLNFLYRILKKEGGIGMGDAKLLAALGAWLGWF-ALPSILLLASITGLIGGLIWL---- 126
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ P+G +++ G+I ++ L+
Sbjct: 127 -----------QWNKQNRRSAFPFGPFLAIAGIIELLWPQTLQILLLS 163
>gi|311277723|ref|YP_003939954.1| peptidase A24A prepilin type IV [Enterobacter cloacae SCF1]
gi|308746918|gb|ADO46670.1| peptidase A24A prepilin type IV [Enterobacter cloacae SCF1]
Length = 158
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 20/160 (12%)
Query: 6 MVFSAVFLIPPFCL-VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLL 63
M+ + FL+ L V +L DL ++P+ ++ +L LL + L +
Sbjct: 2 MITALPFLLIYLMLNVALSLCDLKRHLLPDALTCPLLWFGLLFNLVCHEARLPQAVLGAI 61
Query: 64 VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
G F + + +G GDVKLL + W G + A+ L V
Sbjct: 62 AGYCAFAAVYWGYKLIRKREGLGYGDVKLLAALGAWHGGSLLPCLVTLASALALLTLGVQ 121
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ R +KN +P+G ++ GLI
Sbjct: 122 MARRR--------------SLQAIKNPLPFGPYLAAAGLI 147
>gi|253576548|ref|ZP_04853876.1| peptidase A24A prepilin type IV [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843962|gb|EES71982.1| peptidase A24A prepilin type IV [Paenibacillus sp. oral taxon 786
str. D14]
Length = 167
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L+ A ++DL + IPN +++ + + L L ++ F + F
Sbjct: 8 LLMLLAAFVTDLRTMKIPNVITVTGIFTGLSYHLLTD-GWKGAWFSAAGAATGFGLMFAL 66
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
+ +GGGDVKL W G + + ++ + G I + ++ R + +
Sbjct: 67 YLLRAVGGGDVKLFAGIGAWTGIALTLSTMMYSILAAGCIGLILLIWRRETGHRLRRIAG 126
Query: 136 FVPKSFLMKNKIP 148
+ + ++++ P
Sbjct: 127 SLLGAAMLRSPAP 139
>gi|306816322|ref|ZP_07450460.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli NC101]
gi|305850718|gb|EFM51175.1| bifunctional prepilin leader peptidase and methylase [Escherichia
coli NC101]
Length = 225
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + + ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|292670460|ref|ZP_06603886.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647870|gb|EFF65842.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 188
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 17/162 (10%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
I L++ + DL M+ + +++ L+ + + + ++F +
Sbjct: 44 IFAAALLWLSFLDLRDGMLYDCITLPFAALGLVFSMAGVGSVTDAMIGGTLCGVLFYCLY 103
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
A +GGGDVKL +W GW + ++ + G +V ++T R
Sbjct: 104 IA-ARGGLGGGDVKLAAGLGLWLGWEAAVIALWIAFMLGGTAAAVLLITGRRK------- 155
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ IP+G +++GG I + G
Sbjct: 156 ---------RHDGIPFGPFLALGGYIGFIAGDYLWRLYWGTG 188
>gi|229154972|ref|ZP_04283086.1| Peptidase A24A domain protein [Bacillus cereus ATCC 4342]
gi|228628530|gb|EEK85243.1| Peptidase A24A domain protein [Bacillus cereus ATCC 4342]
Length = 249
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFVPLVTWTDSIVGSCVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKLL+ G F+ ++ R M
Sbjct: 182 GDVKLLSLLGFIMGLKGIFMIIFLASFFSLCFFGAGLVLKR----------------MKM 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 226 RTQIPFGPFISLGAICYMLVTY 247
>gi|331649133|ref|ZP_08350219.1| leader peptidase, integral membrane protein [Escherichia coli M605]
gi|330909377|gb|EGH37891.1| leader peptidase HopD [Escherichia coli AA86]
gi|331041631|gb|EGI13775.1| leader peptidase, integral membrane protein [Escherichia coli M605]
Length = 225
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + + ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|115361030|ref|YP_778167.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
gi|115286358|gb|ABI91833.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
Length = 180
Score = 58.0 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V L + AA +D+ S IPNR+ + L L+ L L F
Sbjct: 11 VPLCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCTLHGIQAGALAWLAGAATGFG 70
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F+ M GDVKL+ + W G +F + ++GGI ++ +R +
Sbjct: 71 LLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFY-IVLATFLVGGIGAIGFALLRGRMRQM 129
Query: 131 PIFGMFV---------------PKSFLMKNKIPYGIAISMGGL 158
+ P F +PYG+AI+ G L
Sbjct: 130 CANVWALIAHRSTGAYAGATDGPVEFASVGALPYGVAIAAGTL 172
>gi|217958880|ref|YP_002337428.1| late competence protein comC [Bacillus cereus AH187]
gi|217062953|gb|ACJ77203.1| late competence protein comC [Bacillus cereus AH187]
Length = 240
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
++D +IPNR+ LL + ++ ++FI+ +C +
Sbjct: 113 VTDYIYMLIPNRILAWFAC--LLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGL 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
GGGDVKLL+ G F+ ++ R
Sbjct: 171 GGGDVKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKR----------------M 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSY 165
M+ +IP+G IS+G + +Y
Sbjct: 215 KMRTQIPFGPFISLGAICYMLVTY 238
>gi|284053732|ref|ZP_06383942.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Arthrospira platensis str. Paraca]
Length = 271
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 27/185 (14%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ +V LV +L D+ + +PN ++ L L LLG+ +
Sbjct: 98 IMPGTIVELFGLWALLAWLVALSLIDIDTLTLPNPLTQSGLVLGLCFQGLLGLKTAGVID 157
Query: 61 HLLVGLIVFIICFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
L+VG++ ++ F MG GD KL W GW ++
Sbjct: 158 QLMVGILGAVLGLWLFEAIAFLGSMAFGQTAMGAGDAKLAALMGAWLGWKMLLVASFIAC 217
Query: 110 AILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ I + + + +P+G +++ I+ +
Sbjct: 218 GLGAFIGAGAMAVG----------------ILDRRQPMPFGPFLAIAAGITALWGEIIVS 261
Query: 170 ALMGL 174
M L
Sbjct: 262 MYMEL 266
>gi|75759993|ref|ZP_00740060.1| ComC protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|228899985|ref|ZP_04064222.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 4222]
gi|228964364|ref|ZP_04125479.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|74492512|gb|EAO55661.1| ComC protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|228795304|gb|EEM42795.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228859651|gb|EEN04074.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 4222]
Length = 249
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 16/134 (11%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+D +IP+ + I +L + + + ++ + + + C +GGG
Sbjct: 123 TDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGGG 182
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
D+KLL+ G F+ + I+ R ++
Sbjct: 183 DIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGIGIVLKR----------------IEVR 226
Query: 145 NKIPYGIAISMGGL 158
IP+G IS+G +
Sbjct: 227 KPIPFGPFISLGAI 240
>gi|229195601|ref|ZP_04322367.1| Peptidase A24A domain protein [Bacillus cereus m1293]
gi|228587850|gb|EEK45902.1| Peptidase A24A domain protein [Bacillus cereus m1293]
Length = 249
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
++D +IPNR+ LL + ++ ++FI+ +C +
Sbjct: 122 VTDYIYMLIPNRILAWFAC--LLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGL 179
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
GGGD+KLL+ G F+ ++ R
Sbjct: 180 GGGDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKR----------------M 223
Query: 142 LMKNKIPYGIAISMGGLISYPDSY 165
M+ +IP+G IS+G + +Y
Sbjct: 224 KMRTQIPFGPFISLGAICYMLVTY 247
>gi|290476314|ref|YP_003469218.1| bifunctional prepilin peptidase: leader peptidase/methyl
transferase (General Secretory Pathway) (fragment)
[Xenorhabdus bovienii SS-2004]
gi|289175651|emb|CBJ82454.1| bifunctional prepilin peptidase: leader peptidase; methyl
transferase (General Secretory Pathway) (fragment)
[Xenorhabdus bovienii SS-2004]
Length = 149
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 22/152 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
++ L+F ++ D+ + +P+ ++ +L L+ + + ++ G + +
Sbjct: 1 MVFCSVLIFLSIIDIKTYQLPDVITQPLLWVGLIFNSSENLVSIKSAIYGVISGYLFLWL 60
Query: 72 CF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+G GD+KL + W G + +I G + + R
Sbjct: 61 LNKFCRYILKKEGIGYGDLKLTAAIGAWLGME-MIPVLMLLSSISGLFGFMIVWFKRKTY 119
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
I +G I + ++
Sbjct: 120 PDF----------------IAFGPYICLSAIV 135
>gi|310657534|ref|YP_003935255.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(c20) pild [Clostridium sticklandii DSM 519]
gi|308824312|emb|CBH20350.1| putative Type IV fimbrial biogenesis protein, prepilin cysteine
protease (C20) PilD [Clostridium sticklandii]
Length = 252
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 19/171 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
++ L+ A+ D +I + V +V L++ + L G
Sbjct: 95 EFLFYVSLWSMLLITAMIDYDEMIISDAVLLVFTVVGLVSILGMKAGLLTRVYGLAFGFG 154
Query: 68 VFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + + G GDV L+ + ++ G+ + L+ + + I+ + +
Sbjct: 155 FYFAIYYVAKLIYKKEAFGFGDVMLMGALGIFMGFRDTVLTSILSFYVALIIIVIMKIFG 214
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + +IP+G I + + + L
Sbjct: 215 KKTGL---------------RQEIPFGPYICIAAFLVSLYGDEIVNLYLNL 250
>gi|186896806|ref|YP_001873918.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+]
gi|186699832|gb|ACC90461.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+]
Length = 140
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
++ ++ ++ L+F SD+ +I N+ I + + ++ + + +++
Sbjct: 2 DIIRFSLMVLIVSQLLFVCYSDIRHRIISNKFVISIACNAIILSL-----VTHHTVSIII 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+I I + F FN+MGGGDVKL+T+ + S ++ + G ++ V +L R
Sbjct: 57 PIIALFIGYIIFHFNVMGGGDVKLITALLLALTAEQSLNFIIYTAVMGGIVMVVGLLINR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ K +PY +AI+ G L
Sbjct: 117 ---------------VDIQKRGVPYAVAITAGFL 135
>gi|99082194|ref|YP_614348.1| hypothetical protein TM1040_2354 [Ruegeria sp. TM1040]
gi|99038474|gb|ABF65086.1| membrane protein; putative [Ruegeria sp. TM1040]
Length = 165
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 5/158 (3%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
AL+DL S IPN + ++L L+ + LL +
Sbjct: 11 FLPFVVPLCYVVALNDLRSMRIPNWTVDTLGLIYILLGLLVMPTWADYGWQLLHLPVGIA 70
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
I + F+A ++G GD K + A +F + I L L R+ +
Sbjct: 71 IGYLFYASGLVGAGDAKFAGAAA----PYVAFADLKLIMIIFAITLLSGFLAHRLARHTP 126
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+S+ K P G+ + L Y F
Sbjct: 127 LRRLAPHWQSWNTGAKFPMGLCLG-ATLAIYLGLAAFV 163
>gi|325678263|ref|ZP_08157891.1| peptidase, A24 family [Ruminococcus albus 8]
gi|324110026|gb|EGC04214.1| peptidase, A24 family [Ruminococcus albus 8]
Length = 277
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 23/165 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-FLLTAFLLGMDYELIALHLLVG 65
+F A I AAL+D IPN + S ++ D + I L
Sbjct: 127 LFFAKMAIMCGITGAAALTDFKRRKIPNALIACGAVSRGIIYVLEFIFDRDEILFTLKND 186
Query: 66 LIVFIICFC------FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
LI F++ F + +G GDVKL V G T L I+ + ++
Sbjct: 187 LIGFLLGFVMLFVVAIISKGGIGYGDVKLFGVLGVMAGSTG-LYMTLLISLIINSVTALG 245
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ R +K+ +P I ++
Sbjct: 246 LMAARKK---------------TIKSTLPMAPFIYAAFVVVCILG 275
>gi|15606720|ref|NP_214100.1| type 4 prepilin peptidase [Aquifex aeolicus VF5]
gi|2983947|gb|AAC07495.1| type 4 prepilin peptidase [Aquifex aeolicus VF5]
Length = 254
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 22/158 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V V+ L+ ++ D + ++P ++I L +L + F + + + +VG
Sbjct: 99 VDGVVYYFFFSALLVMSIIDWYYFILPPGINIGGLVLGILVSPFRQDITPKESIIGAVVG 158
Query: 66 LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+++ + + ++ +G GDV LL G F + + G + ++ ++
Sbjct: 159 VLIPFVIYLYYVKFRKIEGLGFGDVILLGFIGSVSGVYGVFSALFIGSFL-GLLYALPMI 217
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
N +P+G +S+G I
Sbjct: 218 IRHKSMNF----------------ALPFGPFLSLGAFI 239
>gi|239618069|ref|YP_002941391.1| peptidase A24A domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239506900|gb|ACR80387.1| peptidase A24A domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 251
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--VG 65
+ + L+ ++ DL +IP+ I++ +L ++ G E++ L
Sbjct: 96 QALALDLVAAGLIISSFIDLEHYLIPDTGIILIGIGAVLFSYYQGRFPEILIHAALVTGA 155
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++ F + + G GDV+L+ + ++ G S + LF V I
Sbjct: 156 MVAFFLIANAVKKDSFGFGDVELIGALSLASGLLGSLYTVLFSSIAALLTYLVII----- 210
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
+ F +IP+G I++GG
Sbjct: 211 ---------GVKGEKFEGTKQIPFGPFIAIGG 233
>gi|65318672|ref|ZP_00391631.1| COG1989: Type II secretory pathway, prepilin signal peptidase PulO
and related peptidases [Bacillus anthracis str. A2012]
gi|228926435|ref|ZP_04089507.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228932686|ref|ZP_04095559.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228945003|ref|ZP_04107364.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229120944|ref|ZP_04250186.1| Peptidase A24A domain protein [Bacillus cereus 95/8201]
gi|228662604|gb|EEL18202.1| Peptidase A24A domain protein [Bacillus cereus 95/8201]
gi|228814672|gb|EEM60932.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228826944|gb|EEM72705.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228833259|gb|EEM78824.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 249
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 122 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ ++ R M
Sbjct: 182 GDIKLLSLLGFIAGLKGVFMILFLSSFFSLCFFGAGLVLKR----------------MKM 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 226 RTQIPFGPFISLGAICYMLVTY 247
>gi|171057239|ref|YP_001789588.1| peptidase A24A domain-containing protein [Leptothrix cholodnii
SP-6]
gi|170774684|gb|ACB32823.1| peptidase A24A domain protein [Leptothrix cholodnii SP-6]
Length = 315
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 22/168 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVG 65
S V+ + L+ AL DL + ++P+ ++ +LG L +A++ E AL +L G
Sbjct: 159 TSVVYCVAAALLIAMALIDLDTTLLPDSLTYALLGLGLFSAWMGWTPLRLEDAALGVLFG 218
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+A M GD KLL + G L + + +L
Sbjct: 219 YGSLWALTTLYALLRGVRGMAEGDFKLLAALGALLGVAQLLPIVLLASLVGAAVGIFLVL 278
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ + IP+G ++ GGL +
Sbjct: 279 A----------------RGHQREVPIPFGPYLAGGGLAAMFFGPQLLR 310
>gi|293412754|ref|ZP_06655422.1| predicted protein [Escherichia coli B354]
gi|291468401|gb|EFF10894.1| predicted protein [Escherichia coli B354]
Length = 225
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + + ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 75 IVTGALFLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAG 134
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 135 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 194
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 195 LQRRTITTIAFGPWLALGSM 214
>gi|21222932|ref|NP_628711.1| type IV peptidase [Streptomyces coelicolor A3(2)]
gi|5042290|emb|CAB44544.1| putative type IV peptidase [Streptomyces coelicolor A3(2)]
Length = 259
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 22/159 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-----LHL 62
+AV+L+ V A+ DL +P+ +++ + G+ L+ L + E L
Sbjct: 107 EAAVWLLLAPVGVLLAVVDLKVRRLPDPLTLPLAGAALVLLGLTALVPEHAGECTTALLG 166
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ L + MG GDVKL + GW L F +LG + +
Sbjct: 167 ALALGAGYLVLFLINPAGMGFGDVKLALTAGAVLGWYGWPTLMLGTFAGFLLGALYGGAL 226
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L R K IP+G + G +
Sbjct: 227 LVARRA---------------DRKTAIPFGPFLIAGAFL 250
>gi|158335569|ref|YP_001516741.1| type IV pilus prepilin peptidase PilD [Acaryochloris marina
MBIC11017]
gi|158305810|gb|ABW27427.1| type IV pilus prepilin peptidase PilD [Acaryochloris marina
MBIC11017]
Length = 279
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 30/167 (17%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLL 63
+ + + + L+ AL DL ++P+ ++ + + S + L+G A
Sbjct: 101 LQTLGYWLFASVLISLALIDLDVMLLPSPLTRLGVISGVTFQTLVGWHQNGLTGAAQGFT 160
Query: 64 VGLIVFIICFCF-----------FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
G + I F MGGGD KL+ W GW L+ +
Sbjct: 161 FGALGVIAGIWLIDVIGLLAGLIFRRAAMGGGDSKLMAMIGAWLGWRYMLLTLFLACLVG 220
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + ++ + IP+G + +G L+
Sbjct: 221 SVVGIGGRVFGKLGKFQV----------------IPFGPFLVLGALL 251
>gi|172065270|ref|YP_001815982.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
gi|171997512|gb|ACB68429.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
Length = 179
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 16/163 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L + AA +D+ S IPNR+ + L L+ L L F
Sbjct: 10 IPLCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGAATGFG 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F+ M GDVKL+ + W G +F + ++GGI ++ +R +
Sbjct: 70 LLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFY-IVLATFLVGGIGAIGFALLRGRMRQM 128
Query: 131 PIFGMFV---------------PKSFLMKNKIPYGIAISMGGL 158
+ P F +PYG+AI+ G L
Sbjct: 129 CANVWTLIARRSTGAYAGATDGPVEFASVGALPYGVAIAAGTL 171
>gi|228907036|ref|ZP_04070900.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 200]
gi|228852540|gb|EEM97330.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 200]
Length = 249
Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 16/134 (11%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+D +IP+ + I +L + + + ++ + + + C +GGG
Sbjct: 123 TDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGGG 182
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
D+KLL+ G F+ + I+ R ++
Sbjct: 183 DIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGIGIVLKR----------------IEVR 226
Query: 145 NKIPYGIAISMGGL 158
IP+G IS+G +
Sbjct: 227 KPIPFGPFISLGAI 240
>gi|308188359|ref|YP_003932490.1| Type 4 prepilin-like proteins leader peptide- processing enzyme
[Pantoea vagans C9-1]
gi|308058869|gb|ADO11041.1| Type 4 prepilin-like proteins leader peptide- processing enzyme
[Pantoea vagans C9-1]
Length = 255
Score = 57.6 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 21/156 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + L+ A D IP+ +S ++L LL A + G + L G
Sbjct: 107 AIFIITASSLLLLVAAIDRHHFCIPDPLSYLLLWLGLLHATVTGNE-TAAIWGALSGYCT 165
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + +G GD+KL + GW L + + ++ +L R
Sbjct: 166 LWLLAWSYRQVRGHEGLGYGDMKLFAALGACCGWQALPWIALGSTFL--ALATIVMLQRR 223
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
I K+ +P+G +++ G ++
Sbjct: 224 GI--------------IQGKSPLPFGPFLAIAGWVT 245
>gi|167624208|ref|YP_001674502.1| peptidase A24A prepilin type IV [Shewanella halifaxensis HAW-EB4]
gi|167354230|gb|ABZ76843.1| peptidase A24A prepilin type IV [Shewanella halifaxensis HAW-EB4]
Length = 188
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 14/176 (7%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+I + A + DL IPN + + + L + + + + FII
Sbjct: 10 VVIAGVFFILAIVVDLTREKIPNWLCLFAIFCGFLVNGY-FAHLSGLMISFIGFSLAFII 68
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-------- 123
F F F I+G GD+KL+ G + + I G + S+ ++
Sbjct: 69 LFPTFIFKILGAGDIKLMMGIGALMGPQ-LLAWSIAYGIIAGAVTSILLIIWKSGFSGCI 127
Query: 124 ----RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
R + ++PY A+++G + + + +S
Sbjct: 128 KTFKRYWDCFYLRTYFKPEEGEAAGQRVPYAPALAIGWVWACSLNQDITHLYTSVS 183
>gi|47566191|ref|ZP_00237219.1| prepilin peptidase, type IV [Bacillus cereus G9241]
gi|47556744|gb|EAL15075.1| prepilin peptidase, type IV [Bacillus cereus G9241]
Length = 240
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 113 VTDYIYMLIPNRILAWFACLLILECAFVPLVTWTDSIVGSCVIFILLYCMQKIYPEGLGG 172
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKLL+ G F+ ++ R M
Sbjct: 173 GDVKLLSLLGFIMGLKGIFMIIFLASFFSLCFFGAGLVLKR----------------MKM 216
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 217 RTQIPFGPFISLGAICYMLVTY 238
>gi|228920117|ref|ZP_04083466.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228839573|gb|EEM84865.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 249
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ L + I R +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFLGIGIGLKR----------------IEV 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ IP+G IS+G + +Y
Sbjct: 226 RKPIPFGPFISLGAMCYVLAAY 247
>gi|195940440|ref|ZP_03085822.1| hypothetical protein EscherichcoliO157_29285 [Escherichia coli
O157:H7 str. EC4024]
Length = 211
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 21/163 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ + ++ S + ++ L A DL S ++P ++ + S LL +
Sbjct: 59 LNQLSLIQSIIVIVFYAFLTLMACIDLLSFLLPRLYTVTFIFSGLLYQTWNNNILSGLFC 118
Query: 61 HLLVGLIVFIICFCFFAFNI---MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+L+ I+ + F N G GDV L+ T VWF S +F I G I
Sbjct: 119 AMLMFFIMLFVRLYFAYKNGTESFGMGDVLLIAGTGVWFPTPEIACSIVFIAVIGGIIF- 177
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K IP+G + G +
Sbjct: 178 -----------------FTLGGLNKQKKYIPFGPFLCGGMFVY 203
>gi|296156487|ref|ZP_06839325.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1]
gi|295893086|gb|EFG72866.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1]
Length = 178
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 16/163 (9%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
+ AAL D+ + IPN + L + + + E + + L L I +A
Sbjct: 15 LVFVAALWDMQTRRIPNWLVAAGLIAAMPVQWFTHGAVEGMTMWLGGMLAGGAIFLPGYA 74
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI----------- 126
++G GDVKL+ + + G + L I L R +
Sbjct: 75 MRLLGAGDVKLMAAIGAFCGAYGALEIGLATCVIGAIGSLAIWLRRRQMCAGLSGMAALL 134
Query: 127 -----TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ +PYG+AI++G S
Sbjct: 135 IDCATPGNGARRRSGSVAESSATGTMPYGVAIAIGSACVLFAS 177
>gi|284047857|ref|YP_003398196.1| peptidase A24A domain protein [Acidaminococcus fermentans DSM
20731]
gi|283952078|gb|ADB46881.1| peptidase A24A domain protein [Acidaminococcus fermentans DSM
20731]
Length = 772
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 46/158 (29%), Gaps = 13/158 (8%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
AV L+ ++ + D+ + + FL+ L D+
Sbjct: 100 MPGSPAVLAVRLLCLSLMLVVSWLDMDELQLYEDFFPPLGLLFLILHGLTDGDFLGPVAG 159
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + MG GD KL +W G SF A+ LSV L
Sbjct: 160 AAILWALLALIHW-QVPEGMGAGDPKLAAVMGLWLGPVLGLRSFFL--AMGMAFLSVAFL 216
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + M ++P GL+
Sbjct: 217 GFKTHSR----------WQEHMAMQVPLAPFFFGAGLL 244
>gi|116748928|ref|YP_845615.1| peptidase A24A, prepilin type IV [Syntrophobacter fumaroxidans
MPOB]
gi|116697992|gb|ABK17180.1| peptidase A24A, prepilin type IV [Syntrophobacter fumaroxidans
MPOB]
Length = 187
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 15/160 (9%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L+ A+ D+ I N + M+ L L G E + L + +
Sbjct: 12 LLCVVLIVVAVEDMRKHRIRNVYTFPMVAVGLSFHALSG-GLEGLVFSLKGLGLGIVFLI 70
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+ IMG GDVKL+ + G F +FL G + + ++ T
Sbjct: 71 FPYLLGIMGAGDVKLMGAVGSILGSRGVFAAFLLTCVAGGVLAVILMVLNSKHTMKRLSA 130
Query: 134 GMFVPKSFLMKN--------------KIPYGIAISMGGLI 159
+ + + YG AI+ G +
Sbjct: 131 AWAAARRLPAEGRASGVPPGGDLKRPGLAYGAAIATGTIA 170
>gi|251789644|ref|YP_003004365.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591]
gi|247538265|gb|ACT06886.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591]
Length = 185
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 66/182 (36%), Gaps = 19/182 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--- 57
M V SA L+ CLV+ SDL IPNR + +L +L + L
Sbjct: 1 MAGQFGVQSAYNLLLVVCLVWCIGSDLLLRRIPNRAVLALLLGWLALSALATAGVTGPLP 60
Query: 58 -----IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
+ L L+VF++ F F +G GDVKL++ +W G+ +
Sbjct: 61 RLSGSLLQALPGALLVFVVGFLLFLTGRLGAGDVKLMSVLCLWVGYGHQISFVMVTAIAG 120
Query: 113 GGIL-----------SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
G + V +L RM S + IPYGIAI+ G
Sbjct: 121 GILALSLPLLNTCSTGVALLIERMNHLLKINITPPPMLSAELSQGIPYGIAIAFGAAYIL 180
Query: 162 PD 163
Sbjct: 181 IW 182
>gi|171317757|ref|ZP_02906939.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
gi|171097107|gb|EDT41960.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
Length = 159
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 7/151 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V L F LV A DL + NR + +L+ A L+ A H+ +
Sbjct: 4 LVQLAATFVLVSIAAQDLRERRVSNRAVLAFAMLYLVAAALVREGLAPFAGHVATAAAML 63
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ +GGGDVKL + +W G T + A + V
Sbjct: 64 VVFGGLRHAGWLGGGDVKLAAAVFLWAGPTLALPVLTIVGASGAACGLAMLAAVARQRRI 123
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
P M +PYG+A+++GG+++
Sbjct: 124 APAHTM-------ATRGVPYGVALALGGVLA 147
>gi|228951785|ref|ZP_04113884.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229068955|ref|ZP_04202249.1| Peptidase A24A domain protein [Bacillus cereus F65185]
gi|229078589|ref|ZP_04211147.1| Peptidase A24A domain protein [Bacillus cereus Rock4-2]
gi|228704733|gb|EEL57161.1| Peptidase A24A domain protein [Bacillus cereus Rock4-2]
gi|228714239|gb|EEL66120.1| Peptidase A24A domain protein [Bacillus cereus F65185]
gi|228807907|gb|EEM54427.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 249
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 122 VTDYLYMLIPDCILISFAFLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I R +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR----------------IEV 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ IP+G IS+G + +Y
Sbjct: 226 RKPIPFGPFISLGAICYVLAAY 247
>gi|157375511|ref|YP_001474111.1| hypothetical protein Ssed_2374 [Shewanella sediminis HAW-EB3]
gi|157317885|gb|ABV36983.1| hypothetical protein Ssed_2374 [Shewanella sediminis HAW-EB3]
Length = 191
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 12/183 (6%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
S+ + + + A DL+ IPN++S++ + + +
Sbjct: 2 SETQLTIQLTLAGVFFITAISVDLYKEKIPNKLSLLAIFCGFAINAYYAQ-LAGVLMACF 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI--- 120
+ FI+ F F F I+G GD+KL+ G F S ++ + G + I
Sbjct: 61 GFGLAFILLFPTFIFRILGAGDIKLMMGIGALMGPDLLFSSLVYGIVAGAGTSLILITWK 120
Query: 121 --------LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
R ++PY A+++G L +
Sbjct: 121 AGFRGLFKTVKRYWDCFYLRTYFKPESDEAAGQRVPYAPALAIGWLWACSLDKDIVALYQ 180
Query: 173 GLS 175
S
Sbjct: 181 NWS 183
>gi|153834037|ref|ZP_01986704.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi
HY01]
gi|148869592|gb|EDL68582.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi
HY01]
Length = 162
Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 12/153 (7%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ L+ +SD IPN+ +++L + +TA L HL GL+ F C
Sbjct: 5 LVIWSLLIAIGVSDAQKHRIPNKAVLLLLTA--VTANLAFNANSDGLDHLYGGLVTFAAC 62
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + F +M GGDVKLL W G + + + GG++ +F L + + ++ +
Sbjct: 63 FVLYLFKVMAGGDVKLLAVIGAWLGLSN-IGEATVGIILAGGVVGLFYLALYVCSSTTSL 121
Query: 133 FGMFVPKSFLMKNK---------IPYGIAISMG 156
F IP+ I +G
Sbjct: 122 TEQFKGYCLEKVTPGIKTAKPMVIPFAPVIVIG 154
>gi|42780493|ref|NP_977740.1| late competence protein comC [Bacillus cereus ATCC 10987]
gi|42736412|gb|AAS40348.1| late competence protein comC [Bacillus cereus ATCC 10987]
Length = 240
Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 20/144 (13%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
++D +IPNR+ LL + + ++ ++FI+ +C +
Sbjct: 113 VTDYIYMLIPNRILAWFAC--LLILECVFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGL 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
GGGD+KLL+ G F+ ++ R
Sbjct: 171 GGGDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKR----------------M 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSY 165
M+ +IP+G IS+G + +Y
Sbjct: 215 KMRTQIPFGPFISLGAICYMLVTY 238
>gi|172062957|ref|YP_001810608.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
gi|171995474|gb|ACB66392.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
Length = 159
Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 7/151 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V L LV A+ DL + NR + + + A L A H+ +
Sbjct: 4 LVQLTATLVLVSIAMQDLRERRVSNRAVLAFAMLYPVAAALGREGLAPFAGHVATAAAML 63
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ +GGGDVKL + +W G + + V
Sbjct: 64 VVFGALRHAGWLGGGDVKLAAAVFLWAGPPLALPVLTIVGTSGAACGLAMLAGVARQRRV 123
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
P M +PYG+A++ GG ++
Sbjct: 124 APAHPM-------ATRGVPYGVALAFGGALA 147
>gi|114328354|ref|YP_745511.1| A24 family peptidase [Granulibacter bethesdensis CGDNIH1]
gi|114316528|gb|ABI62588.1| peptidase family A24 [Granulibacter bethesdensis CGDNIH1]
Length = 248
Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 21/154 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL--LTAFLLGMDYELIALHLLVGLIVFI 70
I + L+ A DL +P+ +++ ++ + + +
Sbjct: 101 CILGWALLALACIDLRHWRLPDVLTLPLILLGMGEAIWLDPATLLWPRVTGIAMAYGTLT 160
Query: 71 ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ +G GD KL + A W G T +L +
Sbjct: 161 ALGVLYRLLRGREGLGAGDAKLFAAGAAWTGLTALPG---------------ILLLAALG 205
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
SF IP+G A++ I
Sbjct: 206 GLIHAAIRASRGSSFSPHAAIPFGPALAAAIWIV 239
>gi|218896337|ref|YP_002444748.1| late competence protein comC [Bacillus cereus G9842]
gi|218545239|gb|ACK97633.1| late competence protein comC [Bacillus cereus G9842]
Length = 240
Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 16/134 (11%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+D +IP+ + I +L + + + ++ + + + C +GGG
Sbjct: 114 TDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGGG 173
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
D+KLL+ G F+ + I+ R ++
Sbjct: 174 DIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGIGIVLKR----------------IEVR 217
Query: 145 NKIPYGIAISMGGL 158
IP+G IS+G +
Sbjct: 218 KPIPFGPFISLGAI 231
>gi|30261407|ref|NP_843784.1| late competence protein comC [Bacillus anthracis str. Ames]
gi|47526583|ref|YP_017932.1| late competence protein comC [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184237|ref|YP_027489.1| late competence protein comC [Bacillus anthracis str. Sterne]
gi|165870403|ref|ZP_02215058.1| late competence protein comC [Bacillus anthracis str. A0488]
gi|167634416|ref|ZP_02392737.1| late competence protein comC [Bacillus anthracis str. A0442]
gi|167639212|ref|ZP_02397484.1| late competence protein comC [Bacillus anthracis str. A0193]
gi|170686641|ref|ZP_02877861.1| late competence protein comC [Bacillus anthracis str. A0465]
gi|170706232|ref|ZP_02896693.1| late competence protein comC [Bacillus anthracis str. A0389]
gi|177651410|ref|ZP_02934199.1| late competence protein comC [Bacillus anthracis str. A0174]
gi|190568727|ref|ZP_03021631.1| late competence protein comC [Bacillus anthracis Tsiankovskii-I]
gi|196035388|ref|ZP_03102793.1| late competence protein comC [Bacillus cereus W]
gi|218902512|ref|YP_002450346.1| late competence protein comC [Bacillus cereus AH820]
gi|227815854|ref|YP_002815863.1| late competence protein comC [Bacillus anthracis str. CDC 684]
gi|229603371|ref|YP_002865823.1| late competence protein comC [Bacillus anthracis str. A0248]
gi|254682535|ref|ZP_05146396.1| late competence protein comC [Bacillus anthracis str. CNEVA-9066]
gi|254726197|ref|ZP_05187979.1| late competence protein comC [Bacillus anthracis str. A1055]
gi|254733953|ref|ZP_05191667.1| late competence protein comC [Bacillus anthracis str. Western North
America USA6153]
gi|254740359|ref|ZP_05198050.1| late competence protein comC [Bacillus anthracis str. Kruger B]
gi|254753747|ref|ZP_05205782.1| late competence protein comC [Bacillus anthracis str. Vollum]
gi|254758843|ref|ZP_05210870.1| late competence protein comC [Bacillus anthracis str. Australia 94]
gi|30255261|gb|AAP25270.1| late competence protein comC [Bacillus anthracis str. Ames]
gi|47501731|gb|AAT30407.1| late competence protein comC [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178164|gb|AAT53540.1| late competence protein comC [Bacillus anthracis str. Sterne]
gi|164713898|gb|EDR19420.1| late competence protein comC [Bacillus anthracis str. A0488]
gi|167512651|gb|EDR88025.1| late competence protein comC [Bacillus anthracis str. A0193]
gi|167530304|gb|EDR93030.1| late competence protein comC [Bacillus anthracis str. A0442]
gi|170128766|gb|EDS97632.1| late competence protein comC [Bacillus anthracis str. A0389]
gi|170669164|gb|EDT19907.1| late competence protein comC [Bacillus anthracis str. A0465]
gi|172082688|gb|EDT67751.1| late competence protein comC [Bacillus anthracis str. A0174]
gi|190560143|gb|EDV14124.1| late competence protein comC [Bacillus anthracis Tsiankovskii-I]
gi|195992065|gb|EDX56028.1| late competence protein comC [Bacillus cereus W]
gi|218540179|gb|ACK92577.1| late competence protein comC [Bacillus cereus AH820]
gi|227006947|gb|ACP16690.1| late competence protein comC [Bacillus anthracis str. CDC 684]
gi|229267779|gb|ACQ49416.1| late competence protein comC [Bacillus anthracis str. A0248]
Length = 240
Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 113 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 172
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ ++ R M
Sbjct: 173 GDIKLLSLLGFIAGLKGVFMILFLSSFFSLCFFGAGLVLKR----------------MKM 216
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 217 RTQIPFGPFISLGAICYMLVTY 238
>gi|295109284|emb|CBL23237.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family
A24A [Ruminococcus obeum A2-162]
Length = 199
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 44/110 (40%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
S ++ + L+ +L D + IP +++ + ++ L + + +
Sbjct: 49 SLLYCLMTSALLTLSLIDWRTYEIPFGINVFLFLIGIVATVLDRGNLISHLIGAVCVSAF 108
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
I F +GGGD+KL+ + GW L+FL I + ++
Sbjct: 109 LEILFLLSGGRAIGGGDIKLMAVCGLILGWKQIILAFLLGCIIGSVVHTI 158
>gi|313895200|ref|ZP_07828757.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430]
gi|312976095|gb|EFR41553.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430]
Length = 189
Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L++ A D+ + + +++ + ++ + + A+ V C
Sbjct: 44 LFSAVLLWLAFLDVRDGFLYDCITLPFAFAGVVFSAGGLTMPLIDAILGGTLCGVLFYCL 103
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
A MGGGDVK +W GW + ++ I G + + +LT R
Sbjct: 104 YIAARGGMGGGDVKFALGIGLWLGWESAIIAVWTAFLIGGMMAAFLLLTRRK-------- 155
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
++ +P+G ++ GG +++ + GL+
Sbjct: 156 --------GRRDALPFGPCLAAGGYLAFLCGDVIWRLYWGLA 189
>gi|313901014|ref|ZP_07834502.1| bacterial peptidase A24, N-terminal domain protein [Clostridium sp.
HGF2]
gi|312953972|gb|EFR35652.1| bacterial peptidase A24, N-terminal domain protein [Clostridium sp.
HGF2]
Length = 255
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 16/166 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + L + D + IPN + I ++ + L + + +
Sbjct: 103 TVLVFAVFMILFTITMIDFDTMTIPNGLIISLIVPVGIFTVLHPETALMTRAIGFFIVSL 162
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ + GGGD+KL+ GW + L+F V I G +L+ +
Sbjct: 163 PMYLLTLLIPDCFGGGDIKLIAVAGFLLGWKLTLLAFFISVLIGGSYAVYLLLSRKTQK- 221
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
I +G + G +IS + L
Sbjct: 222 ---------------GAHIAFGPYLCAGIMISLLYGETLIQGYLSL 252
>gi|321312338|ref|YP_004204625.1| membrane protease and transmethylase [Bacillus subtilis BSn5]
gi|291485220|dbj|BAI86295.1| hypothetical protein BSNT_04077 [Bacillus subtilis subsp. natto
BEST195]
gi|320018612|gb|ADV93598.1| membrane protease and transmethylase [Bacillus subtilis BSn5]
Length = 178
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ ++ L+ A++D+ +IPNR+ I L + +D L
Sbjct: 24 LELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAG 83
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+F+ +GGGD+KL G +F F V I + +LT R
Sbjct: 84 FLFLAVIAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGR-- 141
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ +P+ AI+ G +++Y + ++
Sbjct: 142 --------------LAKRQPLPFAPAIAAGSILAYLYGDSIISFYIKMA 176
>gi|221310747|ref|ZP_03592594.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. 168]
gi|221315072|ref|ZP_03596877.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221319991|ref|ZP_03601285.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. JH642]
gi|221324273|ref|ZP_03605567.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. SMY]
Length = 178
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ ++ L+ A++D+ +IPNR+ I L + +D L
Sbjct: 24 LELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAG 83
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+F+ +GGGD+KL G +F F V I + +LT R
Sbjct: 84 FLFLAVIAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGR-- 141
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ +P+ AI+ G +++Y + ++
Sbjct: 142 --------------LAKRQPLPFAPAIAAGSILAYLYGDSIISFYIKMA 176
>gi|228938520|ref|ZP_04101128.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971399|ref|ZP_04132025.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978012|ref|ZP_04138391.1| Peptidase A24A domain protein [Bacillus thuringiensis Bt407]
gi|228781673|gb|EEM29872.1| Peptidase A24A domain protein [Bacillus thuringiensis Bt407]
gi|228788266|gb|EEM36219.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821118|gb|EEM67135.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 249
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ V I+ R +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGVGIVLKR----------------IEV 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ IP+G IS+G + +Y
Sbjct: 226 RKPIPFGPFISLGAICYVLAAY 247
>gi|296134300|ref|YP_003641547.1| peptidase A24A prepilin type IV [Thermincola sp. JR]
gi|296032878|gb|ADG83646.1| peptidase A24A prepilin type IV [Thermincola potens JR]
Length = 176
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 52/164 (31%), Gaps = 16/164 (9%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
LI L +DL I N+ + LL + + L + +
Sbjct: 11 LILVLLLTVCLYTDLKERKIYNKFVFPAIVFGLLYFTYIKGG-SGLIFSLKGFGLGIALL 69
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F FA G GDVKLL + G F +F+ G I F++ +
Sbjct: 70 FIPFALGGFGAGDVKLLGAVGALKGPAFVFAAFVLTALAGGLIALGFLICQGRFFITLKR 129
Query: 133 FGMFVPKSFLMK---------------NKIPYGIAISMGGLISY 161
+ + + PYGIAI G + +Y
Sbjct: 130 IVISLYILVGTRFKINSLNSLEKAEYHRAFPYGIAIVAGTVAAY 173
>gi|323499924|ref|ZP_08104883.1| hypothetical protein VISI1226_15791 [Vibrio sinaloensis DSM 21326]
gi|323315165|gb|EGA68217.1| hypothetical protein VISI1226_15791 [Vibrio sinaloensis DSM 21326]
Length = 168
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 3/133 (2%)
Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
F L+ A+SD IPN + I+ L + + L+ G +F
Sbjct: 7 FVLLMIAVSDAREHRIPNVLLILTLVLCVAKMLVQPTLSPSFTEALMGGGAMFFGALVLH 66
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSF---LSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+M GDVKLL W GW L ++G + ++ + + +
Sbjct: 67 LLRVMAPGDVKLLGVVGFWLGWGHLMDISLWIAVASILVGSVYALIKAAGKEESVKHQLE 126
Query: 134 GMFVPKSFLMKNK 146
+ ++
Sbjct: 127 RYKMLFAYGRTAP 139
>gi|306820487|ref|ZP_07454121.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Eubacterium yurii subsp. margaretiae ATCC 43715]
gi|304551473|gb|EFM39430.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Eubacterium yurii subsp. margaretiae ATCC 43715]
Length = 261
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 20/164 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVS-IVMLGSFLLTAFLLGMDYELIAL 60
K S + + I LV D + I + V I + ++ D L
Sbjct: 95 KYSISLEFLLMCIFFSMLVIVGFIDWDTFYIYDDVLKIFAVLLGVVLIISKKTDIVPNIL 154
Query: 61 HLLVGLIVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
++G ++ + F G GD+ L + G ++ +F + +
Sbjct: 155 GAVIGAAIYAAIYFLSKIVFKQEAFGQGDIYLNAVIGLVIGSPYIAITSIFSFFVGLFFI 214
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+F + R F M+ +IP+G + + +I
Sbjct: 215 IIFRILGRK---------------FEMRQEIPFGPYMCISAVII 243
>gi|170703399|ref|ZP_02894176.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
gi|170131688|gb|EDT00239.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
Length = 159
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 7/151 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V L LV A+ DL + NR + +L+ A L+ A H+ +
Sbjct: 4 LVQLTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLVAAALVREGLASFAGHVATAAAML 63
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ +GGGDVKL + +W G + A I V
Sbjct: 64 VVFGGMRHAGWLGGGDVKLAAAVFLWAGPPLALPVLTIVGASGAACGLAMIAAVARQRRV 123
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
P M +PYG+A++ GG ++
Sbjct: 124 APAHPM-------ATRGVPYGVALAFGGALA 147
>gi|324325422|gb|ADY20682.1| late competence protein comC [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 240
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
++D +IPNR+ LL + ++ ++FI+ +C +
Sbjct: 113 VTDYIYMLIPNRILAWFAC--LLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGL 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
GGGD+KLL+ G F+ ++ R
Sbjct: 171 GGGDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKR----------------M 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSY 165
M+ +IP+G IS+G + +Y
Sbjct: 215 KMRTQIPFGPFISLGAICYMLVTY 238
>gi|296105030|ref|YP_003615176.1| leader peptidase HopD [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295059489|gb|ADF64227.1| leader peptidase HopD [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 157
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 19/160 (11%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLV 64
+ LI D+ S ++P++ +L + LL L D+ + +
Sbjct: 2 LTLLPFLLIYFVLSGLLVREDIRSGILPDKYLCPLLWAGLLYQLCLHPDFLPGAVVGAMA 61
Query: 65 GLIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
G + F + + F MG GDVK L++ W GW +
Sbjct: 62 GYVGFAMIYWGYRLIFRREGMGYGDVKYLSALGAWHGWCVLPEL--------------AL 107
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + ++ + +F P +KN +P+G ++ GL
Sbjct: 108 VAALLALLYLLMTSLFNPARRTLKNPLPFGPFLAAAGLCV 147
>gi|94497252|ref|ZP_01303824.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58]
gi|94423357|gb|EAT08386.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58]
Length = 157
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
A+ + L+ AA++D+ S +I NR+++ + L G+D + +A LL+G
Sbjct: 7 QWALMIALCALLIAAAITDMRSRIISNRLNMTVALLAPLWWLACGLDVWPGMATQLLLGA 66
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
IVF++ FA +MGGGDVKLL + A+WF W + + G + V ++ R+
Sbjct: 67 IVFVLFAALFALGMMGGGDVKLLGALALWFPWQVLMALVMLMAVLGGAVTLVVLIHHRIA 126
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+IPYG+AIS+ L + YL + A
Sbjct: 127 KKAGQP-------------EIPYGVAISLAALWVIGERYLNQFA 157
>gi|187923642|ref|YP_001895284.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN]
gi|187714836|gb|ACD16060.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN]
Length = 166
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 2/153 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL-HLLV 64
M S + A+ D I N V + L + A + + +
Sbjct: 1 MNVSVGIFLFIAWAAVVAIGDCRRRRISNSVVLAGLAAAFCCALFQCGPFGISLTQSGIG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI FFA +MG DVK+ W G + L ++ + ++++L
Sbjct: 61 ALIGLAALLPFFALGVMGAADVKVFAVLGAWCGM-HALLGLWMAASLAASVHALWLLITT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
K PY +++
Sbjct: 120 RTRLASLARQPGATFELAGKASTPYAACLAVAA 152
>gi|256785954|ref|ZP_05524385.1| type IV peptidase [Streptomyces lividans TK24]
gi|289769846|ref|ZP_06529224.1| type IV peptidase [Streptomyces lividans TK24]
gi|289700045|gb|EFD67474.1| type IV peptidase [Streptomyces lividans TK24]
Length = 259
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 22/159 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-----LHL 62
+AV+L+ V A+ DL +P+ +++ + G+ L+ L + E L
Sbjct: 107 EAAVWLLLAPVGVLLAVVDLKVRRLPDPLTLPLAGAALVLLGLTALVPEHAGEWTTALLG 166
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ L + MG GDVKL + GW L F +LG + +
Sbjct: 167 ALALGAGYLVLFLINPAGMGFGDVKLALTAGAVLGWYGWPSLMLGTFAGFLLGALYGGAL 226
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L R K IP+G + G +
Sbjct: 227 LVARRA---------------DRKTAIPFGPFLIAGAFL 250
>gi|254506804|ref|ZP_05118944.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
parahaemolyticus 16]
gi|219550385|gb|EED27370.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
parahaemolyticus 16]
Length = 168
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 3/135 (2%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ F L A+SD IPN + ++ L + + + + ++F
Sbjct: 4 VIWFILFIVAVSDAKEHRIPNALLLLTLIACVARMIVEPDLTPSWSAAATGFAVMFAGSL 63
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSF---LSFLFFVAILGGILSVFILTVRMITNHI 130
+M GDVKLL W GW F L ++G ++ + +
Sbjct: 64 MLHLLRVMAPGDVKLLAVIGFWLGWGQLFDATLWIAATSIMVGLTYALVRVAGKEHKMRE 123
Query: 131 PIFGMFVPKSFLMKN 145
+ + ++
Sbjct: 124 QLSRYKLLFAYGRAG 138
>gi|229102004|ref|ZP_04232717.1| Peptidase A24A domain protein [Bacillus cereus Rock3-28]
gi|228681391|gb|EEL35555.1| Peptidase A24A domain protein [Bacillus cereus Rock3-28]
Length = 249
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 20/137 (14%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
++D +IP+R+ I FLL + + ++ ++ + +C +
Sbjct: 122 VTDYIYMLIPDRILISFA--FLLILECIFVPLVTWIDSIVGSGVILFLLYCMQKIYPEGL 179
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
GGGD+KLL+ G F+ + IL R
Sbjct: 180 GGGDIKLLSLLGFIVGLKGVFIILFLASYFSLCFFGMGILLKR----------------I 223
Query: 142 LMKNKIPYGIAISMGGL 158
IP+G IS+G +
Sbjct: 224 EASKPIPFGPFISLGAI 240
>gi|10955495|ref|NP_065347.1| prepilin peptidase PilU [Escherichia coli]
gi|261226377|ref|ZP_05940658.1| prepilin peptidase PilU [Escherichia coli O157:H7 str. FRIK2000]
gi|301646358|ref|ZP_07246245.1| peptidase, A24 family protein [Escherichia coli MS 146-1]
gi|48992|emb|CAA44098.1| pilU [Escherichia coli]
gi|9971689|dbj|BAB12640.1| pilU [Escherichia coli]
gi|301075425|gb|EFK90231.1| peptidase, A24 family protein [Escherichia coli MS 146-1]
gi|326344467|gb|EGD68220.1| prepilin peptidase [Escherichia coli O157:H7 str. 1125]
Length = 211
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 21/163 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ + ++ S + ++ L A DL S ++P ++ + S LL +
Sbjct: 59 LNQLSLIQSIIVIVFYAFLTLMACIDLLSFLLPRLYTVTFIFSGLLYQTWNNNILSGLFC 118
Query: 61 HLLVGLIVFIICFCFFAFNI---MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+L+ I+ + F N G GDV L+ T VWF S +F I G I
Sbjct: 119 AMLMFFIMLFVRLYFAYKNGTESFGMGDVLLIAGTGVWFPTPEIACSIVFIAVIGGIIF- 177
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K IP+G + G +
Sbjct: 178 -----------------FTLGGLNKQKKYIPFGPFLCGGMFVY 203
>gi|324989610|gb|EGC21555.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK353]
Length = 270
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWELLLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + + +
Sbjct: 187 YFGANAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATIFNKFK-- 244
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F +K ++P+G A+S+ +I Y
Sbjct: 245 ------------FKLKEEVPFGPAMSIMAVILYFWG 268
>gi|317131776|ref|YP_004091090.1| Prepilin peptidase [Ethanoligenens harbinense YUAN-3]
gi|315469755|gb|ADU26359.1| Prepilin peptidase [Ethanoligenens harbinense YUAN-3]
Length = 252
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 16/172 (9%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
+ +AV+ LV A D ++IPN + + +L + F + +
Sbjct: 94 YGLTLSAAVYAAFICALVVTAFIDYDQSIIPNGIVLYILAVGVPAIFFTQGTGLIDRVIG 153
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
V ++ F +G GDVKL+ + GW LS + + +L
Sbjct: 154 FFAASVPLLIAYFVTRGGLGLGDVKLMAAGGFLLGWKLILLSLAVGSIVGAVVGVSLVLR 213
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R M++ +P+G +S+G S A +GL
Sbjct: 214 GRK----------------SMRSAVPFGPFLSLGMCFSALYGNAALHAYIGL 249
>gi|229189487|ref|ZP_04316503.1| Peptidase A24A domain protein [Bacillus cereus ATCC 10876]
gi|228593932|gb|EEK51735.1| Peptidase A24A domain protein [Bacillus cereus ATCC 10876]
Length = 249
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 122 VTDYLYMLIPDCILISFAFLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I R +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR----------------IEV 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ IP+G IS+G + +Y
Sbjct: 226 RKPIPFGPFISLGAICYVLAAY 247
>gi|330819169|ref|YP_004348031.1| Prepilin peptidase [Burkholderia gladioli BSR3]
gi|327371164|gb|AEA62519.1| Prepilin peptidase [Burkholderia gladioli BSR3]
Length = 244
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 21/155 (13%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIIC 72
+ CL A DL ++P+ +++ +L + L + + LVG ++
Sbjct: 97 LLGACLATAGTIDLEHHLLPDAITLPLLWAGLALNLVEVFAPLPDAVVGALVGYLLPWTL 156
Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F MG GD KLL + W GW + + ++ G I+++ ++
Sbjct: 157 GQLFRLLRGLEGMGYGDFKLLAALGAWLGWE-AVPWIIAISSVAGAIVAIALIASGCKKA 215
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
P IP+G I+ +
Sbjct: 216 AEP---------------IPFGPFIAFAAIAVIYW 235
>gi|289578262|ref|YP_003476889.1| peptidase A24A domain protein [Thermoanaerobacter italicus Ab9]
gi|289527975|gb|ADD02327.1| peptidase A24A domain protein [Thermoanaerobacter italicus Ab9]
Length = 252
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ L+ + D+ ++PN++ +V ++ L+ + + L+
Sbjct: 100 AFSYMFIAAILITVSFIDIDYKIVPNKIILVGFIGGIIFRILMYNYGLIDYIVGLILGGG 159
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ + +GGGD+KL+ + GW + L LF I+G + V ++ +++
Sbjct: 160 ILLLISLISGGEIGGGDIKLMALIGFFIGWKLTIL-VLFLSVIIGALGGVILVALKIKGG 218
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
K+ IP+ IS+ IS Y
Sbjct: 219 ---------------KDYIPFVPYISIAWFISILYGY 240
>gi|167740291|ref|ZP_02413065.1| Bacterial Peptidase A24 N-terminal domain family protein
[Burkholderia pseudomallei 14]
Length = 203
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 21/171 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGL 66
+ L+ + D+ + +P+ +++ +L + L + + G
Sbjct: 49 AALAAFGLCAALLAMSAIDMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGY 108
Query: 67 IVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F +G GD+KLL + W GW L
Sbjct: 109 LFLWCILWLFKLLRGIEGIGYGDLKLLAALGAWLGWEALPQVVLIA-------------- 154
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + +P+G ++ GG + F + L G
Sbjct: 155 --AVAGAAVGLVATWRGRMRFEEPLPFGPFLAAGGAATLFFGTPFYLLLGG 203
>gi|163854837|ref|YP_001629135.1| prepilin signal peptidase [Bordetella petrii DSM 12804]
gi|163258565|emb|CAP40864.1| prepilin signal peptidase [Bordetella petrii]
Length = 282
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 21/152 (13%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF---- 78
DL ++++P+ +++ + + LL + L L +VG + + F F
Sbjct: 147 WIDLQTSLLPDAITLPLAWAGLLVNLGGALAPLPLAVLGAVVGYVFLWLLFHMFRLLTGR 206
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
MG GD KLL + WFG L + LT
Sbjct: 207 EGMGYGDFKLLAALGAWFGLAALPGLLLVASLAGVAGAGILRLTGH-------------- 252
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+P+G +++ G++ +
Sbjct: 253 --ARRGQPLPFGPYLALAGMVMLLAAGGAAWF 282
>gi|162146305|ref|YP_001600764.1| prepilin peptidase and N-methyltransferase O [Gluconacetobacter
diazotrophicus PAl 5]
gi|209543692|ref|YP_002275921.1| peptidase A24A domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|14278717|gb|AAK58497.1| prepilin peptidase and N-methyltransferase O [Gluconacetobacter
diazotrophicus]
gi|161784880|emb|CAP54423.1| putative prepilin peptidase and N-methyltransferase O
[Gluconacetobacter diazotrophicus PAl 5]
gi|209531369|gb|ACI51306.1| peptidase A24A domain protein [Gluconacetobacter diazotrophicus PAl
5]
Length = 261
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 22/156 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
+ + L+ A DL S +P+ +++ ++ + L A L G AL G VF
Sbjct: 111 CLFGWWLLVLAAIDLKSFRLPDTLTVPLIAAGLGLAALGGAAPVLWHALAAAAGYGVFRG 170
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + +GGGD KLL + W G + +++
Sbjct: 171 ISLLYRRARGHDGLGGGDAKLLAAGGAWLGPESLPHVVFLGAVLTLCAVAIA-------- 222
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+P+G +++ +
Sbjct: 223 ---------RRGDVNRTLMVPFGPGLALAMWGIWLW 249
>gi|302382601|ref|YP_003818424.1| prepilin peptidase [Brevundimonas subvibrioides ATCC 15264]
gi|302193229|gb|ADL00801.1| Prepilin peptidase [Brevundimonas subvibrioides ATCC 15264]
Length = 253
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 20/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVG 65
+ + + L+ AL D + +P+ +++ ++ + L+ A ++ + + G
Sbjct: 102 IMVVATAVLGWQLLLIALIDAENFWLPDELTLPLIVTGLIAAAVIAQGWPVASLIGAAFG 161
Query: 66 LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + +GGGD L W GW L+ A ++ ++
Sbjct: 162 FGSLWALAALYRLVRKRDGLGGGDPILFAGAGAWVGWMGLPSVLLWACAAGFSVVLTLLI 221
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
T R S +++P+G +++G +++
Sbjct: 222 TRR---------------SVSGGDRLPFGTFLAIGVWLTWLYGP 250
>gi|206967697|ref|ZP_03228653.1| late competence protein comC [Bacillus cereus AH1134]
gi|206736617|gb|EDZ53764.1| late competence protein comC [Bacillus cereus AH1134]
Length = 240
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 113 VTDYLYMLIPDCILISFAFLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 172
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I R +
Sbjct: 173 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR----------------IEV 216
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ IP+G IS+G + +Y
Sbjct: 217 RKPIPFGPFISLGAICYVLAAY 238
>gi|291523560|emb|CBK81853.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family
A24A [Coprococcus catus GD/7]
Length = 254
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 44/112 (39%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S V + L+ ++ D + IP ++I + + + L + +
Sbjct: 102 LSSGVMCLMTSALIVLSVIDWRTYEIPVAINIFLGILGVASVILELDAVLAHLMGAVCVS 161
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+ ++ + +GGGD+KL+ + + GW L+F I I +
Sbjct: 162 GILLVIYLLSGGRAIGGGDIKLMAACGLILGWQLIILAFFLGCIIGSVIHLI 213
>gi|281417259|ref|ZP_06248279.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20]
gi|281408661|gb|EFB38919.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20]
Length = 175
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
++ A +SD+ I N+++ + ++T +L + LL ++ F++
Sbjct: 9 AVLVLIALVSDIRHYKIRNKLTFSFMFIGIVTNLVLD-GVRGLLDSLLGIIVPFLLLIVL 67
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+A ++G GDVKL ++ G + + + + GG++++ IL +
Sbjct: 68 YALRMLGAGDVKLFSAIGAVLGVRAALW-IMAYSFLAGGVIALIILIINRNGKERL 122
>gi|157961831|ref|YP_001501865.1| peptidase A24A prepilin type IV [Shewanella pealeana ATCC 700345]
gi|157846831|gb|ABV87330.1| peptidase A24A prepilin type IV [Shewanella pealeana ATCC 700345]
Length = 188
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 54/169 (31%), Gaps = 12/169 (7%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
V A DL IPN + ++ + L + L + + FII F F
Sbjct: 16 FFVLAITFDLVREKIPNWLCLIAIFCGFLINSYFAQ-LNGLMLSFIGFSLAFIILFPTFM 74
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSF-----------LFFVAILGGILSVFILTVRMI 126
F I+G GD+KL+ G S L V G+ F R
Sbjct: 75 FKILGAGDIKLMMGIGALIGPQLLVWSIAYAIIAGAITSLLLVIWKSGLSGCFKTVRRYW 134
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ ++PY A+++G L + + +S
Sbjct: 135 DCFYLRTYFKPEEGEAAGQRVPYAPALAIGWLWACSLNPDITYLYSTIS 183
>gi|131603|sp|P15754|LEP4_KLEPN RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; AltName: Full=Pullulanase
secretion protein pulO; Includes: RecName: Full=Leader
peptidase; AltName: Full=Prepilin peptidase; Includes:
RecName: Full=N-methyltransferase
gi|43922|emb|CAA36700.1| pulQ [Klebsiella pneumoniae]
gi|149314|gb|AAA25137.1| pulO [Klebsiella pneumoniae]
Length = 228
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFCFFAF--- 78
A D + ++P+ +++ ++ + LL + + + G + + F
Sbjct: 134 AAIDAQTQLLPDGLTLPLMWAGLLFNLSATYVPLAEAVVGAMAGYLSLWSVYWVFRLLSG 193
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
+G GD KLL + W GW + L
Sbjct: 194 KEALGYGDFKLLAALGAWLGWQALPQTLLLAS 225
>gi|134281870|ref|ZP_01768577.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
gi|134246932|gb|EBA47019.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
Length = 179
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 52/169 (30%), Gaps = 14/169 (8%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L V AA DL S IPNR+ + L L+ L + A L
Sbjct: 10 IPLCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAG 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM----- 125
+ F+ M GDVKL+ + W G T + L + G +
Sbjct: 70 LLLPFYLVRGMAAGDVKLMLAIGAWVGPTLALHIALATFVVGGAWALAVVARRGRFRKLL 129
Query: 126 ---------ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+PYG+AI++G L +
Sbjct: 130 ANLRHLFAGAALPRVASAARAAPEIDSVGMLPYGVAIAIGTLGVLFAAA 178
>gi|52144030|ref|YP_082798.1| late competence protein (includes: leader peptidase;
N-methyltransferase) [Bacillus cereus E33L]
gi|51977499|gb|AAU19049.1| late competence protein (includes: leader peptidase;
N-methyltransferase) [Bacillus cereus E33L]
Length = 240
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 16/135 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 113 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 172
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KL + G F+ V ++ R M
Sbjct: 173 GDIKLFSLLGFIVGLKGIFMILFLSSFFSLCFFGVGLVLKR----------------MKM 216
Query: 144 KNKIPYGIAISMGGL 158
+ +IP+G IS+G +
Sbjct: 217 RTQIPFGPFISLGAI 231
>gi|170701160|ref|ZP_02892133.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
gi|170133941|gb|EDT02296.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
Length = 180
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V L + AA +D+ S IPNR+ + L L+ L L F
Sbjct: 11 VPLCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGAATGFG 70
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F+ M GDVKL+ + W G +F + ++GGI ++ +R +
Sbjct: 71 LLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFY-IVLATFLVGGIGAIGFALLRGRMRQM 129
Query: 131 PIFGMFVPKSFLMK---------------NKIPYGIAISMGGL 158
+ +PYG+AI+ G L
Sbjct: 130 CANVWALIAHRSTGAYAGATDGPVEVASVGALPYGVAIAAGTL 172
>gi|108758056|ref|YP_631308.1| Type IV leader peptidase family protein [Myxococcus xanthus DK
1622]
gi|108461936|gb|ABF87121.1| Type IV leader peptidase family protein [Myxococcus xanthus DK
1622]
Length = 179
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 14/168 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL---GMDYELIALHLL 63
V A++ + LV + ++D+ I + V+ ++ L G + ++
Sbjct: 5 VQIALWTVLGVALVISVVTDVLRREILDAVTYPLMAVGLGVRLATEGVGDLEHGLISGVV 64
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
G+ + ++ MG GDVKL+ G+ + F ++G + +V L
Sbjct: 65 SGVGLALMLLSAALRGRMGWGDVKLMGGVGAVLGFPAVLAAAAFIS-LVGALQAVVTLLW 123
Query: 124 RMITNHIPIFGMFVPKSFLM----------KNKIPYGIAISMGGLISY 161
+ + ++ + IPYG+AI++G + +
Sbjct: 124 QGAVWDTLAAVVRRWAVWVRLASADAQPAPQRHIPYGVAIALGTVWAL 171
>gi|134291860|ref|YP_001115629.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
gi|134135049|gb|ABO59374.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
Length = 179
Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V L ++ AA +DL S IPNR+ + L L+ L + L
Sbjct: 10 VPLCVTLLVIVAASTDLASRRIPNRLVVAGLAGALVAQCALHGVPAGVLAWLAGAATGLG 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH- 129
+ F+ M GDVKL+ + W G +F + + GGI ++ +R
Sbjct: 70 LLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFY-IVLATFVAGGIGALGFALLRGRMRRM 128
Query: 130 --------------IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
P +PYG+AI++G L S
Sbjct: 129 WTNVWMLVAHRAAAPLAGATDGPVESASVGALPYGVAIAVGTLGMLFAS 177
>gi|49479782|ref|YP_035532.1| late competence protein (includes: leader peptidase;
N-methyltransferase) [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49331338|gb|AAT61984.1| late competence protein (includes: leader peptidase;
N-methyltransferase) [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 240
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 113 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 172
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + R+ M
Sbjct: 173 GDIKLLSLLGFIAGLKGVFMILFLSSFFSLCFFGAGLALKRIK----------------M 216
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 217 RTQIPFGPFISLGAICYMLVTY 238
>gi|229090358|ref|ZP_04221601.1| Peptidase A24A domain protein [Bacillus cereus Rock3-42]
gi|228692941|gb|EEL46659.1| Peptidase A24A domain protein [Bacillus cereus Rock3-42]
Length = 249
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + +GG
Sbjct: 122 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYYMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + R+ M
Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLSSFFSLCFFGAGLALKRIK----------------M 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 226 RTQIPFGPFISLGAICYMLFTY 247
>gi|308068039|ref|YP_003869644.1| type II secretory pathway, prepilin signal peptidase PulO
[Paenibacillus polymyxa E681]
gi|305857318|gb|ADM69106.1| Type II secretory pathway, prepilin signal peptidase PulO
[Paenibacillus polymyxa E681]
Length = 170
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+++ L A ++DL S IPN++++ + L+ L G ++ + F
Sbjct: 5 YIVCGVLLAIALVTDLRSMKIPNKLTLPGIVVGLVFNTLFG-GWDGFLFAVAGLGTGFGF 63
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+ +G GDVKL W G ++ S L+ + G I +L R +
Sbjct: 64 MLILYWMGAVGAGDVKLFGLIGAWTGAAFAWQSALYSIFFAGIIGIGILLWKRETIMRLR 123
Query: 132 IFGMFVPKSFLMKNK 146
+ FL ++
Sbjct: 124 RVAFNLGGFFLFRSG 138
>gi|238027565|ref|YP_002911796.1| peptidase A24A, prepilin type IV [Burkholderia glumae BGR1]
gi|237876759|gb|ACR29092.1| Peptidase A24A, prepilin type IV [Burkholderia glumae BGR1]
Length = 166
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 2/145 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLV 64
M+ + + A D+ IPN + + L +++ + ++
Sbjct: 1 MILILSVAVFLAWVTMVAAGDIRYRRIPNSLVVAGLICGMVSTISRYNPFGITPVEAVIG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+I F+ F FFA +MG DVK+ T +W G+ ++ I + ++
Sbjct: 61 AVIGFVGLFPFFACRLMGAADVKVFTVLGLWCGFQG-LFWCWIAASLAALIHVLGMMYWT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
+ + PY
Sbjct: 120 RTPIGALWQRGSPTLALGARRGSPY 144
>gi|304314578|ref|YP_003849725.1| hypothetical protein MTBMA_c08170 [Methanothermobacter marburgensis
str. Marburg]
gi|302588037|gb|ADL58412.1| conserved hypothetical protein [Methanothermobacter marburgensis
str. Marburg]
Length = 382
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLL 63
+ I +A+ SD+ +IPNR++ ++G L L D + ++
Sbjct: 3 MELISVFIALIVCFYASYSDIKRGLIPNRLTFPVIGLGLAFNALRAYTEADPWIFIYTVI 62
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
+F + + + GGDVKL T+ + PS + +
Sbjct: 63 FTAGIFALGYILWRMGAWAGGDVKLFTAITALLPFQPSIVDYTIGGVAF 111
>gi|115358169|ref|YP_775307.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
gi|115283457|gb|ABI88973.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
Length = 159
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 7/151 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V L LV A+ DL + NR + +L+ A L+ A H+ +
Sbjct: 4 LVQLTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLIAAALVREGLAPFAGHVATAAAML 63
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ +GGGDVKL + +W G + A + +
Sbjct: 64 VVFGALRHAGWLGGGDVKLAAAVFLWAGPPLALPVLTIVGASGAACGLAMLAGLARQRRV 123
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
P M +PYG+A++ GG ++
Sbjct: 124 APAHPM-------ATRGVPYGVALAFGGALA 147
>gi|229149606|ref|ZP_04277837.1| Peptidase A24A domain protein [Bacillus cereus m1550]
gi|228633816|gb|EEK90414.1| Peptidase A24A domain protein [Bacillus cereus m1550]
Length = 249
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D F +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 122 VTDYFYMLIPDCILISFAVLLILESIFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I+ R +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIVLKR----------------IEV 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
IP+G IS+G + +Y
Sbjct: 226 GKPIPFGPFISLGAMCYVLAAY 247
>gi|229095891|ref|ZP_04226869.1| Peptidase A24A domain protein [Bacillus cereus Rock3-29]
gi|229114843|ref|ZP_04244256.1| Peptidase A24A domain protein [Bacillus cereus Rock1-3]
gi|228668535|gb|EEL23964.1| Peptidase A24A domain protein [Bacillus cereus Rock1-3]
gi|228687515|gb|EEL41415.1| Peptidase A24A domain protein [Bacillus cereus Rock3-29]
Length = 249
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 20/137 (14%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
++D +IP+R+ I FLL + + ++ ++ + +C +
Sbjct: 122 VTDYIYMLIPDRILISFA--FLLILECIFVPLVTWIDSIVGSGVILFLLYCMQKIYPEGL 179
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
GGGD+KLL+ G F+ + IL R
Sbjct: 180 GGGDIKLLSLLGFIVGLKGVFIILFLASYCSLCFFGMGILLKR----------------I 223
Query: 142 LMKNKIPYGIAISMGGL 158
IP+G IS+G +
Sbjct: 224 EASKPIPFGPFISLGAI 240
>gi|94968619|ref|YP_590667.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Candidatus Koribacter versatilis Ellin345]
gi|94550669|gb|ABF40593.1| type 4 prepilin peptidase 1 [Candidatus Koribacter versatilis
Ellin345]
Length = 329
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 39/195 (20%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------------------ 53
+ I + L+ +D + ++P+++++ L L+ + L+ M
Sbjct: 127 YAILAYLLLGLIFTDAETQLLPDKMTLPGLVIGLIFSVLVPMQDLVVMLFLEFVPFPIPH 186
Query: 54 -------DYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSF 102
+VG + MG GDVKL+ + G +
Sbjct: 187 GHQVLWISVISSVTGAIVGGGFIWGVGALWKLARGYEGMGFGDVKLMAMVGAYLGAATTL 246
Query: 103 LSFLFFVAILG--GILSVFILTVRMITNHIPIFGMFVPKSFLMKN--------KIPYGIA 152
+ + G+ ++ I+ ++ ++ G S K +P+G++
Sbjct: 247 IVIFTASIMGSVIGLATIGIVYLQRRGRYVKKLGPAQGASRARKAAFVAYRYLPMPFGVS 306
Query: 153 ISMGGLISYPDSYLF 167
+ L++ S
Sbjct: 307 LGAMALVAVYFSRYI 321
>gi|238897569|ref|YP_002923248.1| PilD type IV pilus leader peptidase [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465326|gb|ACQ67100.1| PilD type IV pilus leader peptidase [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 280
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 27/165 (16%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSI--VMLGSFLLTAFLLGMDYELIALHLLVGL 66
S + L+ +L D+ +PN ++ + LG + ++ +++G
Sbjct: 130 SMAIMGCSVLLIILSLIDVDHLWLPNSLNYALLWLGLLVALLGYSPLNLSQAVSGVMIGY 189
Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ F F +G GD L + W G L +
Sbjct: 190 FALWSLYWGFKFLSGREGLGSGDFLLFGALGAWVGVQNLIYVALISSFSGILFTLL---- 245
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
S K+KIP+GI +++GG
Sbjct: 246 -----------------SGRTKDKIPFGIWLALGGWSVLLFPGFM 273
>gi|206559891|ref|YP_002230655.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
J2315]
gi|198035932|emb|CAR51824.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
J2315]
Length = 164
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 2/158 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + V AL D+ IPN + I S + A + L+
Sbjct: 1 MILLTGVGVFLAWAVLVALEDIRHRRIPNSLVIGGFVSAFVLAGHNPFGI-SVNQALIGA 59
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L+ F+ F FF +MG DVK+ W G ++ + + R
Sbjct: 60 LVGFLSLFPFFVLRVMGAADVKVFAVLGAWCGPYALLWLWIIASLLAFAHAGTLVFATRT 119
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ + + + PY + + +
Sbjct: 120 PVSALWQRRSPTMQIAGFRAS-PYAAFLVIPAALWCLY 156
>gi|302559118|ref|ZP_07311460.1| type IV peptidase [Streptomyces griseoflavus Tu4000]
gi|302476736|gb|EFL39829.1| type IV peptidase [Streptomyces griseoflavus Tu4000]
Length = 246
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 40/143 (27%), Gaps = 22/143 (15%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----LLVGLIVFIICFCFFA 77
A+ D +P+ +++ G+ L L + E + L
Sbjct: 109 AVVDFRVQRLPDPLTLPFAGAALALLGLAALVPEHAGEWTTALLGALALGAGYFVLFLIN 168
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTVRMITNHIPIFGM 135
MG GDVKL GW L + G + ++ R
Sbjct: 169 PGGMGFGDVKLALGAGAVLGWYGWPAVMLGTLAGFVFGAVYGGALVVARRAG-------- 220
Query: 136 FVPKSFLMKNKIPYGIAISMGGL 158
K IP+G + G
Sbjct: 221 -------RKTAIPFGPFLIGGAF 236
>gi|238916730|ref|YP_002930247.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Eubacterium eligens ATCC 27750]
gi|238872090|gb|ACR71800.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Eubacterium eligens ATCC 27750]
Length = 256
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 4/116 (3%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL----LV 64
S + + ++ D + IP +++ + ++ L + +
Sbjct: 102 SILMCFAFSIFLVISVIDWRTFEIPFSLNVAIGVLGVIRIILDHKNLLDYLIGFCVISGF 161
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ I + GGGD+KL+ ++ GW L+FL + I S+ +
Sbjct: 162 MLVCLFIGRAIKDIDAFGGGDIKLMAFAGLFLGWKCIILAFLIGCILGAVIHSIRM 217
>gi|229108860|ref|ZP_04238465.1| Peptidase A24A domain protein [Bacillus cereus Rock1-15]
gi|228674629|gb|EEL29868.1| Peptidase A24A domain protein [Bacillus cereus Rock1-15]
Length = 249
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 16/135 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I R +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR----------------IEV 225
Query: 144 KNKIPYGIAISMGGL 158
+ IP+G IS+G +
Sbjct: 226 RKPIPFGPFISLGAM 240
>gi|266619396|ref|ZP_06112331.1| prepilin peptidase [Clostridium hathewayi DSM 13479]
gi|288869072|gb|EFD01371.1| prepilin peptidase [Clostridium hathewayi DSM 13479]
Length = 190
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 16/167 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + + L A +D + IP+R++ +L +L+ +
Sbjct: 37 LRAVMIWLVCLILTAIAYTDFKTMHIPDRMTAALLIPAVLSLGAESGISLFSRALGGAAV 96
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ GGGD+KL+ + GW + + GG ++++L R
Sbjct: 97 SFPMFLMTLAVPGSFGGGDIKLMAVCGLILGWPRVAAAGFL-SVVTGGCYAIWLLATRRA 155
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +G +++G ++S +G
Sbjct: 156 G---------------RSDHFAFGPFLAVGVVLSLLYGDQLLAWYLG 187
>gi|107022591|ref|YP_620918.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
gi|116689540|ref|YP_835163.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
gi|170732844|ref|YP_001764791.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
gi|105892780|gb|ABF75945.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
gi|116647629|gb|ABK08270.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
gi|169816086|gb|ACA90669.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
Length = 164
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 2/158 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + V AL D+ IPN + I S + A + L+
Sbjct: 1 MILLTGVGVFLAWAVLVALEDIRHRRIPNSLVIGGFVSAFVLAGHSPFGI-SVNQALIGV 59
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
LI F+ F FF +MG DVK+ W G ++ + + R
Sbjct: 60 LIGFLSLFPFFVLRVMGAADVKVFAVLGAWCGPHALLWLWIIASLLAFAHAGTLVFATRT 119
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ + + + PY + + +
Sbjct: 120 PVSALWQRRSPTMQIAGFRAS-PYAAFLVIPAALWCLY 156
>gi|304438510|ref|ZP_07398450.1| possible type II secretory pathway, prepilin signal peptidase PulO
and peptidase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368593|gb|EFM22278.1| possible type II secretory pathway, prepilin signal peptidase PulO
and peptidase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 186
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 19/162 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L++ + DL M+ + +++ L+ + G+D AL V C
Sbjct: 43 VLFTAVLLWLSYLDLRDGMLYDCITMPFAVLGLMVS---GVDSISDALLGGTLCGVLFYC 99
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
A +GGGDVKL +W GW + ++ + G + +LT R
Sbjct: 100 LYIAARGGLGGGDVKLAAGLGLWLGWEAAIVAVWTAFLLGGAAAAFLLLTGRK------- 152
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G +++GG + + GL
Sbjct: 153 ---------SRHDGIPFGPFLAVGGYVGFLVGRQLWQLYWGL 185
>gi|238917901|ref|YP_002931418.1| hypothetical protein EUBELI_01988 [Eubacterium eligens ATCC 27750]
gi|238873261|gb|ACR72971.1| Hypothetical protein EUBELI_01988 [Eubacterium eligens ATCC 27750]
Length = 156
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 7/156 (4%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M I +V+A D+ + IPNR+ I + ++ + G E I H+
Sbjct: 1 MTDVISAGIALILIVWAVSEDVKAFRIPNRLIIAGYIAGVIMLVIRGFSGEHIGNHITGT 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L+ F+ +G GDVKL + G L + GGI V L ++
Sbjct: 61 LVGLSEMLIFYIIKAVGAGDVKLFAVLGLLLG-KTLITQLLIVSLVTGGITGVVELCIKK 119
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
S + + Y +AI M ++ +
Sbjct: 120 TGRVELGM------SHVQMHGFHYAVAILMAYVVVF 149
>gi|229126720|ref|ZP_04255732.1| Peptidase A24A domain protein [Bacillus cereus BDRD-Cer4]
gi|229144009|ref|ZP_04272425.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST24]
gi|228639406|gb|EEK95820.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST24]
gi|228656660|gb|EEL12486.1| Peptidase A24A domain protein [Bacillus cereus BDRD-Cer4]
Length = 249
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESIFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I+ R +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIVLKR----------------IEV 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
IP+G IS+G + +Y
Sbjct: 226 GKPIPFGPFISLGAMCYVLAAY 247
>gi|167646085|ref|YP_001683748.1| peptidase A24A domain-containing protein [Caulobacter sp. K31]
gi|167348515|gb|ABZ71250.1| peptidase A24A domain protein [Caulobacter sp. K31]
Length = 255
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 52/161 (32%), Gaps = 20/161 (12%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVM-LGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + L+ A+ D +P+ ++ + L +L+T L + VG +
Sbjct: 106 LLGWSLLTVAIVDAEHLWLPDVLTWPLGLTGWLVTVALNIAAPWEPLIGAAVGYGALAVI 165
Query: 73 FCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ MG GD +LL + W GW ++ G+ + L
Sbjct: 166 AFAYEKLRGRQGMGDGDPRLLGAIGAWVGWDGLPSVLVWACGAGLGLAAARFLMRGR--- 222
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+P+G +++G ++ +
Sbjct: 223 ------------LDAAQPLPFGTFLAIGAWFTWIWGPMAVW 251
>gi|194335920|ref|YP_002017714.1| peptidase A24A prepilin type IV [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308397|gb|ACF43097.1| peptidase A24A prepilin type IV [Pelodictyon phaeoclathratiforme
BU-1]
Length = 292
Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 22/155 (14%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLL--TAFLLGMDYELIALHLLVGLIVFIICFCFFAF---- 78
D S ++P+ V + + L A + AL V L + F
Sbjct: 107 IDWDSTLLPDWVVLPLGVVGLASSYAGFTPHSLFVSALSAAVVLGLLGGLAWLFRRIKGE 166
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+ +GGGD+KLL + A W+G L+ + ++ + R P
Sbjct: 167 SGIGGGDLKLLAALATWWGIVGVLYIVLWASV----VTVLWYVVWRRFKGLGPQAEW--- 219
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
P+G AI + L + L
Sbjct: 220 ---------PFGPAIVVAALAWGLQTAYLPTQLDA 245
>gi|119483365|ref|ZP_01618779.1| type 4 prepilin peptidase [Lyngbya sp. PCC 8106]
gi|119458132|gb|EAW39254.1| type 4 prepilin peptidase [Lyngbya sp. PCC 8106]
Length = 273
Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 31/188 (16%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA--------FLLGM 53
S V + LV AL DL + +PN ++ L L +
Sbjct: 97 NASTPVEIVGYWALLSWLVALALIDLDTLTLPNGLTQSGLVVGLGFQMAQAAEQGWNSAA 156
Query: 54 DYELIALHLLVGLIVFIICFCFFAFN-------IMGGGDVKLLTSTAVWFGWTPSFLSFL 106
+ ++ ++ + MG GD KL W GW L+
Sbjct: 157 VSRSLMGGIVGAVLGLWLLDIIALVGSLALGQTAMGAGDSKLAALMGAWLGWKYLLLAGF 216
Query: 107 FFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ + I + +P+G +S+ ++
Sbjct: 217 IACVLGAFVGGGAIALG----------------WLDRRQPMPFGPFLSIAAGLTALWGET 260
Query: 167 FKVALMGL 174
A + L
Sbjct: 261 ILDAYLNL 268
>gi|218234954|ref|YP_002366088.1| late competence protein comC [Bacillus cereus B4264]
gi|218162911|gb|ACK62903.1| late competence protein comC [Bacillus cereus B4264]
Length = 240
Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D F +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 113 VTDYFYMLIPDCILISFAVLLILESIFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 172
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I+ R +
Sbjct: 173 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIVLKR----------------IEV 216
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
IP+G IS+G + +Y
Sbjct: 217 GKPIPFGPFISLGAMCYVLAAY 238
>gi|78357401|ref|YP_388850.1| hypothetical protein Dde_2358 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219806|gb|ABB39155.1| membrane protein, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 185
Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 15/184 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + ++ L+ ++D+ + IPN ++ L + + L
Sbjct: 1 MQTVMPILLVSILMTDVVTDIRAMRIPNWLTFP-AMIAGLAGHGAAGGADGLLFSLAGLG 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F +MG GDVKL+ + + G F +F++ G +L
Sbjct: 60 LGAALMLLPFLAGVMGAGDVKLMGAAGAFLGAQGVFGAFIWTSFAGGAYALGVLLFHLPQ 119
Query: 127 TNHIPIFGMFVPKSFLMKN--------------KIPYGIAISMGGLISYPDSYLFKVALM 172
+ + L+ ++ YG+AI+ G + S S
Sbjct: 120 LRAVGRALHTSFTTMLVTGEMTYTPATGGKALPRLCYGVAIAAGTVTSMYFSGALDAVFS 179
Query: 173 GLSA 176
G+ A
Sbjct: 180 GIMA 183
>gi|188532929|ref|YP_001906726.1| Type IV-A prepilin peptidase PilD [Erwinia tasmaniensis Et1/99]
gi|188027971|emb|CAO95828.1| Type IV-A prepilin peptidase PilD [Erwinia tasmaniensis Et1/99]
Length = 265
Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 23/146 (15%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFL---LTAFLLGMDYELIALHLLVGLIVFIICFCFFAF-- 78
L D ++P+ +++ +L L L +L G + + G + + +
Sbjct: 125 LIDAEHQLLPDALTMPLLWIGLSANLLGWLRGPGLAAAVIGAIAGYLTLALLAQGYRLLS 184
Query: 79 --NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+ +G GD KLL + W GW + L + + L R
Sbjct: 185 GKDALGLGDAKLLAALGAWLGWQQLPVLLLLASISGITWVLLTHLLFRR----------- 233
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYP 162
+ +P+G +S GLI
Sbjct: 234 -----SLNAPLPFGPFLSAAGLILLI 254
>gi|268593085|ref|ZP_06127306.1| type IV pili leader peptidase and methylase [Providencia rettgeri
DSM 1131]
gi|291311354|gb|EFE51807.1| type IV pili leader peptidase and methylase [Providencia rettgeri
DSM 1131]
Length = 269
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 11/163 (6%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLV 64
+ + ++ + D +P+ ++ +L LL L +L+
Sbjct: 96 LYMVLFLTLYINLIIPLFIIDNKIGYLPDILTYPLLWLGLLYQIHLPNGNVVSAIYAVLI 155
Query: 65 GLIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V ++ MG GD KL+ + + W G + V
Sbjct: 156 SYLVMLMVVTLVEKQTSQPQMGRGDFKLVAACSAWLGVWQLPYFLGTAAGVGLLQYWVIY 215
Query: 121 LTV------RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
+ + N + K IP+G A+ +
Sbjct: 216 GLLPKIYQKKQQANQAYPEILSGAKIAKKTKTIPFGPALIISA 258
>gi|27378602|ref|NP_770131.1| hypothetical protein blr3491 [Bradyrhizobium japonicum USDA 110]
gi|27351750|dbj|BAC48756.1| blr3491 [Bradyrhizobium japonicum USDA 110]
Length = 171
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
+ A D+ + +I N + +V+ ++T + + I+F++ F +
Sbjct: 21 YVATIDVATRLIRNEICLVLAFLGIVTQLPNAIQIAESLIAAA---ILFLLLFVLYTRGG 77
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG------ 134
+GGGDVKLLT+ A+ F T L A+ GGIL++ L +R++
Sbjct: 78 IGGGDVKLLTALAIGFPLTGVI-QLLTVTALAGGILALVHLLMRLLPYPRLAPAGSSLMR 136
Query: 135 ---MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
L +PYG+A++ GG+ + L
Sbjct: 137 RVYAVERWRHLRHAPLPYGVAVACGGIWTIFSRGL 171
>gi|229177812|ref|ZP_04305185.1| Peptidase A24A domain protein [Bacillus cereus 172560W]
gi|228605603|gb|EEK63051.1| Peptidase A24A domain protein [Bacillus cereus 172560W]
Length = 249
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I L + + + ++ + + + C +GG
Sbjct: 122 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I R +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR----------------IEV 225
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +P+G IS+G + +Y
Sbjct: 226 RKPLPFGPFISLGAICYVLAAY 247
>gi|325958918|ref|YP_004290384.1| peptidase A24A domain-containing protein [Methanobacterium sp.
AL-21]
gi|325330350|gb|ADZ09412.1| Peptidase A24A domain protein [Methanobacterium sp. AL-21]
Length = 391
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA---FLLGMDYELIALHLL 63
+ +I ++A+ SDL +I N+++ ++ ++ L+ D L
Sbjct: 5 IPLITIIIAVVACIYASYSDLKFGLIKNKLTFPLIAIGIILNGIYVLITNDIFLFLEGCF 64
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
V +VFI+ + F+ GGDVKL T+ A + +
Sbjct: 65 VTGLVFIVGYVFWKMGAWAGGDVKLFTAVAALIPFYAT 102
>gi|300023666|ref|YP_003756277.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC
51888]
gi|299525487|gb|ADJ23956.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC
51888]
Length = 184
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 24/168 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD----------YELI 58
+A + + ++ A SD +IP+ +S+ + LL A
Sbjct: 31 AAASCLLGWMMLLIAQSDAERYIIPDALSLPSIPLGLLVAISFDETNHNPPLVIEHLGAA 90
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+ + V + + +G GDVKL W G+ S L + G + V
Sbjct: 91 LVSAALLFGVRAAYYHWRGREGLGLGDVKLGAVAGAWTGFQGMTNSLLIGCLLAIGYVGV 150
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
L R I +P+G+ + + + + L
Sbjct: 151 VSLWHRRIP--------------GRATALPFGVFFAPAIWLVWLWNAL 184
>gi|116624254|ref|YP_826410.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Candidatus Solibacter usitatus Ellin6076]
gi|116227416|gb|ABJ86125.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Candidatus Solibacter usitatus Ellin6076]
Length = 269
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/186 (10%), Positives = 52/186 (27%), Gaps = 40/186 (21%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-------------- 54
+A + ++ SDL ++P+ + + L+ + + +
Sbjct: 98 AAKMCVFSAIVIALIFSDLEKRILPDEFTKGGIVLGLIFSLFVPVPDITAQAMFWMAGGE 157
Query: 55 -------YELIALHLLVGLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFL 103
A+ + + +G GDVKL+ + G + L
Sbjct: 158 LTGWKQSLAESAVGAFLPAFFLWFGGWLYFKVRHREGLGFGDVKLIAMVGSFLGLRGALL 217
Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ + +I G ++ + + ++P+G + L +
Sbjct: 218 TLIL-GSIAGSVIGYSYIKLTGKDPSEY--------------ELPFGTFLGFAALFAGIA 262
Query: 164 SYLFKV 169
Sbjct: 263 GAQLLA 268
>gi|296501986|ref|YP_003663686.1| ComC protein [Bacillus thuringiensis BMB171]
gi|296323038|gb|ADH05966.1| ComC protein [Bacillus thuringiensis BMB171]
Length = 240
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 16/135 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 113 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 172
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I R +
Sbjct: 173 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR----------------IEV 216
Query: 144 KNKIPYGIAISMGGL 158
+ IP+G IS+G +
Sbjct: 217 RKPIPFGPFISLGAM 231
>gi|319651728|ref|ZP_08005854.1| hypothetical protein HMPREF1013_02466 [Bacillus sp. 2_A_57_CT2]
gi|317396547|gb|EFV77259.1| hypothetical protein HMPREF1013_02466 [Bacillus sp. 2_A_57_CT2]
Length = 180
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 16/157 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
V +V +SD +IPN+V +V L+ + +L +
Sbjct: 28 EVIVAWTLVSLMVIIFVSDYKYMIIPNKVLLVFGVILTAERILIPLSPWWDSLAGGILGF 87
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ ++ + MGGGD+KL + + G LSF + +L
Sbjct: 88 LLLLFIAVISKGGMGGGDIKLYSVIGIALGVKLVLLSFFLATLFGAFLGGTGMLIG---- 143
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G I +G +I+Y
Sbjct: 144 ------------VVKKGKPIPFGPFIGLGTIIAYFYG 168
>gi|152994345|ref|YP_001339180.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1]
gi|150835269|gb|ABR69245.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1]
Length = 186
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 24/177 (13%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD----------- 54
M + + F V+ L+DLF I N + + +L + A L
Sbjct: 1 MTDLLISSVLMFTSVWVILTDLFYRRIHNILIVGLLLGWCGIAILSFWSVGPYSNIHSGD 60
Query: 55 -YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
+ + V I+ F F MG GDVKL++ +W G+ + + + G
Sbjct: 61 LLSYLGYSIAGAAGVLIVGFGLFLIGQMGAGDVKLMSVLCLWVGYDNQLVFLVVTALVGG 120
Query: 114 GILSVF------------ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ + ++ + S +PYG+AIS G
Sbjct: 121 MLALLMPVLSLLEIAGAKVIVQISSRFPRLKIPAPLVFSREGVKGLPYGLAISGGAF 177
>gi|30019457|ref|NP_831088.1| ComC protein [Bacillus cereus ATCC 14579]
gi|29895001|gb|AAP08289.1| ComC protein [Bacillus cereus ATCC 14579]
Length = 240
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 113 VTDYLYMLIPDCILISFAVLLILESIFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 172
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ + I+ R +
Sbjct: 173 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIVLKR----------------IEV 216
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
IP+G IS+G + +Y
Sbjct: 217 GKPIPFGPFISLGAMCYVLAAY 238
>gi|118444319|ref|YP_877683.1| prepilin peptidase, type IV [Clostridium novyi NT]
gi|118134775|gb|ABK61819.1| prepilin peptidase, type IV [Clostridium novyi NT]
Length = 246
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYEL 57
+K + +LI L+ D + + + I + FL+ + L +
Sbjct: 89 LKYGLTLDLIKYLILFSFLIVIGCIDYNTTDVYFSTTSTGIGIGILFLVINWYLKLPVRT 148
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
L ++G I ++ MG GDV++ + ++ G + L + G + +
Sbjct: 149 YFLGAIIGGIFILLIAVLT--GGMGFGDVEICIFSGIYIGTKLTVLMLFLSFILGGAVGA 206
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ I++ + K+ IP+G IS+ +I+
Sbjct: 207 ILIISKKK----------------SRKDYIPFGPYISIATMIAVLFGE 238
>gi|103488243|ref|YP_617804.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
gi|98978320|gb|ABF54471.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
Length = 163
Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 1/126 (0%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
SDL IPN + +++ F++ L H + ++ F F GGG
Sbjct: 22 SDLRYRRIPNLIPALIVLLFIVGWLLGFPFTGPWWAHGFHFVAALLVGMLLFRFGWFGGG 81
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFGMFVPKSFLM 143
D KL + A+WF ++ + L A I+ V + V P P+
Sbjct: 82 DAKLYAACALWFSFSDALLLMFVTTASGAVIVLVRALAIVARSIFGSPGAPPDGPRQKRA 141
Query: 144 KNKIPY 149
IPY
Sbjct: 142 PRTIPY 147
>gi|228957675|ref|ZP_04119422.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228802017|gb|EEM48887.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 249
Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 16/135 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKLL G F+ + I R +
Sbjct: 182 GDVKLLLLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR----------------IEV 225
Query: 144 KNKIPYGIAISMGGL 158
+ IP+G IS+G +
Sbjct: 226 RKPIPFGPFISLGAM 240
>gi|87199544|ref|YP_496801.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
DSM 12444]
gi|87135225|gb|ABD25967.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
DSM 12444]
Length = 157
Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 9/154 (5%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ FL+ V +SD+ + +PN + + + L + L + I G
Sbjct: 7 QAIAFLLLLGFAVAGTISDVRNRRLPNWLCLATAVTGLGASLFLLEYGDPIWAFPAHGAA 66
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
I+ FA +GGGD K + A WF + L + +L +F R
Sbjct: 67 SLIVGMALFALRWIGGGDAKFYAAVACWFPLRLAALLLVTVTLSGVLLLILFFAIRRFRG 126
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
I S +PYG+AI GGL++
Sbjct: 127 LPI---------SRKDGASLPYGVAIGTGGLVAL 151
>gi|309785644|ref|ZP_07680275.1| type 4 prepilin-like s leader peptide-processing enzyme domain
protein [Shigella dysenteriae 1617]
gi|308926764|gb|EFP72240.1| type 4 prepilin-like s leader peptide-processing enzyme domain
protein [Shigella dysenteriae 1617]
Length = 129
Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 20/141 (14%)
Query: 32 IPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDV 86
+P+R + +L S LL ++G F + + + +G GDV
Sbjct: 2 LPDRFTCPLLWSGLLFYQVCHPDGLADALWVAIIGYGTFAVIYWGYRILRHKEGLGYGDV 61
Query: 87 KLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNK 146
K L + W W + G + + +L +KN
Sbjct: 62 KFLAALGAWHSWAFLPRLVFLAASFACGAVVIALLMRGKE---------------SLKNP 106
Query: 147 IPYGIAISMGGLISYPDSYLF 167
+P+G ++ G + DS+L
Sbjct: 107 LPFGPFLAAAGFVIGWDSFLI 127
>gi|92116345|ref|YP_576074.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
gi|91799239|gb|ABE61614.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
Length = 159
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 21/160 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL--TAFLLGMDYELIALHLLV 64
+ +A + V+ A DL +IP+R+++++ + ++ A +V
Sbjct: 5 LTTASLSVLGLACVWLAWIDLRDGIIPDRLNLLVAATGVVRMAALAGWEPAGARLCEGVV 64
Query: 65 GLIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
V + + +G GDVKLL ++AVW G L +
Sbjct: 65 IGAVVWLLRWLYFKWRKLQGLGLGDVKLLAASAVWIGVAGVPTQLLIASVTALAAAGLMQ 124
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
L+ R + + +P+G +++G L +
Sbjct: 125 LSKRTV---------------TRQTALPFGPFLALGLLAA 149
>gi|196230110|ref|ZP_03128973.1| peptidase A24A domain protein [Chthoniobacter flavus Ellin428]
gi|196225707|gb|EDY20214.1| peptidase A24A domain protein [Chthoniobacter flavus Ellin428]
Length = 400
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 16/92 (17%)
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GDVK + + GW + + I + I R
Sbjct: 314 REAMGFGDVKFIACIGAFLGWKAVLFTIMSASTIGALVGIATIAIGRREW---------- 363
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
KIP+G +++G LI +
Sbjct: 364 ------STKIPFGPYLALGALIWLFCGPELIL 389
Score = 42.9 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---------MDYEL 57
+ + + I + A D +IP+ ++I + +L +F + M
Sbjct: 136 LLALPYWIMGGLFIVATFIDFEHFIIPDEITIGGAVAGVLLSFAIPSLNDQHSNIMSGLW 195
Query: 58 IALHLLVGLIVFIICFCF 75
+G V +
Sbjct: 196 SIFGAGLGYGVLWLVVEL 213
>gi|159043670|ref|YP_001532464.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12]
gi|157911430|gb|ABV92863.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12]
Length = 169
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 4/163 (2%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+F A SD+ IPNR +++LG F + L + A + + V
Sbjct: 11 FLPFILPICLFVAWSDMKFMRIPNRSVLLLLGMFAIVGL-LALPLLDYAWRWVHVIAVLA 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F + ++G GD K + A + + L + F AIL G + L
Sbjct: 70 VGFVMSSAGLVGAGDAKFAAAMAPFVALQDALLVVVLFSAILLGAFATHRLAR---MLPA 126
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+S+ K P G+A+S + + L +
Sbjct: 127 VRRLTPDWESWTRKRDFPMGLALSGTLIFYFLLPVLLPQVTLS 169
>gi|326388866|ref|ZP_08210448.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206466|gb|EGD57301.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens
DSM 19370]
Length = 161
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
+DL I N ++ + L + G+ + +AL L + + F + FA MG
Sbjct: 23 FTDLRRRQIDNWLNATVALGAPLFWWASGLSLWPGVALQLALAVGTFAVLAGLFALRAMG 82
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GGDVKLLT+ A+W FL L +A+ GG+L++ + +
Sbjct: 83 GGDVKLLTALALWL-PVVLFLRLLLIMALAGGLLTIVLGMWHVTRRRKNRL--------- 132
Query: 143 MKNKIPYGIAISMGGLISYPDSYL 166
+IPYG+AI+ GL +
Sbjct: 133 ---QIPYGVAIAGAGLWILASTDW 153
>gi|315500688|ref|YP_004089489.1| peptidase A24A domain protein [Asticcacaulis excentricus CB 48]
gi|315418700|gb|ADU15338.1| peptidase A24A domain protein [Asticcacaulis excentricus CB 48]
Length = 264
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + F L+ +L D+ + +PN + ++L L + + G + V ++
Sbjct: 111 QALAVGLLGFALLALSLIDIQTFRLPNPLVFMVLVFSGLLSVVRGEGLTSLLWAAGVFIV 170
Query: 68 VFIICFCFFAFNI---MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + F + +G GD+KL+++ A+W G + + + L + ++ + +
Sbjct: 171 LKALQFILQKRSGVAALGEGDIKLMSALALWLGSSVA------YAFTLASLGALVFIVLT 224
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ +IP+G I+ G +
Sbjct: 225 R-----------------RRGRIPFGPFIAAGAFVV 243
>gi|160897517|ref|YP_001563099.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1]
gi|160363101|gb|ABX34714.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1]
Length = 189
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 1/141 (0%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
S + L A+ DL + N + ++ L + +++ A + L GL+
Sbjct: 4 TSLWLCVCITWLATIAVMDLRIRRVRNWMVLLGLATGAAALASGAQPFQVSAWNALAGLL 63
Query: 68 -VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
F++ F+A MG GDVK +WFG + L ++L G+ + +L++R +
Sbjct: 64 AGFVVLLPFYALRWMGAGDVKFGAVAGLWFGLSFDLLLIWTGGSLLAGLHGLLVLSLRHL 123
Query: 127 TNHIPIFGMFVPKSFLMKNKI 147
++ + ++
Sbjct: 124 SHSPTGLWLQARLPLAWAARL 144
>gi|163785219|ref|ZP_02179896.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Hydrogenivirga sp. 128-5-R1-1]
gi|159879515|gb|EDP73342.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Hydrogenivirga sp. 128-5-R1-1]
Length = 141
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 19/154 (12%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFCFFA----FNI 80
D +IP+ ++++ S ++ +F + +VG + +
Sbjct: 2 DFDFKIIPDEINLIGFISGIIYSFFRHDFSVVDALIGAVVGAGFLWLIAFLYLKYRGIEG 61
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
+G GDVKLL +FGW S F + I + +
Sbjct: 62 LGMGDVKLLAFFGTYFGWFGSLFIIFFGSLVGAVIGILSAYFSKAEDKSTY--------- 112
Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+IP+G +S+ +I K GL
Sbjct: 113 -----EIPFGPFLSLAAVIYLFFGEYIKQFYFGL 141
>gi|85705160|ref|ZP_01036260.1| membrane protein, putative [Roseovarius sp. 217]
gi|85670482|gb|EAQ25343.1| membrane protein, putative [Roseovarius sp. 217]
Length = 166
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 9/164 (5%)
Query: 2 KESKMVFSAVFLIPPFCL---VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI 58
++ A PF L V+ A SDL IPN + ++G FL+ + +
Sbjct: 1 MTLEITAQAALWFLPFVLPVCVWVAWSDLSRMKIPNTAVLTLVGIFLVVGLIA-LPISDY 59
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
L ++ + A +MG GD K + + A + I L
Sbjct: 60 PWRLAHLAVMLVAGIAMNAAGLMGAGDAKFIAAAA----PFVALGDAATLCLIFAATLLG 115
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+T R+I +S+ K P G A+ G L Y
Sbjct: 116 AFVTHRVIKYSPLRRLAPDWQSWNTGKKFPMGFALG-GTLAIYL 158
>gi|148557763|ref|YP_001265345.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
gi|148502953|gb|ABQ71207.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
Length = 157
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
+D+ + I N ++ + ++ ++ G + +AL + V L +F + F +MG
Sbjct: 22 WTDIRTRTISNELNAAIALLAIVFWWIAGEALWPDVALRIGVALAIFALFAVLFMLRMMG 81
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GGDVK++ + A+W + + L +A+ GG +++ +L + +
Sbjct: 82 GGDVKMIGALALWL-PFHALIVMLTVMALAGGAITLGLLIRQR------------WRPNA 128
Query: 143 MKNKIPYGIAISMGGLISYPDSYL 166
+ ++PYG+AI++GGL + L
Sbjct: 129 DRPEVPYGVAIAIGGLWVIANGLL 152
>gi|197106457|ref|YP_002131834.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium
zucineum HLK1]
gi|196479877|gb|ACG79405.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium
zucineum HLK1]
Length = 164
Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 6/155 (3%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ LV+AA SD F +IPNRV ++ G++LL + L VG+
Sbjct: 10 AFALVLFAASLVWAAASDFFRYLIPNRVCALIAGAYLLAFP--ALALSAWVGGLGVGIAA 67
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ FA +GGGDVKL + ++W G + + +R +
Sbjct: 68 LALGTILFARGWVGGGDVKLAAALSLWAGPALLSGFAFVTSLAGAALAVAMLSPLRRLMP 127
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ ++ +P+G+ ++ GG
Sbjct: 128 RPAGETLAEG----LRQPMPFGVPLAAGGGWVLTQ 158
>gi|312972403|ref|ZP_07786577.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli 1827-70]
gi|310334780|gb|EFQ00985.1| type 4 prepilin-like proteins leader peptide-processing enzyme
[Escherichia coli 1827-70]
gi|323970139|gb|EGB65413.1| type IV leader peptidase [Escherichia coli TA007]
Length = 171
Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 21 IVTGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAG 80
Query: 66 LIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + +G GD KLL + W GW + L G V L
Sbjct: 81 YGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQL 140
Query: 122 TVRMITNHIPIFGMFVPKSF 141
R I S
Sbjct: 141 LQRRTITTIAFGPWLALGSM 160
>gi|167836691|ref|ZP_02463574.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis
MSMB43]
Length = 166
Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ V + + ++ A+SDL +PN + + + AFL G +A H + G
Sbjct: 1 MAYLVKVAACWVVIALAVSDLRFRRLPNLSVAALAALYCVHAFLAGSHAPELAAHAVAGG 60
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
I F + + F + GGD KL W G + F F V++ G ++ + +LT +
Sbjct: 61 IAFAVAAVMWRFGWIAGGDAKLAAVVFWWAGLAHAAGVF-FTVSVCGLVIGLAVLTAGAM 119
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ +++ S +PYGIA+++GGL
Sbjct: 120 LRRVAHAPLWLT-SLAPSRGVPYGIALALGGL 150
>gi|149193963|ref|ZP_01871061.1| Peptidase A24A-like protein [Caminibacter mediatlanticus TB-2]
gi|149135916|gb|EDM24394.1| Peptidase A24A-like protein [Caminibacter mediatlanticus TB-2]
Length = 250
Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 19/161 (11%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L+ A+ D+ +P+ +++++L + + + +++ L + I+ F
Sbjct: 109 FSGLLALAIIDIDYKAVPDNLNLLVLALSIFHSPDILENFKNALLVIGGMSIIRWYLSYF 168
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
MG GD+ + G S ++ AIL I S++ L +
Sbjct: 169 IKKEAMGEGDLIIGGVMGAMLGINLSLIAIFI-SAILAIIPSIYFLLQKKEP-------- 219
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
++P+ +++G I + S F L A
Sbjct: 220 ----------ELPFIPFLALGTFIVWYFSNFFNSYWSSLYA 250
>gi|167584954|ref|ZP_02377342.1| peptidase A24A, prepilin type IV [Burkholderia ubonensis Bu]
Length = 175
Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 16/163 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L ++ AA +DL IPNR+ V LG L +L + L
Sbjct: 6 IPLCVTTLVIVAASTDLTCRRIPNRLLAVGLGGALTAQCVLLGPWAGALAWLAGAATGLA 65
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ + + M GDVKL+ + W G + + + GG+ ++ ++ R +
Sbjct: 66 LLLPLYLMHGMAAGDVKLMLTIGAWVGPALAVW-IVLATFVAGGVGALAVVLWRGRARQL 124
Query: 131 PIFGMFVPKSFLMKN---------------KIPYGIAISMGGL 158
++ ++ +PYG+AI+ G L
Sbjct: 125 FANVRYLLARSALRQQGLAADMPAQVASVGALPYGVAIAAGTL 167
>gi|91775998|ref|YP_545754.1| peptidase A24A, prepilin type IV [Methylobacillus flagellatus KT]
gi|91709985|gb|ABE49913.1| peptidase A24A, prepilin type IV [Methylobacillus flagellatus KT]
Length = 164
Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 6/162 (3%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY---ELIALHLLVGLI 67
+ ++ A D IPN +S+ L L + G + + I+ +
Sbjct: 1 MLIMLCIWAGSLAYYDFSQRRIPNLLSLGALIFGLGYMSVAGQVFYYGQPISSAFWGLAV 60
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F++ +A +GGGDVKLL + AV G +F+ G+L+ ++ ++
Sbjct: 61 SFLLTIPGYATRTLGGGDVKLLAAIAVLCGVKVVVATFVLASL---GVLAALLVWWQLSP 117
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
V + + IP+G A+++ I ++++
Sbjct: 118 QLSTSGWAAVSRESNNRRYIPFGAALALAMGIVVLFPDMWRM 159
>gi|253990261|ref|YP_003041617.1| type 4 prepilin-like protein [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781711|emb|CAQ84874.1| type 4 prepilin-like proteins leader peptide processing enzyme
(pecti enzymes secretion protein outo) [Photorhabdus
asymbiotica]
Length = 265
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 22/155 (14%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIALHLLVGLIVF 69
LV A+ D+ ++P+++++ +L LL + L + G + F
Sbjct: 122 LWGLSSMLVALAVIDVEYMLLPDQLTLSLLWLGLLFNLDSAGFVALPLAISGAVCGYLFF 181
Query: 70 IICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F + +G GD K L + W G L ++
Sbjct: 182 RLVEWIARQLFQRDALGMGDAKFLAALGAWLGVAALPWVVLLAASLTLISYLTI------ 235
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ +S +IP+G +++ GLI
Sbjct: 236 ----------WRFRSIRTAPQIPFGPGLAVAGLIV 260
>gi|153836819|ref|ZP_01989486.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
parahaemolyticus AQ3810]
gi|149749965|gb|EDM60710.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
parahaemolyticus AQ3810]
Length = 162
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ L+ +SD IPN+ +++L + +TA +L + H GL+ F +C
Sbjct: 5 LVIWSLLIAIGVSDAQKHRIPNKAVLLLLVA--VTANVLYSPSVSLLDHAYGGLVAFAVC 62
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + M GGDVKLL W G + + + GGI+ +F L + + + + +
Sbjct: 63 FALYLVKAMAGGDVKLLAVIGAWLGMSN-LWEASIGIILAGGIVGIFYLMLHIASTSVAL 121
Query: 133 FGMFVPKSFLMKNK---------IPYGIAISMG 156
IP+ I +G
Sbjct: 122 THQVKGYCIEKVTPGFRSNKPLVIPFAPVIVIG 154
>gi|110632967|ref|YP_673175.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1]
gi|110283951|gb|ABG62010.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1]
Length = 170
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 65/168 (38%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
S L+ +++A + D+ + I NR+ +++ ++++ A L G+ + +
Sbjct: 1 MISSFAAWVALLLFAGTMIYAGIKDVATMTITNRLVLLLAAAYVVLAPLAGLGVDEMLAA 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ F FA +GGGD KL +W G + + + I
Sbjct: 61 AAAASLMLAGTFLLFALGWIGGGDAKLAAVAVLWLGADQTLPYIFYVSVAGALLTLALIQ 120
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
R + + + +PYG A++ L+ P++ LF
Sbjct: 121 FRRFPLPAVLQRLTWTERLHSAAAGVPYGAALAGAALLLLPETALFAA 168
>gi|28899196|ref|NP_798801.1| hypothetical protein VP2422 [Vibrio parahaemolyticus RIMD 2210633]
gi|260361566|ref|ZP_05774593.1| peptidase, A24 family [Vibrio parahaemolyticus K5030]
gi|260876723|ref|ZP_05889078.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034]
gi|260898198|ref|ZP_05906694.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
parahaemolyticus Peru-466]
gi|260900394|ref|ZP_05908789.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037]
gi|28807420|dbj|BAC60685.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308089056|gb|EFO38751.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
parahaemolyticus Peru-466]
gi|308091369|gb|EFO41064.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034]
gi|308109134|gb|EFO46674.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037]
gi|308114018|gb|EFO51558.1| peptidase, A24 family [Vibrio parahaemolyticus K5030]
Length = 162
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ L+ +SD IPN+ +++L + +TA +L + H GL+ F +C
Sbjct: 5 LVIWSLLIAIGVSDAQKHRIPNKAVLLLLVA--VTANVLYSPSVSLLDHAYGGLVAFAVC 62
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + M GGDVKLL W G + + + GGI+ +F L + + + + +
Sbjct: 63 FALYLVKAMAGGDVKLLAVIGAWLGLSN-LWEASIGIILAGGIVGIFYLMLHIASTSVAL 121
Query: 133 FGMFVPKSFLMKNK---------IPYGIAISMG 156
IP+ I +G
Sbjct: 122 THQVKGYCIEKVTPGFRSNKPLVIPFAPVIVIG 154
>gi|73539228|ref|YP_299595.1| peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134]
gi|72122565|gb|AAZ64751.1| Peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134]
Length = 166
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 15/161 (9%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+I +DL +PN + +L + L I+ LL + +
Sbjct: 1 MIAVLFCAATLWTDLAYRRVPNALLAAVLVALSLALLTGNAPEPAISARLLGAGLGAAVT 60
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+A M GDVK L ++ G ++ ++LG + +V +
Sbjct: 61 LPVYALGRMAAGDVKFLAVAGLFTGPQG-LVTVWVVGSLLGLVHAVLAYALDSRPLSALR 119
Query: 133 FGMFVP--------------KSFLMKNKIPYGIAISMGGLI 159
M + F IPY ++ G L+
Sbjct: 120 QRMPAALRVHTAIRPASQSSRQFSKVRGIPYAAYLAAGMLV 160
>gi|309778075|ref|ZP_07673014.1| type IV prepilin peptidase [Erysipelotrichaceae bacterium 3_1_53]
gi|308914169|gb|EFP59970.1| type IV prepilin peptidase [Erysipelotrichaceae bacterium 3_1_53]
Length = 255
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 18/167 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLI 67
+ V L+ + D + IPN + I +L + TA M + + +
Sbjct: 103 TIVVFAIFMILLTITMIDFDTMTIPNGLIIALLVPVGMFTALHTEMGIVTRCIGFFIVSL 162
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + GGGD+KL+ GW + L+F I+GG ++ +L +
Sbjct: 163 PMYLLTVL-IPDCFGGGDIKLIAVAGFLLGWKLTLLAFFI-SVIIGGCYAICLLLSKKT- 219
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
I +G + G +IS A + L
Sbjct: 220 --------------EKGAHIAFGPYLCTGIMISLLYGEKLIQAYLSL 252
>gi|134295592|ref|YP_001119327.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
gi|134138749|gb|ABO54492.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
Length = 166
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 2/151 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + + + A SD+ IPN + + + +A + + LH L+G
Sbjct: 1 MAYFISIGVFLAWAILVAASDIRYRRIPNSLVFGGVAAAFASALCGASPFGIAPLHALLG 60
Query: 66 -LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
L+ FF +MG DVK+ + W G L +++ + ++ +L +
Sbjct: 61 MLVGMACLLPFFVARVMGAADVKVFAALGAWCGVHG-LLWLWIAASLVACLHALAVLLLT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
+ PYG +++
Sbjct: 120 RTPLRALRGRSAPTLALGRYRATPYGACLAI 150
>gi|299069501|emb|CBJ40770.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
solanacearum CMR15]
Length = 185
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 10/144 (6%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFIICFCFFAFNIMG 82
SDL S +PN + V L ++ + L G I +A MG
Sbjct: 25 SDLRSRRVPNWLVAVGLVLSIVLVKFGSVMALAYDWRDVWLGGAIALASFLPLYALGWMG 84
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI--------FG 134
GDVK + GW +L + G +L R +
Sbjct: 85 AGDVKFFAVAGLLAGWHGLVAIWLVSSVLAGVHALAILLLRRADASAPSGWMLMRVCPAL 144
Query: 135 MFVPKSFLMKNKIPYGIAISMGGL 158
+ IPY +++G L
Sbjct: 145 ARWDAEQAGRRGIPYAAYMAIGLL 168
>gi|86138001|ref|ZP_01056577.1| membrane protein, putative [Roseobacter sp. MED193]
gi|85825593|gb|EAQ45792.1| membrane protein, putative [Roseobacter sp. MED193]
Length = 168
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 5/162 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ S V AA +DL S IPN ++ + +++ + +
Sbjct: 4 LAGSAEVARWFLPFVLPLCFAAAYTDLSSMRIPNWITDSLGAVYVILGLFIMPSWADYGW 63
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
LL I I F F++ +MG GD K + + A + + A L +
Sbjct: 64 QLLHLPIGVAIGFLFYSAGVMGAGDAKFIGAAAPLVVLADLPALIMIYTANLLAAFA--- 120
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
T R+ +S+ + K P G ++ G L Y
Sbjct: 121 -THRLAKFTPLNRLAPNWQSWSVGKKFPMGFSLG-GTLAIYL 160
>gi|73542326|ref|YP_296846.1| peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134]
gi|72119739|gb|AAZ62002.1| Peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134]
Length = 190
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 15/177 (8%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
S + + I + AA DL IPN +++ + L +
Sbjct: 14 MSSATFATFIGPITIAIVSTAAAIDLDRRRIPNWLTLGSWIAALPMQVAIHGIAAGSLAW 73
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L + II F+ M GDVKL+ + W G S ++GG ++ +L
Sbjct: 74 LYGWIAGLIIFLPFYLLRGMAAGDVKLMAAVGAWLG-ASMVPSIAVATWLIGGAWALAML 132
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNK--------------IPYGIAISMGGLISYPDS 164
V T + S + IPYG+AI+ G L
Sbjct: 133 LVTGQTGATLSRVGNMLLSAAIHRGHGLAKSGSKSSAGSIPYGVAIAGGTLAMLFFG 189
>gi|328474267|gb|EGF45072.1| hypothetical protein VP10329_16210 [Vibrio parahaemolyticus 10329]
Length = 162
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ L+ +SD IPN+ +++L + +TA +L + H GL+ F +C
Sbjct: 5 LVIWSLLIAIGVSDAQKHRIPNKAVLLLLVA--VTANVLYSPSVSLLDHAYGGLVAFAVC 62
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + M GGDVKLL W G + + + GGI+ +F L + + + + +
Sbjct: 63 FALYLVKAMAGGDVKLLAVIGTWLGLSN-LWEASIGIILAGGIVGIFYLMLHIASTSVAL 121
Query: 133 FGMFVPKSFLMKNK---------IPYGIAISMG 156
IP+ I +G
Sbjct: 122 THQVKGYCIEKVTPGFRSNKPLVIPFAPVIVIG 154
>gi|239624660|ref|ZP_04667691.1| peptidase A24A domain-containing protein [Clostridiales bacterium
1_7_47_FAA]
gi|239521046|gb|EEQ60912.1| peptidase A24A domain-containing protein [Clostridiales bacterium
1_7_47FAA]
Length = 252
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 43/134 (32%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + + L AL D IP+ +S+ +L + + + V
Sbjct: 99 EAVIMCLFGSLLTVGALIDARHMYIPDGISLSILVLAAGSLMIAPRPGLAGRIAGAVICG 158
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F+ +G GD KL+ S+ + G + L + G + ++ R+
Sbjct: 159 GFLALLRVLTKGGIGLGDAKLMASSGLLLGVGAGMAALLAAYILAGLWCLIPLIRRRVNG 218
Query: 128 NHIPIFGMFVPKSF 141
F S
Sbjct: 219 RTRIPMAPFFALSL 232
>gi|86157065|ref|YP_463850.1| prepilin peptidase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773576|gb|ABC80413.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 299
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 22/173 (12%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCF----FA 77
DL + ++P+ ++ ++ + L A + A+ VG + F +
Sbjct: 123 FIDLDTWLLPHALTWPLIATGLAAAAAGLGPATLQGSAIGAAVGFLAFALVSVVGEKVLH 182
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI------- 130
+G GDV LL+ W G L + V + +
Sbjct: 183 KEALGFGDVWLLSGIGAWLGVAALLPVVLLASVQGSVVGLVLLALGKGQPGPQPPAEAAA 242
Query: 131 ---------PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
P +N +P+G ++ G L + L + L
Sbjct: 243 PPAPSVPGDPAVLADADDWVPPRNAVPFGPFLAAGALEWLYLADLIVRGVPSL 295
>gi|84516641|ref|ZP_01004000.1| hypothetical protein SKA53_08516 [Loktanella vestfoldensis SKA53]
gi|84509677|gb|EAQ06135.1| hypothetical protein SKA53_08516 [Loktanella vestfoldensis SKA53]
Length = 163
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 5/155 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + ++ A SDL IPN ++ SF + + + +
Sbjct: 1 MGLTASAALWFLPAVVPIAIYVAWSDLRQMKIPNVAVYALVISFAVLGLIA-LPFGQYLW 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
H L ++ +I F ++G GD K + A + T L F L +
Sbjct: 60 HWLHLPVMLVIGFILNMARVLGAGDAKFTAAAAPFIATTDLPLVLPLFA----ACLLAGL 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
+T R++ + +S+ + P G ++M
Sbjct: 116 VTHRLVKISPLRRLVPHWQSWSETRRFPMGFPLAM 150
>gi|332295911|ref|YP_004437834.1| Prepilin peptidase [Thermodesulfobium narugense DSM 14796]
gi|332179014|gb|AEE14703.1| Prepilin peptidase [Thermodesulfobium narugense DSM 14796]
Length = 245
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 18/168 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + +DL + +IP+ S++ L + A L G E +A+ V L
Sbjct: 95 LEFLLHAWFFTASLGIFFTDLETLLIPDSFSLLSLIPAIGIAALRGNLVESLAVAAGVFL 154
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + + MGGGD K S + + G S LF +LG ++ + + +I
Sbjct: 155 LFYGVSIITN--GGMGGGDTKYSASMSCFLGVFHSLFG-LFTAFLLGSVIGIIFRILGII 211
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
IP+G + +G L SY F + L
Sbjct: 212 K---------------RGEPIPFGPFLVLGCLFSYGFGDYFIRLYLSL 244
>gi|317404382|gb|EFV84802.1| prepilin signal peptidase [Achromobacter xylosoxidans C54]
Length = 173
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 21/157 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
+ + LV A DL + ++P+ +++ + + LL F + + + G +
Sbjct: 19 ALCAMGLSAALVALAWIDLETTLLPDAITLPLAWAGLLVNLFDAFTPLSMAVVGAVAGYV 78
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F F MG GD KLL + WFG + L ++ G ++ +
Sbjct: 79 FLWVIFHAFRLLTGREGMGFGDFKLLAALGAWFGV-GALPMLLLAASVAGVVVGGALTLT 137
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+P+G +++ G+
Sbjct: 138 GRA---------------SRGQALPFGPYLALAGVAV 159
>gi|154244239|ref|YP_001415197.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2]
gi|154158324|gb|ABS65540.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2]
Length = 158
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 9/155 (5%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
P L +D+ +IPN V +L F A L + ++L LLV + V + F
Sbjct: 12 YPTALCTCIGTDIARRIIPNTVIAALLIGFATLAILTPLP--DLSLRLLVAVAVTALGFS 69
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
FA N++G GD KL +W L L I G + + R +
Sbjct: 70 LFAENVVGAGDAKLAGVLMLWTEPAQLPLFVLACGLIGGVLTLAALAMHRPADRLVGTIA 129
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ IPYG+A++ GL+ +P S L
Sbjct: 130 VP-------GQTIPYGVALAGAGLLLHPYSSLLGA 157
>gi|53723204|ref|YP_112189.1| pilus assembly-related outer membrane protein [Burkholderia
pseudomallei K96243]
gi|76817950|ref|YP_336466.1| type IV prepilin peptidase-like protein [Burkholderia pseudomallei
1710b]
gi|126457458|ref|YP_001076986.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
gi|226193972|ref|ZP_03789573.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
Pakistan 9]
gi|254182586|ref|ZP_04889180.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
gi|254187137|ref|ZP_04893652.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
52237]
gi|254192600|ref|ZP_04899039.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
gi|254264336|ref|ZP_04955201.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
gi|254296482|ref|ZP_04963938.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
gi|52213618|emb|CAH39672.1| putative pilus assembly-related outer membrane protein
[Burkholderia pseudomallei K96243]
gi|76582423|gb|ABA51897.1| type IV prepilin peptidase-like protein [Burkholderia pseudomallei
1710b]
gi|126231226|gb|ABN94639.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
gi|157806354|gb|EDO83524.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
gi|157934820|gb|EDO90490.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
52237]
gi|169649358|gb|EDS82051.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
gi|184213121|gb|EDU10164.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
gi|225933917|gb|EEH29903.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
Pakistan 9]
gi|254215338|gb|EET04723.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
Length = 179
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 53/169 (31%), Gaps = 14/169 (8%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L V AA DL S IPNR+ + L L+ L + A L
Sbjct: 10 IPLCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAG 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F+ M GDVKL+ + W G T + L + G + +
Sbjct: 70 LLLPFYLVRGMAAGDVKLMLAIGAWVGPTLALHIALATFVVGGAWALAVVAGRGRFRKLL 129
Query: 131 P--------------IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+PYG+AI++G L +
Sbjct: 130 ANLRHLFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIGTLGVLFAAA 178
>gi|229817343|ref|ZP_04447625.1| hypothetical protein BIFANG_02605 [Bifidobacterium angulatum DSM
20098]
gi|229785132|gb|EEP21246.1| hypothetical protein BIFANG_02605 [Bifidobacterium angulatum DSM
20098]
Length = 278
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 22/172 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI-----ALHLLVG 65
L + A DL +I N + LG + L + AL V
Sbjct: 119 ALLFFAAVSIVVAFIDLDHHLILNVIIYPSLGITAVLLALASLLTGDWMRMVHALIGAVV 178
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTV 123
L F + MGGGD+KL + GW + F +GGI+S+ +L +
Sbjct: 179 LGAFYLLLALVWAGGMGGGDIKLAVLIGLTLGWLGWPQLIVGAFAAFFVGGIISIVLLAL 238
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ + IP+G ++ +G I L + +S
Sbjct: 239 HKVKL---------------RGGIPFGPSMVIGAWIGIYAGALIANWYLQIS 275
>gi|126737246|ref|ZP_01752981.1| hypothetical protein RSK20926_12464 [Roseobacter sp. SK209-2-6]
gi|126721831|gb|EBA18534.1| hypothetical protein RSK20926_12464 [Roseobacter sp. SK209-2-6]
Length = 168
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 4/145 (2%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
AAL+DL IPN ++ + ++L + + LL I
Sbjct: 14 FLPFVLPLCYAAALTDLRGMRIPNWINDSLAAVYVLVGLFVMPTWADYGWQLLHLPIGIA 73
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F F++ ++G GD K + A + ++ + I L T R++ +
Sbjct: 74 FGFLFYSSGMIGAGDAKFAGAAAPFIAFSDLPA----LMTIFCANLLAAFATHRLVKHTG 129
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISM 155
KS+ +K P G+ +
Sbjct: 130 LRRLAPGWKSWNTGSKFPMGLCLGA 154
>gi|51597668|ref|YP_071859.1| hypothetical protein YPTB3370 [Yersinia pseudotuberculosis IP
32953]
gi|51590950|emb|CAH22608.1| Putative membrane protein [Yersinia pseudotuberculosis IP 32953]
Length = 140
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
++ ++ ++ L+F SD+ +I N+ I + + ++ + ++ + +++
Sbjct: 2 DIIRFSLMVLIVSQLLFVCYSDIRHRIISNKFVISIAFNAIILSLVMHHT-----VSIII 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
++ I + F FN+MGGGDVKL+T+ + S ++ + G ++ V +L R
Sbjct: 57 PIVALFIGYIIFHFNVMGGGDVKLITALLLALTAEQSLNFIIYTAVMGGIVMVVGLLINR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ K +PY +AI+ G L
Sbjct: 117 ---------------VDIQKRGVPYAVAITAGFL 135
>gi|37525154|ref|NP_928498.1| hypothetical protein plu1186 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784580|emb|CAE13480.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 203
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 22/154 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVF 69
V LI + L+ + D+ ++P+ ++ +L LL + E +VG ++
Sbjct: 48 VVLIFVWVLIILSFIDIKIKLLPDIINYPLLWLGLLLNLNQTFVPIEQAVTGAIVGYLIL 107
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F +G GD KL+ + + W G + + ++ G I +++ +R
Sbjct: 108 WSLYWLFRIICHKEGLGYGDFKLMAAVSAWLGI-GAIPLLMLLSSLFGLIGCLWMWRIRE 166
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + +G I++ +I
Sbjct: 167 NC----------------QEPVAFGPYIAISAVI 184
>gi|84489263|ref|YP_447495.1| hypothetical protein Msp_0452 [Methanosphaera stadtmanae DSM 3091]
gi|84372582|gb|ABC56852.1| conserved hypothetical membrane-spanning protein [Methanosphaera
stadtmanae DSM 3091]
Length = 363
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-LTAFLLGMDYELIAL 60
++ + LI C + A +D+ +IPN+++I + + L + +
Sbjct: 1 MVYNLIKISGILIVTVCCIIATYTDVKYGIIPNKLTIPLFVVGICLVSLYYFLSSTFNFF 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
+ + +I+F++ + + + GGDVKL T+ +
Sbjct: 61 YYVSIVIIFLLNYILWYLGLWAGGDVKLFTAISTLLVPEFL 101
>gi|325695681|gb|EGD37580.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK150]
Length = 270
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + A D + I + V +V + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIAYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWELLLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATI------- 239
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F F +K ++P+G A+S+ +I Y
Sbjct: 240 -------FKKFKFKLKEEVPFGPAMSIMAVILYFWG 268
>gi|269962014|ref|ZP_06176369.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3]
gi|269833337|gb|EEZ87441.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3]
Length = 161
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ LV +SD IPN+ +++L + L HL GL+ F +C
Sbjct: 4 IVVWSLLVAIGVSDAQKHKIPNKAVLLLLVVVAASVVLGPNS--NGLDHLYGGLVAFAVC 61
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + +M GGDVKLL W G + + + + GG++S+F L + + ++ I +
Sbjct: 62 FVLYLCKVMAGGDVKLLAVLGAWIGLSN-LGAASTGIVLAGGVVSLFYLALHIGSSTINL 120
Query: 133 FGMFVPKSFLMKNK---------IPYGIAISMG 156
IP+ I +G
Sbjct: 121 SDQVKGYCLEKVTPGLKASKPLVIPFAPVIVIG 153
>gi|87299149|emb|CAJ76212.1| competence transcription factor C [Bacillus sp. Ob 07]
gi|87299163|emb|CAJ76219.1| competence transcription factor C [Bacillus sp. Ob 20]
Length = 186
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 37/106 (34%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 79 VTDYIYMLIPNRILAWFACLLILECVFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 138
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
GD+KLL+ G F+ V I+ RM
Sbjct: 139 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGVGIVLKRMKMRS 184
>gi|163814912|ref|ZP_02206300.1| hypothetical protein COPEUT_01063 [Coprococcus eutactus ATCC 27759]
gi|158449851|gb|EDP26846.1| hypothetical protein COPEUT_01063 [Coprococcus eutactus ATCC 27759]
Length = 238
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 55/146 (37%), Gaps = 7/146 (4%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-------TAFLLGMDYELIA 59
+ + + L D + IP +++ +L ++ + G +
Sbjct: 73 LEAVTVFLFFALLTIITFIDADTMEIPFVLNVCILVLGVISIFTRGGFSLTGGDLSLVSR 132
Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
L ++ + + + + GGGD+KL+ + + GW + ++F + I G ++
Sbjct: 133 LIGMICVSLPLFLIVLVIPDGFGGGDIKLMFAAGFFLGWKATVIAFFIGLIIGGCQGAIL 192
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKN 145
++ + + FG + ++
Sbjct: 193 LIRRKKGKDEHFAFGPALSVGLMIAT 218
>gi|153953736|ref|YP_001394501.1| type IV leader peptidase/N-methyltransferase [Clostridium kluyveri
DSM 555]
gi|219854354|ref|YP_002471476.1| hypothetical protein CKR_1011 [Clostridium kluyveri NBRC 12016]
gi|146346617|gb|EDK33153.1| Predicted type IV leader peptidase/N-methyltransferase [Clostridium
kluyveri DSM 555]
gi|219568078|dbj|BAH06062.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 250
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 21/170 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLL 63
+ +++ ++ + D + + + + I+ FL+ F +G+ + +
Sbjct: 98 IELIKYMVFISIMIVIGMIDFHTTDVYLKTTGTGIIAGIIFLVIYFYIGLPIKTYVYGGV 157
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + MG GDV++ ++ G+ + L I I V IL
Sbjct: 158 SAGVFIALIILITK-GGMGWGDVEIALICGLFLGFKYTMLMLFLAFIIGAVIGLVLILLG 216
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI-SYPDSYLFKVALM 172
+ K+ IP+G I + I + + L
Sbjct: 217 KK----------------SRKDYIPFGPFIVIASFITVFLGQSILNWYLF 250
>gi|303248281|ref|ZP_07334543.1| peptidase A24A prepilin type IV [Desulfovibrio fructosovorans JJ]
gi|302490306|gb|EFL50218.1| peptidase A24A prepilin type IV [Desulfovibrio fructosovorans JJ]
Length = 165
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 12/136 (8%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
D+ + IPN ++ + + LL + + L FI+ F ++G G
Sbjct: 24 IDIRTKRIPNAITFPVA-AALLLLHGVFSGTTGLTSSALGLAGGFIVFLIPHLFGVLGAG 82
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
DVKL+ G + LF G V++ +R+
Sbjct: 83 DVKLMAMVGAGLGTQALLTAVLFTSIAGGAQFFVWLAWMRLAGTRK-----------GRG 131
Query: 145 NKIPYGIAISMGGLIS 160
++ YG AI+ G L +
Sbjct: 132 YRLCYGPAIAAGALAT 147
>gi|238928097|ref|ZP_04659857.1| possible prepilin peptidase [Selenomonas flueggei ATCC 43531]
gi|238884057|gb|EEQ47695.1| possible prepilin peptidase [Selenomonas flueggei ATCC 43531]
Length = 192
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 19/161 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L++ + DL M+ + +++ L+ + G+ AL V C
Sbjct: 49 MLFTAVLLWLSYLDLRDGMLYDCITLPFALLGLMAS---GVGSISDALLGGALCGVLFYC 105
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
A +GGGDVK +W GW + ++ + G + +LT R
Sbjct: 106 LYIAARGGLGGGDVKFAVGLGLWLGWEAAIIAVWAAFLLGGAAAAFLLLTGRR------- 158
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G +++GG + + G
Sbjct: 159 ---------GRHDGIPFGPFLAVGGYVGFLVGRQLWQLYWG 190
>gi|46580522|ref|YP_011330.1| hypothetical protein DVU2117 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449941|gb|AAS96590.1| membrane protein, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234261|gb|ADP87115.1| peptidase A24A prepilin type IV [Desulfovibrio vulgaris RCH1]
Length = 188
Score = 54.1 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 1/146 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + L+ A ++D+ S IPN ++ + L + + +
Sbjct: 1 MDGIIIPVLGVILLIAVVTDIRSMRIPNWLTFPAMLMGLGYHTAMR-GLDGLLFSAGGLA 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F +MG GDVKL+ + + G +F++ G V +L
Sbjct: 60 LGGALMLLPFILRVMGAGDVKLMAAAGAFLGTRGVLSAFIWTSLAGGLYALVVLLFHLPQ 119
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIA 152
I + + + K+ Y A
Sbjct: 120 LMAILRAVVASVRFMSVTGKLSYIPA 145
>gi|327458569|gb|EGF04919.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK1]
Length = 270
Score = 54.1 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWDLLLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATIFKKFKFK 246
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++P+G A+S+ +I Y
Sbjct: 247 LK--------------EEVPFGPAMSIMAVILYFWG 268
>gi|320008826|gb|ADW03676.1| peptidase A24A prepilin type IV [Streptomyces flavogriseus ATCC
33331]
Length = 263
Score = 54.1 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 24/167 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL------GMDYELIALH 61
+ V+++ V A+ D +P+ +++ + G + L
Sbjct: 111 EAVVWVLLAPVAVLLAVIDRRVHRLPDVLTLPLAAVAAALLGAAALLPGHGGSWTSALLG 170
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVF 119
V +++ + N MG GDVKL + V GW + FL F + G +
Sbjct: 171 GAVLGGFYLLLYRIN-PNGMGFGDVKLALALGVALGWYGWPVLFLGGFAGFLFGALYGAG 229
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
++ +R + IP+G + G L L
Sbjct: 230 LMLLRRAG---------------RRTGIPFGPFMLAGALFGLVSGGL 261
>gi|325698112|gb|EGD39993.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK160]
Length = 270
Score = 54.1 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + A D + I + V +V + F + LLVG ++ +
Sbjct: 127 CLLVSLCLIIAYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWELLFSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATI------- 239
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F F +K ++P+G A+S+ +I Y
Sbjct: 240 -------FKKFKFKLKEEVPFGPAMSIMAVILYFWG 268
>gi|295094254|emb|CBK83345.1| Type II secretory pathway, prepilin signal peptidase PulO and
related peptidases [Coprococcus sp. ART55/1]
Length = 238
Score = 54.1 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 53/146 (36%), Gaps = 7/146 (4%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-------TAFLLGMDYELIA 59
+ + + L D + IP +++ +L ++ + G +
Sbjct: 73 LEAVTVFLFFALLTIITFIDADTMEIPFVLNVCILVLGVISIFTRGGFSLTGGDLSLVSR 132
Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
L ++ + + + + GGGD+KL+ + + GW + ++F + I G +
Sbjct: 133 LIGMICVSLPLFLIVLVIPDGFGGGDIKLMFAAGFFLGWKATVIAFFIGLIIGGCQGVIL 192
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKN 145
+ + + FG + ++
Sbjct: 193 LARRKKGKDDHFAFGPALSVGLMIAT 218
>gi|332188358|ref|ZP_08390083.1| type IV leader peptidase family protein [Sphingomonas sp. S17]
gi|332011587|gb|EGI53667.1| type IV leader peptidase family protein [Sphingomonas sp. S17]
Length = 161
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMGGG 84
D + I +R + + L + G+ + L + V + +F++ F +MGGG
Sbjct: 25 DARTREIADRKNAAIALIAPLWWWASGVPLWPDAMLQIGVAIGLFLLFALAFRVGMMGGG 84
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
DVK++ + A+W + L ++I GGI+++ +L + +
Sbjct: 85 DVKMIAALALWL-PLGPLMRMLLLMSIAGGIVTLAMLIDHRLRRSGSDGAI--------- 134
Query: 145 NKIPYGIAISMGGLISY 161
++PYG+AI+M GL+
Sbjct: 135 -EVPYGVAIAMAGLLIL 150
>gi|323491529|ref|ZP_08096708.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546]
gi|323314105|gb|EGA67190.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546]
Length = 172
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 3/113 (2%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L A+SD IPN + ++++ + + DY + + G+ FI
Sbjct: 3 MVVWIVLFAIAVSDAKEHRIPNYLLLLVILISFINKAFVIQDYNFLLWSFVSGITCFIAA 62
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS---FLFFVAILGGILSVFILT 122
C + +M GDVKLL W G + ++GG ++ L
Sbjct: 63 LCLYFLKVMAPGDVKLLGVIGFWLGSEHILGAVYWIAISSVVIGGFYALLRLA 115
>gi|83589201|ref|YP_429210.1| peptidase A24A, prepilin type IV [Moorella thermoacetica ATCC
39073]
gi|83572115|gb|ABC18667.1| Peptidase A24A, prepilin type IV [Moorella thermoacetica ATCC
39073]
Length = 175
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 4/118 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + ++D S +PN +++ ++ + + + + F++
Sbjct: 6 WLFFLSVTVVGVTDFISHYVPNFITLPLMVAGIFYHLWA----DNWVASIFGASACFLLG 61
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F MGGGDVKL+ + W G + I G ++ + +
Sbjct: 62 LVMFTLGGMGGGDVKLMAAIGAWMGLYGALAVIFVASCIGGVWGLGKLVKQGRLKERL 119
>gi|324991942|gb|EGC23865.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK405]
gi|327471781|gb|EGF17222.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK408]
gi|332363528|gb|EGJ41309.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK1059]
Length = 270
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWDLLLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATI------- 239
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F F +K ++P+G A+S+ +I Y
Sbjct: 240 -------FKKFKFKLKEEVPFGPAMSIMAVILYFWG 268
>gi|310640819|ref|YP_003945577.1| peptidase a24a prepilin type iv [Paenibacillus polymyxa SC2]
gi|309245769|gb|ADO55336.1| Peptidase A24A prepilin type IV [Paenibacillus polymyxa SC2]
Length = 170
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 1/138 (0%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++++ L A ++DL S IPN++++ + LL L G + +
Sbjct: 2 TWMYIVCGVLLAIALVTDLRSMKIPNKLTLPGIAVGLLFNTLFG-GWHGFLFAIAGLGTG 60
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F + +G GDVKL W G ++ S L+ + G I +L R
Sbjct: 61 FGFMLILYWMGAIGAGDVKLFGLIGAWTGAAFAWQSALYSIFFAGIIGIGILLWRRETIM 120
Query: 129 HIPIFGMFVPKSFLMKNK 146
+ + FL ++
Sbjct: 121 RLRRVAFNLGGFFLFRSG 138
>gi|242312119|ref|ZP_04811136.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
gi|242135358|gb|EES21761.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
Length = 166
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 51/165 (30%), Gaps = 14/165 (8%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
V AA DL S IPNR+ + L L+ L + A L +
Sbjct: 1 MTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGLLLP 60
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP--- 131
F+ M GDVKL+ + W G T + L + G + +
Sbjct: 61 FYLVRGMAAGDVKLMLAIGAWVGPTLALHIALATFVVGGAWALAVVAGRGRFRKLLANLR 120
Query: 132 -----------IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+PYG+AI++G L +
Sbjct: 121 HLFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIGTLGVLFAAA 165
>gi|281355356|ref|ZP_06241850.1| peptidase A24A domain protein [Victivallis vadensis ATCC BAA-548]
gi|281318236|gb|EFB02256.1| peptidase A24A domain protein [Victivallis vadensis ATCC BAA-548]
Length = 296
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/167 (10%), Positives = 50/167 (29%), Gaps = 28/167 (16%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE---------LIALHL 62
+ V A+ D +IP+ ++I + + + + + +
Sbjct: 128 YWAMILLAVAASWIDAEHRLIPDALTIPAMCFGVAVSAVCPSVWGIESRLYAPVYALISG 187
Query: 63 LVGLIVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+ + + ++G GDV + + + G +F + + ++ G +
Sbjct: 188 AIPALFLALFAIIGKKLTRKEVLGWGDVTFIAAVGMLLGLPAAFFA-VAAGSLAGTFYGI 246
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ V + KI +G ++ L+
Sbjct: 247 GVAAVLKRPVA--------------RVKIAFGPFLAGAALVWLFAGE 279
>gi|167841422|ref|ZP_02468106.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis
MSMB43]
Length = 179
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 51/169 (30%), Gaps = 14/169 (8%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L V AA DL S IPNR+ + L L+ L + L
Sbjct: 10 IPLCATLLAVVAASIDLASRRIPNRLIALGLVGALIVQCALPGPHNGFVAWLAGAATGAG 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL--------- 121
+ F+ M GDVKL+ + W G T + L + G +
Sbjct: 70 LLLPFYVVRGMAAGDVKLMLAIGAWVGPTLALHIALATFVVGGAWALAVVARRRRLRKLL 129
Query: 122 -----TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+PYG+AI++G L +
Sbjct: 130 ANLRHLFAGAALLRDPSAARAAPGIDSVGTLPYGVAIAIGTLGVLFAAA 178
>gi|152966964|ref|YP_001362748.1| peptidase A24A domain protein [Kineococcus radiotolerans SRS30216]
gi|151361481|gb|ABS04484.1| peptidase A24A domain protein [Kineococcus radiotolerans SRS30216]
Length = 263
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 22/145 (15%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI-----ALHLLVGLIVFIICFCFFAFN 79
D+ +P+ + LL L GL++
Sbjct: 115 IDVDVHRLPDAIVKPAYPVSLLLLVTATALTGEWSRYVHGLIGGAGLLLLYFLLYQLWPG 174
Query: 80 IMGGGDVKLLTSTAVWFGWTP--SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GDVKL ++ GW + + F +LGGI+ V +L R
Sbjct: 175 GMGFGDVKLAGVLGLYLGWWGWEALVVGAFAAFLLGGIVGVGVLLTRRGG---------- 224
Query: 138 PKSFLMKNKIPYGIAISMGGLISYP 162
K++IP+G + G ++
Sbjct: 225 -----RKSRIPFGPFMLAGAWLALL 244
>gi|291563704|emb|CBL42520.1| Type II secretory pathway, prepilin signal peptidase PulO and
related peptidases [butyrate-producing bacterium SS3/4]
Length = 258
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 29/169 (17%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-------LIALHLLVG 65
++ L+ +L+DL +IP+R+ I FL+TA L + L +
Sbjct: 111 ILLTVVLMILSLTDLHGWIIPDRLQIAGCVIFLVTALFLPDPIQRIFGGLFLGLILGGGM 170
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L+V ++ +GGGD+KL T ++ L +L + G +
Sbjct: 171 LLVSLVFDKLTGKESLGGGDIKLFFMTGLYLSSAWEILFYLILSCLFGLGFA-------- 222
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
SF + ++P+G AI+ I GL
Sbjct: 223 --------------SFRKEKRVPFGPAIAAACFIMILYGEKLTGWYTGL 257
>gi|326797325|ref|YP_004315145.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1]
gi|326548089|gb|ADZ93309.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1]
Length = 182
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 22/179 (12%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--------YEL 57
M A+ +I F ++ ++DLF I NR+ +++L +L++A L +
Sbjct: 1 MFDFAMPVILTFASLWVIVTDLFYRRIHNRLVLMLLVLWLVSAALSLITSDENRSALLAD 60
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
L + V ++ FC F MG GDVKL++ +W G +FL A+ GG+L+
Sbjct: 61 FGYTSLGAVGVLLVGFCLFLVGQMGAGDVKLMSILCLWVGVEQQL-TFLVVTALAGGVLA 119
Query: 118 VFI-------------LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+F+ + + S +PYG+AIS+G
Sbjct: 120 LFLPFISLIELAGAKAILQLSERYPSFKIPAPIAFSREGVKGLPYGLAISVGYFYVLIS 178
>gi|298674644|ref|YP_003726394.1| peptidase A24B, FlaK domain-containing protein [Methanohalobium
evestigatum Z-7303]
gi|298287632|gb|ADI73598.1| Peptidase A24B, FlaK domain protein [Methanohalobium evestigatum
Z-7303]
Length = 255
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 15/132 (11%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLL 63
M+ L+++ SDL + +PN++ ML ++ + + + L+
Sbjct: 1 MIGLLKIFFFLPFLLYSCYSDLKTRRVPNKLWSFMLVPGMIFVIYDLINYGFAHLVHLLI 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLT-------------STAVWFGWTPSFLSFLFFVA 110
+ +F + F+FN GG D KL+ P LF +
Sbjct: 61 SFVFIFGFVYVLFSFNAFGGADAKLMIIISIIIPAFPEIDMFGYTLPLNPVPPINLFAFS 120
Query: 111 ILGGILSVFILT 122
+ + + I+
Sbjct: 121 VFANAVILTIIV 132
>gi|84501668|ref|ZP_00999840.1| hypothetical protein OB2597_15740 [Oceanicola batsensis HTCC2597]
gi|84390289|gb|EAQ02848.1| hypothetical protein OB2597_15740 [Oceanicola batsensis HTCC2597]
Length = 163
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 6/157 (3%)
Query: 1 MKESKMVFSAVFLIPPFCL-VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA 59
M V + +FL + ++ + +DL IPN + + F++ + + +E+
Sbjct: 1 MLGLDPVAARLFLPFVLLIGLYVSWTDLKGMRIPNASVVTLALVFVVLGPFV-LPFEIYG 59
Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
L+ ++V ++ F +MG GD K L + A + + +L +
Sbjct: 60 WRLVHLVVVLVLGFALTVAGVMGAGDAKFLAAAA----PYVALVDLRLMFMLLAATMLAA 115
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
T R + +S+ P G A+S
Sbjct: 116 FATHRAAKHTALRRLAPDWESWERSRDFPMGTALSTA 152
>gi|261868724|ref|YP_003256646.1| HopD [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261414056|gb|ACX83427.1| HopD [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 228
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 24/162 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
+ + F + L+ +L D +I + + L A+ + E +V
Sbjct: 83 LQALCFALYGALLIAISLVDWHYRLISPALCQALFTLGLGAAYWQIGTLTLEQSLQSAVV 142
Query: 65 GLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
VF + ++ +G GD L V+ F FLF G + +
Sbjct: 143 FFGVFYAIYHAAKWYYRQEALGRGDYWLALGLGVFL-PAHQFPVFLFLACFFGLLYA--- 198
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ N +P+G +S+ G++
Sbjct: 199 --------------AYAKYQHRTLNAVPFGPFMSLAGVVCLL 226
>gi|170022936|ref|YP_001719441.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII]
gi|169749470|gb|ACA66988.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII]
Length = 140
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
++ ++ ++ L+F SD+ +I N+ I + + ++ + + +++
Sbjct: 2 DVIRLSLMVLIVSQLLFVCYSDIRHRIISNKFVISIACNAIILSL-----VTHHTVSIII 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
++ I + F FN+MGGGDVKL+T+ + S ++ + G ++ V +L R
Sbjct: 57 PIVALFIGYIIFHFNVMGGGDVKLITALLLALTAEQSLNFIIYTAVMGGVVMVVGLLINR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ K +PY +AI+ G L
Sbjct: 117 ---------------VDIQKRGVPYAVAITAGFL 135
>gi|78062908|ref|YP_372816.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383]
gi|77970793|gb|ABB12172.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383]
Length = 157
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 9/154 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + V + L A DL + NR + + + A L + +A H+ G
Sbjct: 1 MLTLVQSVATVLLASLAAQDLRDRRLSNRGVLAFAALYFVAAALARDGFAPLAGHVATGA 60
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ ++ +GGGDVKL + +W G +F + GG+L L
Sbjct: 61 AMLLLFGGMRHAGWIGGGDVKLAAAVFLWAGPALAFP--VLTGVGAGGVLCGVALLASRP 118
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
P+ + +PYG+A+++GG ++
Sbjct: 119 RRAAPVRAV-------ATRGVPYGVALALGGTLA 145
>gi|171317110|ref|ZP_02906313.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
gi|171097744|gb|EDT42571.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
Length = 166
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 2/159 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + A SD+ S I N + + L S +AF + + LVG
Sbjct: 1 MAHPIFSAVFLVWATLVAASDIRSRRISNGLVLAGLASGFASAFFDAGPFGISLPQALVG 60
Query: 66 -LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI + F FF MG DVK+ W G S L +++ G+ +V ++ +
Sbjct: 61 MLIGLVGLFPFFLLRAMGAADVKVFAVLGAWCG-AHSLLGLWVIASLVAGLHAVVLMLLS 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ + + PY + +
Sbjct: 120 RTSPGVLWHRREPTLALGRYRATPYAACLVATAVAWLAY 158
>gi|225570268|ref|ZP_03779293.1| hypothetical protein CLOHYLEM_06364 [Clostridium hylemonae DSM
15053]
gi|225161063|gb|EEG73682.1| hypothetical protein CLOHYLEM_06364 [Clostridium hylemonae DSM
15053]
Length = 230
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 47/130 (36%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L AL+DL IP+ ++ ++AF L + + + +
Sbjct: 88 FFCILAAVALTDLGRREIPDMYCAAVVILAFISAFTLPGLPVWERAAGSLCVSLPFLVVA 147
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
GGGDVKL+ + ++ G + ++ + + G + +L+ R + G
Sbjct: 148 VAVPGAFGGGDVKLMAACGLFLGVKITAVAAAAGILLAGCAGAGLVLSGRRGKRGVLALG 207
Query: 135 MFVPKSFLMK 144
F+
Sbjct: 208 PFLCAGMTAG 217
>gi|320102193|ref|YP_004177784.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644]
gi|319749475|gb|ADV61235.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644]
Length = 323
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 17/133 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------------- 53
+ LV A D +IP+ ++ V + S L+ +
Sbjct: 121 QLVFDAMLVSVLVVATFIDWEYQIIPSPITDVGMASGLVLGTMFPFVRPEPETAATWTQG 180
Query: 54 ---DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+A+ + L+ I+ F MG GD+ LL + + GW + L+F
Sbjct: 181 LLTGLLGLAVGGGIVLVTRILGGWVFRREAMGLGDLTLLAAIGSFLGWRAAILTFFGSAF 240
Query: 111 ILGGILSVFILTV 123
+ G IL+
Sbjct: 241 VGLGHSLFKILSW 253
>gi|224373191|ref|YP_002607563.1| peptidase A24A, prepilin type IV [Nautilia profundicola AmH]
gi|223589719|gb|ACM93455.1| peptidase A24A, prepilin type IV [Nautilia profundicola AmH]
Length = 248
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 50/154 (32%), Gaps = 19/154 (12%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L+ ++ D +P+ ++++ L T+ + ++ + + ++
Sbjct: 106 VFATLLALSMIDFDYKAVPDSLNLLALTLAFFTSTEIMNNFTNALILMGGMSLIRYYVSY 165
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F MG GD+ + + G + ++ AI I
Sbjct: 166 FIKREAMGEGDIIVGGTMGALLGIKLALVALFIGSAIA-------------------IIP 206
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ ++P+ +++G I + S F
Sbjct: 207 SIYNRIKNSDLELPFIPFLALGTFIVWIFSDYFM 240
>gi|164688873|ref|ZP_02212901.1| hypothetical protein CLOBAR_02521 [Clostridium bartlettii DSM
16795]
gi|164602077|gb|EDQ95542.1| hypothetical protein CLOBAR_02521 [Clostridium bartlettii DSM
16795]
Length = 230
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
K + S + + LV ++ D ++ + + + + + L + Y + H
Sbjct: 67 KYEITIDSISYFLLIPFLVIISVIDFRTSFVYDITVVSGIIIQSVVFILNKIPYAELLNH 126
Query: 62 LLVGLIVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+I ++ F + +G GD+ G S F + + I
Sbjct: 127 FEGLIIGILLSFLICKITSALGEGDIGFYGLCCFVLGAKHSLNVFALSFIVTSLFGILII 186
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
L + I +K ++P+ IS+ ++
Sbjct: 187 LKQKKI---------------DLKVRVPFTPFISLATILIML 213
>gi|326565933|gb|EGE16094.1| type IV prepillin peptidase PilD [Moraxella catarrhalis 103P14B1]
gi|326575417|gb|EGE25342.1| type IV prepillin peptidase PilD [Moraxella catarrhalis 101P30B1]
Length = 258
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 23/170 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVG 65
+ A+ +I + + A D ++P+R+ + + L+ + +VG
Sbjct: 104 IIGALSVIFVWFGLGLAGIDYRVQLLPDRLVLPLGMIGLMANGFGVLTTPVDAIFGAVVG 163
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + + + MG GD KLL++ W G + A+ +
Sbjct: 164 FLVLWLINALYRLARRQDGMGLGDAKLLSACGAWLGIWQLPIIVFIAAALGMVAGIII-- 221
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ + +G + M + + +
Sbjct: 222 ----------------QRHRGKASAFAFGPYLIMAAWVVLLFGEYIQAYI 255
>gi|120602161|ref|YP_966561.1| peptidase A24A, prepilin type IV [Desulfovibrio vulgaris DP4]
gi|120562390|gb|ABM28134.1| peptidase A24A, prepilin type IV [Desulfovibrio vulgaris DP4]
Length = 188
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 1/146 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + L+ A ++D+ S IPN ++ + L + + +
Sbjct: 1 MDGIIIPVLGVILLIAVVTDIRSMRIPNWLTFPAMLMGLGYHTAMR-GLDGLLFSAGGLA 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F +MG GDVKL+ + + G +F++ G V +L
Sbjct: 60 LGGALMLLPFILRVMGAGDVKLMAAAGAFLGARGVLSAFIWTSLAGGLYALVVLLFHLPQ 119
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIA 152
I + + + K+ Y A
Sbjct: 120 LMAILRAVVASVRFMSVTGKLSYIPA 145
>gi|282165638|ref|YP_003358023.1| hypothetical protein MCP_2968 [Methanocella paludicola SANAE]
gi|282157952|dbj|BAI63040.1| hypothetical protein [Methanocella paludicola SANAE]
Length = 159
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
D + IPNR++I ++ + L G L +V + + + GGG
Sbjct: 13 IDYRTMRIPNRLTIPLIAAGLALMAARGYPLGPAVLTCIVSY---AYVYGLWKLRMWGGG 69
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF-----ILTVRMITNHIPIFGMFVPK 139
D KL+ + L F+ ++ + + V+
Sbjct: 70 DAKLVLGLFLMASPAYPPLYFIAAYSLCLAAVLLLKHGVYRPAVKSRHAGKGGPLSAEDI 129
Query: 140 SFLMKNKIPYGIAISMGGL 158
+ L + + P G A+ +
Sbjct: 130 ASLREQEEPMGPALLAACV 148
>gi|161524908|ref|YP_001579920.1| peptidase A24A prepilin type IV [Burkholderia multivorans ATCC
17616]
gi|189350342|ref|YP_001945970.1| prepilin peptidase [Burkholderia multivorans ATCC 17616]
gi|160342337|gb|ABX15423.1| peptidase A24A prepilin type IV [Burkholderia multivorans ATCC
17616]
gi|189334364|dbj|BAG43434.1| prepilin peptidase [Burkholderia multivorans ATCC 17616]
Length = 165
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 2/158 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL-HLLV 64
M I + A SD+ I N + I L L+ + + + + L+
Sbjct: 1 MAHLFFAGIFLVWVTLVASSDIRFRNIRNSLVIAGLAGALIGVTVNENPFGISLVQSLIG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
I I F FA +MG DVK+ W G + L F ++ + +++++
Sbjct: 61 ASIGLICFFPLFAMRVMGAADVKVFAVLGAWCG-AQALLGFWIVASLAASLHALWLMVAS 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ S + PY + M
Sbjct: 120 RTSVAALYKRNTPAMSLGGRRATPYAAFLVMPAAAWLL 157
>gi|309778772|ref|ZP_07673545.1| prepilin peptidase transmembrane protein [Ralstonia sp. 5_7_47FAA]
gi|308922480|gb|EFP68104.1| prepilin peptidase transmembrane protein [Ralstonia sp. 5_7_47FAA]
Length = 185
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 10/162 (6%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLV 64
+ A + V A D+ S +PN + + + + G+ L
Sbjct: 7 IDIAGWASVAVLAVLAIALDIRSRRVPNWLVVAGVMLSIALIKFGGVQDLAYDWQDFWLG 66
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G I F +A MG GDVK T + GW +L I G ++ +
Sbjct: 67 GAIAFACFLPLYALGWMGAGDVKFFTVVGLLAGWHGLVAVWLVSSMISGLHALGIMMLRQ 126
Query: 125 MITNHIPI--------FGMFVPKSFLMKNKIPYGIAISMGGL 158
+ + + + IPY +++G L
Sbjct: 127 LDASSPSAWIVMRVCPAVARWDTAQAGRRGIPYAAYMAIGLL 168
>gi|296158791|ref|ZP_06841620.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1]
gi|295890996|gb|EFG70785.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1]
Length = 166
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 2/153 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M L+ A+SD I N + + L + A + + +G
Sbjct: 1 MNVFVGILLFVAWAAVVAISDCRWRRISNSIVVAGLAAAFGCALFQCGPFGISPARAGIG 60
Query: 66 L-IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
I FFA +MG DVK+ W G + ++ G+ ++++L
Sbjct: 61 ALIGLAALLPFFALGVMGAADVKIFAVLGAWCGM-HALPGLWMAASLAAGVHALWLLITT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
+ K PY ++
Sbjct: 120 RTRLAGLVRQSGSTFELAGKASTPYAACLTAAA 152
>gi|226310154|ref|YP_002770048.1| hypothetical protein BBR47_05670 [Brevibacillus brevis NBRC 100599]
gi|226093102|dbj|BAH41544.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
Length = 151
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 51/142 (35%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ V + F +V A +DL S +I + +++ + FLL L + L +
Sbjct: 2 LLSMYVIIPILFVMVVAMYTDLRSRLIYDWLTLPGIVYFLLVHACLHPEKWLSYAMGAIV 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L + + MGGGD+KLL GW + + + G + + +M
Sbjct: 62 LGGISLLMAVISKGQMGGGDIKLLALVGAAVGWQAGLVVLMLTYLLAGVSVLPIWVISKM 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKI 147
+ + +
Sbjct: 122 TGRMKLNREIPLAPFIAGGTSL 143
>gi|251793169|ref|YP_003007897.1| HopD [Aggregatibacter aphrophilus NJ8700]
gi|247534564|gb|ACS97810.1| HopD [Aggregatibacter aphrophilus NJ8700]
Length = 230
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 24/161 (14%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRV--SIVMLGSFLLTAFLLGMDYELIALHL 62
+ + + L ++ D + +I + ++ LG + + E
Sbjct: 83 DIFTAICWACFCSLLFAISVVDGYYRLISPALCQNLFALGLGAAYWQITPLTLEQSLQSA 142
Query: 63 LVGLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
++ VF + + ++ G GD L +F + +FL + G + ++
Sbjct: 143 VIFFAVFSLIYYGAKWYYKQEAFGRGDCWLALGLGTFFSYEQ-LPAFLLLACLSGLVYAL 201
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + IP+G +S+ G++
Sbjct: 202 YDKLNKRHL-----------------TTIPFGPFLSLSGVL 225
>gi|239817410|ref|YP_002946320.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110]
gi|239803987|gb|ACS21054.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110]
Length = 165
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 2/139 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFII 71
+ L+ + D IPN + + + L F
Sbjct: 3 IAFLLWLILVVVYDFRMRRIPNWLVLAGAALAFAALATGAGPLGQDWQAALFGAGAGFAT 62
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F+A +MG GDVK + +W G P+ S +++ G S+ L ++
Sbjct: 63 LLLFYATGLMGAGDVKFAGALGLWVGL-PALASIWIVASLVAGAHSILWLALKRWPFFPR 121
Query: 132 IFGMFVPKSFLMKNKIPYG 150
+ + S + ++ IP G
Sbjct: 122 LALVLAGPSRVPESGIPSG 140
>gi|332365015|gb|EGJ42780.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK355]
Length = 270
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWELLLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATIFKKFKFK 246
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++P+G A+S+ +I Y
Sbjct: 247 LK--------------EEVPFGPAMSIMAVILYFWG 268
>gi|158421905|ref|YP_001523197.1| prepilin peptidase [Azorhizobium caulinodans ORS 571]
gi|158328794|dbj|BAF86279.1| prepilin peptidase [Azorhizobium caulinodans ORS 571]
Length = 155
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + + ++ P LV A SDL IPN V + +L F AFL +D + L
Sbjct: 1 MSPVLLAEAFASILVPVALVAALASDLSRRTIPNIVVLALLLGFAALAFLGYVD--DLPL 58
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L++ V + F F+ +++G GD KL +TA+W T L L A+ +++
Sbjct: 59 RLVLAGAVLCVGFALFSEDVIGAGDAKLAAATALWLDPTQFPLYVLLCGAMGALLVAAAT 118
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ + +PYG+A++ GL +P S L
Sbjct: 119 VARQQGWGGRLA------------RGLPYGVALATAGLALFPYSSL 152
>gi|327467294|gb|EGF12794.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK330]
Length = 270
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWELLLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATIFKKFKFK 246
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++P+G A+S+ +I Y
Sbjct: 247 LK--------------EEVPFGPAMSIMAVILYFWG 268
>gi|260886330|ref|ZP_05897593.1| putative type IV pili prepilin peptidase PilD/XcpA [Selenomonas
sputigena ATCC 35185]
gi|260864049|gb|EEX78549.1| putative type IV pili prepilin peptidase PilD/XcpA [Selenomonas
sputigena ATCC 35185]
Length = 189
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 16/162 (9%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L +L D ++ +R+ + + + G + F+
Sbjct: 43 WLFFAFLWRISLLDWRHGLVFDRLVLPFCVIGIAFSLFSGALPLENFVFAAFLAGGFLYL 102
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ MGGGDVKL + +W G L+ G +L R
Sbjct: 103 LRLVSRGGMGGGDVKLSFALGLWLGLEGVALALFLAFFSGGLAAFCLLLFGREK------ 156
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+I + +++G ++S + GL
Sbjct: 157 ----------RGRRIAFAPFLALGAVLSLLFADDLLAFYGGL 188
>gi|254517635|ref|ZP_05129691.1| peptidase A24A domain-containing protein [Clostridium sp.
7_2_43FAA]
gi|226911384|gb|EEH96585.1| peptidase A24A domain-containing protein [Clostridium sp.
7_2_43FAA]
Length = 249
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 22/162 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL----GMDYELIALHL 62
+ + + L+ + DL S I + +I+ + + + + L
Sbjct: 94 LSFVFYSLLTSLLIVISYIDLDSKYIYSSTTILGVVLAAIYIVVGLYTKDISISNNILGG 153
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+G + + MG GD ++ ++ G + V + G + ++ ++
Sbjct: 154 AIGYGIIYLIVVITK--GMGQGDAEVAGVCGLFIGIKGILVCLFIAVVLGGLVAAIILIF 211
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
K K++I + IS+G ++
Sbjct: 212 ----------------KLKEKKSEIAFSPYISIGSIVYILLG 237
>gi|170755648|ref|YP_001780948.1| type IV leader peptidase family protein [Clostridium botulinum B1
str. Okra]
gi|169120860|gb|ACA44696.1| type IV leader peptidase family protein [Clostridium botulinum B1
str. Okra]
Length = 252
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 58/152 (38%), Gaps = 18/152 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIM 81
DL + + ++++I + ++ + + V L I F M
Sbjct: 111 FIDLDTTDVYSKITISAMIIGVIYILIEKFYFGYGIKTYMYAVLLCTTAIGTIIFTTKGM 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD+ + +++ G+ + ++ LFF I G ++ +F++ ++
Sbjct: 171 GSGDLDIYIVVSLFLGFKITAMT-LFFSFIFGALIGIFLIILKRK--------------- 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ +P+G I+M + S + +
Sbjct: 215 TKKDYMPFGPFIAMASIFSILFGDKVSLLYIS 246
>gi|9587176|gb|AAF89191.1|AF268318_4 PilD [Aggregatibacter actinomycetemcomitans]
Length = 229
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 24/162 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
+ + F + L+ +L D +I + + L A+ + E +V
Sbjct: 84 LQALCFALYGALLIAISLVDWHYRLISPALCQALFTLGLGAAYWQIGTLTLEQSLQSAVV 143
Query: 65 GLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
VF + ++ +G GD L V+ F FLF G + +
Sbjct: 144 FFGVFYAIYHAAKWYYRQEALGRGDYWLALGLGVFL-PAHQFPVFLFLACFFGLLYA--- 199
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ N +P+G +S+ G++
Sbjct: 200 --------------AYAKYQHRTLNAVPFGPFMSLAGVVCLL 227
>gi|332670506|ref|YP_004453514.1| Prepilin peptidase [Cellulomonas fimi ATCC 484]
gi|332339544|gb|AEE46127.1| Prepilin peptidase [Cellulomonas fimi ATCC 484]
Length = 269
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 25/174 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIV------MLGSFLLTAFLLGMDYELIALHLLV 64
L V L D+ +P+ + + L + D+ L
Sbjct: 110 ALLYLVAISVALTLIDIDVRRLPDVIVLPSYLVSTALLALAAANPGGDADWASFGRALAG 169
Query: 65 GLIVFIICFCFFAF--NIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFI 120
G I+ F + G GDVKL ++ GW S F ++GG+ S+ +
Sbjct: 170 GGILLAGYFVVWRVYPPGTGFGDVKLAGVLGLYLGWCGWGSVAVGWFSGYLVGGVFSIAL 229
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ K +IPYG + +G I A +G+
Sbjct: 230 VVAGRAG---------------RKTRIPYGPWMILGAWIGIIAGETVWSAYLGV 268
>gi|15615597|ref|NP_243901.1| late competence protein required for processing and translocation
[Bacillus halodurans C-125]
gi|10175657|dbj|BAB06754.1| late competence protein required for processing and translocation
[Bacillus halodurans C-125]
Length = 162
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 19/170 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLV 64
+ V L +SDL +IP+R+ + F+L L + +V
Sbjct: 9 MELLVALALVSLFSIIFVSDLVYMIIPDRIILFFAILFVLFRATLAPLNPWWDAWAGAVV 68
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G I+ I + + N +GGGDVKL T GW + ++ + V ++ R
Sbjct: 69 GYILLFIVYLIY-PNGIGGGDVKLFTVLGFVLGWKLTLVAIMLSSLCGAIGGGVGMMLGR 127
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + IP+G I +G L +Y +
Sbjct: 128 IK----------------RREPIPFGPFIILGSLTAYLYGDALIQWYVRW 161
>gi|254466366|ref|ZP_05079777.1| peptidase A24A, prepilin type IV [Rhodobacterales bacterium Y4I]
gi|206687274|gb|EDZ47756.1| peptidase A24A, prepilin type IV [Rhodobacterales bacterium Y4I]
Length = 165
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 4/154 (2%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M+ AL+DL IPN V+ ++ + +
Sbjct: 1 MQFPAHAALWFLPFVLPLCYTVALTDLRGMRIPNWAVDVLAVIYVAVGAIAMPSWADYGW 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
HLL + F F++ +G GD K + A + + I L
Sbjct: 61 HLLHLPAGIGLGFLFYSAGAVGAGDAKFAGAAAP----FFALGDLRLLMIIFAATLLAGF 116
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
R+ +S+ P G+ +
Sbjct: 117 TAHRIAKYTPLRQLAPQWQSWETGKSFPMGLCLG 150
>gi|187780056|ref|ZP_02996529.1| hypothetical protein CLOSPO_03652 [Clostridium sporogenes ATCC
15579]
gi|187773681|gb|EDU37483.1| hypothetical protein CLOSPO_03652 [Clostridium sporogenes ATCC
15579]
Length = 252
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 18/152 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIM 81
DL + + ++ +I + ++ + + V L +I F M
Sbjct: 111 FIDLDTTDVYSKTTISAMIIGVIYILIEKFYFGYGIKTYIYAVLLCTMVIGTIIFTTKGM 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD+ + +++ G+ + ++ F I G ++ + ++ +
Sbjct: 171 GSGDLDVYIVVSLFLGFKITAMTIFF-SFIFGALIGILLIVSKRK--------------- 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ IP+G I++ + S + +
Sbjct: 215 SRKDYIPFGPFIAIASIFSILFGDKVFLFYVS 246
>gi|310829690|ref|YP_003962047.1| prepilin peptidase [Eubacterium limosum KIST612]
gi|308741424|gb|ADO39084.1| prepilin peptidase [Eubacterium limosum KIST612]
Length = 257
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 46/128 (35%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + V L+ L D + IPN + I ++ + F+ + + + +
Sbjct: 105 LQAVVGFAVAAILLAVTLIDFDTMTIPNGLVIALIIPVAASYFVFLEPSLISRVIGVFVI 164
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
V ++ GGGDVKL+ GW + L+ + + G + + ++
Sbjct: 165 SVPMLVLSLVIPGGFGGGDVKLMAVAGFLLGWPCTLLATFIGLVLGGIVGVIKLIRKSGE 224
Query: 127 TNHIPIFG 134
+
Sbjct: 225 KHMAFGPY 232
>gi|50119732|ref|YP_048899.1| hypothetical protein ECA0787 [Pectobacterium atrosepticum SCRI1043]
gi|49610258|emb|CAG73701.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
Length = 183
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 19/168 (11%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI--------ALHLLVG 65
+ CL++ +DL I N+ +++L +L + + + L
Sbjct: 12 LLMGCLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGGLDRLALQKTLWALPGA 71
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL--------- 116
V ++ F F +G GDVKL++ +W G + + G +
Sbjct: 72 AAVLVVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIVFVMVTALAGGVLALSLPLLNTV 131
Query: 117 --SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+V + M + IPYG+AI+ G +
Sbjct: 132 PTAVAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVLI 179
>gi|149200855|ref|ZP_01877830.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035]
gi|149145188|gb|EDM33214.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035]
Length = 166
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 6/152 (3%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
++ ALSDL IPN + ++G FL+ + + A L ++ +
Sbjct: 13 FLPFVLPVCIWVALSDLRRMKIPNTAVLTLVGIFLVIGLMT-LPLVDYAWRLSHLAVMLV 71
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
A +MG GD K + + A + + I L +T R I
Sbjct: 72 AGIAMNAVRLMGAGDAKFIAAAAPFV----ALGDAATLAFIFAATLLGAFVTHRAIMYSP 127
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+S+ K P G A+ G L Y
Sbjct: 128 LRRLAPDWQSWHAGKKFPMGFALG-GTLAIYL 158
>gi|114566089|ref|YP_753243.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337024|gb|ABI67872.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 250
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 61/161 (37%), Gaps = 18/161 (11%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+K + + ++ LV AA +D+ +IP+ +S+ L L F+ + +
Sbjct: 90 LKWGFSMQTFSGVVLTAILVAAAFTDINKGIIPDTLSLTGLLLGLGLGFVTIGIKQSLL- 148
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
VG + + + MGGGD+KL + G++ + + L + G V +
Sbjct: 149 -GAVGFGLIFLFIALISRGGMGGGDIKLAALIGAFTGFSGALMVILISSWLGGLWAVVLL 207
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + +K I + +++ + +
Sbjct: 208 IQGQ----------------AGLKTAIKFAPFLAIAAWLVW 232
>gi|318606987|emb|CBY28485.1| leader peptidase (Prepilin peptidase); N-methyltransferase
[Yersinia enterocolitica subsp. palearctica Y11]
Length = 153
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ + ++ A D+ ++P+ +++ +L L+ L L + G +
Sbjct: 6 LLFLWAIIALAFIDIEHYILPDCITLPLLWCGLVININNSFSPLSLSVLGAVTGYVFLWF 65
Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ F + MG GD KL+ + WFG L +
Sbjct: 66 PYWIFKVFKNIDGMGYGDFKLMAALGAWFGVIAIPFLVLLSSCFGIIAYIII 117
>gi|87299153|emb|CAJ76214.1| competence transcription factor C [Bacillus sp. Bt 35]
Length = 186
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 36/108 (33%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I L + + + ++ + + + C +GG
Sbjct: 79 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
GD+KLL+ G F+ + I R+
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRIEVRKPL 186
>gi|325686514|gb|EGD28542.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK72]
Length = 270
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V ++ + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLLFWLGRMAVTFFTNEFNWELLLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATIFKKFKFK 246
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++P+G A+S+ +I Y
Sbjct: 247 LK--------------EEVPFGPAMSIMAVILYFWG 268
>gi|302553416|ref|ZP_07305758.1| type IV peptidase [Streptomyces viridochromogenes DSM 40736]
gi|302471034|gb|EFL34127.1| type IV peptidase [Streptomyces viridochromogenes DSM 40736]
Length = 251
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 47/166 (28%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----L 62
V+L+ V + D +P+ +++ G+ L L + E
Sbjct: 99 ELGVWLLLAPVGVLLTVVDFRVRRLPDPLTLPFAGAALALLGLTALVPEHAGHWTTALLG 158
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ L MG GDVKL T GW L F +LG + +
Sbjct: 159 SLALGGGYFVLFLINPAGMGFGDVKLALGTGAVLGWYGWPTVMLGTFAGFLLGALYGGAL 218
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ R K I +G + G +
Sbjct: 219 VVARRA---------------SRKTAIAFGPFLIAGAFLGLLVGAY 249
>gi|251772251|gb|EES52821.1| putative type IV prepilin peptidase [Leptospirillum
ferrodiazotrophum]
Length = 261
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 14/151 (9%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA--FLLGMDYELIALHLLVGLIVFI 70
LI + L D +P+ ++I + +L L G I
Sbjct: 105 LIFFSFALPLTLIDSRYKRLPHNLTIPCMACGILLGGVAHGSHGLLDALFGALAGFIPVA 164
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ + +G GD L++ + G L L A + LT +
Sbjct: 165 LIATAY-PRGIGMGDAFWLSAIGSFTGPGALTLVLLVASATGIVATLIVYLTKHRNSALS 223
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+P+G +S+GG+++
Sbjct: 224 LFSLA-----------MPFGPFLSLGGILTL 243
>gi|163733534|ref|ZP_02140977.1| hypothetical protein RLO149_17823 [Roseobacter litoralis Och 149]
gi|161393322|gb|EDQ17648.1| hypothetical protein RLO149_17823 [Roseobacter litoralis Och 149]
Length = 165
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 4/154 (2%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M S ++ A +DL I N+ + + +++ + E
Sbjct: 1 MAFSSSAALWFLPFVLPLCLYVAYTDLALMKIINKAVVTLGAIYVILGPFVLPSIEAYLW 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
I + F A MG GD K + A + L F I L +
Sbjct: 61 GFAQFAIALGVGFVLNAIGAMGAGDAKFIAFAAPFIAPGDLPRVVLLFTCI----LLAAL 116
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
LT R S+ + P G+A+
Sbjct: 117 LTHRGARASRLRDLAPDWVSWSQGKRFPLGLALG 150
>gi|332710381|ref|ZP_08430329.1| aspartic peptidase, MEROPS family A24A [Lyngbya majuscula 3L]
gi|332350930|gb|EGJ30522.1| aspartic peptidase, MEROPS family A24A [Lyngbya majuscula 3L]
Length = 277
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 43/160 (26%), Gaps = 31/160 (19%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------------- 53
+ + L+ AL D+ + +PN ++ L + L+ G
Sbjct: 107 QTLGYWAFLSWLLTLALIDIDTMTLPNSLTQSGLVAGLVFQGTTGFLQGSQPIAIIPQLM 166
Query: 54 -DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
L + + ++ F + MGGGD KL W GW L+
Sbjct: 167 TGVVGAVLGIWLFDLIAFGGSIAFGQSAMGGGDAKLAAMMGAWLGWKYLLLASFIA---- 222
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
K +P+G
Sbjct: 223 ------------CGVGAFAGGAAIALGWINRKQPMPFGPF 250
>gi|326790821|ref|YP_004308642.1| peptidase A24A prepilin type IV [Clostridium lentocellum DSM 5427]
gi|326541585|gb|ADZ83444.1| peptidase A24A prepilin type IV [Clostridium lentocellum DSM 5427]
Length = 222
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 28/176 (15%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI------AL 60
V +++ + LVF A DL ++P+++ V LG + + G+ +
Sbjct: 60 VEVWLYMFLIWDLVFLAWFDLKYMLLPSKMIYVGLGGGIAFRLIQGIILNNYGLIINGLI 119
Query: 61 HLLVGLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+ G I+F++ F +G GDV+L+ + G L + +
Sbjct: 120 GAVSGYILFLLLFYGSKWLLKKEGLGFGDVRLMALIGFFIGVELLPLMLIIASFSAVLVG 179
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ + + P+G + +G L+ +
Sbjct: 180 ACLYVIRKQ------------------SEAFPFGPFLCIGTLLIILFQDEVIHFYL 217
>gi|226948597|ref|YP_002803688.1| type IV leader peptidase family protein [Clostridium botulinum A2
str. Kyoto]
gi|226842280|gb|ACO84946.1| type IV leader peptidase family protein [Clostridium botulinum A2
str. Kyoto]
Length = 252
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIM 81
DL + + ++++I + ++ + + V L I F M
Sbjct: 111 FIDLDTTDVYSKITISAMIIGVIYILIEKFYFGYGIKTYMYAVLLCTTAIGTIIFTTEGM 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD+ + +++ G + ++ LFF I G ++ +F++ +
Sbjct: 171 GSGDLDIYIVVSLFLGLKITAMT-LFFSFIFGALIGIFLIISKRK--------------- 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ +P+G I+M + S + +
Sbjct: 215 TKKDYMPFGPFIAMASIFSILFGDKVSLLYIS 246
>gi|332286658|ref|YP_004418569.1| type IV prepilin-like proteins leader peptide processing enzyme
[Pusillimonas sp. T7-7]
gi|330430611|gb|AEC21945.1| type IV prepilin-like proteins leader peptide processing enzyme
[Pusillimonas sp. T7-7]
Length = 254
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 24/169 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLVGL 66
+ + + L+ A D + ++P+ ++ ML L A++ + + G
Sbjct: 103 ACLLAVAAVMLMLLAHIDARTRLLPDALTQPMLWLGLGAAWIGWGVVPVHDAVAGAMAGY 162
Query: 67 IVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ MG GD+KLL + W GW + L + G + ++
Sbjct: 163 GFLWLLLQGFRLLRGIEGMGYGDLKLLAALGAWLGWQ-ALPWVLLAACLTGIVFAML--- 218
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
K+ P+G ++ G+ + + +
Sbjct: 219 --------------RNKTLFPSGAYPFGPFLAAAGVAVFMAAPGLHLYF 253
>gi|291288190|ref|YP_003505006.1| peptidase A24A domain protein [Denitrovibrio acetiphilus DSM 12809]
gi|290885350|gb|ADD69050.1| peptidase A24A domain protein [Denitrovibrio acetiphilus DSM 12809]
Length = 259
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 21/140 (15%)
Query: 27 LFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF----AFNIMG 82
+IP+ + + +G LL A+++ D VG + I + MG
Sbjct: 125 FECGIIPDSLIVFGIGGALLMAYIVREDVRFAVYGAAVGFMALFIPALLYRLIRKREGMG 184
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GD+KL+ + G F + I ++ R
Sbjct: 185 FGDIKLVAVAGAFLGVKSIFFVVFASALMGAVIGIIWQFAARKRDIM------------- 231
Query: 143 MKNKIPYGIAISMGGLISYP 162
IP+G IS LI
Sbjct: 232 ----IPFGPFISAAALIYLF 247
>gi|15678449|ref|NP_275564.1| hypothetical protein MTH421 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|3219875|sp|O26521|Y421_METTH RecName: Full=Uncharacterized protein MTH_421
gi|2621485|gb|AAB84927.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
Length = 385
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELI 58
++ I +A+ SD+ +IPNR++ ++G LL + D +
Sbjct: 1 MILMVIELLSVFIALLACFYASYSDIKRGIIPNRLTFPVIGLGLLLNGARALMESDPWIF 60
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
+ +F + + + GGDVKL T+ + PS +S+ F
Sbjct: 61 IYTAIFTAGIFALGYILWRMVAWAGGDVKLFTAVTSLLPFQPSLVSYSFLGTAF 114
>gi|17549312|ref|NP_522652.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|17431564|emb|CAD18242.1| probable prepilin peptidase transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 168
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 3/116 (2%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFIICFCFFAFNIMG 82
SDL S +PN + V L ++ + L G I +A MG
Sbjct: 23 SDLRSRRVPNWLVAVGLVLSIVLVKFGSVVALAYDWRDVWLGGAIALAGFLPLYALGWMG 82
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
GDVK + GW ++ ++L G+ ++ IL +R P M +
Sbjct: 83 AGDVKFFAVAGLLAGWHG-LVAIWLVSSVLAGVHALAILLLRRADASAPAGWMLMR 137
>gi|326576495|gb|EGE26403.1| type IV prepillin peptidase PilD [Moraxella catarrhalis CO72]
Length = 258
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 23/170 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVG 65
+ A+ +I + + A D ++P+R+ + + L+ + +VG
Sbjct: 104 IIGALSVIFVWFGLGLAGIDYRVQLLPDRLVLPLGMIGLIANGFGVLTTPVDAIFGAVVG 163
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + + + MG GD KLL++ W G + A+ +
Sbjct: 164 FLVLWLINALYRLARRQDGMGLGDAKLLSACGAWLGIWQLPIIVFIAAALGVVAGIII-- 221
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ + +G + M + + +
Sbjct: 222 ----------------QRHQGKASAFAFGPYLIMAAWVVLLFDEYIQAYI 255
>gi|324996166|gb|EGC28076.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK678]
Length = 270
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWELLLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATIFKKFKFK 246
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++P+G A+S+ +I Y
Sbjct: 247 LK--------------EEVPFGPAMSIMAVILYFWG 268
>gi|297559851|ref|YP_003678825.1| type II secretory pathway prepilin signal peptidase PulO and
related peptidase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844299|gb|ADH66319.1| Type II secretory pathway prepilin signal peptidase PulO and
related peptidase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 324
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 20/163 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIV------MLGSFLLTAFLLGMDYELIALHLL 63
L V A+ DL +P+ V + +L + G D + A L+
Sbjct: 167 LAVLWLTAVGVPLAVIDLRVMRLPDAVVLPAYPVAAVLIGLAVLLPPEGPDTDRAAGALV 226
Query: 64 VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++V ++ + + + +G GDVKL TA++ GW L L V S+ +
Sbjct: 227 SMVLVTVLYWLLWRVHSAGLGFGDVKLSGLTALYAGWAAGTLGALVAVFWAFAAFSLVGV 286
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + ++ P G + L +
Sbjct: 287 VL------------MALRRLTRRDPFPLGPFMLAAALATVLTG 317
>gi|302875787|ref|YP_003844420.1| Prepilin peptidase [Clostridium cellulovorans 743B]
gi|307689222|ref|ZP_07631668.1| Prepilin peptidase [Clostridium cellulovorans 743B]
gi|302578644|gb|ADL52656.1| Prepilin peptidase [Clostridium cellulovorans 743B]
Length = 248
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 22/162 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT----AFLLGMDYELIALHL 62
+ S F+I L+ AL D + + ++ + +G L+ + L L
Sbjct: 93 LVSIKFIIMIEFLIVIALIDYDTKYVYSKNTYSGMGIGLILDIYLQAFNKICIIDYLLGL 152
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
L+G++ MG GD+++ ++ GW L+ F + I I + +++
Sbjct: 153 LLGIVTIGTIVAVTK--AMGAGDIEISALIGIFVGWKLMLLTIFFSLVIGSVISIILVIS 210
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
R +K++I +G ++MG +IS
Sbjct: 211 NRR----------------GLKDEIAFGPYLAMGSIISCLYG 236
>gi|182625545|ref|ZP_02953316.1| Type IV leader peptidase family protein [Clostridium perfringens D
str. JGS1721]
gi|177909233|gb|EDT71698.1| Type IV leader peptidase family protein [Clostridium perfringens D
str. JGS1721]
Length = 247
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ +++ L+ + D + + + + ++ A + + L+ +GL++
Sbjct: 96 TVKYIVLITFLIVISFIDYDTQDVYAVTTYPAVILGIIFALIEKFYFGENLLNYFMGLVI 155
Query: 69 FIICFCFFAF--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + MG GD+++ ++ GW + ++ I G I + IL +
Sbjct: 156 SALVIFLISKLTGAMGSGDIEIHAIAGIFLGWKLAIINIFLSFIIGGIIAVLAILFKQKK 215
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I +G AI + +I + G+
Sbjct: 216 K----------------GDYIAFGPAIGISTIILIFFGNIIIPIYFGV 247
>gi|87299155|emb|CAJ76215.1| competence transcription factor C [Bacillus sp. Bt 49]
Length = 186
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 36/108 (33%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I L + + + ++ + + + C +GG
Sbjct: 79 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
GD+KLL+ G F+ + I R+
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRIEVRKPL 186
>gi|296122092|ref|YP_003629870.1| peptidase A24A domain protein [Planctomyces limnophilus DSM 3776]
gi|296014432|gb|ADG67671.1| peptidase A24A domain protein [Planctomyces limnophilus DSM 3776]
Length = 434
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 57/211 (27%), Gaps = 69/211 (32%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG----------------- 52
FL+ L+ A L D +IP+ V++ M L + G
Sbjct: 145 VYFLVLIEGLLVATLIDFDLQIIPDGVTVPMAIFGLAIPIITGTTALWPVWFHDPELIRT 204
Query: 53 --------------------------------MDYELIALHLLVGLIVFIICFCFFAFNI 80
+ + + +V I+ F
Sbjct: 205 LGLFFPEGMLSWWETWSIPSWISAWPRWHAIVFSLTGLVVGAGLIWLVRILGHWVFGQEA 264
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
MG GDV L ++ GW S + F + L+V
Sbjct: 265 MGFGDVILGGVIGIYVGWQASIVVFFLAPVVALLSLAVTF-------------------P 305
Query: 141 FLMKNKIPYGIAISMGGLISYP-DSYLFKVA 170
++ +PYG +S+ LI + A
Sbjct: 306 WIKNRAMPYGPFLSIATLIVILGWQPIMTRA 336
>gi|325689272|gb|EGD31278.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK115]
Length = 270
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 18/159 (11%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
A + + D + I + V +V + F + LLVG ++
Sbjct: 124 ASACLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWELLFSLLVGAGLY 183
Query: 70 IICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + ++ G GD+ L + + WF + + + G IL + +
Sbjct: 184 SLIYFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATI---- 239
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F F +K ++P+G A+S+ +I Y
Sbjct: 240 ----------FKKFKFKLKEEVPFGPAMSIMAVILYFWG 268
>gi|260426147|ref|ZP_05780126.1| peptidase A24A prepilin type IV [Citreicella sp. SE45]
gi|260420639|gb|EEX13890.1| peptidase A24A prepilin type IV [Citreicella sp. SE45]
Length = 165
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 6/151 (3%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
++ + +D+ I N+ ++++L F++ + ++ + +
Sbjct: 15 FVLPICLYVSFTDMRELRITNQANLLLLLVFMVVGAFA-LPFDAYLWRYTHLAVALVAGI 73
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
A IMG GD K + + A + F +A+L + L+ R+
Sbjct: 74 ALNAGGIMGAGDAKFIAAAAPFV----HLGDLRFLMALLAASILAAFLSHRIAKLSRLSR 129
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
KS+ N+ P G+A+ G L Y +
Sbjct: 130 LAPDWKSWSSGNRFPMGMALG-GTLALYLVT 159
>gi|85373133|ref|YP_457195.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594]
gi|84786216|gb|ABC62398.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594]
Length = 167
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
+DL S I N ++ + L + G+D + +A L V LI F IC FA MG
Sbjct: 23 FTDLRSRQIGNWLNGAIALGAPLFWWSSGLDLWPGVAWQLGVALITFAICAGLFAMRWMG 82
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GGDVKLLT+ A+W F + + G + +F + + +
Sbjct: 83 GGDVKLLTALALWIAPALFFNLIVIMALLGGVLTLLFGMWH-------------LIRRQR 129
Query: 143 MKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+ IPYG+AIS GL ++ F +A ++A
Sbjct: 130 ERLAIPYGVAISAAGLWI-LTTHYFPLAQASIAA 162
>gi|282898260|ref|ZP_06306251.1| Peptidase A24A, prepilin type IV [Raphidiopsis brookii D9]
gi|281196791|gb|EFA71696.1| Peptidase A24A, prepilin type IV [Raphidiopsis brookii D9]
Length = 234
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 15/130 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--------DYELI 58
+ + + + L+ +L D + +P ++ L L+ LG +
Sbjct: 100 LLTIGYWVFCSWLLALSLIDWETMTLPGSLTKSGLVLGLIFQTTLGYVAHNTWSSAIGQL 159
Query: 59 ALHLLVGLIVFII-------CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ ++ + F F+ +MGGGD KL W GW ++
Sbjct: 160 IWGIGGMVLGLWLFDIITSLGFLFYGKPVMGGGDGKLAAMMGAWLGWQYLLVASFIACFS 219
Query: 112 LGGILSVFIL 121
I +L
Sbjct: 220 GVLIGCGQLL 229
>gi|88854697|ref|ZP_01129363.1| Peptidase A24A-like protein [marine actinobacterium PHSC20C1]
gi|88815858|gb|EAR25714.1| Peptidase A24A-like protein [marine actinobacterium PHSC20C1]
Length = 267
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 22/156 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL---- 66
FL + AL DL + +PN++ + + L +
Sbjct: 108 AFLYLAAISIALALIDLDTHTLPNKIVLPSIVVGFALLALASFGTGNWGALVGAVAGAAA 167
Query: 67 -IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTV 123
VF + MG GDVKL ++ GW F +LGG+ ++ +L +
Sbjct: 168 LFVFYFVVALISPRGMGMGDVKLAAVLGLYLGWLGWGVLAVGAFAAFLLGGVFAIALLLI 227
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ IP+G + G +
Sbjct: 228 GRA---------------RRRTAIPFGPWMIAGTWL 248
>gi|171913061|ref|ZP_02928531.1| leader peptidase (prepilin peptidase) [Verrucomicrobium spinosum
DSM 4136]
Length = 388
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 17/102 (16%)
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
MG GD+ LL + GW + + + I V L +
Sbjct: 295 VLIPREAMGYGDIYLLAMIGSFLGWQAVLFTVVAASVLGSIIGVVPRLFGKTEW------ 348
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSY-LFKVALMGL 174
+KIP+G ++ G +I L + + L
Sbjct: 349 ----------SSKIPFGPYLAGGAMIWLFYGPQLVEWYMNRL 380
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE------LIALHLL 63
++ I L+ D+ ++P+ ++ L L+ +++ + L
Sbjct: 116 ILYWIFAALLIAGTFIDIDHYILPHEITFGGLAVGLIGSWIEPQLMGEFIRSRGLVASLA 175
Query: 64 VGLIVFIICFCFFAFNIMGGGDVK 87
I + + M G +K
Sbjct: 176 GACIGATLIWVIIQLGKMAFGRIK 199
>gi|253990748|ref|YP_003042104.1| Pilin biogenesis protein PilD [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211639079|emb|CAR67691.1| Pilin biogenesis protein PilD [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782198|emb|CAQ85362.1| Pilin biogenesis protein PilD [Photorhabdus asymbiotica]
Length = 224
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 22/154 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVF 69
+ LI + L+ + D+ ++P+ ++ +L LL + E + G ++
Sbjct: 69 IVLIFIWMLIILSFIDVKIKLLPDIINYPLLWLGLLLNLNQTFVSIEQAVTGAIAGYLIL 128
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F +G GD KL+ + + W G + +F ++ G I +++ +R
Sbjct: 129 WSLYWLFRIFCHKEGLGYGDFKLMAAISAWLGI-GAIPLLMFLSSLFGVIGCLWMWRIRG 187
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+G I++ +I
Sbjct: 188 NYQESVA----------------FGPYIAISAII 205
>gi|187479516|ref|YP_787541.1| type 4 prepilin-like protein leader peptide processing enzyme
[Bordetella avium 197N]
gi|115424103|emb|CAJ50656.1| type 4 prepilin-like protein leader peptide processing enzyme
[Bordetella avium 197N]
Length = 250
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + L+ A D S ++P+ +++ +L + LL + L G
Sbjct: 103 ALCAMAYCLVLLVLAWVDCRSYLLPDALTLPLLWAGLLVNIDGAITPLPHAVLGAAAGYG 162
Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSF 105
V + + F MG GD KL + W G
Sbjct: 163 VLWLFYQMFKLCTGREGMGFGDFKLTAALGAWLGLGMLGPVM 204
>gi|188025353|ref|ZP_02958337.2| hypothetical protein PROSTU_00044 [Providencia stuartii ATCC 25827]
gi|188023913|gb|EDU61953.1| hypothetical protein PROSTU_00044 [Providencia stuartii ATCC 25827]
Length = 213
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 21/159 (13%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
+++ +F I +V + D+ +P+ + +L L+ + A++ +
Sbjct: 52 DELIIVILFSIFFNLIVCLFIIDMKIGYLPDILVYPLLWVGLVYQVCSEQGNVVSAIYAV 111
Query: 64 VGLIVFIICFCFFAFNI-----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+ + I+ I MG GD KL+ + A W G F I G
Sbjct: 112 ITSYLSIMLLTVIMEKIRQSPQMGRGDFKLIAACAAWLGLMNLPQFFALAAGIGGLHYWA 171
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
L R +IP+G AI +
Sbjct: 172 IYLRHR----------------HKAIARIPFGPAIILSA 194
>gi|84385686|ref|ZP_00988717.1| hypothetical protein V12B01_26169 [Vibrio splendidus 12B01]
gi|84379666|gb|EAP96518.1| hypothetical protein V12B01_26169 [Vibrio splendidus 12B01]
Length = 146
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 14/153 (9%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
LI V+ + +D I N +++L + + + ++ L+V
Sbjct: 1 MYLLILVIVCVYVSATDFLYRKIQNHTLLILLFLQCFLSP--------LDIQIMSFLLVL 52
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+A +G GD+K ++ +F+ G + ++++ ++I+
Sbjct: 53 GGGLIVYALIWIGAGDIKYAAVLSLTIPLNDLLWAFVMTAFAGGFLAVIYLVYNKLISKR 112
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ K+ + IPYGIAIS+G +
Sbjct: 113 LVR------KTSNGQQGIPYGIAISVGFYLVIL 139
>gi|324112001|gb|EGC05980.1| leader peptidase hopD [Escherichia fergusonii B253]
gi|325498887|gb|EGC96746.1| bifunctional prepilin peptidase HopD: leader peptidase; methyl
transferase (General Secretory Pathway) [Escherichia
fergusonii ECD227]
Length = 116
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 19/120 (15%)
Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
+ + ++G F + + + +G GDVK L + W W
Sbjct: 1 MFYQICHPDNLADALWGAIIGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWAF 60
Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ G + + +L +KN +P+G ++ G +
Sbjct: 61 LPRLVFLAASFACGAVVIGLLMRGKE---------------SLKNPLPFGPYLATAGFVV 105
>gi|168213198|ref|ZP_02638823.1| Type IV leader peptidase family protein [Clostridium perfringens
CPE str. F4969]
gi|170715308|gb|EDT27490.1| Type IV leader peptidase family protein [Clostridium perfringens
CPE str. F4969]
Length = 247
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ +++ L+ + D + + + + ++ A + + L+ +GL++
Sbjct: 96 TVKYIVLITFLIVISFIDYDTQDVYAVTTYPAVILGIIFALIEKFYFGENLLNYFMGLVI 155
Query: 69 FIICFCFFAF--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + MG GD+++ ++ GW + ++ I G I + IL +
Sbjct: 156 SALVIFLISKLTGAMGSGDIEIHAIAGIFLGWKLAIINIFLSFIIGGIIAVLAILFKQKK 215
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I +G AI + +I + G+
Sbjct: 216 K----------------GDYIAFGPAIGISTIILIFFGNIIIPIYFGV 247
>gi|148379295|ref|YP_001253836.1| type IV leader peptidase family protein [Clostridium botulinum A
str. ATCC 3502]
gi|153931410|ref|YP_001383670.1| type IV leader peptidase family protein [Clostridium botulinum A
str. ATCC 19397]
gi|153935217|ref|YP_001387219.1| type IV leader peptidase family protein [Clostridium botulinum A
str. Hall]
gi|148288779|emb|CAL82863.1| putative type IV prepilin signal peptidase [Clostridium botulinum A
str. ATCC 3502]
gi|152927454|gb|ABS32954.1| type IV leader peptidase family protein [Clostridium botulinum A
str. ATCC 19397]
gi|152931131|gb|ABS36630.1| type IV leader peptidase family protein [Clostridium botulinum A
str. Hall]
Length = 255
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIM 81
DL + + ++++I + ++ + + V L I F M
Sbjct: 111 FIDLDTTDVYSKITISAMIIGVIYILIEKFYFGYGIKTYMYAVLLCTTAIGTIIFTTEGM 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD+ + +++ G + ++ LFF I G ++ +F++ +
Sbjct: 171 GSGDLDIYIVVSLFLGLKITAMT-LFFSFIFGALIGIFLIISKRK--------------- 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ +P+G I+M + S + +
Sbjct: 215 TKKDYMPFGPFIAMASIFSILFGDKVSLLYIS 246
>gi|87308904|ref|ZP_01091042.1| hypothetical protein DSM3645_19143 [Blastopirellula marina DSM
3645]
gi|87288247|gb|EAQ80143.1| hypothetical protein DSM3645_19143 [Blastopirellula marina DSM
3645]
Length = 178
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++ A DL S +PN +++ L LL + + LL L+ F
Sbjct: 7 VAIILVALFTAIAFYVDLTSGKLPNWLTMPALLIGLLFQ-SAVNGWGGLQHALLGALVGF 65
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL------TV 123
++ F F GGGDVK + + WFG L F+ + I +
Sbjct: 66 VLLFILFIIGGGGGGDVKFMAALGAWFGPILILLVFVASAVLALIITIAIFVGKMMFRAK 125
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
K + + IPYG+ + + I
Sbjct: 126 SDNAEPGETGDSTQKKLDIARQTIPYGVPVCLASWII 162
>gi|323350749|ref|ZP_08086409.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis VMC66]
gi|322123029|gb|EFX94728.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis VMC66]
Length = 270
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTSEFNWELLLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATIFKKFKFK 246
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++P+G A+S+ +I Y
Sbjct: 247 LK--------------EEVPFGPAMSIMAVILYFWG 268
>gi|332358829|gb|EGJ36651.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK1056]
Length = 270
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTSEFNWELLFSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATIFKKFKFK 246
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++P+G A+S+ +I Y
Sbjct: 247 LK--------------EEVPFGPAMSIMAVILYFWG 268
>gi|91788408|ref|YP_549360.1| peptidase A24A, prepilin type IV [Polaromonas sp. JS666]
gi|91697633|gb|ABE44462.1| peptidase A24A, prepilin type IV [Polaromonas sp. JS666]
Length = 192
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 16/148 (10%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
DL S IPN + ++ L + L + L L+ F + + MG GD
Sbjct: 32 DLKSRRIPNWLVLMGLITSLALQII-FSGIGGFKAWGLGLLVGFGVFLPLYLLRAMGAGD 90
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH---------------I 130
VKL+ + G + + L + + G + L ++ N +
Sbjct: 91 VKLMAMVGAFLGPVSALGAVLTTLVVGGALAIAVALRCGILKNTLKNIRFALTLALYKGL 150
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGL 158
GM + + +PY +AI++G L
Sbjct: 151 SGGGMQLEQPSTSAGNLPYAVAIAVGTL 178
>gi|194437875|ref|ZP_03069969.1| bacterial Peptidase A24 N- domain family [Escherichia coli 101-1]
gi|194423096|gb|EDX39089.1| bacterial Peptidase A24 N- domain family [Escherichia coli 101-1]
Length = 253
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 22/164 (13%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIA 59
K S + CL F + D+ +P V+I + S L+ ++ +
Sbjct: 108 KIQDFQTSLILCSIFLCLFFLSFIDIREQWLPACVTIPLFWSGLVFSYFAEPESKILGAC 167
Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ + I +++ GGD+ L + W G + L I
Sbjct: 168 TGFFIMYLSMKIVSHMKKDDVVAGGDIALSCAAGAWLGIDEVMIFLLISSVIF------- 220
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+P F +P G A+S+G I
Sbjct: 221 -------------LLYSIPYRFKGTVFVPMGPALSVGFFICLLR 251
>gi|332283478|ref|YP_004415389.1| type IV prepilin-like proteins leader peptide processing enzyme
[Pusillimonas sp. T7-7]
gi|330427431|gb|AEC18765.1| type IV prepilin-like proteins leader peptide processing enzyme
[Pusillimonas sp. T7-7]
Length = 153
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 24/165 (14%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIA 59
M + +++ + L+ A D+ + ++P+ +++ + LL + +
Sbjct: 1 MDHTMILYVLAAVPLVVALLVLAWVDIRTGLLPDLITLPLAWLGLLINLDGLIAPLKDSV 60
Query: 60 LHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L + G ++ F + MG GD K+ + WFG + + G
Sbjct: 61 LGAVFGYMILWTANQMFRRIAGQDGMGYGDFKMTAALGAWFGMSMLPWIVMGACITGLGA 120
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F + +P+G +S+ G+ +
Sbjct: 121 -------------------AFSRQRSAKNQPMPFGPCLSVAGVAA 146
>gi|296112334|ref|YP_003626272.1| type IV prepillin peptidase PilD [Moraxella catarrhalis RH4]
gi|295920028|gb|ADG60379.1| type IV prepillin peptidase PilD [Moraxella catarrhalis RH4]
gi|326561845|gb|EGE12180.1| type IV prepillin peptidase PilD [Moraxella catarrhalis 7169]
gi|326563278|gb|EGE13545.1| type IV prepillin peptidase PilD [Moraxella catarrhalis 46P47B1]
gi|326563391|gb|EGE13656.1| type IV prepillin peptidase PilD [Moraxella catarrhalis 12P80B1]
gi|326568931|gb|EGE19000.1| type IV prepillin peptidase PilD [Moraxella catarrhalis BC1]
gi|326569233|gb|EGE19294.1| type IV prepillin peptidase PilD [Moraxella catarrhalis BC7]
gi|326577965|gb|EGE27829.1| type IV prepillin peptidase PilD [Moraxella catarrhalis O35E]
Length = 258
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 23/170 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVG 65
+ A+ +I + + A D ++P+R+ + + L+ + +VG
Sbjct: 104 IIGALSVIFVWFGLGLAGIDYRVQLLPDRLVLPLGMIGLMANGFGVLTTPVDAIFGAVVG 163
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + + + MG GD KLL++ W G + A+ +
Sbjct: 164 FLVLWLINALYRLARRQDGMGLGDAKLLSACGAWLGIWQLPIIVFIAAALGVVAGIII-- 221
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ + +G + M + + +
Sbjct: 222 ----------------QRHQGKASAFAFGPYLIMAAWVVLLFGEYIQAYI 255
>gi|110798578|ref|YP_696961.1| Type IV leader peptidase family protein [Clostridium perfringens
ATCC 13124]
gi|168216748|ref|ZP_02642373.1| Type IV leader peptidase family protein [Clostridium perfringens
NCTC 8239]
gi|169347144|ref|ZP_02866086.1| Type IV leader peptidase family protein [Clostridium perfringens C
str. JGS1495]
gi|170764009|ref|ZP_02637267.2| Type IV leader peptidase family protein [Clostridium perfringens B
str. ATCC 3626]
gi|110673225|gb|ABG82212.1| Type IV leader peptidase family protein [Clostridium perfringens
ATCC 13124]
gi|169296827|gb|EDS78956.1| Type IV leader peptidase family protein [Clostridium perfringens C
str. JGS1495]
gi|170710377|gb|EDT22559.1| Type IV leader peptidase family protein [Clostridium perfringens B
str. ATCC 3626]
gi|182381153|gb|EDT78632.1| Type IV leader peptidase family protein [Clostridium perfringens
NCTC 8239]
Length = 247
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ +++ L+ + D + + + + ++ A + + L+ +GL++
Sbjct: 96 TVKYIVLITFLIVISFIDYDTQDVYAVTTYPAVILGIIFALIEKFYFGENLLNYFMGLVI 155
Query: 69 FIICFCFFAF--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + MG GD+++ ++ GW + ++ I G I + IL +
Sbjct: 156 SALVIFLISKLTGAMGSGDIEIHAIAGIFLGWKLAIINIFLSFIIGGIIAVLAILFKQKK 215
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I +G AI + +I + G+
Sbjct: 216 K----------------GDYIAFGPAIGISTIILIFFGNIIIPIYFGV 247
>gi|91772142|ref|YP_564834.1| peptidase A24B, FlaK-like [Methanococcoides burtonii DSM 6242]
gi|91711157|gb|ABE51084.1| preflagellin peptidase FlaK [Methanococcoides burtonii DSM 6242]
Length = 252
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSF--LLTAFLLGMDYELIALHLL 63
M+ L+ L+++ SD+ + + N++ +MLG+ L+ + + L+
Sbjct: 1 MIELLKVLVCLLFLLYSCYSDIKTRRVTNKLWPIMLGAAAPLIIYDIARYGIPYVKWTLI 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
+ +F+ + F F GG D K+L ++ P+ + + + G
Sbjct: 61 SFIFIFVFVYILFYFGAFGGADAKILMVISLILPIYPALELISYHLPVAG 110
>gi|170766098|ref|ZP_02900909.1| prepilin peptidase [Escherichia albertii TW07627]
gi|170125244|gb|EDS94175.1| prepilin peptidase [Escherichia albertii TW07627]
Length = 244
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 22/164 (13%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIA 59
K S + CL F + D+ +P V+I + S L+ ++ +
Sbjct: 99 KIQDFQTSLILCSIFLCLFFLSFIDIREQWLPACVTIPLFWSGLVFSYFAEPESKILGAC 158
Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ + I +++ GGD+ L + W G + FL +++ + S+
Sbjct: 159 TGFFIMYLSMKIVSHMKKDDVVAGGDIALSCAAGAWLGVDEV-MIFLLTSSVIFLLYSIP 217
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ +P G A+S G I
Sbjct: 218 YRFKGTVF-------------------VPMGPALSAGFFICLLR 242
>gi|15640856|ref|NP_230487.1| leader peptidase TcpJ [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121585696|ref|ZP_01675491.1| leader peptidase TcpJ [Vibrio cholerae 2740-80]
gi|121725975|ref|ZP_01679274.1| leader peptidase TcpJ [Vibrio cholerae V52]
gi|147673195|ref|YP_001216320.1| leader peptidase TcpJ [Vibrio cholerae O395]
gi|153818054|ref|ZP_01970721.1| leader peptidase TcpJ [Vibrio cholerae NCTC 8457]
gi|153822036|ref|ZP_01974703.1| leader peptidase TcpJ [Vibrio cholerae B33]
gi|227081016|ref|YP_002809567.1| leader peptidase TcpJ [Vibrio cholerae M66-2]
gi|229505550|ref|ZP_04395060.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae BX
330286]
gi|229510779|ref|ZP_04400258.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae B33]
gi|229517900|ref|ZP_04407344.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae RC9]
gi|229608569|ref|YP_002879217.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae
MJ-1236]
gi|254847975|ref|ZP_05237325.1| leader peptidase TcpJ [Vibrio cholerae MO10]
gi|255744639|ref|ZP_05418590.1| TCP pilin signal peptidase TcpA processing [Vibrio cholera CIRS
101]
gi|262161229|ref|ZP_06030340.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae INDRE
91/1]
gi|262168732|ref|ZP_06036427.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae RC27]
gi|298499032|ref|ZP_07008839.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Vibrio cholerae MAK 757]
gi|172044531|sp|P0C6D9|LEP4_VIBCH RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|172047455|sp|A5F385|LEP4_VIBC3 RecName: Full=Type 4 prepilin-like proteins leader
peptide-processing enzyme; Includes: RecName:
Full=Leader peptidase; AltName: Full=Prepilin peptidase;
Includes: RecName: Full=N-methyltransferase
gi|13377530|gb|AAK20766.1|AF325733_22 leader peptidase TcpJ [Vibrio cholerae]
gi|13377561|gb|AAK20796.1|AF325734_22 leader peptidase TcpJ [Vibrio cholerae]
gi|431741|gb|AAA69695.1| toxin co-regulated pilus [Vibrio cholerae]
gi|9655291|gb|AAF94002.1| leader peptidase TcpJ [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121550059|gb|EAX60075.1| leader peptidase TcpJ [Vibrio cholerae 2740-80]
gi|121631457|gb|EAX63827.1| leader peptidase TcpJ [Vibrio cholerae V52]
gi|126511400|gb|EAZ73994.1| leader peptidase TcpJ [Vibrio cholerae NCTC 8457]
gi|126520430|gb|EAZ77653.1| leader peptidase TcpJ [Vibrio cholerae B33]
gi|146315078|gb|ABQ19617.1| leader peptidase TcpJ [Vibrio cholerae O395]
gi|227008904|gb|ACP05116.1| leader peptidase TcpJ [Vibrio cholerae M66-2]
gi|227012660|gb|ACP08870.1| leader peptidase TcpJ [Vibrio cholerae O395]
gi|229344615|gb|EEO09589.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae RC9]
gi|229350744|gb|EEO15685.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae B33]
gi|229357773|gb|EEO22690.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae BX
330286]
gi|229371224|gb|ACQ61647.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae
MJ-1236]
gi|254843680|gb|EET22094.1| leader peptidase TcpJ [Vibrio cholerae MO10]
gi|255737670|gb|EET93064.1| TCP pilin signal peptidase TcpA processing [Vibrio cholera CIRS
101]
gi|262022850|gb|EEY41556.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae RC27]
gi|262028979|gb|EEY47632.1| TCP pilin signal peptidase TcpA processing [Vibrio cholerae INDRE
91/1]
gi|297543365|gb|EFH79415.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Vibrio cholerae MAK 757]
Length = 253
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 23/166 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
V S V L F L + D S ++PN ++ + + + E +
Sbjct: 106 VDSFVLLGLYFILFNLFVIDFKSMLLPNLLTYPIFMLAFIYVQQNPALTVESSIIGGFAA 165
Query: 66 LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
I+ + ++MGGGD+KL T+ G FL I +
Sbjct: 166 FIISYVSNFIVRLFKRIDVMGGGDIKLYTAIGTLIGVEFVPYLFLLSSIIAFIHWFFARV 225
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ R IP G +I + +I + L
Sbjct: 226 SCRYCLY------------------IPLGPSIIISFVIVFFSIRLM 253
>gi|253682222|ref|ZP_04863019.1| prepilin peptidase, type IV [Clostridium botulinum D str. 1873]
gi|253561934|gb|EES91386.1| prepilin peptidase, type IV [Clostridium botulinum D str. 1873]
Length = 251
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 21/168 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYEL 57
+K + +L L+ D + + +I + FLL + L + +
Sbjct: 89 LKYGLTIEFIKYLFLCSFLIIIGCIDYNTTDVYFNTTISGIIVGILFLLINWYLNLPIKT 148
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
L ++ I + MG GDV++ + ++ G + L LF I+G I+
Sbjct: 149 YFLGGIIAGIAISLIVILT--GGMGWGDVEICVLSGIYIGAKLTIL-MLFLSFIIGSIVG 205
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ ++ + K+ I +G +I + LI+
Sbjct: 206 IILIIYKKK---------------SRKDYIAFGPSIVIATLITIYSGE 238
>gi|166031955|ref|ZP_02234784.1| hypothetical protein DORFOR_01656 [Dorea formicigenerans ATCC
27755]
gi|166028408|gb|EDR47165.1| hypothetical protein DORFOR_01656 [Dorea formicigenerans ATCC
27755]
Length = 260
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V L L+ AL D + +I +R I +L + +L+ + L + + V +
Sbjct: 112 VMLSYFGILLVVALIDWDTQIIYDRFHIFILILAIANIWLVPEHGLIDRLIGALIISVPM 171
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ GGGD+KL+ + + G T S + +FF + GG F+L + +
Sbjct: 172 LLLALAIPGAFGGGDIKLMAVSGAFLG-TGSVVCAMFFGLLTGGAYGAFMLKSKKLGKKD 230
Query: 131 PIFGMF 136
Sbjct: 231 VFAFGP 236
>gi|294495879|ref|YP_003542372.1| peptidase A24B, FlaK domain protein [Methanohalophilus mahii DSM
5219]
gi|292666878|gb|ADE36727.1| Peptidase A24B, FlaK domain protein [Methanohalophilus mahii DSM
5219]
Length = 255
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS---FLLTAFLLGMDYELIALH- 61
M+ A L+ L +A+ D+ + NRV ++ML F++ +
Sbjct: 1 MIVIAKILLCLGFLSYASYRDIKERRVGNRVWVIMLAVFSPFIIYELATSSSLVTYLIQM 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
+ ++F+ + F GG D KLL ++ F + P+F
Sbjct: 61 AISFGLIFVFSYVLFYLGAFGGADAKLLMVISIVFPFYPAF 101
>gi|87299159|emb|CAJ76217.1| competence transcription factor C [Bacillus sp. Ob 14]
Length = 186
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 36/108 (33%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I L + + + ++ + + + C +GG
Sbjct: 79 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
GD+KLL+ G F+ + I R+
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRIEVRKPL 186
>gi|260881316|ref|ZP_05404111.2| type IV prepilin leader peptidase [Mitsuokella multacida DSM 20544]
gi|260849089|gb|EEX69096.1| type IV prepilin leader peptidase [Mitsuokella multacida DSM 20544]
Length = 217
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 2/132 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
+ +I + +V +DL +I +R+ I +++ LL + VG
Sbjct: 77 LTKLVFLMIFQYFMVLYTWTDLEQRVIFDRMLIPFAVMGIISIPLLDRVLTDHLMAAAVG 136
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+VF+ I GGD+KL+ + +W G + ++ + +LGG+ ++ +L
Sbjct: 137 GVVFLALAVLTKGGIG-GGDIKLVAALGLWLG-SDMLMTVVIAGIVLGGMAALIMLATGK 194
Query: 126 ITNHIPIFGMFV 137
Sbjct: 195 RKKGDYFAYGPY 206
>gi|110801592|ref|YP_699549.1| signal peptidase type IV [Clostridium perfringens SM101]
gi|110682093|gb|ABG85463.1| Type IV leader peptidase family protein [Clostridium perfringens
SM101]
Length = 247
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ +++ L+ + D + + + + ++ A + + L+ +GL++
Sbjct: 96 TVKYIVLITFLIVISFIDYDTQDVYAVTTYPAVILGIIFALIEKFYFGENLLNYFMGLVI 155
Query: 69 FIICFCFFAF--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + MG GD+++ ++ GW + ++ I G I + IL +
Sbjct: 156 SALVIFLISKLTGAMGSGDIEIHAIAGIFLGWKLAIINIFLSFIIGGIIALLAILFKQKK 215
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I +G AI + +I + G+
Sbjct: 216 K----------------GDYIAFGPAIGISTIILIFFGNIIIPIYFGV 247
>gi|300697745|ref|YP_003748406.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
solanacearum CFBP2957]
gi|299074469|emb|CBJ54019.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
solanacearum CFBP2957]
Length = 183
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 49/160 (30%), Gaps = 10/160 (6%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGL 66
A + V SDL S +PN + V L ++ + L G
Sbjct: 7 IAGWASVAVLAVLIITSDLRSRRVPNWLVAVGLVLSIVLVKFGTVMALAYDWRDVWLGGA 66
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
I +A MG GDVK T + GW +L + G +L R+
Sbjct: 67 IALASFLPLYALGWMGAGDVKFFTVAGLLAGWHGLVAIWLVSSVLAGVHALAILLLRRVD 126
Query: 127 TNHIPI--------FGMFVPKSFLMKNKIPYGIAISMGGL 158
+ + IPY +++G L
Sbjct: 127 ASAPSAWMLMRVCPALARWDPGHAGRRGIPYAAYMAIGLL 166
>gi|218961045|ref|YP_001740820.1| putative bifunctional prepilin leader peptidase and methylase
[Candidatus Cloacamonas acidaminovorans]
gi|167729702|emb|CAO80614.1| putative bifunctional prepilin leader peptidase and methylase
[Candidatus Cloacamonas acidaminovorans]
Length = 242
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+++ L+ D +IPN +SI +L + ++ F+ G D +I + ++ ++
Sbjct: 93 YILLFSFLIPIFFIDALHQIIPNVLSIPLLITGIIFVFIPGNDVGIINGLVTGAVVFCLL 152
Query: 72 CFCFFA------FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
F +A +GGGD+ L T+ A +FG T FL A++G I + + +
Sbjct: 153 LFLAWAYQKIRGTEGLGGGDIWLFTALATYFGLTGIPYIFLL-SALMGIIYFLIFIRDKS 211
Query: 126 ITNHIPIFGMFVPKSFL 142
F +
Sbjct: 212 QPFAFGTFIALAAVLWS 228
>gi|221194980|ref|ZP_03568036.1| peptidase, A24 (type IV prepilin peptidase) family [Atopobium rimae
ATCC 49626]
gi|221184883|gb|EEE17274.1| peptidase, A24 (type IV prepilin peptidase) family [Atopobium rimae
ATCC 49626]
Length = 180
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 12/162 (7%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLL------------TAFLLGMDYELIALHLLVG 65
+ A + D+ + IP+ V +++ +++ G A L+
Sbjct: 19 VMGIATVCDIKTRTIPHEVPLLLGALWVIDVCSAAATPTKGWEMSAGGSLMRSACMLMAL 78
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L +GGGD+K+L+S A+ G+ + A+ + +
Sbjct: 79 LATSKFFILITKQAGIGGGDIKMLSSLALILGFEDLCVVIFSACALSVMFFFLASFVNTI 138
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ + K P+ +S+G +I + SY
Sbjct: 139 RKREGDKKQIMSSLEDIRKITFPFAPFVSLGVVICFAVSYYL 180
>gi|155289|gb|AAA63557.1| pilin protease [Vibrio cholerae]
Length = 253
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 23/166 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVG 65
V S V L F L + D S ++PN ++ + + + E +
Sbjct: 106 VDSFVLLGLYFILFNLFVIDFKSMLLPNLLTYPIFMLAFIYVQPNQALTVESSIIGGFAA 165
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
I+ + ++MGGGD+KL T+ G FL I +
Sbjct: 166 FIITYVSNFIVRLFKRIDVMGGGDIKLYTAIGTLIGVEFVPYLFLLSSIIAFIHWFFARV 225
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ R IP G +I + +I + L
Sbjct: 226 SCRYCLY------------------IPLGPSIIISFVIVFFSIRLM 253
>gi|37525670|ref|NP_929014.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Photorhabdus luminescens subsp. laumondii TTO1]
gi|36785098|emb|CAE14026.1| Type 4 prepilin-like proteins leader peptide processing enzyme
(Pectic enzymes secretion protein outO) [Includes:
Leader peptidase (Prepilin peptidase);
N-methyltransferase ] [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 264
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 23/155 (14%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIALHLLVGLIVF 69
FL+ LV A+ D ++P+++++ +L LL + L + + G + F
Sbjct: 122 FLVLSSMLVVLAVVDFEYLLLPDQLTLSLLWLGLLFNLPSAGFVALPLAVVGAVCGYLFF 181
Query: 70 IICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + +G GD K L + W G + L V R+
Sbjct: 182 RLVEWIARRLTRRDALGMGDAKFLAALGAWLGLEALPVVILLAVEFTLVSYLAMRWLRRI 241
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
T +IP+G +++ GLI
Sbjct: 242 KTP-----------------QIPFGPGLAVAGLIV 259
>gi|323191609|gb|EFZ76867.1| type IV leader peptidase family protein [Escherichia coli RN587/1]
Length = 249
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 22/156 (14%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLL 63
+ + + + CLVF AL DL +P V+ + + ++T D L
Sbjct: 109 LYDAVIVSLLFLCLVFLALIDLRENWLPACVTYPLFWAGMITPGFASSDDKIFGAFAGFL 168
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ I + ++ GGD+ L T+ W G + I
Sbjct: 169 IMYISMKLVSALRKEDVFAGGDIALATAAGAWLGIDKMPFFLILSSFIF----------- 217
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+P + +P G A+S I
Sbjct: 218 ---------ILYSLPARLRGQVFVPMGPALSASFFI 244
>gi|18311269|ref|NP_563203.1| prepilin peptidase [Clostridium perfringens str. 13]
gi|168205117|ref|ZP_02631122.1| Type IV leader peptidase family protein [Clostridium perfringens E
str. JGS1987]
gi|18145952|dbj|BAB81993.1| probable prepilin peptidase [Clostridium perfringens str. 13]
gi|170663278|gb|EDT15961.1| Type IV leader peptidase family protein [Clostridium perfringens E
str. JGS1987]
Length = 247
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 59/168 (35%), Gaps = 18/168 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ +++ L+ + D + + + + ++ A + + L+ +GL++
Sbjct: 96 TVKYIVLITFLIVISFIDYDTQDVYAVTTYPAVILGIIFALIEKFYFGENLLNYFMGLVI 155
Query: 69 FIICFCFFAF--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + MG GD+++ ++ GW + ++ I G I + IL +
Sbjct: 156 SALVIFLISKLTGAMGSGDIEIHAIAGIFLGWKLAIINIFLSFIIGGIIAVLAILFKQKK 215
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I +G AI + +I + G+
Sbjct: 216 K----------------GDYIAFGPAIGISTIILIFFGNIIIPIYFGV 247
>gi|288956967|ref|YP_003447308.1| hypothetical protein AZL_001260 [Azospirillum sp. B510]
gi|288909275|dbj|BAI70764.1| hypothetical protein AZL_001260 [Azospirillum sp. B510]
Length = 155
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ ++ +A +SD+ IPN +S+ + F + ++ L + F
Sbjct: 4 GLSVVLCGLFAWAMVSDIRRRTIPNWISLALAVLFAVATAADPGRFDP-VLAATAAGLTF 62
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
I F ++GGGDVKL+T+ A+W G + FL I G + +
Sbjct: 63 AILLAAFLAGLVGGGDVKLMTAAALWTGLSGLPGLFLGTALIGG-----LMAFGALALRG 117
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ G+ + + +PYG+AI L+S P
Sbjct: 118 LRRLGLLSREGAGEMDGLPYGVAIGAAALLSIP 150
>gi|312115330|ref|YP_004012926.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC
17100]
gi|311220459|gb|ADP71827.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC
17100]
Length = 161
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 52/98 (53%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S V P LV+AA DL + +IPNR+ +V+ F + A L G+D IA H L
Sbjct: 5 LTSTVAAALPVLLVWAAAVDLLTRVIPNRLVLVLAACFAVFALLAGLDAARIASHAGCAL 64
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104
+V + + FA +++GGGD KLL ++W G
Sbjct: 65 LVLVCAYGLFAASLLGGGDAKLLAVASLWIGPNALLPF 102
>gi|253687066|ref|YP_003016256.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753644|gb|ACT11720.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 183
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 19/168 (11%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI--------ALHLLVG 65
+ CL++ +DL I NR +++L +L + + + L
Sbjct: 12 LLMGCLLWCISTDLLVRKITNRAVLILLLGWLFFSASHVLQSGALDMLALRKTLWALPGA 71
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL--------- 116
V ++ F F +G GDVKL++ +W G + + G +
Sbjct: 72 AAVLVVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIVFVMVTALAGGVLALSLPLLNTV 131
Query: 117 --SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+V + M + IPYG+AI+ G +
Sbjct: 132 PTAVAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVLI 179
>gi|172060492|ref|YP_001808144.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
gi|171993009|gb|ACB63928.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
Length = 165
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 2/158 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL-HLLV 64
M F A D+ I N + + L L+ A + + + L+
Sbjct: 1 MARLIFIGAFLGWAAFVAAGDIRFRRIRNSLVVAGLFGALVAAAIGRNPFGISLTQSLVG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + F FA +MG DVK+ W G P L ++ G+ ++ ++ +
Sbjct: 61 AAVGLVCFFPLFALRVMGAADVKVFAVLGAWCG-APMLLLLWIVGSLAAGVHALCVMLLS 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + PY + + +
Sbjct: 120 RTSVSALYKRATPTMTLGGRRATPYAAFLVIPAAVWLL 157
>gi|94496432|ref|ZP_01303009.1| prepilin peptidase [Sphingomonas sp. SKA58]
gi|94424178|gb|EAT09202.1| prepilin peptidase [Sphingomonas sp. SKA58]
Length = 246
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
+ A + + L+ A+ D +P+ +++ + + + +G
Sbjct: 97 LAGAAWASLGWLLLPLAILDWRHFWLPDALTLPLAFLGFALGPYATDVGVMDRGIGAALG 156
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V + + + +G GD KLL + WFGW L ++ +
Sbjct: 157 YGVLLAIALSYRAIRGRDGLGLGDAKLLGALGAWFGWQALPLILFCAAGSGLLVMLLTGR 216
Query: 122 TVRMITNHIPI 132
Sbjct: 217 AKSAAARAPLG 227
>gi|10955361|ref|NP_053073.1| prepilin peptidase [Escherichia coli]
gi|190014875|ref|YP_001965387.1| Prepilin peptidase [Escherichia coli]
gi|194429611|ref|ZP_03062130.1| prepilin peptidase [Escherichia coli B171]
gi|215276202|ref|YP_002332165.1| prepilin peptidase [Escherichia coli O127:H6 str. E2348/69]
gi|499387|emb|CAA84229.1| BfpP protein [Escherichia coli]
gi|847977|gb|AAC44046.1| BfpG [Escherichia coli]
gi|1122408|emb|CAA92334.1| BfpP [Escherichia coli]
gi|6009387|dbj|BAA84846.1| prepilin peptidase [Escherichia coli]
gi|109389596|gb|ABG29515.1| Prepilin peptidase [Escherichia coli]
gi|194412335|gb|EDX28638.1| prepilin peptidase [Escherichia coli B171]
gi|215267798|emb|CAS07447.1| prepilin peptidase [Escherichia coli O127:H6 str. E2348/69]
gi|323159048|gb|EFZ45049.1| type IV leader peptidase family protein [Escherichia coli E128010]
Length = 249
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 22/156 (14%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLL 63
+ + + + CLVF AL DL +P V+ + + ++T D L
Sbjct: 109 LYDAVIVSLLFLCLVFLALIDLRENWLPACVTYPLFWAGMITPGFASSDDKIFGAFTGFL 168
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ I + ++ GGD+ L T+ W G + I
Sbjct: 169 IMYISMKLVSALRKEDVFAGGDIALATAAGAWLGIDKMPFFLILSSFIF----------- 217
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+P + +P G A+S I
Sbjct: 218 ---------ILYSLPARLRGQVFVPMGPALSASFFI 244
>gi|293391602|ref|ZP_06635936.1| prepilin peptidase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290952136|gb|EFE02255.1| prepilin peptidase [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 228
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 24/162 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
+ + F + L+ +L D +I + + L A+ + ++
Sbjct: 83 LQALCFALYGALLIVISLVDWHYRLISPALCQALFALGLGAAYWQLGTLTLAQSLQSAVI 142
Query: 65 GLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
VF + ++ +G GD L V+ FLF G + + +
Sbjct: 143 FFGVFYAIYHAAKWYYRQEALGRGDYWLALGLGVFL-PAQQLPVFLFLACFFGLLYAAYA 201
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
N +P+G +S+ G++
Sbjct: 202 KYQHRTLNT-----------------MPFGPFMSLAGVVCLL 226
>gi|330955946|gb|EGH56206.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae Cit 7]
Length = 114
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 16/124 (12%)
Query: 52 GMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
G+ + L VF + MG GD KLL W GW L+ L ++
Sbjct: 4 GLQLLELPYRTLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSL 62
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+G +L V ++ VR + IP+G +++ G I+ +
Sbjct: 63 VGAVLGVIMMRVRRV---------------ESGTPIPFGPYLAIAGWIALLWGGQITDSY 107
Query: 172 MGLS 175
M +
Sbjct: 108 MQFA 111
>gi|327463756|gb|EGF10072.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK1057]
Length = 270
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 127 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWELFLSLLVGAGLYSLI 186
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + +
Sbjct: 187 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATI------- 239
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F F +K ++P+G A+S+ +I Y
Sbjct: 240 -------FKKFKFKLKEEVPFGPAMSIMAVILYFWG 268
>gi|153938409|ref|YP_001390674.1| type IV leader peptidase family protein [Clostridium botulinum F
str. Langeland]
gi|152934305|gb|ABS39803.1| type IV leader peptidase family protein [Clostridium botulinum F
str. Langeland]
gi|295318750|gb|ADF99127.1| type IV leader peptidase family protein [Clostridium botulinum F
str. 230613]
Length = 252
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIM 81
DL + + ++++I + ++ + + V L I F M
Sbjct: 111 FIDLDTTDVYSKITISAMIIGVIYILIEKFYFGYGIKTYMYAVLLCTIAIGTIIFTTKGM 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD+ + +++ G + ++ LFF I G ++ +F++ +
Sbjct: 171 GSGDLDIYIVVSLFLGLKITAMT-LFFSFIFGALIGIFLIISKRK--------------- 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ +P+G I+M + S + +
Sbjct: 215 TKKDYMPFGPFIAMASIFSILFGDKVSLLYIS 246
>gi|83747920|ref|ZP_00944952.1| PROBABLE PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN; CpaA2 [Ralstonia
solanacearum UW551]
gi|83725453|gb|EAP72599.1| PROBABLE PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN; CpaA2 [Ralstonia
solanacearum UW551]
Length = 183
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 47/162 (29%), Gaps = 10/162 (6%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLV 64
A + V SDL S +PN + V L + + L
Sbjct: 5 TDIAGWASVAVLAVLIITSDLRSRRVPNWLVAVGLVLSIALVKFGTVMALAYDWRDVWLG 64
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G I +A MG GDVK T + GW +L + G +L R
Sbjct: 65 GAIALAGFLPLYALGWMGAGDVKFFTVAGLLAGWHGLVAIWLVSSVLAGVHALAILLLRR 124
Query: 125 MITNHIPI--------FGMFVPKSFLMKNKIPYGIAISMGGL 158
+ + IPY +++G L
Sbjct: 125 ADASAPSAWMLMRVCPALARWDPGHAGRRGIPYAAYMAIGLL 166
>gi|54309658|ref|YP_130678.1| hypothetical protein PBPRA2494 [Photobacterium profundum SS9]
gi|46914096|emb|CAG20876.1| Hypothetical membrane protein [Photobacterium profundum SS9]
Length = 145
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 14/155 (9%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ P +++ SD+ I N V + L AF +A ++ +I+F+I
Sbjct: 5 LQLMPLLMLWVTYSDIRYRRISNIVCAAVFSLSLTLAFSQH----QLADGIISSIIMFLI 60
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F FNI+ GD KL ++ AV + F + G + ++++ ++I P
Sbjct: 61 SLLLFYFNIVAAGDGKLASAFAVALSPQQLISALYFTLLFGGVVAVIYLIKYQLIQRRSP 120
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+PYG+AI+ G + SYL
Sbjct: 121 ----------EKARGLPYGVAIACGFGLQIFASYL 145
>gi|168184162|ref|ZP_02618826.1| type IV leader peptidase family protein [Clostridium botulinum Bf]
gi|182672675|gb|EDT84636.1| type IV leader peptidase family protein [Clostridium botulinum Bf]
Length = 252
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 18/152 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIM 81
DL + + ++++I + ++ + + V L +I F M
Sbjct: 111 FIDLDTTDVYSKITISAIIIGVIYTLIEKFYFGYGIKTYMYAVLLCTTVIGTIIFTTKGM 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD+ + +++ G+ + ++ LFF I G ++ +F++ +
Sbjct: 171 GSGDLDIYIIVSLFLGFKITAMT-LFFSFIFGALIGIFLIISKRK--------------- 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ IP+G I+M + S + +
Sbjct: 215 TKKDCIPFGPFIAMASIFSILFGDKVFLLYIS 246
>gi|254488438|ref|ZP_05101643.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101]
gi|214045307|gb|EEB85945.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101]
Length = 164
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 5/159 (3%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
++ A +D+ S I N I + F++ ++ + +E HLL +I +
Sbjct: 11 FLPFVLPLCLYTAYTDIASMRITNPTVITLAAVFVIIGPVV-LPFETYLWHLLAMVIALV 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ A +MG GD K + + + +A+ L LT R+ + +
Sbjct: 70 VGIILNAGGVMGAGDAKFIAAAT----PFIALGDLRLVMALFMATLLAAALTHRIAKHTV 125
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
S+ K P G+A+ LF
Sbjct: 126 ARRFAPTWTSWQQGKKFPMGLALGPALAFYLILGALFGA 164
>gi|22001227|gb|AAM88347.1|AF521703_4 PilD [Aggregatibacter actinomycetemcomitans]
Length = 229
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 24/162 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
+ + F + L+ +L D +I + + L A+ + ++
Sbjct: 84 LQALCFALYGALLIVISLVDWHYRLISPALCQALFALGLGAAYWQLGTLTLAQSLQSAVI 143
Query: 65 GLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
VF + ++ +G GD L V+ FLF G + + +
Sbjct: 144 FFGVFYAIYHAAKWYYRQEALGRGDYWLALGLGVFL-PAQQLPVFLFLACFFGLLYAAYA 202
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
N +P+G +S+ G++
Sbjct: 203 KYQHRTLNT-----------------MPFGPFMSLAGVVCLL 227
>gi|291521717|emb|CBK80010.1| Flp pilus assembly protein, protease CpaA [Coprococcus catus GD/7]
Length = 175
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 2/140 (1%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + + AA+ D S +PN + + + + F + +++F
Sbjct: 2 ILQMTLLLFMAAAAVKDYRSYWVPNELILAGALNGYILRFWADGS-GGVIDGAAGMVLIF 60
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
I+C F ++ G GD+KL+ + AV+ G S + L + G ++S+ + I
Sbjct: 61 ILCAGLFVLSMFGAGDLKLMMAMAVYMGPVKS-VRILIVSLVFGAVISLLKMLKYDICKE 119
Query: 130 IPIFGMFVPKSFLMKNKIPY 149
+ + + PY
Sbjct: 120 RFRYLLHYAQRIQRHGAEPY 139
>gi|238750894|ref|ZP_04612391.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380]
gi|238710808|gb|EEQ03029.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380]
Length = 140
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 20/159 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ S + L+ SD+ +I N+ + + + L+ +F+ + +++
Sbjct: 2 NIFQSLLITFLVMQLLLICYSDIRYRIISNKFVVTIAITALVLSFITYNT-----VSIVI 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI + + F FN +GGGDVKL+ + S L+ + G ++ + +L R
Sbjct: 57 PLIALLTGYIIFHFNFIGGGDVKLIAVLLLTLNSGQSLNFILYTAIMGGVVMIIGMLINR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ + +PY +AIS G L+S
Sbjct: 117 ---------------DDIQQRGVPYAVAISGGFLLSLFS 140
>gi|293400855|ref|ZP_06645000.1| leader peptidase (prepilin peptidase) [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305881|gb|EFE47125.1| leader peptidase (prepilin peptidase) [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 231
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 16/166 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + + + D + IPN + I ++ +L L L + +
Sbjct: 78 TLIIFSVIMIFLAITMIDFDTMTIPNGLIIALVVPAVLMTILHPEITLLERGIGFFIVSL 137
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ + GGGD+KLL + GW L V G S ++T +
Sbjct: 138 PMYLLTLMIPDCFGGGDIKLLAVSGFMIGWKGILLGAFIGVLTCGCYASWLLITKKTQK- 196
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
I +G + G ++S S + +
Sbjct: 197 ---------------GAHIAFGPYLCFGIVVSLMYSEFIIHTYLSM 227
>gi|188592029|ref|YP_001796627.1| prepilin peptidase transmembrane protein [Cupriavidus taiwanensis
LMG 19424]
gi|170938403|emb|CAP63390.1| putative PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN [Cupriavidus
taiwanensis LMG 19424]
Length = 157
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 4/156 (2%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+I +D +PN + + + + L +A L + +
Sbjct: 1 MIAALLCAATLYTDFAYRRVPNLLLAIAVLALGLALIAGQATEPPLAARLTGAGLGLAVT 60
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH--- 129
+A M GDVK LT ++ G ++++ + + + R
Sbjct: 61 LPVYALGRMAAGDVKFLTVAGLFTGPQGLVVAWVVGSLLGLVHALLALALARRTPAADHA 120
Query: 130 -IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ F + IPY +++G L
Sbjct: 121 LHSQAPSLLTAQFSLARGIPYAAYLAVGVLAWMAAG 156
>gi|167628384|ref|YP_001678883.1| peptidase a24a, prepilin type iv peptidase [Heliobacterium
modesticaldum Ice1]
gi|167591124|gb|ABZ82872.1| peptidase a24a, prepilin type iv peptidase [Heliobacterium
modesticaldum Ice1]
Length = 255
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-------LLGMDYELIALHLLVGLIVFI 70
+ A+ DL +IPNRV + L G+ L +L V +
Sbjct: 105 FFIVIAVIDLQHKIIPNRVLGAAFVAIALRQAGKVWTGQDGGLALLLDSLAGGVFGAALL 164
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+F+ +G GDVK + GW + + + I + R
Sbjct: 165 FAVFWFSKGGLGLGDVKFAFVFGLLLGWPGALWAITLSALCGSVVGLAGIASGR------ 218
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ K++IP+G ++ G Y
Sbjct: 219 ----------WTGKSQIPFGPFLAFGYFTVYL 240
>gi|123443819|ref|YP_001007790.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090780|emb|CAL13662.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 140
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 20/158 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ + + L+F SD+ I N+ I + + L F + +++
Sbjct: 2 DTLNILISALLMLQLLFVCYSDIRYRTISNKFIITIAINALALGFTMNHTVN-----IVI 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+I + F F+++GGGDVKL+T + S L+ + G ++ + +L R
Sbjct: 57 PFSALLIGYSLFHFHLIGGGDVKLITVLLLALTTAKSLDFILYTAMMGGVVMIIGMLVNR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +PY +AIS G L+S+
Sbjct: 117 ---------------EDIQQRGVPYAVAISAGFLLSFL 139
>gi|167748315|ref|ZP_02420442.1| hypothetical protein ANACAC_03059 [Anaerostipes caccae DSM 14662]
gi|167652307|gb|EDR96436.1| hypothetical protein ANACAC_03059 [Anaerostipes caccae DSM 14662]
Length = 165
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 5/135 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ F L A + D + IPN L G + I L L ++
Sbjct: 1 MVLLFYLTAAVIWDFTTFRIPNYFIFFGLILGASLLPFRGYGIQEILLGCLCPVVFL--- 57
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ F G GD+KL T ++ G + + GG+LS+F + +
Sbjct: 58 YPLFCMGAFGAGDIKLFAVTGLFLG--GLNIYLVAVSFAAGGVLSLFQMLSDRSLIPRLV 115
Query: 133 FGMFVPKSFLMKNKI 147
+ + K
Sbjct: 116 CFYSYLAGCIHERKF 130
>gi|323966284|gb|EGB61719.1| peptidase [Escherichia coli M863]
gi|327250970|gb|EGE62663.1| type 4 prepilin-like proteins leader peptide-processing enzyme
domain protein [Escherichia coli STEC_7v]
Length = 114
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 19/120 (15%)
Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
+ ++G F + + + +G GDVK L + W WT
Sbjct: 1 MFYQICNPDGLADALWGAIIGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTF 60
Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ G + + +L +KN +P+G ++ G +
Sbjct: 61 LPRLVFLAASFACGAVVIGLLMRGKE---------------SLKNPLPFGPFLAAAGFVV 105
>gi|238920385|ref|YP_002933900.1| type IV prepilin leader peptidase, [Edwardsiella ictaluri 93-146]
gi|238869954|gb|ACR69665.1| type IV prepilin leader peptidase, putative [Edwardsiella ictaluri
93-146]
Length = 219
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 21/152 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFII 71
L + AL D S ++P+ ++ +L L+ G + +
Sbjct: 75 LSFCTLSLALALIDRASLLLPDALTQPLLWLGLIWNALYQPTHLPQAVFGAATGYLALWL 134
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F +GGGDVKLL + W G L + G +++
Sbjct: 135 IAWGFWRWRGVQGLGGGDVKLLAALGAWCGGPDLPALLLMASLLTLGSIALL-------- 186
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + +P+G A+ + GL
Sbjct: 187 --------HCWRGVSLAEPVPFGPALLVAGLW 210
>gi|51245389|ref|YP_065273.1| hypothetical protein DP1537 [Desulfotalea psychrophila LSv54]
gi|50876426|emb|CAG36266.1| unknown protein [Desulfotalea psychrophila LSv54]
Length = 191
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 15/171 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ +F+ L + ++DL + IPN +++ M+ LL LL + + L
Sbjct: 9 LTIVLFVSLLIALSVSTVTDLRARRIPNFITLSMMLIALLVHGLLS-GFAGVLFSLQGIA 67
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-- 124
+ MG GDVKLL + G +F +FL + G V ++
Sbjct: 68 CGMGLLLIPHLLGGMGAGDVKLLAAVGAALGAAHTFYAFLVIAILGGLTSIVMLIIRSTC 127
Query: 125 ------------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ + V +S L + IPYG I+ G L
Sbjct: 128 LITLQRMGNAFLAAFGGVGAAALRVDRSTLQREGIPYGAVIAGGTLAYILY 178
>gi|311069299|ref|YP_003974222.1| membrane protease and transmethylase [Bacillus atrophaeus 1942]
gi|310869816|gb|ADP33291.1| membrane protease and transmethylase [Bacillus atrophaeus 1942]
Length = 248
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 16/151 (10%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
SD+ +IP+ V + L + + + +L ++ + +GGG
Sbjct: 112 SDIHYMLIPDSVLMFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLIAVLSKGGIGGG 171
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
D+KL + G +F+ V I + L+ + K
Sbjct: 172 DIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGK----------------LDRK 215
Query: 145 NKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+ AI+ G L+SY + ++
Sbjct: 216 QPIPFAPAIAAGSLVSYLYGEEILALYVKMA 246
>gi|189485485|ref|YP_001956426.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|170287444|dbj|BAG13965.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 218
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 27/165 (16%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-----------MDYE 56
+F F L+ + +D F +IP V I ++ + + +F+
Sbjct: 48 QFILFAFLTFSLISVSTTDYFHRIIPAIVPIFLIITGFIFSFMNSALGETYPSRFINSVL 107
Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
I V L+ + + +GGGD+KL+ V+ GW + + + G
Sbjct: 108 GILTGGGVLLVAGFLGQLIYKKEAIGGGDIKLMAGVGVFIGWEKALFAVFIAAVMGGIAG 167
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + + K IP+G +S I+
Sbjct: 168 LILLAAKK----------------IEKKGYIPFGPFLSAASFITL 196
>gi|323179142|gb|EFZ64716.1| type 4 prepilin-like proteins leader peptide-processing enzyme
domain protein [Escherichia coli 1180]
gi|323182800|gb|EFZ68201.1| type 4 prepilin-like proteins leader peptide-processing enzyme
domain protein [Escherichia coli 1357]
Length = 114
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 19/120 (15%)
Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
+ + ++G F + + + +G GDVK L + W WT
Sbjct: 1 MFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTF 60
Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ G + V +L +KN +P+G ++ G +
Sbjct: 61 LPRLVFLAASFACGAVVVGLLMRGKE---------------SLKNPLPFGPFLAAAGFVV 105
>gi|149911412|ref|ZP_01900030.1| membrane protein, putative [Moritella sp. PE36]
gi|149805520|gb|EDM65525.1| membrane protein, putative [Moritella sp. PE36]
Length = 200
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 12/156 (7%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L A DL IPN + ++ L + ++ + + + II
Sbjct: 18 FIMLTVALYFDLRYQRIPNLLCLLTLLLGITINSY-FYGWDGLLDAVSGAALAIIILIPV 76
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----------LFFVAILGGILSVFILTVR 124
+ F ++G GDVKL+ G S + G + ++ R
Sbjct: 77 YYFKMLGAGDVKLMIGIGALAGPLVLTWSIAYGVIFGAFTSILIAIKAVGWRGLKMMMSR 136
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
I K + +PY A+ +G +++
Sbjct: 137 YIDCIYLGTYFKPEKGDAGRVNVPYAPALMLGWMLA 172
>gi|163801679|ref|ZP_02195577.1| hypothetical protein 1103602000597_AND4_09502 [Vibrio sp. AND4]
gi|159174596|gb|EDP59398.1| hypothetical protein AND4_09502 [Vibrio sp. AND4]
Length = 145
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 19/157 (12%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + + F + ++ ++ D I N ++L + + + +
Sbjct: 1 MSYESYFFLLFIVCLYVSVVDFLHRKIHNLTLFILLVFQCFLSPID--------IQIASF 52
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++ I ++ N +G GD+K ++ SF+ G + +++L +
Sbjct: 53 FLILGIGLILYSQNWIGAGDIKYAAVLSLTIVPNDLLWSFVMTAYAGGFLAVMYLLGQK- 111
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ IPYGIAIS+G +
Sbjct: 112 ----------LPINVSNTQEGIPYGIAISIGFYLIIL 138
>gi|317121504|ref|YP_004101507.1| prepilin peptidase [Thermaerobacter marianensis DSM 12885]
gi|315591484|gb|ADU50780.1| Prepilin peptidase [Thermaerobacter marianensis DSM 12885]
Length = 307
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 17/129 (13%)
Query: 47 TAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
+ VG ++F I + +G GDVKL + G ++
Sbjct: 194 AVAPGWASWARALGAAAVGGLIFQILRWG-SRGGLGFGDVKLAAWLGFYLGPRALPVALF 252
Query: 107 FFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ G + V +LT R ++ IP+G ++ GGL+ +
Sbjct: 253 TAAVLGGLVAGVLLLTGRR----------------GRRDVIPFGPFLAAGGLVGWFFGEG 296
Query: 167 FKVALMGLS 175
A +GL
Sbjct: 297 LWQAYLGLG 305
>gi|256397242|ref|YP_003118806.1| peptidase A24A prepilin type IV [Catenulispora acidiphila DSM
44928]
gi|256363468|gb|ACU76965.1| peptidase A24A prepilin type IV [Catenulispora acidiphila DSM
44928]
Length = 242
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 24/166 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-------TAFLLGMDYELIAL 60
+ FL V A DL +P++++ + L+ +G+ Y +
Sbjct: 92 ATPAFLAFVLGCVLLAFIDLAVRRLPDQLTAPLAVLGLVGLSTAAYLGRDMGLLYRGLTA 151
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSV 118
L G + + + MG GD KL ++ G+ + +F + ++
Sbjct: 152 AALAGGLFLALAWIRPDGEGMGLGDAKLAAVLGLFLGYLGWSDLVLGMFAGTFSAAVFAL 211
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+L K+ + YG + +G +++
Sbjct: 212 VMLRTGR---------------MDRKSALTYGPFLILGAVLAVLVG 242
>gi|160893703|ref|ZP_02074487.1| hypothetical protein CLOL250_01257 [Clostridium sp. L2-50]
gi|156864688|gb|EDO58119.1| hypothetical protein CLOL250_01257 [Clostridium sp. L2-50]
Length = 144
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 2/128 (1%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
AAL D+ + IPN + ++ L + + L I I +
Sbjct: 1 MILVAGIAALYDIRTWKIPNWLILLGLETGIFITVWQNGVRIGSIRVLAGIWIPIGILYV 60
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F +G GD+KL ++ + G+ L + I GGILS+F + +I
Sbjct: 61 MFLAGWLGAGDIKLFSAVGAFCGF--MIWKILLYAFIAGGILSLFYVINLLIRKKKRRGL 118
Query: 135 MFVPKSFL 142
+
Sbjct: 119 DGRAERHR 126
>gi|260599641|ref|YP_003212212.1| Leader peptidase hopD [Cronobacter turicensis z3032]
gi|260218818|emb|CBA34173.1| Leader peptidase hopD [Cronobacter turicensis z3032]
Length = 155
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 19/139 (13%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFCFFAF----NI 80
DL ++P+ ++ +L L + LVG + + + + +
Sbjct: 20 DLRDGLLPDSLTCPLLWLGLSYHLIFQPQYLADAVIGALVGYLSLWLLYWTYRWLREYEG 79
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
+G GDVK L + W GW L + + + V
Sbjct: 80 LGYGDVKFLGALGAWHGWQMLGLLLVIASVLGLIAVFVLYQLKGRPLLC----------- 128
Query: 141 FLMKNKIPYGIAISMGGLI 159
K +P+G +++ GLI
Sbjct: 129 ---KTPLPFGPFMAVAGLI 144
>gi|87299147|emb|CAJ76211.1| competence transcription factor C [Bacillus sp. Ob 11]
Length = 185
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 37/107 (34%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I L + + + ++ + + + C +GG
Sbjct: 79 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
GD+KLL+ G F+ + I R+ +
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRIEVRSL 185
>gi|323493937|ref|ZP_08099054.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546]
gi|323311878|gb|EGA65025.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546]
Length = 152
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 16/159 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M ++ + +I C + +SD I NR+ +++ + + AF G +
Sbjct: 1 MNLDNIIAVTIVIINIACAFHSCISDHQHRTISNRICKLLIITNTIAAFYYGYGIQ---- 56
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ + ++F I + G GD+KLL + +V + + I G L V
Sbjct: 57 SVTITSVIFFILIIIWLIGAFGAGDIKLLCAFSVGIKPELTLACLVLVGLIGGLQLVVMF 116
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
L + K+ + + IPYGI IS+ G+
Sbjct: 117 LI------------GLMTKTNIFEKGIPYGIPISISGVA 143
>gi|156936506|ref|YP_001440422.1| hypothetical protein ESA_04407 [Cronobacter sakazakii ATCC BAA-894]
gi|156534760|gb|ABU79586.1| hypothetical protein ESA_04407 [Cronobacter sakazakii ATCC BAA-894]
Length = 155
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 19/158 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
+ + + D+ ++P+ ++ +L L L G
Sbjct: 1 MIAIWISAYMLLNAGLVVKDVRDGLLPDNLTCPLLWIGLSYQLIFAPQHLADAVTGALAG 60
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + + + +G GDVK L + W GW + + +
Sbjct: 61 YLSLCFFYWAYRWLRGYEGLGYGDVKFLGALGAWHGWQLLGVLLTIASLLGLAAALIVYY 120
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
K +P+G +++ GL+
Sbjct: 121 IKGKAPV--------------RKTPLPFGPFLAIAGLV 144
>gi|228913975|ref|ZP_04077598.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228845667|gb|EEM90695.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 150
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IPNR+ +L + + ++ + + + C +GG
Sbjct: 23 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 82
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GD+KLL+ G F+ ++ R M
Sbjct: 83 GDIKLLSLLGFIAGLKGVFMILFLSSFFSLCFFGAGLVLKR----------------MKM 126
Query: 144 KNKIPYGIAISMGGLISYPDSY 165
+ +IP+G IS+G + +Y
Sbjct: 127 RTQIPFGPFISLGAICYMLVTY 148
>gi|325111213|ref|YP_004272281.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
5305]
gi|324971481|gb|ADY62259.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
5305]
Length = 188
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 1/113 (0%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + A D IPN++++ M + + + +A L LI
Sbjct: 6 AIVFVVFVTAYTLAATWWDQVYWKIPNKLTLPMFFAGWVYQ-GVFNGLPGLADGALGFLI 64
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
F F + GGGDVKL+ + +VW G+ S F+ ++ + +
Sbjct: 65 GFGFLFIIWIIGSGGGGDVKLMGALSVWLGFQWSIYVFVISTFLVSVLAIGIV 117
>gi|254468666|ref|ZP_05082072.1| type 4 prepilin peptidase PilD [beta proteobacterium KB13]
gi|207087476|gb|EDZ64759.1| type 4 prepilin peptidase PilD [beta proteobacterium KB13]
Length = 249
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 20/157 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLL 63
+L+ + L+D+ + + + +G L F L + + L
Sbjct: 101 TEFIFYLVFLSISLHLFLTDMEYQQLYLPMMLTGIGVGLGYGFYLDQLVLHFYGALLGFT 160
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + F +G GD LL WFG F S + I ++ L
Sbjct: 161 LLFATNWLFQFFRKKQGLGDGDKYLLAMMGAWFGPLIVFQSLVLSSWIAIIFMAFLYLKN 220
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ I KI YG I + +
Sbjct: 221 KTIP-----------------TKIAYGPFIILASIFI 240
>gi|168179978|ref|ZP_02614642.1| type IV leader peptidase family protein [Clostridium botulinum NCTC
2916]
gi|182668935|gb|EDT80911.1| type IV leader peptidase family protein [Clostridium botulinum NCTC
2916]
Length = 252
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIM 81
DL + + ++++I + ++ + + V L I F M
Sbjct: 111 FIDLDTTDVYSKITISAMIIGVIYILIEKFYFGYGIKTYMYAVLLCTTAIGTIIFTTKGM 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD+ + +++ G + ++ LFF I G ++ +F++ +
Sbjct: 171 GSGDLDIYIVVSLFLGLKITAMT-LFFSFIFGALIGIFLIISKRK--------------- 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ +P+G I+M + S + +
Sbjct: 215 TKKDYMPFGPFIAMASIFSILFGDKVSLLYIS 246
>gi|238019097|ref|ZP_04599523.1| hypothetical protein VEIDISOL_00959 [Veillonella dispar ATCC 17748]
gi|237864352|gb|EEP65642.1| hypothetical protein VEIDISOL_00959 [Veillonella dispar ATCC 17748]
Length = 193
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 56/170 (32%), Gaps = 22/170 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ A++ + ++ A D+ ++P+ ++V++ ++ +F+ + + ++
Sbjct: 34 SFIHVALYAVFSLIIIAGATIDMHYYILPDEGALVLVLGGIVYSFINDKSMLVTIISVMS 93
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + G GDVK ++ A+W F + L +
Sbjct: 94 -VGAITYGLRLMSHKGFGLGDVKWFSAIAMWLTPWEIVCFFYVAFCVGSLYLLL------ 146
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G + GG + +V L
Sbjct: 147 ---------------TSYRNRYIPFGPFLCFGGWCALHGGSYMEVLYQWL 181
>gi|222099857|ref|YP_002534425.1| Type IV prepilin peptidase [Thermotoga neapolitana DSM 4359]
gi|221572247|gb|ACM23059.1| Type IV prepilin peptidase [Thermotoga neapolitana DSM 4359]
Length = 240
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 20/163 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + L+ + DL + +IP+ ++ ++ + A + L +
Sbjct: 97 LDLLLASVISSSLIAISFIDLETFLIPDYLNFTVVSVSFIMALRGH--FLDHLLAFFLVT 154
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+F++ + +G GDV L + + ++ + ++ G + ++
Sbjct: 155 AMFLMLKFLYR-EGLGTGDVILAMGIGILLTPFSAIIA-VLAASVAGILFALI------- 205
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
K +IP+G +++GG + SY
Sbjct: 206 ---------KGKGKMDTKMRIPFGPFLALGGYTLFLISYTMGW 239
>gi|317472146|ref|ZP_07931478.1| type IV leader peptidase [Anaerostipes sp. 3_2_56FAA]
gi|316900550|gb|EFV22532.1| type IV leader peptidase [Anaerostipes sp. 3_2_56FAA]
Length = 165
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 5/135 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ F L A + D + IPN L G + I L L ++
Sbjct: 1 MVLLFYLTAAVIWDFTTFRIPNYFIFFGLILGASLLPFRGYGIQEILLGCLCPVVFL--- 57
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ F G GD+KL T ++ G +L+ + GG+LS+F + +
Sbjct: 58 YPLFCMGAFGAGDIKLFAVTGLFLGGLNIYLAAV--SFAAGGVLSLFQMLSDKSLIPRLV 115
Query: 133 FGMFVPKSFLMKNKI 147
+ + K
Sbjct: 116 CFYSYLAGCIHERKF 130
>gi|87299157|emb|CAJ76216.1| competence transcription factor C [Bacillus sp. Ob 01b]
gi|87299161|emb|CAJ76218.1| competence transcription factor C [Bacillus sp. Ob 19]
Length = 186
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 36/108 (33%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I L + + + ++ + + + C +GG
Sbjct: 79 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
GD+KLL+ G F+ + I R+
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLAPCFSLCFFGIGIGLKRIEVRKPL 186
>gi|330816712|ref|YP_004360417.1| Peptidase A24A, prepilin type IV [Burkholderia gladioli BSR3]
gi|327369105|gb|AEA60461.1| Peptidase A24A, prepilin type IV [Burkholderia gladioli BSR3]
Length = 166
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 2/151 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ I + A++D IPN + + L L++A + L ++G
Sbjct: 1 MILLLSVGIFLAWVALVAIADFRYRRIPNSLVVAGLICALVSASTGHNPFGNPLLGAIIG 60
Query: 66 L-IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ F+ F FFAF +MG DVK+ W G F ++F + G I ++ I+ +
Sbjct: 61 AMVAFVGLFPFFAFRMMGAADVKVFVVLGAWCGVIQLFWCWVFASLVAG-IHALGIMYLT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
+ + PY + +
Sbjct: 120 GASVRSLWQRNGAAFALGGFRGAPYAAFLVI 150
>gi|90411209|ref|ZP_01219222.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK]
gi|90328055|gb|EAS44376.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK]
Length = 168
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 13/159 (8%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-----FLLGMDYELIALHLLVGLI 67
L+ ++++AL DL IPN +++ L A F+ +D+ + L+ ++
Sbjct: 3 LVILSVVIYSALYDLRENKIPNSAVVILALFGLTQAIISSLFIGSLDFHHLTDALIGFIV 62
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL------ 121
++ + G GD KLL + + G+ L V G + + ++
Sbjct: 63 GLLVSIILHYLGLFGAGDAKLLAALGIVVGFPNILLLISMSVIFSGVLSLLLMICKHEFI 122
Query: 122 --TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
R F + N +P G AI + L
Sbjct: 123 PNFRRWANIIFYQFYQSPQSDSIAVNAVPMGGAILLATL 161
>gi|237794671|ref|YP_002862223.1| type IV leader peptidase family protein [Clostridium botulinum Ba4
str. 657]
gi|229263702|gb|ACQ54735.1| type IV leader peptidase family protein [Clostridium botulinum Ba4
str. 657]
Length = 252
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 18/144 (12%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIM 81
DL + + ++++I + ++ + + V L +I F M
Sbjct: 111 FIDLDTTDVYSKITISAIIIGVIYTLIEKFYFGYGIKTYMYAVLLCTTVIGTIIFTTKGM 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD+ + +++ G+ + ++ LFF I G ++ +F++ +
Sbjct: 171 GSGDLDIYIIVSLFLGFKITAMT-LFFSFIFGALIGIFLIISKRK--------------- 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSY 165
K+ IP+G I+M + S
Sbjct: 215 TKKDCIPFGPFIAMASIFSILFGD 238
>gi|227114874|ref|ZP_03828530.1| hypothetical protein PcarbP_18015 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 183
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 19/169 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--------GMDYELIALHLLV 64
++ CL++ +DL I N+ +++L +L + + + L
Sbjct: 11 VLLMGCLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGALDMLALQKALWALPG 70
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL-------- 116
V ++ F F +G GDVKL++ +W G + + G +
Sbjct: 71 AAAVLVVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIVFVMVTALAGGVLALSLPLLNT 130
Query: 117 ---SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+V + M + IPYG+AI+ G +
Sbjct: 131 VPTAVAMGIQTANRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVLI 179
>gi|283778870|ref|YP_003369625.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
gi|283437323|gb|ADB15765.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
Length = 177
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 14/150 (9%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
+ D + IPN +++ LL + L + + I F + + G
Sbjct: 20 VLDYRTRKIPNWLTVPAAVLGLLYSSLAPAGVGPLL-SVAGFAIGFSLLLLPWLLGGGGM 78
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK---- 139
GDVKLL + W G + F V + + + M G ++
Sbjct: 79 GDVKLLAALGAWTGPLTILVIFAIAVGLACVMAIGVMTITAMSHGFSRARGQYLNSGSGG 138
Query: 140 ---------SFLMKNKIPYGIAISMGGLIS 160
+K +P+G+ +++ ++
Sbjct: 139 QNVAAEGETPRRVKRVLPFGVPVAIATVLV 168
>gi|221197778|ref|ZP_03570824.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M]
gi|221204664|ref|ZP_03577681.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2]
gi|221175521|gb|EEE07951.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2]
gi|221181710|gb|EEE14111.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M]
Length = 166
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 2/151 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M F A SD+ +PN + + L L+AFL + + L +G
Sbjct: 1 MAQLIFIGAFLAWAAFVAASDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIG 60
Query: 66 -LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI I FF +MG D+K+ W G + L ++ GI ++ ++ V
Sbjct: 61 MLIGLIAFVPFFLLRVMGAADLKVFAVLGAWCG-AHALLWLWIVASLAAGIHALVLMLVS 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
PY +
Sbjct: 120 RTPIRALWPQGQPVLMLGGHRATPYAACLVA 150
>gi|163751741|ref|ZP_02158959.1| hypothetical protein KT99_12229 [Shewanella benthica KT99]
gi|161328393|gb|EDP99552.1| hypothetical protein KT99_12229 [Shewanella benthica KT99]
Length = 191
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 51/156 (32%), Gaps = 12/156 (7%)
Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
+ A + DL+ IPN++ ++ + + + L + FII F F
Sbjct: 15 AFFIAAIVMDLYKEKIPNKLCLLAIFCGFAINAYYAQ-LQGALMALFGFALAFIILFPTF 73
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----------LFFVAILGGILSVFILTVRM 125
I+G GD+KL+ G S L + G + + R
Sbjct: 74 ILRILGAGDIKLMMGIGALMGPQLLVWSLAYGIVAGAGTSLLLIIWKTGFTGMAMTLKRY 133
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
++PY A+++G L +
Sbjct: 134 WDCFYLRCYFKPEAGEAAGLRVPYAPALALGWLWAC 169
>gi|70734191|ref|YP_257831.1| hypothetical protein PFL_0689 [Pseudomonas fluorescens Pf-5]
gi|68348490|gb|AAY96096.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
Length = 155
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 5/151 (3%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
F + L AL DL I N +++ + G + ++ +
Sbjct: 3 FWVLWVWLAICALQDLRQRHIANGLTLGAALLATVYLLWSGTTWLGAGASQGGWALLLAL 62
Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
F +A MG GDVKL+ + + G +F+ A L ++
Sbjct: 63 LFTLPGYASGRMGAGDVKLMAALGLASGPLYLLGTFI---AAGLCSLLWLLVLKLWPQQK 119
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++ K P+ + G +++
Sbjct: 120 QALDTPVAGRAGRGSKKYPFAPFVLAGMVLT 150
>gi|294140771|ref|YP_003556749.1| type IV leader peptidase family [Shewanella violacea DSS12]
gi|293327240|dbj|BAJ01971.1| type IV leader peptidase family [Shewanella violacea DSS12]
Length = 195
Score = 51.0 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
S ++ + A + DL+ IPN++ ++ + S E + + +
Sbjct: 11 SLQLMLAGAFFIAAIVMDLYKEKIPNKLCLLAIFSGFAINAYYAQ-LEGVLMAFFGFALA 69
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL------- 121
FII F F F I+G GD+KL+ G S + + G + I+
Sbjct: 70 FIILFPTFLFRILGAGDIKLMMGIGALMGPDLLVASLAYGIVAGAGTSLLLIIWKTGFSG 129
Query: 122 ----TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
R ++PY A+++G L +
Sbjct: 130 LAKTLKRYWDCFYLRSYFKPEPGEAAGLRVPYAPALALGWLWAC 173
>gi|307730009|ref|YP_003907233.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003]
gi|307584544|gb|ADN57942.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003]
Length = 173
Score = 51.0 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 2/151 (1%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHL 62
S M S + A+SD S I N + + L + L A + A
Sbjct: 6 SAMQVSIALFLFMIWCACVAISDCRSRRISNGLVVTGLIAAFLCALFGICPFGISAAQAA 65
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + FA +MG DVK+ W G + L ++L G+ ++++L
Sbjct: 66 AGAAVGLAVLLPLFALGVMGAADVKVFAVLGAWCGI-HALLGLWAVASVLAGLHALWVLA 124
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
+ P+ +
Sbjct: 125 AARPRIASLSGRRAPTFELAGRRATPFAACL 155
>gi|78779569|ref|YP_397681.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Prochlorococcus marinus str. MIT 9312]
gi|78713068|gb|ABB50245.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Prochlorococcus marinus str. MIT 9312]
Length = 282
Score = 51.0 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 28/152 (18%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLL------------GMDYELIALHLLVGLIVFIICF 73
D IPN + ++ L ++ ++ L L+ +++
Sbjct: 138 DYEFLWIPNSIIMIGFLFGLASSIFSAIVNDQNIVIQLFVNLISGILGFLIIILIMKSGE 197
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
F MG GD KL W G +S I G + + + T ++ +
Sbjct: 198 LVFKKPSMGLGDAKLAGMIGFWIGLPGVIISIWLSFIISGLFVILGLATKKIKKGQL--- 254
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
IP+G +S+ G + +
Sbjct: 255 -------------IPFGPFLSISGFLIWLFGE 273
>gi|325518462|gb|EGC98161.1| prepilin peptidase [Burkholderia sp. TJI49]
Length = 165
Score = 51.0 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 2/158 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M I F + D+ I N + L + + + L+G
Sbjct: 1 MQRLFFAGIFLVWASFVGIGDVRFRRIQNSLVFAGLIGAFVCGAVNENPFGTSITQALIG 60
Query: 66 LIVFIICF-CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
V +I F FF +MG DVK+ W G + L F +I G+ +++++ +
Sbjct: 61 ASVGLIGFSPFFVLRLMGAADVKVFAVLGAWCG-GQALLWFWVVASIAAGLHALWLMLLS 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + PYG + + +
Sbjct: 120 RTSIAALCRRGTPAMALGGRRATPYGAFLVLPAAVWLL 157
>gi|147669812|ref|YP_001214630.1| peptidase A24A domain-containing protein [Dehalococcoides sp. BAV1]
gi|146270760|gb|ABQ17752.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Dehalococcoides sp. BAV1]
Length = 244
Score = 51.0 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 21/174 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLL 63
V + L+ + + DL +I N + ++ LL + L ++
Sbjct: 87 VELGISLLYLCVFITLFVIDLEKGLILNVIIYPLMVLALLLSPLYLQGDGLLANLSSSFF 146
Query: 64 VGLIVFIICFCFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
GL F + + + MG GD+K+ + G+ F++ + + G + +L
Sbjct: 147 GGLTGFGLFLLIYIASRGGMGEGDIKMAGFIGLVCGFPNIFVAVFAGIVLGGLAAAGLML 206
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ + IP+G +++G + + + L+
Sbjct: 207 SGKRRK----------------GQTIPFGPFLAVGAVTAMLFGSQIMEWYLALA 244
>gi|167767555|ref|ZP_02439608.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1]
gi|167710847|gb|EDS21426.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1]
gi|291558487|emb|CBL37287.1| Flp pilus assembly protein, protease CpaA [butyrate-producing
bacterium SSC/2]
Length = 167
Score = 51.0 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L+ AA+ D IPN+++ L+ A + GM + + +L +V I C
Sbjct: 6 LLFLIMAAIYDYRDFKIPNKLNGAGALITLVLAGVSGMKAADMMIGVL---VVLISCGLL 62
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F +GGGDVKLL A+ G + FL I GI +V L R +
Sbjct: 63 FYIGCLGGGDVKLLMVCAISIG--RAMPRFLILSFICNGIYAVIFLWKRKNFHLRLFRL 119
>gi|90412178|ref|ZP_01220184.1| Hypothetical membrane protein [Photobacterium profundum 3TCK]
gi|90326902|gb|EAS43287.1| Hypothetical membrane protein [Photobacterium profundum 3TCK]
Length = 145
Score = 51.0 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 14/155 (9%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ P +++ D+ I N V + L+ AF +A ++ +I+ +I
Sbjct: 5 LQLMPLLMLWVTYLDIRYRRISNIVCAAVFSLSLILAFSQH----QLADGIISSIIMLLI 60
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F FNI+ GD KL ++ AV + F G + ++++ ++I P
Sbjct: 61 SLLLFYFNIVAAGDGKLASAFAVALSPQQLISALYFTSLFGGVVAVIYLIKYQLIQRSSP 120
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+PYG+AI+ G + SYL
Sbjct: 121 ----------EKARGLPYGVAIACGFGLQIFASYL 145
>gi|296129675|ref|YP_003636925.1| peptidase A24A domain protein [Cellulomonas flavigena DSM 20109]
gi|296021490|gb|ADG74726.1| peptidase A24A domain protein [Cellulomonas flavigena DSM 20109]
Length = 275
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 53/174 (30%), Gaps = 25/174 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSF-LLTAFLLGMDYELIALHLLVGLIV- 68
L V L DL +P+R+ + +L A L V
Sbjct: 116 AVLYLVAISVALTLIDLDVKRLPDRIVLPAYVVAPVLLALASWNPGGPSDWGALGRAAVG 175
Query: 69 ------FIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFI 120
MG GDVKL ++ GW + + F +LGG + +
Sbjct: 176 CVVLYVVYFVLVLVYPAGMGFGDVKLAGVLGLYLGWVGWGALVVGWFAAFLLGGAFGLVL 235
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ +R + K+ I +G + +G + + +GL
Sbjct: 236 IVLRRVGP---------------KSGIAFGPWMILGAFVGLAVGESLWSSYLGL 274
>gi|294102193|ref|YP_003554051.1| peptidase A24A prepilin type IV [Aminobacterium colombiense DSM
12261]
gi|293617173|gb|ADE57327.1| peptidase A24A prepilin type IV [Aminobacterium colombiense DSM
12261]
Length = 158
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 15/160 (9%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L +A DL +PN ++ +L + +L G +++ L I
Sbjct: 3 WVTLAVLCWAGFYDLKYKKVPNWLTYGLLLAAILFHSFYG----AVSMSLFGAGIGLGWF 58
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------- 124
+ MG GDVKLL + W + + + ++ GGI+ + + R
Sbjct: 59 LIPYLLGGMGAGDVKLLAAAGAMAAWPGALY-VVLYSSVAGGIVVIALTLKRVDFQDFWV 117
Query: 125 --MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+++ K K+PY +AI++G I
Sbjct: 118 ALAGGPRRFFKSIWMSGRERRKEKVPYALAIAIGYAIYLL 157
>gi|206895702|ref|YP_002247348.1| leader peptidase PilD [Coprothermobacter proteolyticus DSM 5265]
gi|206738319|gb|ACI17397.1| leader peptidase PilD [Coprothermobacter proteolyticus DSM 5265]
Length = 245
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 19/160 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
F+I + + DL + +IP + + ++ + Y+ L L
Sbjct: 96 EMIFFIIFVCFSIAISWIDLQTMLIPEVLILPLIA---VLVLSRTYTYQWFILTGAFSLF 152
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + + G GDV + + + F+ A+ + I +
Sbjct: 153 LIHLIIHLIVPDGFGMGDVFYAAAVGLMLSPHLLLVWFVTTYALGTIVGLSLIGLNK--- 209
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
K +P+ + G LI+Y
Sbjct: 210 -------------MERKTPLPFAPIMFAGTLITYFFGSYI 236
>gi|326571905|gb|EGE21910.1| type IV prepillin peptidase PilD [Moraxella catarrhalis BC8]
Length = 258
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 23/170 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVG 65
+ A+ +I + + A D ++P+R+ + + L+ + +VG
Sbjct: 104 IIGALSVIFVWFGLGLAGIDYRVQLLPDRLVLPLGMIVLMANGFGVLTTPVDAIFGAVVG 163
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V + + + MG GD KLL++ W G + A+ +
Sbjct: 164 FLVLWLINALYRLARRQDGMGLGDAKLLSACGAWLGIWQLPIIVFIAAALGVVAGIII-- 221
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+ + +G + M + + +
Sbjct: 222 ----------------QRHQGKASAFAFGPYLIMAAWVVLLFGEYIQAYI 255
>gi|254225086|ref|ZP_04918700.1| leader peptidase TcpJ [Vibrio cholerae V51]
gi|125622473|gb|EAZ50793.1| leader peptidase TcpJ [Vibrio cholerae V51]
Length = 253
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 23/162 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
+ S V L F L + D S ++PN ++ + + + E +
Sbjct: 106 IDSFVLLGLYFILFNLFIIDFKSMLLPNLLTYPIFILAFIYVQQNPTLTVESSIMGGFAA 165
Query: 66 LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
I+ + ++MG GD+KL T+ G FL I +
Sbjct: 166 FIISYVSNFIVRLFKRIDVMGAGDIKLYTALGTLIGVEFVPYLFLLSSIIAFIHWFFARV 225
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ R IP G +I + +I +
Sbjct: 226 SCRYCLY------------------IPLGPSIIISFVIVFFS 249
>gi|284007788|emb|CBA73641.1| type IV prepilin-like leader peptidase [Arsenophonus nasoniae]
Length = 240
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 5/145 (3%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHL 62
S + L + V A D + +P+ + ++ LL A L
Sbjct: 80 SDFNHRVILLFFVWFSVLLAFIDHHTGYLPDLLVYPLIVLALLFHAMQSNEQLLLAIYGA 139
Query: 63 LVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
L+G ++F + FF + GD+KL+ + W G L +
Sbjct: 140 LIGYLIFWFIYGFFKLAIKRRGLAQGDIKLVAAYGAWLGIYILPYLMLLSACLGLLNYVF 199
Query: 119 FILTVRMITNHIPIFGMFVPKSFLM 143
+ +R + I +
Sbjct: 200 LWIKIRYKPDKIAFGPALASAGISL 224
>gi|54302293|ref|YP_132286.1| hypothetical protein PBPRB0613 [Photobacterium profundum SS9]
gi|46915715|emb|CAG22486.1| hypothetical protein PBPRB0613 [Photobacterium profundum SS9]
Length = 165
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----LLVGLIV 68
+ +++AAL D+ IPN +V++ L A + ++ + H LL ++
Sbjct: 1 MILSVVIYAALYDIRENKIPNHAIVVLIFLGLAQAIISSLEIGSLDFHYLTDALLGLIVG 60
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL------- 121
+ + G GD KLL + + G+ L V G + + ++
Sbjct: 61 LFVSITLHYLGLFGAGDAKLLAALGIVVGFPNILLLISMSVVFSGALSLLLMICKHEFIP 120
Query: 122 -TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
R + F + N +P G AI + L
Sbjct: 121 NFRRWANIIVYQFYQSPKADSIAINAVPMGGAILLATL 158
>gi|253996772|ref|YP_003048836.1| peptidase A24A prepilin type IV [Methylotenera mobilis JLW8]
gi|253983451|gb|ACT48309.1| peptidase A24A prepilin type IV [Methylotenera mobilis JLW8]
Length = 191
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 24/166 (14%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE---------LIALHLLVGLIVFIICFCFF 76
D+ S I N++ +V + L+ LL L + + +
Sbjct: 25 DVNSHRISNKLVLVGVFIGLVLNGLLPEGLGFNSQVPGALGWLAALKGLAVAMAVFLPLY 84
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF---------------IL 121
MG GDVKL+ + G + L + G + + ++
Sbjct: 85 LLRAMGAGDVKLMGMVGTFIGPNDVLGAVLATLVAGGVMALLVTMWSKQLGAMLQNVKLI 144
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ + K+PY +AI++G L+
Sbjct: 145 FYGSAVKLSIGQAPLMNDLPVSVRKLPYALAITLGTFTYLIWQRLY 190
>gi|170696789|ref|ZP_02887898.1| peptidase A24A prepilin type IV [Burkholderia graminis C4D1M]
gi|170138305|gb|EDT06524.1| peptidase A24A prepilin type IV [Burkholderia graminis C4D1M]
Length = 166
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLV 64
M S V L+ A+ D S I N + +V L + +L A + A
Sbjct: 1 MQVSFVLLVFMLWCACVAICDYRSRHISNVLVVVGLITAVLCALFNISPFGISAAQAAAG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + FFA +MG DVK+ W G + L ++ G+ ++++L
Sbjct: 61 AAVGLVALLPFFALGMMGAADVKVFAVLGAWCGV-HALLGLWAVASVAAGLHALWVLVAT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
+ + P+ +
Sbjct: 120 RTRVAALLQRRAPTFELAGRRSTPFATCL 148
>gi|294793879|ref|ZP_06759016.1| putative pre-pilin leader peptidase [Veillonella sp. 3_1_44]
gi|294455449|gb|EFG23821.1| putative pre-pilin leader peptidase [Veillonella sp. 3_1_44]
Length = 185
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 22/168 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
A++ + ++ A D+ ++P+ ++ ++ ++ +++ + L ++ +
Sbjct: 36 THIALYAVFSLIIIAGATIDMHYYILPDEGALALVIGGMIYSYINDQSMLVTLLS-VISV 94
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ G GD+K ++ A+W F + L +
Sbjct: 95 GTITYGLRLISRKGFGIGDIKWFSAIAIWLTPWEIICFFYVTFCVGSLYLLL-------- 146
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G + GG + +V L
Sbjct: 147 -------------TGYRNRYIPFGPFLCFGGWCALHGGSYMEVLYQWL 181
>gi|332749712|gb|EGJ80127.1| type IV leader peptidase family protein [Shigella flexneri 4343-70]
gi|332996479|gb|EGK16106.1| type 4 prepilin-like proteins leader peptide-processing enzyme
domain protein [Shigella flexneri VA-6]
gi|332996724|gb|EGK16349.1| type IV leader peptidase family protein [Shigella flexneri K-272]
gi|332997276|gb|EGK16892.1| type IV leader peptidase family protein [Shigella flexneri K-218]
gi|333013131|gb|EGK32507.1| type IV leader peptidase family protein [Shigella flexneri K-227]
Length = 114
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 19/127 (14%)
Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
+ +VG F + + + +G GDVK L + W W
Sbjct: 1 MFYQVCHPDGLADALWGAIVGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAF 60
Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ G + + +L +KN +P+G ++ G +
Sbjct: 61 LPRLVFLAASFACGAVVIGLLMRGKE---------------SLKNPLPFGPFLAAAGFVI 105
Query: 161 YPDSYLF 167
DS L
Sbjct: 106 GWDSLLI 112
>gi|257784114|ref|YP_003179331.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469]
gi|257472621|gb|ACV50740.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469]
Length = 162
Score = 50.6 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSI---VMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + A++SD+ IPNR+ I + +L L + V
Sbjct: 4 FVILVMYICASISDMRDRTIPNRIPIMLVFLWPIWLAVNKNRAEMIMSSLWSELFVICVL 63
Query: 70 IICFCFFAFNI----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
I+ F +GGGD+KL+ ST ++ +F+ + +F +
Sbjct: 64 ILVSIVTKFIGHMSSIGGGDIKLILSTCLYLEIKETFVFLFLANILGVMFSFLFTIWSNF 123
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ ++ P+ +++G ++
Sbjct: 124 SKRRHKNSQENTSSNNILMYTFPFAPFLTIGVALALF 160
>gi|257789823|ref|YP_003180429.1| peptidase A24A domain-containing protein [Eggerthella lenta DSM
2243]
gi|325832312|ref|ZP_08165311.1| putative type IV prepilin leader peptidase [Eggerthella sp. HGA1]
gi|257473720|gb|ACV54040.1| peptidase A24A domain protein [Eggerthella lenta DSM 2243]
gi|325486148|gb|EGC88602.1| putative type IV prepilin leader peptidase [Eggerthella sp. HGA1]
Length = 297
Score = 50.6 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 30/172 (17%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V +A +L+ L+ AL DL + +IPN + +L++ + + +
Sbjct: 109 VQTAAYLVLVCILMAVALVDLDTFIIPNGFVVAGCVLWLVSIWFMPAPRVDAFSVGSLFS 168
Query: 67 I-------------------------VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
+ + +GGGDVKLL ++ G S
Sbjct: 169 GWVHPGGAVALDGIVGAAVVAGGVLVLSVAFDKVTKRRSLGGGDVKLLFMVGLFLGLAGS 228
Query: 102 FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
L+ L ++ + + + + IP+G AI
Sbjct: 229 MLNLLMAC-----LMGLAFAFAQGFSVPSSPGEGEGEGESVRTRAIPFGPAI 275
>gi|126650162|ref|ZP_01722395.1| leader peptide processing enzyme [Bacillus sp. B14905]
gi|126593334|gb|EAZ87296.1| leader peptide processing enzyme [Bacillus sp. B14905]
Length = 173
Score = 50.6 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ V L LV +SD +IP+++ + L ++ L + +L +
Sbjct: 21 LEFIVALSFISLLVIIVVSDFIYLLIPDKILLFFLPFLVIGRVLSPLTPWWDSLVGALVG 80
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + MGGGD+K + G + L+ I I V +L +
Sbjct: 81 FGILYSIAVLSKGGMGGGDIKFFFLIGLVLGTIHTLLTLFIAAIIGMIIGIVVLLKHKQ- 139
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ IP+G +I++ I Y F
Sbjct: 140 ---------------GRQTHIPFGPSIALAATIVYFYGDSFI 166
>gi|312968353|ref|ZP_07782563.1| type 4 prepilin-like s leader peptide-processing enzyme domain
protein [Escherichia coli 2362-75]
gi|312287178|gb|EFR15088.1| type 4 prepilin-like s leader peptide-processing enzyme domain
protein [Escherichia coli 2362-75]
Length = 114
Score = 50.6 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 19/120 (15%)
Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
+ ++G F + + + +G GDVK L + W WT
Sbjct: 1 MFYQVCYPDGLADALWGAIIGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHTWTF 60
Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ G + + +L +KN +P+G ++ G +
Sbjct: 61 LPRLVFLAASFACGAVVIGLLMRGKE---------------SLKNPLPFGPFLAAAGFVV 105
>gi|325110058|ref|YP_004271126.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
5305]
gi|324970326|gb|ADY61104.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
5305]
Length = 434
Score = 50.6 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/212 (14%), Positives = 55/212 (25%), Gaps = 61/212 (28%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL--------- 60
FL+ L A D +IP+ V+ + ++ L +
Sbjct: 145 LYFLLLVEALFVATFIDFDLWIIPDGVTFPAMIVGVVGQLLGVGFFLAPVWVQDPELVRL 204
Query: 61 ---------------------------------------HLLVGLIVFIICFCFFAFNIM 81
+ V II M
Sbjct: 205 GQQLVPVLQDWPITGWIPRWVHAHHLGHAAAVSAVGFVVGGGIVWAVRIIGGLVLRREAM 264
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GDV L+ + GW P + F + +L++ + + IP
Sbjct: 265 GFGDVILMAMIGAFIGWQPVTIVFFLAPLMALLVLALISVMRFLSLLKIPP--------- 315
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++PYG +S+ L+ A+
Sbjct: 316 ----ELPYGPYLSLATLVVLFGWKWIWPAVER 343
>gi|22127356|ref|NP_670779.1| hypothetical protein y3482 [Yersinia pestis KIM 10]
gi|45442770|ref|NP_994309.1| hypothetical protein YP_3009 [Yersinia pestis biovar Microtus str.
91001]
gi|108809088|ref|YP_653004.1| hypothetical protein YPA_3097 [Yersinia pestis Antiqua]
gi|108810718|ref|YP_646485.1| hypothetical protein YPN_0553 [Yersinia pestis Nepal516]
gi|145597789|ref|YP_001161865.1| hypothetical protein YPDSF_0479 [Yersinia pestis Pestoides F]
gi|150260277|ref|ZP_01917005.1| putative prepilin peptidase [Yersinia pestis CA88-4125]
gi|165939084|ref|ZP_02227636.1| type IV prepilin peptidase family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166212075|ref|ZP_02238110.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167419298|ref|ZP_02311051.1| type IV prepilin peptidase family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425122|ref|ZP_02316875.1| type IV prepilin peptidase family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466372|ref|ZP_02331076.1| membrane protein [Yersinia pestis FV-1]
gi|218927884|ref|YP_002345759.1| hypothetical protein YPO0695 [Yersinia pestis CO92]
gi|229837377|ref|ZP_04457540.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A]
gi|229840589|ref|ZP_04460748.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842861|ref|ZP_04463013.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900913|ref|ZP_04516037.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516]
gi|270487707|ref|ZP_06204781.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Yersinia pestis KIM D27]
gi|294502761|ref|YP_003566823.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003]
gi|21960440|gb|AAM87030.1|AE013951_5 hypothetical [Yersinia pestis KIM 10]
gi|45437636|gb|AAS63186.1| putative membrane protein [Yersinia pestis biovar Microtus str.
91001]
gi|108774366|gb|ABG16885.1| membrane protein [Yersinia pestis Nepal516]
gi|108781001|gb|ABG15059.1| putative membrane protein [Yersinia pestis Antiqua]
gi|115346495|emb|CAL19370.1| putative membrane protein [Yersinia pestis CO92]
gi|145209485|gb|ABP38892.1| membrane protein [Yersinia pestis Pestoides F]
gi|149289685|gb|EDM39762.1| putative prepilin peptidase [Yersinia pestis CA88-4125]
gi|165913040|gb|EDR31665.1| type IV prepilin peptidase family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166206821|gb|EDR51301.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166963292|gb|EDR59313.1| type IV prepilin peptidase family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167055885|gb|EDR65666.1| type IV prepilin peptidase family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229682252|gb|EEO78344.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516]
gi|229690128|gb|EEO82185.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696955|gb|EEO87002.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705500|gb|EEO91510.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A]
gi|262360793|gb|ACY57514.1| hypothetical protein YPD4_0605 [Yersinia pestis D106004]
gi|262364738|gb|ACY61295.1| hypothetical protein YPD8_0605 [Yersinia pestis D182038]
gi|270336211|gb|EFA46988.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Yersinia pestis KIM D27]
gi|294353220|gb|ADE63561.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003]
gi|320016742|gb|ADW00314.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 140
Score = 50.6 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
++ ++ ++ L+F SD+ +I N+ I + + ++ + ++ + +++
Sbjct: 2 DVIRLSLIVLIVSQLLFVCYSDIRHRIISNKFIISISFNAIIFSLVMHHT-----VSIII 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
++ I + F FN+MGGGDVKL+T + S ++ + G ++ V +L R
Sbjct: 57 PIVALFIGYIIFHFNVMGGGDVKLITVLLLALTAEQSLNFIIYTAVMGGVVMVVGLLINR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ K +PY +AI+ G L
Sbjct: 117 ---------------VDIQKRGVPYAVAITAGFL 135
>gi|300723909|ref|YP_003713220.1| bifunctional prepilin peptidase leader peptidase/ methyl
transferase (fragment) [Xenorhabdus nematophila ATCC
19061]
gi|297630437|emb|CBJ91102.1| bifunctional prepilin peptidase: leader peptidase; methyl
transferase (General Secretory Pathway) (fragment)
[Xenorhabdus nematophila ATCC 19061]
Length = 148
Score = 50.6 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 5/127 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
+ L+ ++ D+ + ++P+ +++ +L LL + + G +
Sbjct: 1 MFFCSTLLLLSVIDIKTYLLPDVITLPLLWLGLLFNVDSHWIPIKSAIYGAISGYLFLWF 60
Query: 72 CFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ +G GD+KL + W G + L V L +
Sbjct: 61 LYWLCWSFLKKEGIGYGDLKLTAAIGAWLGVEMIPILLLMSSLSGLFSFIVIGLKRKSYP 120
Query: 128 NHIPIFG 134
+ I
Sbjct: 121 DFIAFGP 127
>gi|218676246|ref|YP_002395065.1| hypothetical protein VS_II0468 [Vibrio splendidus LGP32]
gi|218324514|emb|CAV25986.1| putative membrane protein [Vibrio splendidus LGP32]
Length = 152
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 16/159 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M +V + L F D + IPN ++ L+ + L+ ++ +
Sbjct: 1 MNIDLLVNITLISTNFLILSFICFFDGWHRKIPNNLNK----IALIFSHLVALNNGYLMS 56
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L + ++ F++ F + ++GGGDVKLL + + ++ + + G ++
Sbjct: 57 SLPIAILCFVVFFILWYLKVIGGGDVKLLCALIISIQPNLVTITLICIGFLGGLLVFAMY 116
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ ++ IPYGI I++
Sbjct: 117 IVGKVRGLP------------SFTKGIPYGIPIALSCFF 143
>gi|104779908|ref|YP_606406.1| prepilin peptidase; typeII/IV secretion [Pseudomonas entomophila
L48]
gi|95108895|emb|CAK13591.1| putative prepilin peptidase; typeII/IV secretion [Pseudomonas
entomophila L48]
Length = 156
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 4/150 (2%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L D+ I N +++ + G L F G + + ++
Sbjct: 4 IVLLMWLALCTEQDVRERQISNTLTLGVAGCALAWLFATGHSWIGADASEAGWALAIVML 63
Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ G GDVKL+ + A+ +F+ + + ++ +
Sbjct: 64 LTLPGYMLGRFGAGDVKLMGALALATSPQYVLGTFIGAGITVLAWMFGRRRLWTLLNPKV 123
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + K P+ + G L++
Sbjct: 124 KKRLQKLAEEVGDKQ--PFAPYVLAGFLLT 151
>gi|225351466|ref|ZP_03742489.1| hypothetical protein BIFPSEUDO_03061 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157810|gb|EEG71093.1| hypothetical protein BIFPSEUDO_03061 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 278
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 22/155 (14%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI-----ALHLLVGL 66
+ + A DL +I N V + L + L L + A+ + L
Sbjct: 120 LYVFAAVSIVIAYIDLDHHLILNVVLLPTLIATLALLALASLGTNEWNRLGRAVICAIVL 179
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTVR 124
F + MG GD+KL + GW + F +GG LS+ ++ +
Sbjct: 180 GAFYLLLSIIWKGGMGDGDIKLAFILGLITGWLGWSQFIIGAFAAFFIGGFLSLVLIIGK 239
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ M IP+G ++ +G +
Sbjct: 240 KV---------------DMHGGIPFGPSMLLGIWL 259
>gi|331268975|ref|YP_004395467.1| prepilin peptidase, type IV [Clostridium botulinum BKT015925]
gi|329125525|gb|AEB75470.1| prepilin peptidase, type IV [Clostridium botulinum BKT015925]
Length = 249
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 21/168 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYEL 57
+K + +L L+ D + + + I++ F+L + L + +
Sbjct: 88 LKYGLTIEFVKYLFLCSFLIIIGCIDYNTTEVYFSTTSIGIIVGIIFILINWYLNLPIKT 147
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
L ++ +V + + MG GDV++ ++++ G + L LF I+G I+
Sbjct: 148 YFLGAIIAGMVISLIIILT--DGMGWGDVEICVLSSIYLGARLTIL-MLFLSFIIGAIVG 204
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
V ++ + K+ I +G +I + L +
Sbjct: 205 VLLIIYKKK---------------SRKDYIAFGPSIVIATLTTIYAGE 237
>gi|317489282|ref|ZP_07947799.1| bacterial Peptidase A24 domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|316911683|gb|EFV33275.1| bacterial Peptidase A24 domain-containing protein [Eggerthella sp.
1_3_56FAA]
Length = 297
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 60/193 (31%), Gaps = 30/193 (15%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V +A +L+ L+ AL DL + +IPN + +L++ + + +
Sbjct: 109 VQTAAYLVLVCILMAVALVDLDTFIIPNGFVVAGCVLWLVSIWFMPAPRVDAFSVGSLFS 168
Query: 67 I-------------------------VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
+ + +GGGDVKLL ++ G S
Sbjct: 169 GWVHPGGAVALDGIVGAAVVAGGVLVLSVAFDKVTKRRSLGGGDVKLLFMVGLFLGLAGS 228
Query: 102 FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
L+ L ++ + + ++ + IP+G AI+ +
Sbjct: 229 MLNLLMAC-----LMGLAFAFAQGLSVPSSPGEGEGEGESVRTRAIPFGPAIAAATAFTL 283
Query: 162 PDSYLFKVALMGL 174
GL
Sbjct: 284 LAGPTILTWYAGL 296
>gi|220918101|ref|YP_002493405.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955955|gb|ACL66339.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans
2CP-1]
Length = 151
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 11/149 (7%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
+ AA SDL S IPN +S+ + + L + A L+ I + +
Sbjct: 1 MAVAAASDLASRRIPNALSLTVAVAGLAAST----GPLQAASGLVASAICLALMLPLWRR 56
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+GGGDVKLL + A W F+ L G + + + +
Sbjct: 57 RAIGGGDVKLLAAAAAWVRLEHLFVFGLAVALCGGLLALIVLARASAAELRLVRANAVAS 116
Query: 139 KSFLM-------KNKIPYGIAISMGGLIS 160
+ IPYG+AI++G I+
Sbjct: 117 LAMSRPAVARSAGTSIPYGVAIALGAAIA 145
>gi|87199103|ref|YP_496360.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
DSM 12444]
gi|87134784|gb|ABD25526.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
DSM 12444]
Length = 166
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
+D+ I N ++ + + + G+ + IA+ + + F++ FA +MG
Sbjct: 27 FTDIRRRQIDNWLNAAIALAAPAYWWAAGLSLWPDIAMQVGLAAATFLVLAGLFALRLMG 86
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GGDVKLL++ A+W F+ L +++LGG L++ +
Sbjct: 87 GGDVKLLSALALWLAP-GMFVKLLVIMSLLGGFLTIVFAAWH------------YTVTRR 133
Query: 143 MKNKIPYGIAISMGGLISY 161
KIPYG+AI+ GLI+
Sbjct: 134 RDAKIPYGVAIACAGLITL 152
>gi|89053480|ref|YP_508931.1| peptidase A24A, prepilin type IV [Jannaschia sp. CCS1]
gi|88863029|gb|ABD53906.1| peptidase A24A prepilin type IV [Jannaschia sp. CCS1]
Length = 167
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 4/161 (2%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ + + ++ ALSDL IPN + + G FL+T + +
Sbjct: 3 LTLTSLEALWFLPFAIPICIWVALSDLRQMRIPNVAVLALTGGFLITGLFA-LPMDAYLW 61
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L IV + F + ++G GD K + A + F + ++ +I
Sbjct: 62 RLAALGIVLLAGFVITSLGLVGAGDSKFAAAMAPFIAPGDYLFFLALFSLV---LIGSWI 118
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
S+ P G+A++ +I
Sbjct: 119 THRSAGRVPAVRRATAHWSSWEQGKLFPMGVALAGALVIYL 159
>gi|260424901|ref|ZP_05779042.1| putative type IV prepilin leader peptidase [Dialister invisus DSM
15470]
gi|260403585|gb|EEW97132.1| putative type IV prepilin leader peptidase [Dialister invisus DSM
15470]
Length = 210
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
A D + + + S+ + + L + ++ A + MG
Sbjct: 73 AWEDWKTGYVSDHWSVFLAAAGLGHNVFYSRLTDGFISCA--FVLGLYGLLFLLAKHAMG 130
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GD+ L + A+W L + V + R
Sbjct: 131 AGDIFLSGAAALWLAPVSVPLFLFLSASSAAMAGMVLLFLGR----------------MS 174
Query: 143 MKNKIPYGIAISMGGLISY 161
+ IP+ I++GG+ +Y
Sbjct: 175 RREGIPFCPFIALGGVAAY 193
>gi|153854853|ref|ZP_01996076.1| hypothetical protein DORLON_02082 [Dorea longicatena DSM 13814]
gi|149752555|gb|EDM62486.1| hypothetical protein DORLON_02082 [Dorea longicatena DSM 13814]
Length = 178
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 16/158 (10%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
L L AL+D + IP R I +L L G + + ++
Sbjct: 31 LLCYLGILCRVALTDHSTRKIPGRYHIYILLIAAADMVLTGNSDLYNRIPGAAAVAGPML 90
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
GGGD+K + + G S + + GG + + +
Sbjct: 91 VLSILIPGAFGGGDIKFMAVSGFLLGKEKIICSMACAIMLAGGYCLIMLKCGK------- 143
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
K++ +G + +G +++ +
Sbjct: 144 ---------LTRKDEFAFGPFLVLGIMMTLFAGDQLIL 172
>gi|308050062|ref|YP_003913628.1| peptidase A24A prepilin type IV [Ferrimonas balearica DSM 9799]
gi|307632252|gb|ADN76554.1| peptidase A24A prepilin type IV [Ferrimonas balearica DSM 9799]
Length = 177
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 13/158 (8%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ A + DL + IPN + +L F +F L A L G V ++
Sbjct: 14 LIVVGFALALVCDLRTQRIPN--VLALLALFSGLSFHLYHSGLAGAGIALAGAAVALLMV 71
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL-----------SVFILT 122
+A +G GDVKL+ G S + + +
Sbjct: 72 PLYAKGFIGAGDVKLMMGMGALMGPVLSLWVLALGIVCGALVAPLLAVNQVGWDGLTATA 131
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
R + + ++PY A++MG +++
Sbjct: 132 KRYYQCFMTRQYFAPEQGEAAATRVPYAPALAMGWVLT 169
>gi|56752168|ref|YP_172869.1| prepilin peptidase / N-methyltransferase [Synechococcus elongatus
PCC 6301]
gi|81300744|ref|YP_400952.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Synechococcus elongatus PCC 7942]
gi|56687127|dbj|BAD80349.1| prepilin peptidase / N-methyltransferase [Synechococcus elongatus
PCC 6301]
gi|81169625|gb|ABB57965.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
[Synechococcus elongatus PCC 7942]
Length = 262
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 25/171 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF---------LLGMDYELIALHLL 63
I L+ ++ DL + +PN ++ L + L + L
Sbjct: 105 WIFFSWLLALSVIDLDTMTLPNVLTASGLAVGVAFQLAIAPATWPVTLFWSLFVAIAALW 164
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + + ++GGGD KLL VW G L+ +
Sbjct: 165 LSDLFRWLGEFALRQPVLGGGDSKLLALLGVWLGGPKLLLALFLACLSGAIAGGIG---- 220
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ +P+G +++GG I++ + M +
Sbjct: 221 ------------RWRGTLKPMQAMPFGPFLALGGAIAWIWGAEWIDLYMRV 259
>gi|224824210|ref|ZP_03697318.1| peptidase A24A prepilin type IV [Lutiella nitroferrum 2002]
gi|224603629|gb|EEG09804.1| peptidase A24A prepilin type IV [Lutiella nitroferrum 2002]
Length = 183
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 2/121 (1%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D + IPN++ + L L L + + F++ + MG
Sbjct: 27 ITDTAARKIPNKLVLGGLAVAFLCQ-GLFFGGSGLLDGAKGMGLGFVLFLPLYLLRAMGA 85
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKL+ + G + F + GG+LS+ + + ++ + +
Sbjct: 86 GDVKLMAMVGAFTGMQDIVG-IVLFTFVAGGVLSLAFALKLKSLHRLINNMKYLTLAGMS 144
Query: 144 K 144
K
Sbjct: 145 K 145
>gi|160893684|ref|ZP_02074468.1| hypothetical protein CLOL250_01238 [Clostridium sp. L2-50]
gi|156864669|gb|EDO58100.1| hypothetical protein CLOL250_01238 [Clostridium sp. L2-50]
Length = 152
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
++ + ++ L+ + DL +IP+R + L L L
Sbjct: 6 SLLQAVQAVLFFSLLIAVSAWDLRYRIIPDRFQAGIALLSFLNFA------PGQLLGALG 59
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ I+ MGGGD+KL +T + G S + + + L R
Sbjct: 60 AVPYLIVALFCKREGGMGGGDIKLAGATGLVLGLPASLTASCLGLTGFVMYGCMVCLWNR 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
K P G ++ G Y
Sbjct: 120 FKGKRD-------------KEAFPVGPFLAGGAAAVY 143
>gi|297618083|ref|YP_003703242.1| peptidase A24A prepilin type IV [Syntrophothermus lipocalidus DSM
12680]
gi|297145920|gb|ADI02677.1| peptidase A24A prepilin type IV [Syntrophothermus lipocalidus DSM
12680]
Length = 170
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 1/134 (0%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
I L A D+ IPN + + + + L G + + L + ++
Sbjct: 3 WIMVGLLALAVYFDVRERRIPNWLVLTGVLTALGWHLYQG-GFSGLVFSLKGLGLGLLLL 61
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
FA MG GDVKLL + G F +FL+ I G I ++ + + +
Sbjct: 62 MLPFAMGGMGAGDVKLLGMVGAFKGVVFVFNAFLWMALIGGLIALAVLIREQRLGEFLVR 121
Query: 133 FGMFVPKSFLMKNK 146
G + +
Sbjct: 122 IGRGMILALTGGRA 135
>gi|125719080|ref|YP_001036213.1| Type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD [Streptococcus sanguinis SK36]
gi|125498997|gb|ABN45663.1| Type IV fimbrial biogenesis protein, prepilin cysteine protease
(C20) PilD, putative [Streptococcus sanguinis SK36]
Length = 246
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 103 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWDLLLSLLVGAGLYSLI 162
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + +
Sbjct: 163 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATI------- 215
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F F +K ++P+G A+S+ +I Y
Sbjct: 216 -------FKKFKFKLKEEVPFGPAMSIMAVILYFWG 244
>gi|302037441|ref|YP_003797763.1| putative prepilin peptidase CpaA [Candidatus Nitrospira defluvii]
gi|300605505|emb|CBK41838.1| putative Prepilin peptidase CpaA [Candidatus Nitrospira defluvii]
Length = 159
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 11/153 (7%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
L A SDL A IPN ++ +G LL ++ + LI + F+
Sbjct: 1 MLALGAASDLRCAKIPNWLTYSAMGGGLLFH-TTQEGLSGLSQSVGGLLIGIALFLAFYL 59
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GDVK + + G + + + G + I
Sbjct: 60 LGGMGAGDVKFMGAVGSMVGLSGILPAAGVTTLLGGAYAVATAIRHWGIGTGAWRILSPF 119
Query: 138 PKSFLMKN----------KIPYGIAISMGGLIS 160
L K+ YG+ I+ G +++
Sbjct: 120 LAWALTGRLALAPPDTQPKLRYGVVIAAGTVVA 152
>gi|157693208|ref|YP_001487670.1| A24 unassigned peptidase family protein [Bacillus pumilus SAFR-032]
gi|157681966|gb|ABV63110.1| possible A24 family unassigned peptidase [Bacillus pumilus
SAFR-032]
Length = 239
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 20/160 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+I V A +SDL +PN + + F + L + L+ I
Sbjct: 96 EGLFLMILCSLFVIAVVSDLLYMRVPNELFLFFFPLFAIYRTLEPLLIWWEGTASLIFCI 155
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ +F N MGG D+K+ + A FG+ P L LF I G + +
Sbjct: 156 LLFSSLDYFKPNSMGGADMKMFSVLAFCFGFKPFLL-MLFLSCITGMVYAKVF------- 207
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
SF + P+ +I++ + + +
Sbjct: 208 ------------SFRLNEPFPFVPSIAISFFLYLCGTPVL 235
>gi|332970969|gb|EGK09943.1| leader peptide processing enzyme [Desmospora sp. 8437]
Length = 152
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLL 63
+ +++ L+ A ++DL +I +R ++ L L + L L
Sbjct: 4 SLAEHLIYISLILILICATVTDLRERLIYDRFVLIGLAFALGIHLYSRHYSWTEYILTSL 63
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + +GGGD+KL G L F+ + + V L
Sbjct: 64 GAFFALALIAILTKGSAIGGGDIKLFAMIGFATGLEDFILIFMVSHVVAAIFILVVKLFR 123
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + P+ I +G L++Y
Sbjct: 124 --------------SDAVRKGTEFPFAPFILIGVLLTY 147
>gi|300853761|ref|YP_003778745.1| putative bifunctional type IV leader peptidase/N-methyltransferase
[Clostridium ljungdahlii DSM 13528]
gi|300433876|gb|ADK13643.1| predicted bifunctional type IV leader peptidase/N-methyltransferase
[Clostridium ljungdahlii DSM 13528]
Length = 249
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML---GSFLLTAFLLGMDYELIALHLL 63
+ +++ L+ + D + I + +IV L FL + G+ +
Sbjct: 98 IDIVKYVVFISILIVIGIIDFDTTDIYFKTTIVGLISAFVFLGIYYYNGLPIRTYIYGGI 157
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
G + ++ MG GD ++ ++ G +F+ LF I+G I+ V ++
Sbjct: 158 AGGGLLVLIILITK-GGMGWGDAEICLICGLFLGLKFTFV-MLFLSFIIGAIIGVILILS 215
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
K+ IP+G I+ +I+
Sbjct: 216 GKK---------------SKKDYIPFGPFITAASVIT 237
>gi|331654915|ref|ZP_08355914.1| leader peptidase HopD [Escherichia coli M718]
gi|320191647|gb|EFW66297.1| leader peptidase HopD [Escherichia coli O157:H7 str. EC1212]
gi|326344554|gb|EGD68303.1| leader peptidase HopD [Escherichia coli O157:H7 str. 1125]
gi|331046930|gb|EGI19008.1| leader peptidase HopD [Escherichia coli M718]
Length = 114
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 19/127 (14%)
Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
+ ++G F + + + +G GDVK L + W W
Sbjct: 1 MFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAF 60
Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ G + + +L +KN +P+G ++ G +
Sbjct: 61 LPRLVFLAASFACGAVVIGLLMRGKE---------------SLKNPLPFGPFLAAAGFVI 105
Query: 161 YPDSYLF 167
DS L
Sbjct: 106 GWDSLLI 112
>gi|313903193|ref|ZP_07836586.1| Prepilin peptidase [Thermaerobacter subterraneus DSM 13965]
gi|313466504|gb|EFR62025.1| Prepilin peptidase [Thermaerobacter subterraneus DSM 13965]
Length = 307
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 17/129 (13%)
Query: 47 TAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
+ VG ++F I + +G GDVKL + G ++
Sbjct: 194 AVAPGWAPWARALGAAAVGGLIFQILRWG-SRGGLGFGDVKLAAWLGFYLGPRALPVALF 252
Query: 107 FFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ G + V +LT ++ IP+G ++ GGL+ +
Sbjct: 253 TAAILGGLVAGVLLLTGCR----------------GRRDVIPFGPFLAAGGLVGWFFGEG 296
Query: 167 FKVALMGLS 175
A +GL
Sbjct: 297 LWQAYLGLG 305
>gi|317498627|ref|ZP_07956920.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316894114|gb|EFV16303.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 167
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L+ AA+ D IPN+++ L+ A + GM + + +L +V I C
Sbjct: 6 LLFLIMAAIYDYRDFKIPNKLNGAGALITLVLAGVSGMKAADMMIGVL---VVLISCGLL 62
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F +GGGDVKLL A+ G + FL I GI +V L R +
Sbjct: 63 FYIGCLGGGDVKLLMVCAISIG--RAMPRFLILSFICNGIYAVIFLWKRKNFHLRLFRL 119
>gi|194366094|ref|YP_002028704.1| peptidase A24A prepilin type IV [Stenotrophomonas maltophilia
R551-3]
gi|194348898|gb|ACF52021.1| peptidase A24A prepilin type IV [Stenotrophomonas maltophilia
R551-3]
Length = 181
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 18/168 (10%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGL 66
+ + L+ + A+SDL++ +PN + ++ + +
Sbjct: 2 TLLGLLAIGVCLRIAISDLYARRVPNTWLLSACVIAVVLIVAGQFSAPRLPWGPHVAGAA 61
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F A MG GDVK + + GW ++ G ++ +++ R+
Sbjct: 62 LGLVALLPFHALRWMGAGDVKFFSVLGLMLGWQALLPIWIAASLAAGAHAAIVLVSRRLG 121
Query: 127 TNHIPIFGMFVPK----------------SFLMKNKIPYGIAISMGGL 158
V + + ++ IPY +++ +
Sbjct: 122 ALLPFGLQAQVDRASSHWQSHPALRDMQSARQGRHGIPYAAYLAISAI 169
>gi|91783008|ref|YP_558214.1| putative prepilin peptidase transmembrane protein, CpaA like
[Burkholderia xenovorans LB400]
gi|91686962|gb|ABE30162.1| Putative prepilin peptidase transmembrane protein, CpaA like
protein [Burkholderia xenovorans LB400]
Length = 166
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 2/153 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M L+ A+SD I N + + L + A + + +G
Sbjct: 1 MNVFVGILLFVAWAAAVAISDCRWRRISNSIVVAGLAAAFGCALFQCGPFGISPARAGIG 60
Query: 66 L-IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
I FF +MG DVK+ W G + ++ G ++++L
Sbjct: 61 ALIGLAALLPFFVLGVMGAADVKIFAVLGAWCGMQ-ALPGLWMAASLAAGAHALWLLITT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
+ K PY +S+
Sbjct: 120 RTRLAELVRRSGATFELAGKASTPYAACLSVAA 152
>gi|325678981|ref|ZP_08158579.1| bacterial peptidase A24, N-terminal domain protein [Ruminococcus
albus 8]
gi|324109485|gb|EGC03703.1| bacterial peptidase A24, N-terminal domain protein [Ruminococcus
albus 8]
Length = 277
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS----FLLTAFLLGMDYELIALHL 62
+++A+ + L+ D + +I V + + FLL + + L
Sbjct: 107 LYAALVSLMTSALIVVFFMDWDTQLINTWVVVFIGVLAIPKFLLCQSAAPLSLSAMILGA 166
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
V I ++ MG GDV L+ + ++ G ++ + + +
Sbjct: 167 FVVSIPLLVIALVSHEKAMGMGDVYLMAAGGLFLGAPNILVAMAIALIVGSVCGVIL 223
>gi|325845118|ref|ZP_08168429.1| bacterial peptidase A24, N-terminal domain protein [Turicibacter
sp. HGF1]
gi|325488860|gb|EGC91258.1| bacterial peptidase A24, N-terminal domain protein [Turicibacter
sp. HGF1]
Length = 241
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGL 66
V L+ +SD++ +I ++V + L +D + +VG
Sbjct: 100 HIFVAWAFLSMLIIITVSDIYYQLILDKVLLFWGAIIVFLYVLYPQLDLMSALVSAVVGF 159
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ ++ F +GGGD+KL G P+FLS I + +F+
Sbjct: 160 LTLYVIGLLGQLLFKKEALGGGDIKLYAVVGFVLGIAPTFLSIFIASVIALSYILLFM 217
>gi|167463704|ref|ZP_02328793.1| hypothetical protein Plarl_14304 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322384403|ref|ZP_08058089.1| hypothetical protein PL1_0935 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321150761|gb|EFX44221.1| hypothetical protein PL1_0935 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 155
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ A L+ A +SD+ ++ IPN ++I L + ++ + + +
Sbjct: 1 MIQEACLLVIIC---TAFVSDIRTSAIPNYITIGGLATGVIFQAAV-YGMTGLFQAITAT 56
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
F++ + F +G GDVKL + W S ++ + G I +L R
Sbjct: 57 ATGFLLLLLLYMFGALGAGDVKLFAAVGAWSSIPFVLSSMMYSLLYAGFIGLGILLWRRE 116
Query: 126 ITNHIPIFGMFVPKSFLMKNK 146
+T M+ ++ L+++K
Sbjct: 117 LTRRFFGLVMWFFRAILLRDK 137
>gi|153949206|ref|YP_001399596.1| type IV prepilin peptidase family protein [Yersinia
pseudotuberculosis IP 31758]
gi|152960701|gb|ABS48162.1| type IV prepilin peptidase family [Yersinia pseudotuberculosis IP
31758]
Length = 132
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
++ L+F SD+ +I N+ I + + ++ + +++ ++
Sbjct: 1 MVLIVSQLLFVCYSDIRHRIISNKFVISIAFNAIILIL-----VTHHTVSIIIPIVALFF 55
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+ F FN+MGGGDVKL+T + S ++ + G ++ V +L R
Sbjct: 56 GYIIFHFNVMGGGDVKLITVLLLALTAEQSLNFIIYTAIMGGVVMLVGLLINR------- 108
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + K IPY IAI+ G L+S
Sbjct: 109 --------ADIQKRGIPYAIAITAGFLLS 129
>gi|119566855|gb|ABL84263.1| TadV [Yersinia ruckeri]
Length = 140
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+++ + + L++A +D+ +I N + + ML + + +F + L+
Sbjct: 2 EIIHLLLLSLLLLQLLWACYTDIRYRIIGNDLIVSMLFTAMAFSFSYRGS-----ISLIF 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI+ I F F F ++GGGDVK++T A ++ + + G ++ + ++ R
Sbjct: 57 PLIILTIGFIIFIFGLIGGGDVKMITVLACTLTPMQTYHFITYTAIMGGVVMIIGLVISR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
S + + +PYG+AI+ G
Sbjct: 117 ---------------SDIKERGVPYGVAIASGF 134
>gi|255659647|ref|ZP_05405056.1| type IV prepilin leader peptidase [Mitsuokella multacida DSM 20544]
gi|260848209|gb|EEX68216.1| type IV prepilin leader peptidase [Mitsuokella multacida DSM 20544]
Length = 182
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 18/161 (11%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L+ A+ D + ++P++ ++ + G L+ A L G + + LL ++F +
Sbjct: 39 LFCVLLLVMAVIDFRTGLLPDKGNLYLAGLGLMMAGLTGEAQDALLGALLGAALLFALRT 98
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+ +G GDVK + +W GW + L+ A+ + V + T R
Sbjct: 99 L--SRGGIGLGDVKYAAAFGIWLGWQGTLLALALSFALGACLALVLLGTGR--------- 147
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
++++ +G +S G +SY F A L
Sbjct: 148 -------LGRRDRLAFGPFLSAGAYLSYISGAAFWSAYEVL 181
>gi|227326300|ref|ZP_03830324.1| hypothetical protein PcarcW_02894 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 183
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 19/168 (11%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--------GMDYELIALHLLVG 65
+ CL++ +DL I N+ +++L +L + + + L
Sbjct: 12 LLMGCLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQAGALDMLALRKMLWALPGA 71
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL--------- 116
V ++ F F +G GDVKL++ +W G + + G +
Sbjct: 72 AAVLVVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIVFVMVTALAGGVLALSLPLLNTV 131
Query: 117 --SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+V + M + IPYG+AI+ G +
Sbjct: 132 PTAVAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVLI 179
>gi|86144321|ref|ZP_01062653.1| putative membrane protein [Vibrio sp. MED222]
gi|85837220|gb|EAQ55332.1| putative membrane protein [Vibrio sp. MED222]
Length = 152
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 16/159 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M +V + L F D + IPN ++ L+ + ++ ++ +
Sbjct: 1 MNIDLLVNIVLISTNFLILSFVCFFDGWHRKIPNNLNK----IALIFSNIVALNNGYLMS 56
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L + ++ F++ F + ++G GDVKLL + + ++ + + G ++
Sbjct: 57 SLPIAILCFVVFFILWYLKVIGAGDVKLLCALIIGIQPNLVTITLICIGFLGGFLVFAMY 116
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ ++ IPYGI I+M
Sbjct: 117 IVGKVRGLP------------SFTKGIPYGIPIAMSCFF 143
>gi|77456867|ref|YP_346372.1| peptidase A24A, prepilin type IV [Pseudomonas fluorescens Pf0-1]
gi|77380870|gb|ABA72383.1| putative membrane protein [Pseudomonas fluorescens Pf0-1]
Length = 156
Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 4/153 (2%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGLIVFI 70
+ L A D I N +++ + L+ + G + A L+
Sbjct: 4 FVLLIWLTLCAAQDARERHIGNGLTLGVGALALVWLLVTGSTWLGADAAQGGWAVLLALA 63
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ + MGGGDVKL+T+ A+ +F+ L + V ++ +
Sbjct: 64 LTLPGYLLGRMGGGDVKLMTALALATDGQHLLGAFIGAA--LCSAMWVLLVPKVWLHASQ 121
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
+ S M K+P+ + +G ++++
Sbjct: 122 GVRERLRYFSPEMSKKLPFAPFVLVGTILTFYW 154
>gi|113953399|ref|YP_730913.1| prepilin peptidase [Synechococcus sp. CC9311]
gi|113880750|gb|ABI45708.1| prepilin peptidase [Synechococcus sp. CC9311]
Length = 277
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 29/168 (17%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL------ 66
++ L+ L D+ +P + + + L L + ++
Sbjct: 114 IVLISVLLPLVLIDIDHLWLPEPLCRMGVLLGLAFTGALYLVIPGPEASAVLLNHLLAAS 173
Query: 67 -------IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ + +G GD KL W G ++ V S+
Sbjct: 174 AGLLALEGLSALAERMLGQPALGLGDAKLAAVAGAWLGLGGVLVALAIAVFSGAIFGSIG 233
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ R + P+G I++G +++ +
Sbjct: 234 RVSGR----------------LGPRQPFPFGPFIALGIWLTWLGGPEW 265
>gi|317057039|ref|YP_004105506.1| Prepilin peptidase [Ruminococcus albus 7]
gi|315449308|gb|ADU22872.1| Prepilin peptidase [Ruminococcus albus 7]
Length = 277
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 23/166 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS----FLLTAFLLGMDYELIALHL 62
+++++ + L+ D + +I V I + ++ + +
Sbjct: 107 LYASIVALMTSALIVVFFMDWDTQLINTWVVIFIGALSIPKYIFCRQECNYTLTKMIVGA 166
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
LV I ++ MG GDV L+ + ++ G ++ L I G + + I
Sbjct: 167 LVISIPLLVISLASHEKAMGMGDVYLMAAAGLFLGTPNVVIAMLI-ALITGSVCGLII-- 223
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
K + +G +++G ++
Sbjct: 224 ----------------KHSNGSSVFAFGPYLAIGIAVAALYGDQIA 253
>gi|56964384|ref|YP_176115.1| late competence protein ComC [Bacillus clausii KSM-K16]
gi|56910627|dbj|BAD65154.1| late competence protein ComC [Bacillus clausii KSM-K16]
Length = 239
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 17/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ V ++ L+ +++D MIPN V + + + + L +
Sbjct: 97 LELVVSILLIAMLLLVSMTDYSRMMIPNMVLLFFAIPLVFLRLCV-VPVPFSWLSAISTA 155
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ +I MGGGD+KL A+ G + + + +
Sbjct: 156 MMLLILVAACLNGSMGGGDLKLFVVLAIVLGPKLFLPMVACAACLALLFVGAKTVVGK-- 213
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F IP+ IS L+ Y +
Sbjct: 214 --------------FAPNTAIPFAPFISAAALLVYFAA 237
>gi|327490417|gb|EGF22201.1| bacterial peptidase A24 domain protein [Streptococcus sanguinis
SK1058]
gi|328945090|gb|EGG39245.1| bacterial peptidase A24 domain protein [Streptococcus sanguinis
SK1087]
Length = 246
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + D + I + V +V + F + L LLVG ++ +
Sbjct: 103 CLLVSLCLIIGYIDFDTQYISDSVLLVFWLGRMAVTFFTNEFNWELLLSLLVGAGLYSLI 162
Query: 73 FC----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++ G GD+ L + + WF + + + G IL + +
Sbjct: 163 YFGAKAYYKKEAFGMGDILYLAALSSWFSPLNTLILGYGSFFVAGAILLIATI------- 215
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
F F +K ++P+G A+S+ +I Y
Sbjct: 216 -------FKKFKFKLKEEVPFGPAMSIMAVILYFWG 244
>gi|293375536|ref|ZP_06621810.1| bacterial Peptidase A24 N-terminal domain protein [Turicibacter
sanguinis PC909]
gi|292645753|gb|EFF63789.1| bacterial Peptidase A24 N-terminal domain protein [Turicibacter
sanguinis PC909]
Length = 252
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGL 66
V L+ +SD++ +I ++V + L +D + +VG
Sbjct: 100 HIFVAWAFLSMLIIITVSDIYYQLILDKVLLFWGAIIVFLYVLYPQLDLMSALVSAVVGF 159
Query: 67 IVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ ++ F +GGGD+KL G P+FLS I + +F+
Sbjct: 160 LTLYVIGLLGQLLFKKEALGGGDIKLYAVVGFVLGIAPTFLSIFIASVIALIYILLFM 217
>gi|237751253|ref|ZP_04581733.1| predicted protein [Helicobacter bilis ATCC 43879]
gi|229372619|gb|EEO23010.1| predicted protein [Helicobacter bilis ATCC 43879]
Length = 431
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 7 VFSAVFLIPPFCLV-FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
+F A+ + F L+ ++ D ++ +PN + ++ + ++ Y+L A +L
Sbjct: 77 IFVALCCLMGFVLLHILSVLDFYTQKVPNILLAILFICANILYYVTHEMYDLYAFGVLGI 136
Query: 66 -LIVFIICFCFFAFNIMGGGDVKLLTSTAVWF-GWTPSFLSFLFFVAILGGILSVFILTV 123
V+ + MG GDV ++ S AV + +SF+F + + ++ +
Sbjct: 137 VYGVYFMLHLVGNRQYMGEGDVWIIASLAVILESFFAYQISFIFEMLCVASLMGIVYSYF 196
Query: 124 RMITNHI 130
+
Sbjct: 197 NVWRLKR 203
>gi|260431092|ref|ZP_05785063.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414920|gb|EEX08179.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 181
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 49/171 (28%), Gaps = 20/171 (11%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL------------- 57
+ A +D+ I N + + F++ + +
Sbjct: 11 FLPFVLPICFYVAFTDMREMRIKNHAVVALACVFVIVGLIALPPWSGDWIPGAIGPFGFA 70
Query: 58 ---IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
A L ++V + A +MG GD K + A +AIL
Sbjct: 71 LPVYAWQLFHLVVVLLFGILLNAAGVMGAGDAKFCAAAA----PFVWLGDLYLVLAILMA 126
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
T R+ + +S+ + P G+A++ G I
Sbjct: 127 ATLGAFATHRLAKHSRLRQFAPTWESWDRGKQFPMGLALAGGLAIYLILGA 177
>gi|241667108|ref|YP_002985192.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862565|gb|ACS60230.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 187
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
C + AA+ D IPN V+ L + A + G I L +I FA
Sbjct: 20 CTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSG-GLAGIGLAFAGLFAAGLIFIIAFA 78
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
GGGDVKL+ + G P+ ++GG+++VF + R+ + +
Sbjct: 79 AGSCGGGDVKLMAALGAILGLWPAI-DVTLASLMVGGVIAVFSMARRVQWSVLARTVGLF 137
Query: 138 PKSFLMK 144
Sbjct: 138 ALLLPAG 144
>gi|87299151|emb|CAJ76213.1| competence transcription factor C [Bacillus sp. Ob 12b]
Length = 186
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 35/108 (32%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP + I L + + + ++ + + + C +GG
Sbjct: 79 VTDYLYMLIPACILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
GD+KLL+ G F+ + I R+
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRIEVRKPL 186
>gi|294792014|ref|ZP_06757162.1| putative pre-pilin leader peptidase [Veillonella sp. 6_1_27]
gi|294457244|gb|EFG25606.1| putative pre-pilin leader peptidase [Veillonella sp. 6_1_27]
Length = 180
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 22/168 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
A++ + ++ A D+ ++P+ ++ ++ ++ +++ + L ++ +
Sbjct: 31 THIALYAVFSLIIIAGATIDMHYYILPDEGALALVIGGIIYSYINDQSMLVTLLS-VISV 89
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ G GD+K ++ A+W F + L +
Sbjct: 90 GTITYGLRLISHKGFGIGDIKWFSAIAIWLTPWEIICFFYVTFCVGSLYLLL-------- 141
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G + GG + +V L
Sbjct: 142 -------------TGYRNRYIPFGPFLCFGGWCALHGGSYMEVLYQWL 176
>gi|20094140|ref|NP_613987.1| prepilin-cleaving (type IV) signal peptidase [Methanopyrus kandleri
AV19]
gi|19887147|gb|AAM01917.1| Prepilin-cleaving (type IV) signal peptidase [Methanopyrus kandleri
AV19]
Length = 324
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 12/172 (6%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
FL AA++DL ++PNR++ + + + A + +D + LL + F +
Sbjct: 5 FLAGLAVATVAAITDLKWGIVPNRLTYPAIVAGAIYAAV--IDPSHLGYALLDAGVAFGV 62
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWF--------GWTPSFLSFLFFVAILGGILSVFILTV 123
++GGGDVKLL S ++ G F S L + L+V
Sbjct: 63 TLVLNVLGVLGGGDVKLLPSLTLFLHRGDRITTGIDVLFNSILLYAPFALLYLTVSTALD 122
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
R ++ + I G+A +G +IS L +A+ ++
Sbjct: 123 R--GRPFLKELCLNTTILVLASLIAGGVATILGTVISSVVGILLILAVWKVA 172
>gi|254487780|ref|ZP_05100985.1| prepilin peptidase [Roseobacter sp. GAI101]
gi|214044649|gb|EEB85287.1| prepilin peptidase [Roseobacter sp. GAI101]
Length = 163
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 25/150 (16%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIICF 73
L++ +++D S +P+ ++ ++ LL A + + G VF
Sbjct: 24 LVAVLIWLSVTDWQSFRLPDAGTLPLIMCGLLLAVWRDGSVPVDQVIGTVAGFAVFWAIG 83
Query: 74 CFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ + +G GD KLL + W GW + S + +I G +++
Sbjct: 84 AAYFRARGIDALGLGDSKLLAAAGAWMGWQ-ALPSMILISSITGIAVALV---------- 132
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ IP+G ++++ +
Sbjct: 133 ---------RGGDSSANIPFGPSLALAFFL 153
>gi|330811040|ref|YP_004355502.1| membrane protein [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327379148|gb|AEA70498.1| Hypothetical protein; putative membrane protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 176
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 11/143 (7%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
SDL IPN + ++ L L + + LL LI F + +A M G
Sbjct: 22 SDLLRHRIPNTLVLLGLALGLASQIYTD-GIGGLGDSLLGMLICFALFLPMYAVGGMAAG 80
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL-- 142
DVKL+T + + + + LF I GG+ I+ R ++
Sbjct: 81 DVKLMTMVGSFLPFHYALWAALF-SLIAGGVCGFLIVLARGQLLQTLQRYWLSVRAQAYL 139
Query: 143 -------MKNKIPYGIAISMGGL 158
PY IAI +G L
Sbjct: 140 APGSDEVAGKPFPYSIAILIGTL 162
>gi|254432145|ref|ZP_05045848.1| type II secretion protein [Cyanobium sp. PCC 7001]
gi|197626598|gb|EDY39157.1| type II secretion protein [Cyanobium sp. PCC 7001]
Length = 293
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 50/166 (30%), Gaps = 29/166 (17%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------------DYELIA 59
+ L+ L DL +P + + L L LLG
Sbjct: 128 WLLLSWLIPLTLIDLDRLWLPESLCRIGLILGLACTALLGFAQGLEVGRALLFHHLVAAG 187
Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ LL V + +G GD KL W G T L+ + VA + V
Sbjct: 188 VGLLGFEAVSALAERLIGKPALGLGDAKLAALLGAWLGLTGLGLTVVIAVASGAAVGVVG 247
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
L+ R + +P+G ++ GG + +
Sbjct: 248 RLSGR----------------LGRHDPMPFGPFLAAGGAGVWLLGH 277
>gi|126461323|ref|YP_001042437.1| peptidase A24A, prepilin type IV [Rhodobacter sphaeroides ATCC
17029]
gi|126102987|gb|ABN75665.1| peptidase A24A, prepilin type IV [Rhodobacter sphaeroides ATCC
17029]
Length = 167
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 6/160 (3%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + ++ A SD+ IPN+ + + FL+ ++ + + L L+
Sbjct: 12 AAVFLPLVLPIALWVAWSDMKFMKIPNKAVLALAAVFLVAGPVV-LPLDDWLWRWLHLLV 70
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
V + F ++G GD K + A + + +A+ L + R +
Sbjct: 71 VLVAGFLMNMGRLIGAGDAKFAAAMAPFV----ALEDLRLALALFAASLLGAFASHRGLG 126
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
P + P G+A++ G LI Y + LF
Sbjct: 127 LLEPFRRATADWESWRRRDFPMGLALA-GMLILYLLAALF 165
>gi|269127164|ref|YP_003300534.1| peptidase A24A prepilin type IV [Thermomonospora curvata DSM 43183]
gi|268312122|gb|ACY98496.1| peptidase A24A prepilin type IV [Thermomonospora curvata DSM 43183]
Length = 260
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 19/159 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
A F A+ D + +P+ +++ + L LI
Sbjct: 105 ELAAFAWFGTAATALAIIDAETKRLPDPLTLPSYPVGIALLGAAAPFTADGGARYLQALI 164
Query: 68 VFIICFCFFAFNIM------GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ +A G GDVKL + GW + A+ G ++ +
Sbjct: 165 CMGALWLLYAAQWFLLPGRLGFGDVKLAGICGLHLGWLG--PGAVIVGAMAGHVIFLPYA 222
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + ++PYG + G L++
Sbjct: 223 L-----------ALLATGGAGRRTQLPYGPFMIAGALLA 250
>gi|289192798|ref|YP_003458739.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22]
gi|288939248|gb|ADC70003.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22]
Length = 339
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S V++I L+ A+++D+ +IP++ +I M+ L+ + ++
Sbjct: 3 LLSVVYIINFILLILASITDIKERIIPHKYTIAMIIMNLVVGYYYFG-----FNAIIAFF 57
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
I+C MGGGDVKL T+ A F + SF+ ++
Sbjct: 58 STLILCLILSV--GMGGGDVKLFTALAPIFAYPNSFVFYI 95
>gi|108803995|ref|YP_643932.1| peptidase A24A-like protein [Rubrobacter xylanophilus DSM 9941]
gi|108765238|gb|ABG04120.1| peptidase A24A-like protein [Rubrobacter xylanophilus DSM 9941]
Length = 250
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 47/141 (33%), Gaps = 17/141 (12%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+DL ++PN V + + L+ + +G+ ++ MG G
Sbjct: 116 TDLEHRLLPNAVVLPAAAAGLILSAAADPARWWAYPLSALGVAGGLLALALARPGGMGMG 175
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
DVK+ + G + + + + + G+ +
Sbjct: 176 DVKMGGMLGAFLGP-----------------YAFLAVFLGALGGALVGGGLMALGRAGRE 218
Query: 145 NKIPYGIAISMGGLISYPDSY 165
+++P+G +++GG +
Sbjct: 219 SRLPFGTFMALGGAAALFFGP 239
>gi|57233881|ref|YP_182073.1| type IV prepilin leader peptidase family protein [Dehalococcoides
ethenogenes 195]
gi|57224329|gb|AAW39386.1| type IV prepilin leader peptidase family protein [Dehalococcoides
ethenogenes 195]
Length = 255
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 21/173 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA---FLLGMDYELIALHLLV 64
A+ L+ + + DL +I N + + L + ++
Sbjct: 99 ELAISLVYLCVFITLFVIDLEKGLILNVIIYPCMLLALALSPLYLQADGILANLSSSFFG 158
Query: 65 GLIVFIICFCFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
GL F + + + +G GD+K+ + G+ F++ + + G + +L+
Sbjct: 159 GLSGFGLFLLIYIASRGGIGEGDIKMAGFIGLVCGFPNIFVAIFTGIVLGGLAAAALMLS 218
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ +P+G +++G + + +GL+
Sbjct: 219 GKRRK----------------GQTMPFGPFLAVGAVTAMLFGSQIMDWYLGLA 255
>gi|168335415|ref|ZP_02693506.1| hypothetical protein Epulo_10182 [Epulopiscium sp. 'N.t. morphotype
B']
Length = 137
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L+ ++SD + +IP + + ++ ++ + + + +L+ + +
Sbjct: 4 VLMCVYLICISISDAATKIIPPKFTAAIMCLGIINTAMNANNIVEHIVGMLIIPSILFLI 63
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F MGGGD+KL+T ++ G + ++F I +V +
Sbjct: 64 IVFTKEQAMGGGDLKLMTGAGLYLGSSKIMIAFSTACYIALFWYAVKSIAG--------- 114
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + +G +++G +++
Sbjct: 115 ---------NPEREFAFGPYLAIGIVVA 133
>gi|157362877|ref|YP_001469644.1| peptidase A24A domain-containing protein [Thermotoga lettingae TMO]
gi|157313481|gb|ABV32580.1| peptidase A24A domain protein [Thermotoga lettingae TMO]
Length = 240
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 19/158 (12%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
S + I ++ +L DL +IP+ +++ + + G + + +
Sbjct: 94 SNFLEFIALSIILSSVIVLSLIDLQFMLIPDITLLLIGAGSFVLWIVRGAELLNLV--AV 151
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ V +I MG GD+ L+ + ++ G T S S +F + G I ++
Sbjct: 152 GLVTVLLIVLSLLYKGGMGSGDILLMAAMSLSLGITGSLYSLVFAS-LSGIIYALI---- 206
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ K +IP+G ++ G I
Sbjct: 207 ------------RDKGKLIAKKRIPFGTFLAPTGYIIL 232
>gi|332162952|ref|YP_004299529.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|318604225|emb|CBY25723.1| type IV prepilin peptidase TadV/CpaA [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667182|gb|ADZ43826.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862297|emb|CBX72458.1| hypothetical protein YEW_HH31900 [Yersinia enterocolitica W22703]
Length = 128
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
L+F SD+ I N+ I + + + F + A+++++ +I + F F
Sbjct: 4 LLFVCYSDIRYRTISNKFIITIAINAVALGFTMN-----HAINIVIPFSALLIGYSLFHF 58
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+++GGGDVKL+T + S L+ + G ++ + +L R
Sbjct: 59 HLIGGGDVKLITVLLLALTTAKSLDFILYTAMMGGVVMIIGMLVNR-------------- 104
Query: 139 KSFLMKNKIPYGIAISMGGLISYP 162
+ + +PY +AIS G L+S+
Sbjct: 105 -EDIQQRGVPYAVAISAGFLLSFL 127
>gi|116052329|ref|YP_792640.1| hypothetical protein PA14_55800 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893387|ref|YP_002442256.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa LESB58]
gi|254239035|ref|ZP_04932358.1| hypothetical protein PACG_05212 [Pseudomonas aeruginosa C3719]
gi|254244894|ref|ZP_04938216.1| hypothetical protein PA2G_05767 [Pseudomonas aeruginosa 2192]
gi|296390994|ref|ZP_06880469.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa PAb1]
gi|115587550|gb|ABJ13565.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170966|gb|EAZ56477.1| hypothetical protein PACG_05212 [Pseudomonas aeruginosa C3719]
gi|126198272|gb|EAZ62335.1| hypothetical protein PA2G_05767 [Pseudomonas aeruginosa 2192]
gi|218773615|emb|CAW29429.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa LESB58]
Length = 160
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 2/149 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L D+ + N + + + ++ +++ + + +C
Sbjct: 4 LALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVC 63
Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ +G DVK L + + S F + + + L R +
Sbjct: 64 LSLPGYLLGRLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSA 123
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + ++ P+ A+S G L
Sbjct: 124 MNEEVRLRRAPSKNKSFPFIFAMSAGLLA 152
>gi|288560490|ref|YP_003423976.1| type IV leader peptidase family protein [Methanobrevibacter
ruminantium M1]
gi|288543200|gb|ADC47084.1| type IV leader peptidase family protein [Methanobrevibacter
ruminantium M1]
Length = 302
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL---IALHLLVGLIV 68
F++ F L+ A DL +IPN++S+ ++ +L L+ + ++ +I+
Sbjct: 22 FIMVFFTLLLANYYDLKYGIIPNKLSVFLMTFGILINVLILIVLNNRLYAIFYVSYLIII 81
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
FII F + + GGGD+KL S + F +
Sbjct: 82 FIISFVLWKISFWGGGDLKLFCSIGFSLPFIDILNHFYTGSIL 124
>gi|82703479|ref|YP_413045.1| peptidase A24A, prepilin type IV [Nitrosospira multiformis ATCC
25196]
gi|82411544|gb|ABB75653.1| Peptidase A24A, prepilin type IV [Nitrosospira multiformis ATCC
25196]
Length = 194
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 33/176 (18%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVGLIVFIICFCFFAFNIM 81
SD+ S IPN + +L LL + L + + M
Sbjct: 18 WSDIRSRRIPNSLVFPGAIIGVLLHALLPQEAGGLGVLGSLAGLGTGLALLLPLYLLRAM 77
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFL--------------------------FFVAILGGI 115
G GDVKL+ + G + + + V +LG +
Sbjct: 78 GAGDVKLMAMVGAFLGAQETVGALVCVLLAGGVLALAAALLEGKLHLLWRNLNVMLLGAL 137
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLM-----KNKIPYGIAISMGGLISYPDSYL 166
++ + G +S +PYG+AI+ G +
Sbjct: 138 AGATMMGLPASGKPGEAVGGAAAESDTKSAAESTGTLPYGVAIAAGTMAYLAIVRW 193
>gi|152996337|ref|YP_001341172.1| peptidase A24A domain-containing protein [Marinomonas sp. MWYL1]
gi|150837261|gb|ABR71237.1| peptidase A24A domain protein [Marinomonas sp. MWYL1]
Length = 261
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 25/162 (15%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
S + A+ + L+ A + DL +IP+ SI+ L LL E L ++
Sbjct: 119 SDIYQLALHTLLISALLTATVIDLEYQLIPDECSIIALACALLINL-SNNTLETSVLGMI 177
Query: 64 VGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
VG + F+ +G GD K++ W L ++ G + +V
Sbjct: 178 VGYGLIYTLRWFYLTFKGQEGIGLGDAKIIAVLGAWL-GLLGLPPLLLCASLSGILYTVL 236
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + +G + ++ +
Sbjct: 237 -------------------TNRSGAKYMAFGPFLIFSAMLVF 259
>gi|238762405|ref|ZP_04623376.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC
33638]
gi|238699390|gb|EEP92136.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC
33638]
Length = 127
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
L+F SD+ I N I + + ++ +++ L +I + F F
Sbjct: 3 LLFVCYSDIRHRTISNNFIITIAINTVVLGLATHQAVN-----IIIPLSALLIGYIIFYF 57
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+++GGGDVKL+T T S L+ + G ++ + + R
Sbjct: 58 DLIGGGDVKLITVLLFALTTTQSLNFILYTAIMGGVVMIIGMFVNR-------------- 103
Query: 139 KSFLMKNKIPYGIAISMGGLISY 161
+ + +PY +AIS G L+S+
Sbjct: 104 -EDIKQRGVPYAVAISAGFLLSF 125
>gi|239929622|ref|ZP_04686575.1| type IV peptidase [Streptomyces ghanaensis ATCC 14672]
Length = 199
Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 22/159 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-----LHL 62
AV+L+ V A+ D +P+ +++ G+ L+ + + L
Sbjct: 47 ELAVWLLLAPVGVLLAVVDFRVQRLPDPLTLPFAGAALVLLGPVALTPGHAGEWTTALLG 106
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ L + MG GDVKL GW L F + G + +
Sbjct: 107 ALALGAGYLGLFLLNPAGMGFGDVKLALGAGAVLGWYGWPTVMLGTFAGFLFGALYGGAL 166
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ R + IP+G + G L
Sbjct: 167 VVARRAG---------------RRTTIPFGPFLIAGALA 190
>gi|188586929|ref|YP_001918474.1| peptidase A24A prepilin type IV [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351616|gb|ACB85886.1| peptidase A24A prepilin type IV [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 145
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 18/149 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
LI + A D+ IPN++++ + L + L+G + L ++ +
Sbjct: 12 LILIVVMALALYFDIKEFRIPNKITLSAIVIGL-CSGLIGNGVSGLYTSFLGAIVGLALL 70
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F MG GDVKLLT+ G + I G I + L ++
Sbjct: 71 LIPFFLGGMGAGDVKLLTAIGAIKGVEFVLYTAAAMAIIGGLIALYYYLILKQRKMF--- 127
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
PYGIAI G L+S
Sbjct: 128 --------------FPYGIAIVFGALVSL 142
>gi|125973850|ref|YP_001037760.1| peptidase A24A, prepilin type IV [Clostridium thermocellum ATCC
27405]
gi|256004303|ref|ZP_05429285.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 2360]
gi|281418011|ref|ZP_06249031.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20]
gi|125714075|gb|ABN52567.1| peptidase A24A, prepilin type IV [Clostridium thermocellum ATCC
27405]
gi|255991737|gb|EEU01837.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 2360]
gi|281409413|gb|EFB39671.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20]
gi|316939953|gb|ADU73987.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 1313]
Length = 209
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + L ++L D ++ N++ + L+ A L + I +L
Sbjct: 67 LEMIRYAVLYILLASSSLKDYKERIVSNKLVAAGIVLGLVMAALDAEPEKFIQSVILFIA 126
Query: 67 IVFIICFCFFA-FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
I I+ FA +G GD KL+ + ++ G T +S LF+ IL GI + +L ++
Sbjct: 127 IALIMSLISFATKGGVGMGDTKLIAVSGLYTGLTG-IISVLFYSFILSGITGIVLLILKK 185
Query: 126 ITNHIPIFGMFV 137
+ I +
Sbjct: 186 ANSKSRIPFIPF 197
>gi|194017199|ref|ZP_03055811.1| putative A24 family unassigned peptidase [Bacillus pumilus ATCC
7061]
gi|194011067|gb|EDW20637.1| putative A24 family unassigned peptidase [Bacillus pumilus ATCC
7061]
Length = 239
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 20/160 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
S +I V A +SDL +PN + + F++ L + L+ I
Sbjct: 96 ESLFLVILCSLFVIAVVSDLLYMRVPNELFLFFFPLFVIYRTLEPLLIWWEGAASLIFCI 155
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ +F N +GG D+KL + A FG+ P L LF I G + +
Sbjct: 156 LLFSSLDYFKPNSLGGADMKLFSVLAFCFGFKPFLL-MLFLSCIAGMVYAKVF------- 207
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
SF + P+ +I++ L+ + +
Sbjct: 208 ------------SFRVNEPFPFVPSIAISFLLYLCGAPVL 235
>gi|116255767|ref|YP_771600.1| putative transmembrane pilus assembly protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115260415|emb|CAK03519.1| putative transmembrane pilus assembly protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 187
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 2/143 (1%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ A + C + AA+ D IPN V+ L + A + G I L
Sbjct: 4 TYDLTLMPAAAALAVACTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSG-GLAGIGLA 62
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L +I FA GGGDVKL+ + G P+ + GG+++VF +
Sbjct: 63 FAGLLAAGLIFIIAFAAGSCGGGDVKLMAALGAILGLWPAI-DVTLASLMAGGVIAVFSM 121
Query: 122 TVRMITNHIPIFGMFVPKSFLMK 144
R+ + +
Sbjct: 122 ARRVQWSVLARTVGLFALLLPAG 144
>gi|59711118|ref|YP_203894.1| hypothetical protein VF_0511 [Vibrio fischeri ES114]
gi|59479219|gb|AAW85006.1| hypothetical protein VF_0511 [Vibrio fischeri ES114]
Length = 145
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 16/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + ++A D+ + I N + +++ + F+ G +LL L
Sbjct: 3 IKLLIISVVTIANIYAVFHDIKNRKISNNIVFIIMIIGFFSIFVKGG-----MSYLLSPL 57
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
I+ + F F FNI+ GD+K + ++ L + + G
Sbjct: 58 IILFVGFILFKFNIIAAGDIKYYAAMSLMIEQQYLLLVTCIILCLGGL-----------Q 106
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ +PYG+AIS+G L S
Sbjct: 107 AYCQYSIYKLTGNERWIERGVPYGVAISIGSLFGILAS 144
>gi|311280227|ref|YP_003942458.1| Prepilin peptidase [Enterobacter cloacae SCF1]
gi|308749422|gb|ADO49174.1| Prepilin peptidase [Enterobacter cloacae SCF1]
Length = 263
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF---- 78
+ D ++P+ +++ +L LL G + + G + + + +
Sbjct: 132 VIDARHMLLPDCLTLPLLWCGLLLNLRGGWLSLQDAVVGAAAGYVFLWLLYWGYRLLRGR 191
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSF 102
+G GD+KL+ + W GW
Sbjct: 192 EGIGQGDLKLVAAFGAWLGWQVLP 215
>gi|261820212|ref|YP_003258318.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163]
gi|261604225|gb|ACX86711.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163]
Length = 183
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 19/168 (11%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--------DYELIALHLLVG 65
+ CL++ +DL I N+ +++L +L + L + + L
Sbjct: 12 LLIGCLLWCISTDLLVRKITNQAVLILLLGWLFFSALYVLQSGALDMVALRKMLWALPGA 71
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL--------- 116
V ++ F F +G GDVKL++ +W G + + G +
Sbjct: 72 AAVLVVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIVFIMVTALAGGVLALSLPLLNTV 131
Query: 117 --SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+V + M + IPYG+AI+ G +
Sbjct: 132 PTAVALGVQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAIYVLI 179
>gi|312880686|ref|ZP_07740486.1| peptidase A24A domain protein [Aminomonas paucivorans DSM 12260]
gi|310783977|gb|EFQ24375.1| peptidase A24A domain protein [Aminomonas paucivorans DSM 12260]
Length = 264
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 16/152 (10%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L +F AL+DL I + +V L L G+ L + +
Sbjct: 113 LSLSALALFHALTDLECGYIYDLPVVVTLALGLALRLPGGVPALLDGVAGAAAGWGVLAA 172
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ MG GD L+ + GW + L+ L+ +GG+ +V +L
Sbjct: 173 VILASRGGMGWGDALLMLGFGAFLGWKAALLA-LYGGFAVGGVWAVTLLLRGKAK----- 226
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
K+ IP G +++G + +
Sbjct: 227 ----------RKDPIPLGPFLALGAVGALLLG 248
>gi|218288168|ref|ZP_03492467.1| peptidase A24A domain protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218241527|gb|EED08700.1| peptidase A24A domain protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 261
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 1/123 (0%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
AV+ L A DL S ++PN +++ F L + L G+ L+A V
Sbjct: 107 LAVWWAFWLYLASAVACDLTSLILPNVLTLPAGVIFFLGSGLTGIRTWLMAAAGAAVGYV 166
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ F MG GD KL G ++F+ AI G I ++ + +
Sbjct: 167 IVAAIHFVTGGKMGMGDAKLNLGIGAMLGPGYMVMAFVL-AAIYGVIAALPLRIAGRVKP 225
Query: 129 HIP 131
P
Sbjct: 226 QQP 228
>gi|297581606|ref|ZP_06943528.1| predicted protein [Vibrio cholerae RC385]
gi|297534013|gb|EFH72852.1| predicted protein [Vibrio cholerae RC385]
Length = 138
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 16/151 (10%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ LV+ ALSDL +PN I ++ ++ + + + + ++V +
Sbjct: 3 IVTVLLLVWVALSDLQQRKVPN---IAVILFAVVVGAVTPLSQGNVLIS----VVVLSLG 55
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F F + G GD KLL A +G + S +F A+ GG+LSV
Sbjct: 56 MLAFHFRLFGAGDSKLLAVCA--YGAGDQWTSLIFITALFGGVLSVMCWIHNWGVQTGFS 113
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
V +PY +AI +
Sbjct: 114 SKPPV-------KTVPYAVAICGAAFATLHY 137
>gi|15599491|ref|NP_252985.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa PAO1]
gi|9950516|gb|AAG07683.1|AE004845_9 Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa PAO1]
Length = 160
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 2/149 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L D+ + N + + + ++ +++ + + +C
Sbjct: 4 LALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVC 63
Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ +G DVK L + + S F + + + L R +
Sbjct: 64 LSLPGYLLGRLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSA 123
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + ++ P+ A+ G L
Sbjct: 124 MNEEVRLRRAPSKNKSFPFIFAMGAGLLA 152
>gi|190574776|ref|YP_001972621.1| putative transmembrane peptidase [Stenotrophomonas maltophilia
K279a]
gi|190012698|emb|CAQ46326.1| putative transmembrane peptidase [Stenotrophomonas maltophilia
K279a]
Length = 182
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 18/170 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLV 64
+ + + L+ + A+SDL++ +PN + + + H
Sbjct: 1 MMTLLGLLAIGVCLRIAISDLYARRVPNAWLLSASIIAIALIIAGQFSTPRQPWPAHAAG 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ + F+A MG GDVK + GW ++ G +V I+ R
Sbjct: 61 AALGLVALLPFYAIRWMGAGDVKFFAVLGLMLGWKALLPIWMVASLAAGLHAAVIIVGRR 120
Query: 125 MITNHIPIFGMFVPKSFLM----------------KNKIPYGIAISMGGL 158
+ M V ++ ++ IPY +++ G+
Sbjct: 121 LGVMLPTGLQMQVNRASSQWQSHPALRDMQAARQGRHGIPYAAYLAITGI 170
>gi|300786328|ref|YP_003766619.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Amycolatopsis mediterranei U32]
gi|299795842|gb|ADJ46217.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Amycolatopsis mediterranei U32]
Length = 259
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 22/150 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT----AFLLGMDYELIALHLLVGL 66
FL + AL DL +PN + + L+ A+ G + +
Sbjct: 100 AFLYFGAIGIALALIDLDCRRLPNAIVLPSYPVLLVLLTASAWWRGDWWSPARAGIGGAA 159
Query: 67 I-VFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTV 123
+ F + MG GDV+L + P+ L F +LG + V +L
Sbjct: 160 LFGFYLLLALAYPAGMGFGDVRLAGILGGILAYLSWPALLVGAFGGFLLGAVAGVVVLAT 219
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
K +P+G +
Sbjct: 220 GKGG---------------RKTALPFGPFM 234
>gi|332560329|ref|ZP_08414651.1| Peptidase A24A, prepilin type IV [Rhodobacter sphaeroides WS8N]
gi|332278041|gb|EGJ23356.1| Peptidase A24A, prepilin type IV [Rhodobacter sphaeroides WS8N]
Length = 167
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 6/160 (3%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + ++ A SD+ IPN+ + + FL+ ++ + + L L+
Sbjct: 12 AAVFLPLVLPIALWVAWSDMKFMKIPNKAVLALAAVFLVAGPVV-LPLDDWLWRWLHLLV 70
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
V + F ++G GD K + A + +A+ L + R +
Sbjct: 71 VLAVGFLMNMGRLIGAGDAKFAAAMA----PFVALEDLRLALALFAASLLGAFASHRGLG 126
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
P + P G+A++ G LI Y + LF
Sbjct: 127 LLGPFRRATADWESWRRRDFPMGLALA-GMLILYLLAALF 165
>gi|225174911|ref|ZP_03728908.1| peptidase A24A domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225169551|gb|EEG78348.1| peptidase A24A domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 247
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + L+ D+ +IPNR+ +++LG LL + AL +
Sbjct: 94 EFVIHAVFFAILLVIFFIDIDHQIIPNRLVLLLLGYSLLIQVVWPQVAWSDALLGGLLGG 153
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + MGGGD+KL+ +W+GW L +
Sbjct: 154 GLFLFLAVVSGGGMGGGDIKLVAVLGLWYGWAQLLLLMFLA----------------FLG 197
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ + + K+ IP+G + + + + +S
Sbjct: 198 GGLIGGILLILGIKKRKDGIPFGPFLVLAAFVVTMWGRQLLEWYLRIS 245
>gi|330941598|gb|EGH44381.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 98
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
VF + MG GD KLL W GW L+ L +++G +L V ++ VR +
Sbjct: 4 VFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMRVRRV- 61
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
IP+G +++ G I+
Sbjct: 62 --------------ESGTPIPFGPYLAIAGWIALLWG 84
>gi|170760556|ref|YP_001786704.1| type IV leader peptidase family protein [Clostridium botulinum A3
str. Loch Maree]
gi|169407545|gb|ACA55956.1| type IV leader peptidase family protein [Clostridium botulinum A3
str. Loch Maree]
Length = 248
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIM 81
DL + + ++++I + ++ + + V L I F M
Sbjct: 111 FIDLDTTDVYSKITISAMIIGVIYILIEKFYFGYGIKTYMYAVLLCATAIGTIIFTTKGM 170
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD+ + +++ G + ++ LFF I G ++ +F++ +
Sbjct: 171 GSGDLDIYIVVSLFLGLKITAMT-LFFSFIFGALIGIFLIISKRK--------------- 214
Query: 142 LMKNKIPYGIAISMGGLISYPDSY 165
K+ +P+G I+M + S
Sbjct: 215 TKKDYMPFGPFIAMASIFSILFGD 238
>gi|29831367|ref|NP_826001.1| type IV peptidase [Streptomyces avermitilis MA-4680]
gi|29608482|dbj|BAC72536.1| putative leader peptidase (prepilin peptidase) /
N-methyltransferase [Streptomyces avermitilis MA-4680]
Length = 247
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 18/149 (12%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL-----LVGLIVFIICFCFFA 77
+ D +P+ +++ + G+ + + E L + L
Sbjct: 110 TIVDFRVQRLPDVLTLPLAGAAAALLGVAALAPEHAGEWLTALLGALALGGAYFVLFLVN 169
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
N MG GDVKL GW G V + + G+
Sbjct: 170 PNGMGFGDVKLALGLGAVLGWY-------------GWSTVVLGTFAGFLFGGLYGLGLVA 216
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ + IP+G + G +
Sbjct: 217 SRRAGRRTSIPFGPFLIAGAFVGLLIGAY 245
>gi|330983449|gb|EGH81552.1| prepilin peptidase [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 247
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 25/169 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + ++ DL ++P+ + +L S LL A + + + +
Sbjct: 97 QQLLLVPMGVLMLLMLRVDLEHFVLPDVLVFTLLWSGLLWAAAFNPEPQKAVIAAFGAYV 156
Query: 68 VFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+MG GD KL + A W + + L + +
Sbjct: 157 ALYALAEGYSALRKIQMMGHGDYKLFAALAAWLDYPMIPMLLLGASVTMIALWLAHY--- 213
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIA--ISMGGLISYPDSYLFKVA 170
+ ++P+G A ++ LI VA
Sbjct: 214 ----------------RRHEQAEMPFGPALILAGAALIITTTQPWLAVA 246
>gi|149175940|ref|ZP_01854557.1| probable type 4 prepilin-like proteins leader peptide processing
enzyme [Planctomyces maris DSM 8797]
gi|148845094|gb|EDL59440.1| probable type 4 prepilin-like proteins leader peptide processing
enzyme [Planctomyces maris DSM 8797]
Length = 425
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 53/192 (27%), Gaps = 68/192 (35%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-------ELIALHL 62
A L+ L+ A D +IP+ ++ + ++ +F G+ Y E + L
Sbjct: 140 AFHLVLIESLMVATFIDFDLKIIPDGATMPAMFIGVIGSFAFGLLYLVPVWFQEPSVVRL 199
Query: 63 LVGLI------------------------------------------VFIICFCFFAFNI 80
L V II
Sbjct: 200 LGIYFPEQYRSAFVVEKVPQWVNLYPHLHGLAVSLVGLVVGGGVVWAVRIIGQWTLRQEA 259
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
MG GDV L+ + GW + F+ G+++V I
Sbjct: 260 MGFGDVILMAVIGSFLGWQATVTVFVISPLCALGVVAVSIF------------------- 300
Query: 141 FLMKNKIPYGIA 152
F +IP+G
Sbjct: 301 FKQSREIPFGPY 312
>gi|218133640|ref|ZP_03462444.1| hypothetical protein BACPEC_01509 [Bacteroides pectinophilus ATCC
43243]
gi|217991015|gb|EEC57021.1| hypothetical protein BACPEC_01509 [Bacteroides pectinophilus ATCC
43243]
Length = 256
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHL---- 62
S + + L+ A+ D + IP +++ + L+ M +
Sbjct: 101 TSILTCLLFTILLAIAVIDWRTYEIPFGLNVTIGVLGLIKTIIDYPMGLWEHIIGFFAVS 160
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ LI + GGGD+KL+ + ++ GW L+FL + I SV +
Sbjct: 161 IFMLICLYAGRLIIGADCFGGGDIKLMAAAGLFLGWKCIILAFLAGCILGAVIHSVRM 218
>gi|21227780|ref|NP_633702.1| hypothetical protein MM_1678 [Methanosarcina mazei Go1]
gi|20906185|gb|AAM31374.1| conserved protein [Methanosarcina mazei Go1]
Length = 258
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIA 59
M+ L L++ +DL + N+V ML S + +
Sbjct: 1 MLDYMIEILKILFTMPFLLYGCYTDLKERRVSNKVWKYMLASGSVFVIYEVFTGGLPYVK 60
Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104
+L +IVFI + F GGGD K L ++ F P FL
Sbjct: 61 SLILSSVIVFISIYILFQLGAFGGGDAKGLIVLSILFPLYPVFLF 105
>gi|269798142|ref|YP_003312042.1| peptidase A24A prepilin type IV [Veillonella parvula DSM 2008]
gi|282850371|ref|ZP_06259750.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Veillonella parvula ATCC 17745]
gi|269094771|gb|ACZ24762.1| peptidase A24A prepilin type IV [Veillonella parvula DSM 2008]
gi|282579864|gb|EFB85268.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Veillonella parvula ATCC 17745]
Length = 180
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 22/168 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
A++ + ++ A D+ ++P+ ++ ++ ++ +++ + L ++ +
Sbjct: 31 THIALYAVFSLIIIAGATIDMHYYILPDEGALALVIGGIMYSYINDKSMLVTVLSVMS-V 89
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ G GD+K ++ A+W F + L +
Sbjct: 90 GAITYGLRLISHKGFGIGDIKWFSAIAMWLSPWEIICFFYVAFCVGSLYLLL-------- 141
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G + GG + +V L
Sbjct: 142 -------------TGYRNRYIPFGPFLCFGGWCALHGGSYMEVLYQWL 176
>gi|89892807|ref|YP_516294.1| hypothetical protein DSY0061 [Desulfitobacterium hafniense Y51]
gi|89332255|dbj|BAE81850.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 150
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 17/154 (11%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
A ++ L+ A++ DL +IP+ + ++++ + L+ + + V +
Sbjct: 6 IAQAVLFFCLLLVASVWDLRKRIIPDSICLLIVLTGLIDFSPVRL--------WGVLAAL 57
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ + + +GGGD+KL + + G F+ G L +
Sbjct: 58 PLLIAALYKPDGIGGGDIKLTAAAGIVLG---------FWGCTAGLTLGLMASLFFYFWT 108
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +P +S+G L
Sbjct: 109 QAIRRLRKLEPLKTSQASLPMAPFLSLGFLAVII 142
>gi|238789146|ref|ZP_04632934.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC
33641]
gi|238722678|gb|EEQ14330.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC
33641]
Length = 127
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 20/145 (13%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
L+ SD+ + NR I + + + + +++ L ++ + F F
Sbjct: 3 LLAICYSDILHRTVSNRFIITITLNTIALGLTIHNTVN-----IIIPLCSLLVGYIIFHF 57
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
N +GGGDVKL+T+ S ++ + G ++++ +L
Sbjct: 58 NFIGGGDVKLITALLFSLNLQESLDFIIYTAIMGGVVMTIGMLI---------------N 102
Query: 139 KSFLMKNKIPYGIAISMGGLISYPD 163
+ + K +PY +AIS G L+S
Sbjct: 103 QVDIKKRGVPYAVAISGGFLLSLFS 127
>gi|283797121|ref|ZP_06346274.1| late competence protein ComC [Clostridium sp. M62/1]
gi|291075538|gb|EFE12902.1| late competence protein ComC [Clostridium sp. M62/1]
Length = 150
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 19/149 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L ++ D+ IP+ + + LL +L + +
Sbjct: 12 ILFFLLLSAVSVWDIRCRRIPDFLQAGIAALALLDFS------PDHLAGILCMIPYLAVA 65
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+GGGDVKL ST + G + + + ++ + L R
Sbjct: 66 LFSRKKEGIGGGDVKLAGSTGLVLGLPAALTASVAGLSCFILFGAGLSLWKRAGEKET-- 123
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
++ P G ++ G + +Y
Sbjct: 124 -----------RSPFPVGPFLAAGCMCAY 141
>gi|117928521|ref|YP_873072.1| peptidase A24A domain-containing protein [Acidothermus
cellulolyticus 11B]
gi|117648984|gb|ABK53086.1| peptidase A24A domain protein [Acidothermus cellulolyticus 11B]
Length = 262
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF------LLGMDYELIALH 61
A F V A DL + +P+R+++ L L
Sbjct: 102 EMASFWYLSAVGVALAYIDLDTHRLPDRLTLPSYAVAAALLGVAAVTRHRPERMLLALLG 161
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVF 119
+ V F + MG GDVKL ++ G+ + F+ F +LGG+ +V
Sbjct: 162 MAVMYGFFFLLMVI-KPGGMGFGDVKLSGVLGLYLGYLGLGILFVGAFLAFLLGGLAAVG 220
Query: 120 ILTVRMITNHIPIFGMF 136
L R T H I
Sbjct: 221 ALVRRRATRHSTIAFGP 237
>gi|325662185|ref|ZP_08150800.1| hypothetical protein HMPREF0490_01538 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471437|gb|EGC74658.1| hypothetical protein HMPREF0490_01538 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 149
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 45/151 (29%), Gaps = 21/151 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNR-----VSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+I L A++D I N+ ++ F + +
Sbjct: 7 MIITGMLTKIAVTDWKEQKIFNQDVTILFCYCLMQLFFCLNQGEWGRLLFYVISGVCSAS 66
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
++ + GGGD+KL+ + G S S + + G + + + ++
Sbjct: 67 GVLVLITILSPGAFGGGDIKLMAAVGSLLGPVKSLYSLTAAIILCGIYILAEMASGKIKR 126
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
N + +G + G L
Sbjct: 127 NSVVA----------------FGPFLCAGIL 141
>gi|56477531|ref|YP_159120.1| Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
gi|56313574|emb|CAI08219.1| hypothetical protein, Flp pilus assembly protein, protease
[Aromatoleum aromaticum EbN1]
Length = 188
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 9/132 (6%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTA---------FLLGMDYELIALHLLVGLIVFIICFC 74
++DL + IPNR+ + L S + F + +++ +
Sbjct: 16 ITDLLTRRIPNRLILAGLVSGFVLHMADLPGAALFATADSIDGVSVAFGGLAVGLAGMLP 75
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+ MG GDVKL+ + G +F + A G + L R
Sbjct: 76 LYFLRAMGAGDVKLMMMVGAFLGPLQTFGVVVLTFAAGGILALGMALWQRSFAQLALNLR 135
Query: 135 MFVPKSFLMKNK 146
+ S +
Sbjct: 136 FMLTTSAVRAAG 147
>gi|223936613|ref|ZP_03628524.1| peptidase A24A domain protein [bacterium Ellin514]
gi|223894777|gb|EEF61227.1| peptidase A24A domain protein [bacterium Ellin514]
Length = 372
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GDVK + + + GW S + +ILG I+ V ++ +
Sbjct: 289 REAMGLGDVKFMAAIGAFLGWQAVIFSLVV-SSILGSIVGVSLIAFKKQAWS-------- 339
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+++PYG I++ I F
Sbjct: 340 -------SRLPYGPYIALAAAIWLFGGMHFV 363
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG------MDYELIAL 60
+ + V+ + L+ A D +IP+ ++I + + +F++ + +
Sbjct: 115 MLALVYCLFLAGLIAATFIDFEHFIIPDEITIGGIAVGIFCSFIVPAMHHTKSIPDSMKQ 174
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKL 88
+ L+ + + + G KL
Sbjct: 175 SFVGALVGGGLIYGILRLGKLAFGRQKL 202
>gi|126735711|ref|ZP_01751456.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2]
gi|126714898|gb|EBA11764.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2]
Length = 152
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + L LV A + ++ + IPN +++V F + ++ D + + +
Sbjct: 1 MNLEMIPLAMGAVLVVAMVLEIKTGRIPNWLTLVPFALFAVLLVMV-EDRTPLYWQMGLA 59
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ FI FA G G VKLL TA++ + +F +FL F+AI G + + +
Sbjct: 60 VGTFIFGLVLFAIGGSGAGAVKLLAGTALFVPFENAFFTFLLFLAIFFGSSIIIVALRK 118
>gi|330955370|gb|EGH55630.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae Cit 7]
Length = 96
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
VF + MG GD KLL W GW L+ L +++G +L V ++ VR +
Sbjct: 2 VFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILL-SSLVGAVLGVIMMRVRRV- 59
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
IP+G +++ G I+ + M +
Sbjct: 60 --------------ESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFA 93
>gi|187926424|ref|YP_001892769.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J]
gi|241665911|ref|YP_002984270.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
gi|187728178|gb|ACD29342.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J]
gi|240867938|gb|ACS65598.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
Length = 183
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 10/162 (6%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLV 64
+ A ++ V A D+ +PN + + + G+ L
Sbjct: 5 IDIAGWVSVAVLAVLAIALDIRLRRVPNWLVAAGVVLSIALIKFGGVQDLAYDWQDFWLG 64
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
G I F + MG GDVK T + GW +L I G ++ +
Sbjct: 65 GAIAFACFLPLYTLGWMGAGDVKFFTVVGLLAGWHGLVAVWLVSSMISGLHALGIVVLRQ 124
Query: 125 MITNHIPI--------FGMFVPKSFLMKNKIPYGIAISMGGL 158
+ + + IPY +++G L
Sbjct: 125 LDASSPSAWIVMRVCPAIARWDIAHAGLRGIPYAAYMAIGLL 166
>gi|49089278|gb|AAT51664.1| PA4295 [synthetic construct]
Length = 161
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 43/149 (28%), Gaps = 2/149 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L D+ + N + + + ++ ++ + + +C
Sbjct: 4 LALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATANMAMTALFIGVC 63
Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ +G DVK L + + S F + + + L R +
Sbjct: 64 LSLPGYLLGRLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSA 123
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + ++ P+ A+ G L
Sbjct: 124 MNEEVRLRRAPSKDKSFPFIFAMGAGLLA 152
>gi|168703132|ref|ZP_02735409.1| hypothetical protein GobsU_26616 [Gemmata obscuriglobus UQM 2246]
Length = 262
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 24/159 (15%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE------LIALHLLVG 65
++ +V AA+ D ++ +PN +++ ++ S + L + +AL +L
Sbjct: 63 LVVICVGMVLAAVIDGWALKVPNWLTMPLVLSGWMLGGLHDLGVPVDAGTGGLALAVLGT 122
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWF------------------GWTPSFLSFLF 107
+ F + A +G GDVK+ W G + F +F F
Sbjct: 123 VFGFALLLPMLAIGGVGAGDVKMQMGFGAWVGAFFGTGGTTAVTGTPLHGMSVVFGAFCF 182
Query: 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNK 146
+ G + IL R + I + +
Sbjct: 183 GAVVGGAFGLIIILIRRQFKQNAGIVREIMSDLHMFGTG 221
>gi|114568943|ref|YP_755623.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10]
gi|114339405|gb|ABI64685.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10]
Length = 160
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 18/154 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+I L + A +D S +P+ ++ ++ + ++ L + +G F+
Sbjct: 9 VILVVSLAWLAWTDARSFRLPDIGTLPLIVAGVVLNTLWLGTPWTSLIGAALGYGSFVAI 68
Query: 73 FCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ + +G GD KL+ + W G L L G + ++ + + +
Sbjct: 69 EIGYRHLRGRDGLGRGDAKLMGAAGAWCGGWLLPLIVLI-----GTLGALVFIALLALLR 123
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
G P+G +++G +
Sbjct: 124 RRLPDGSQPW---------PFGPWLALGFFAGWL 148
>gi|156741688|ref|YP_001431817.1| peptidase A24A prepilin type IV [Roseiflexus castenholzii DSM
13941]
gi|156233016|gb|ABU57799.1| peptidase A24A prepilin type IV [Roseiflexus castenholzii DSM
13941]
Length = 149
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 1/130 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V + L LV+ +++D+ IPNRV L + LL A + + L LV
Sbjct: 4 VMLTLMLAAAAVLVYVSITDIRERCIPNRVMFPALLTALLVALARPERW-SLLLGGLVAG 62
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ ++ + GGGDVKL + GW + + +L R+
Sbjct: 63 VLLVLPTLIYGLEKAGGGDVKLGLFIGLVLGWPAILPALGLAFVSATLFAAGGMLLRRLS 122
Query: 127 TNHIPIFGMF 136
+ FG F
Sbjct: 123 WRSVIAFGPF 132
>gi|24114600|ref|NP_709110.1| putative leader peptidase [Shigella flexneri 2a str. 301]
gi|24053798|gb|AAN44817.1| putative leader peptidase [Shigella flexneri 2a str. 301]
Length = 95
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVF 69
++ D ++P+R + +L S LL +VG F
Sbjct: 7 FLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIVGYGTF 66
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAV 94
+ + + +G GDVK L +
Sbjct: 67 AVIYWGYRILRHKEGLGYGDVKFLAALGA 95
>gi|210608611|ref|ZP_03287928.1| hypothetical protein CLONEX_00107 [Clostridium nexile DSM 1787]
gi|210152966|gb|EEA83972.1| hypothetical protein CLONEX_00107 [Clostridium nexile DSM 1787]
Length = 152
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 16/168 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + + L+ A+ D IPN + ++ +L+ F+ + +
Sbjct: 1 MEKIFLIGVVCVILISIAVVDARKKKIPNILLGILFFCAVLSGFIFPEISWPDRIAGGIL 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ V + + G GDVKL+ + + G + +F F +A+ IL
Sbjct: 61 VSVVFLTVIWIRPGAFGAGDVKLMAISGLMLGVGRNLTAFGFAIALAALYCLPGILRRDR 120
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+++I +G + +G L+S F +
Sbjct: 121 KK----------------ESEIAFGPFLCVGILLSIFLGKAFIRWYIS 152
>gi|239943921|ref|ZP_04695858.1| putative type IV peptidase [Streptomyces roseosporus NRRL 15998]
gi|291447385|ref|ZP_06586775.1| predicted protein [Streptomyces roseosporus NRRL 15998]
gi|291350332|gb|EFE77236.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length = 276
Score = 48.3 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 22/158 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----L 62
+L+ V A+ D +P+ +++ + + +L +
Sbjct: 124 ELVGWLVLAPVAVLLAVVDRRVHRLPDVLTLPLAAAAVLLLGGAALLPGHAGSWTSGLLG 183
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ L F + N MG GDVKL + V GW + FL F + G + +
Sbjct: 184 GLALGGFYLLLFLINPNGMGFGDVKLALALGVALGWYGWTVLFLGGFAGFLFGAAYGLAL 243
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ +R + IP+G ++ G L
Sbjct: 244 VLLRRAG---------------RRTGIPFGPFMAAGAL 266
>gi|28211999|ref|NP_782943.1| type IV prepilin leader peptidase pilD [Clostridium tetani E88]
gi|28204442|gb|AAO36880.1| type IV prepilin leader peptidase pilD [Clostridium tetani E88]
Length = 263
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 18/175 (10%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV--MLGSFLLTAFLLGMDYELIA 59
K + I L+ ++ D + + + ++ L + +++
Sbjct: 104 KYQLSFEFIKYSIFICFLIIVSVIDFKTMYVYFSIILITIFLRIGIFFLEGDKINFIFYN 163
Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
L + IIC N MG GDV+++ ++ G FL F +G I+SV
Sbjct: 164 YFLAGFIPAMIICIIILLTNGMGWGDVEVIFIAGLFLGIKLCFL-LTFLSFFIGAIISVV 222
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
++ ++ K+ + + I++ +I ++ +
Sbjct: 223 LILTKIK---------------SRKDAVAFVPYIALSSIICMFYGENIIHSIFRI 262
>gi|52425836|ref|YP_088973.1| hypothetical protein MS1781 [Mannheimia succiniciproducens MBEL55E]
gi|52307888|gb|AAU38388.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 166
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 20/160 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ + ++LI L++ + +D+ S +I NRV I + + + ++ + +
Sbjct: 22 MLTNQLTIGLYLIAVLQLIYLSWTDIKSRIIGNRVIISLFFTMVALSW-----LKYEQVF 76
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+L G I +CF F +MGGGD KL+ + F ++ + L
Sbjct: 77 VLQGAIGLAVCFILFMLKVMGGGDAKLIAVLMLSIPPAQLISFFFLTAVFGLLLIIIGWL 136
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
R + + +PYG+AIS G L +
Sbjct: 137 FFRQ---------------SIKQKGLPYGVAISSGYLATL 161
>gi|20091920|ref|NP_617995.1| hypothetical protein MA3102 [Methanosarcina acetivorans C2A]
gi|19917119|gb|AAM06475.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 272
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ M+ L L+++ SDL + + N V ML S + L
Sbjct: 14 LNVFFMIEILKILFAMAFLLYSCYSDLKARRVSNGVWKYMLVSGSVFVIYELFTGGTPYL 73
Query: 61 HLLV--GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
L G++VFI + F GGGD K L ++ F P F
Sbjct: 74 KALFLSGVVVFISVYILFHLGAFGGGDAKGLLVLSILFPLYPIF 117
>gi|149186253|ref|ZP_01864567.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21]
gi|148830284|gb|EDL48721.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21]
Length = 237
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
+DL S I N++++ + L + G+D + + + L + F IC FFA MG
Sbjct: 23 FTDLKSRTIGNKLNLAIAAGAPLFWWTTGLDLWPGVGIQLGIAAATFAICTLFFAIRQMG 82
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
GGDVKLLT+ A+WF T L + + V +
Sbjct: 83 GGDVKLLTALALWFPPTNFLGLVLVMAMLGWVLTLVMGIWG 123
>gi|115351453|ref|YP_773292.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
gi|115281441|gb|ABI86958.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
Length = 166
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 2/155 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M I A D+ ++ N + I + L+++ + + + L+G
Sbjct: 1 MAHLLSTSIFFAWAALVAAGDIRFRLVRNSLVICGGTAALVSSLIHANPFGISTGQALIG 60
Query: 66 -LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
L+ + F FA +MG DVK+ W G P L ++ G+ + ++ +
Sbjct: 61 MLVGLVSFFPLFAMRVMGAADVKVFAVLGAWCGL-PILLWLWVIASLAAGVHVLGLMLLT 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + PY + + I
Sbjct: 120 RTPLGALWVRGLPAMALAGRRSTPYAACLVVPAAI 154
>gi|226309729|ref|YP_002769623.1| hypothetical protein BBR47_01420 [Brevibacillus brevis NBRC 100599]
gi|226092677|dbj|BAH41119.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 150
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 12/142 (8%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D IPN + ++ L + + +A +L F++ MG GD
Sbjct: 2 DWRQRRIPNTLVFPVIAVGLWYQWEGEL----LAGAVLGVAGAFLLTVGPVILKGMGMGD 57
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF---ILTVRMITNHIPIFGMFVPKSFL 142
KLL + W W+ + FL + + ++ + +R I + +L
Sbjct: 58 QKLLMAVGAWTSWSVVYSLFLHSIILCLIVMVFYPQNWARLRNNLQIIAAGWTAHRQVWL 117
Query: 143 MKN-----KIPYGIAISMGGLI 159
PY + + ++
Sbjct: 118 PGREKTAFSFPYAVYLLGAFVL 139
>gi|223557956|gb|ACM90963.1| peptidase A24A domain-containing protein [uncultured bacterium
URE12]
Length = 264
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 30/165 (18%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--------------GMD 54
+ L + ++ ++ D + MI + SI+++ L+ + G
Sbjct: 99 LLIALPALYTMIVMSVIDFKTMMISDLFSIILVALGLIGSPWNPCLQPYAYSWAGCIGQS 158
Query: 55 YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
I + ++ + + +G GD+ L+ + GW S + A+LG
Sbjct: 159 GIGIITGAGSIWAIAVLGKLIYKKDAVGEGDIILMGAIGALCGWRGVITSVMM-AALLGT 217
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
I ++ ++ + + +G ++MG I
Sbjct: 218 IYGFTLIFMKKAG---------------RGSAMAFGPFLAMGAAI 247
>gi|134288135|ref|YP_001110299.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
gi|134132785|gb|ABO60411.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
Length = 240
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 22/166 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
V + + + AL DL + ++P+ +++ +G A + + + G
Sbjct: 82 VRALSVAMFCGWITLLALIDLDTQLLPDLLTLPFMGCGFACAIAGVFVPVSAALVGAVTG 141
Query: 66 LIVFIICFCFFAFNI-----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ + +G GD KLL + W GW + L ++
Sbjct: 142 WAILMAAHWAARLRGRSQDAIGQGDAKLLAAVGAWLGWNAVVDTLLVACLTCLLVV---- 197
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
K + +G +++GG++S
Sbjct: 198 ------------PVARWMKVMKAGSVFSFGPYLAVGGIVSILAWPY 231
>gi|83943931|ref|ZP_00956388.1| membrane protein, putative [Sulfitobacter sp. EE-36]
gi|83845178|gb|EAP83058.1| membrane protein, putative [Sulfitobacter sp. EE-36]
Length = 164
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 5/154 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M+ + + +DL I N I + F+L + + ++
Sbjct: 1 MEITSSAALWFLPFALPLCAYTIYTDLAFMRITNVTVIALAAVFVLIGPIA-LPFDSYLW 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
HLL ++ ++ A +MG GD K + + + FF+A+ L
Sbjct: 60 HLLAMVVALVVGIFMNAGGLMGAGDAKFIAAAT----PFIALGDVRFFMALFMATLVAAY 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
+ R S+ K P G+A+
Sbjct: 116 IIHRAAKYSPLRKLAPQWVSWHEAKKFPMGLALG 149
>gi|77462445|ref|YP_351949.1| hypothetical protein RSP_1900 [Rhodobacter sphaeroides 2.4.1]
gi|221638308|ref|YP_002524570.1| peptidase A24A, prepilin type IV [Rhodobacter sphaeroides KD131]
gi|77386863|gb|ABA78048.1| hypothetical protein RSP_1900 [Rhodobacter sphaeroides 2.4.1]
gi|221159089|gb|ACM00069.1| Peptidase A24A, prepilin type IV [Rhodobacter sphaeroides KD131]
Length = 167
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 6/160 (3%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + ++ A SD+ IPN+ + + FL+ + + + L L+
Sbjct: 12 AAVFLPLVLPIALWVAWSDMKFMKIPNKAVLALAAVFLVAGPFV-LPLDDWLWRWLHLLV 70
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
V + F ++G GD K + A++ + +A+ L + R +
Sbjct: 71 VLAVGFLMNMGRLIGAGDAKFAAAMALFV----ALEDLRLALALFAASLLGAFASHRGLG 126
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
P + P G+A++ G LI Y + LF
Sbjct: 127 LLGPFRRATADWESWRRRDFPMGLALA-GMLILYLLAALF 165
>gi|187476845|ref|YP_784869.1| type IV prepilin leader peptidase [Bordetella avium 197N]
gi|115421431|emb|CAJ47936.1| putative type IV prepilin leader peptidase [Bordetella avium 197N]
Length = 223
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 28/147 (19%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFCFFAF----N 79
D + ++P+ ++ +L + LL + +G + + +
Sbjct: 98 IDRRTLLLPDILTQPLLWAGLLVNLDHAFAPLAQAVVGAALGYALPWLAAQGLRLARGSD 157
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MGGGD KL+ + WFG L +
Sbjct: 158 GMGGGDFKLMAALGAWFGAIRLIDIVLLAS-----------------------LSAILWM 194
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
+P+G ++ G+ + L
Sbjct: 195 LTRGHRALPFGPFLAAAGIAALFLPSL 221
>gi|116070981|ref|ZP_01468250.1| putative type 4 prepilin peptidase [Synechococcus sp. BL107]
gi|116066386|gb|EAU72143.1| putative type 4 prepilin peptidase [Synechococcus sp. BL107]
Length = 266
Score = 47.9 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 21/149 (14%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGM-----DYELIALHLLVGLIVFIICFCFFAFNI 80
D +P + + L + G+ L LL + +
Sbjct: 121 DFDHMWLPEPLCRWGVLVGLSISTTAGLAVFVDHLIATVLALLALESLSALAERLAGKPA 180
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
+G GD KL W G L+ V + V +T R
Sbjct: 181 LGLGDAKLAAMGGAWLGLWGIALAMGLAVFAGAVVGGVARITGR---------------- 224
Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ P+G I++G + + +
Sbjct: 225 LAPQQPFPFGPFIALGIWLVWLMGPFWWW 253
>gi|254508836|ref|ZP_05120946.1| leader peptidase PilD [Vibrio parahaemolyticus 16]
gi|219548222|gb|EED25237.1| leader peptidase PilD [Vibrio parahaemolyticus 16]
Length = 186
Score = 47.9 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHL 62
F+ LI F L+ A DL + ++P+ +++ + + + A + + +
Sbjct: 130 FTLALLIFTFVLIAATFIDLDTMLLPDSLTLPLTWAGIALALFQISPISLQDSVIGA 186
>gi|37522002|ref|NP_925379.1| type 4 prepilin peptidase [Gloeobacter violaceus PCC 7421]
gi|35213001|dbj|BAC90374.1| type 4 prepilin peptidase [Gloeobacter violaceus PCC 7421]
Length = 269
Score = 47.9 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 15/149 (10%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-----------AFL 50
+ +V A + L+ +L DL + +P ++ + L+
Sbjct: 97 TSTSLVEVACWGFFVAVLLALSLIDLDTLELPGELTAAGIVGGLVFRTFFPVWASGAWAS 156
Query: 51 LGMDYELIALHLLVGLIVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
LLVG+ +F + MGGGD L VW GW +S
Sbjct: 157 GPPGLVDALYGLLVGIGLFDVISYVGEKAMGKEAMGGGDATLAGLIGVWLGWKLLLVSLA 216
Query: 107 FFVAILGGILSVFILTVRMITNHIPIFGM 135
F + I R+ FG
Sbjct: 217 FGFGLGAVFGLAGIAAGRLKREEPLPFGP 245
>gi|225376654|ref|ZP_03753875.1| hypothetical protein ROSEINA2194_02296 [Roseburia inulinivorans DSM
16841]
gi|225211537|gb|EEG93891.1| hypothetical protein ROSEINA2194_02296 [Roseburia inulinivorans DSM
16841]
Length = 158
Score = 47.9 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 62/169 (36%), Gaps = 23/169 (13%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSF-------LLTAFLLGM 53
+ ++ +A+ LI L A++D+ +IPN++ +++L + L+ G+
Sbjct: 4 LSNLTVIQTAMTLIFFCGLGILAVTDIKRKIIPNKILVLLLLFWTAGVSMLLILQTEFGL 63
Query: 54 DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
+L + + + +G GDVKL+ ++ + + I
Sbjct: 64 TILFESLAGGTIGGIIFLLCYLLSKGQLGAGDVKLVFVMGLYLTGERIIGAVFYGTLICC 123
Query: 114 GILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ ++ + K+ +P + +G +I+Y
Sbjct: 124 VYSVLLLIRKK----------------ITRKDGVPMTPFLYLGTIITYI 156
>gi|83954504|ref|ZP_00963215.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
gi|83840788|gb|EAP79959.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
Length = 164
Score = 47.9 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 5/154 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M+ + + +DL I N I + F+L + + ++
Sbjct: 1 MEITSYAALWFLPFALPLCAYTIYTDLAFMRITNVTVIALAAVFVLIGPIA-LPFDSYLW 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
HLL +I ++ A +MG GD K + + + F +A+ L
Sbjct: 60 HLLAMVIALVVGIFMNAGGLMGAGDAKFIAAAT----PFIALGDVRFVMALFMATLVAAY 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
+ R S+ K P G+A+
Sbjct: 116 IIHRAAKYSPLRKLAPQWVSWHEAKKFPMGLALG 149
>gi|258510325|ref|YP_003183759.1| peptidase A24A domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477051|gb|ACV57370.1| peptidase A24A domain protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 261
Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 41/122 (33%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
AV+ L A DL S ++P+ +++ F L + L G+ L+A V
Sbjct: 107 LAVWWAFWLYLASAVACDLTSLILPDVLTLPAGVIFFLGSGLTGIRTWLMAAAGAAVGYV 166
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ F MG GD KL G ++F+ L R+
Sbjct: 167 IVAAIHFVTGGKMGMGDAKLNLGIGAMLGPGYMVMAFVLAAIYGVLAALPLRLAGRVKPQ 226
Query: 129 HI 130
Sbjct: 227 QP 228
>gi|116623255|ref|YP_825411.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
Ellin6076]
gi|116226417|gb|ABJ85126.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
Ellin6076]
Length = 138
Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 20/139 (14%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
DL +PN ++ + + A G + + + + F++ F MGGGD
Sbjct: 18 DLRRRQVPNWLTAAGVAVGVACAAPGG--WRGLGMAAAGAVAGFLLLVPFHWLGAMGGGD 75
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
VKL+ G L+ +F I G + +L
Sbjct: 76 VKLMAVYGALLGPAGILLAAVFAGVIGGMCAAGTLLLR------------------PRTA 117
Query: 146 KIPYGIAISMGGLISYPDS 164
IPY AI +G +S
Sbjct: 118 AIPYAPAIVLGAWVSLLGG 136
>gi|86147182|ref|ZP_01065498.1| hypothetical protein MED222_18936 [Vibrio sp. MED222]
gi|85835066|gb|EAQ53208.1| hypothetical protein MED222_18936 [Vibrio sp. MED222]
Length = 145
Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 16/148 (10%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ + D+ +IPN V + + + IV +
Sbjct: 8 LIPLATMAAIVSYQDIRYRIIPNGVVVAVALLGVFYICQ-----TEKFEQFYNFFIVLAV 62
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F FN++ GD KLL + ++ L+ + G + + +
Sbjct: 63 GAVLFYFNVIAAGDSKLLAAFSLMVSPNMMLLAVNVILFAGGTLAITQWVLGK------- 115
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLI 159
S +PYG+ I +G L+
Sbjct: 116 ----TTGNSEWTNRGVPYGVPICLGSLL 139
>gi|326405524|ref|YP_004285606.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
gi|325052386|dbj|BAJ82724.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
Length = 167
Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ V + L FA DL IP+ V M + + G ++ + + L V
Sbjct: 1 MDHVVQIAMLVPLAFACWQDLLLRRIPDGVPAAMALAGIFLRLRDG--FQPLGVSLAVAA 58
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++F + F + +GGGDVKL+ + A+ +G + FLF + GGIL++ L +R+
Sbjct: 59 VLFAVLFAVYLRRSIGGGDVKLIVALALGYGP-LALAGFLFATVLAGGILALAYLALRVA 117
Query: 127 TNHI 130
Sbjct: 118 APPP 121
>gi|148262015|ref|YP_001236142.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5]
gi|146403696|gb|ABQ32223.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5]
Length = 167
Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ V + L FA DL IP+ V M + + G ++ + L V
Sbjct: 1 MDHVVQIAMLVPLAFACWQDLLLRRIPDGVPAAMALAGIFLRLRDG--FQPFGVSLAVAA 58
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++F + F + +GGGDVKL+ + A+ +G + FLF + GGIL++ L +R+
Sbjct: 59 VLFAVLFAVYLRRSIGGGDVKLIVALALGYGP-LALAGFLFATVLAGGILALAYLALRVA 117
Query: 127 TNHI 130
Sbjct: 118 APPP 121
>gi|20089408|ref|NP_615483.1| hypothetical protein MA0519 [Methanosarcina acetivorans C2A]
gi|19914306|gb|AAM03963.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 254
Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSF--LLTAFLLGMDYELIALHLL 63
M+ L L++A +DL + + N+V ML S + + + +
Sbjct: 1 MIEILKILFTMPFLLYACYTDLKARRVSNKVWKYMLASGSVFIIYEVFTGGVPCLKALIF 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
G+IVF+ + F GGGD K L ++ F P F
Sbjct: 61 SGVIVFLSVYILFQLGAFGGGDAKGLIVLSILFPLYPVF 99
>gi|73749046|ref|YP_308285.1| type IV prepilin leader peptidase family protein [Dehalococcoides
sp. CBDB1]
gi|73660762|emb|CAI83369.1| type IV prepilin leader peptidase family protein [Dehalococcoides
sp. CBDB1]
Length = 255
Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 21/174 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLL 63
V + L+ + + DL +I N + + LL + L ++
Sbjct: 98 VELGISLLYLCVFITLFVIDLEKGLILNVIIYPFMVLALLLSPLYLQGDGLLANLSSSFF 157
Query: 64 VGLIVFIICFCFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
GL F + + + MG GD+K+ + G+ F++ + + G + +L
Sbjct: 158 GGLTGFGLFLLIYIASRGGMGEGDIKMAGFIGLVCGFPNIFVAIFAGIVLGGLAAAGLML 217
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
+ + IP+G +++G + + + L+
Sbjct: 218 SGKRRK----------------GQTIPFGPFLAVGAVTAMLFGSQIMEWYLALA 255
>gi|325262321|ref|ZP_08129058.1| type IV prepilin peptidase [Clostridium sp. D5]
gi|324032153|gb|EGB93431.1| type IV prepilin peptidase [Clostridium sp. D5]
Length = 257
Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 16/168 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V + + L AL D+ + I + S+ ++ + FL+ L ++ +
Sbjct: 104 VKAVLIFAFAGVLTVVALMDIDTMEIADGCSVAIVVLAVAGMFLMREITIGQRLIGMICI 163
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
V ++ GGGD+KL+ + ++ G S +F + + GG + + +
Sbjct: 164 SVPMLLLAIVIPGAFGGGDIKLMAAGGLFLGGRMVLASAVFGILLGGGYGIYLLASKKK- 222
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K + +G + G ++ +G+
Sbjct: 223 ---------------GRKEQFAFGPFLCAGMILGLLWGNQMIDWYLGI 255
>gi|182436303|ref|YP_001824022.1| putative type IV peptidase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178464819|dbj|BAG19339.1| putative type IV peptidase [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 285
Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 22/153 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----L 62
+L V A+ D +P+ +++ + + +L +
Sbjct: 133 ELVGWLALTPVAVLLAVVDRRVHRLPDPLTLPLAAAAVLLLGAAALLPGHAGSWTSGLLG 192
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ L F N MG GDVKL + V GW + F+ F + G + +
Sbjct: 193 GLALGGFYFLLFLINPNGMGFGDVKLALALGVALGWYGWTVLFVGGFAGFLFGAAYGLGL 252
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
+ +R + IP+G +
Sbjct: 253 VLLRRAG---------------RRTGIPFGPFM 270
>gi|83943498|ref|ZP_00955957.1| type 4 prepilin leader peptidase [Sulfitobacter sp. EE-36]
gi|83845730|gb|EAP83608.1| type 4 prepilin leader peptidase [Sulfitobacter sp. EE-36]
Length = 151
Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 25/167 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVG 65
VF LI L DL +P+R ++ ++ L+T L ++G
Sbjct: 3 VFILSSLILIPILGQLVRIDLRQHRLPDRYTLPLICVGLVTNALAQRALPTEAIWGAIIG 62
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+VF + + +G GD KLL++ W G L G +
Sbjct: 63 YVVFWLIGAVYFRSRGQEGLGLGDAKLLSAAGAWVGVFALPWVVLLSALGALGYAVL--- 119
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ ++ +G I+ L+ + LF
Sbjct: 120 -----------------SGHGRQERLAFGPWIAGALLLIWFGKGLFS 149
>gi|269139556|ref|YP_003296257.1| prepilin peptidase [Edwardsiella tarda EIB202]
gi|267985217|gb|ACY85046.1| prepilin peptidase [Edwardsiella tarda EIB202]
gi|304559444|gb|ADM42108.1| Leader peptidase / N-methyltransferase [Edwardsiella tarda FL6-60]
Length = 219
Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 21/158 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
+ L + AL D S ++P+ ++ +L L+ L G
Sbjct: 69 IVWLCGLGFCTLSLALALIDRASLLLPDALTQPLLWLGLIWNALYQPTYLPQAVLGAAAG 128
Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ + F +GGGDVKLL + W GW L + +++
Sbjct: 129 YLALWLIAWGFWRWRGEQGLGGGDVKLLAALGAWCGWADLPALLLLASLLTLVGIAL--- 185
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + P+G A+ + GL
Sbjct: 186 -------------RHRWRGMSLAAPAPFGPALLVAGLW 210
>gi|329945676|ref|ZP_08293406.1| hypothetical protein HMPREF9056_01295 [Actinomyces sp. oral taxon
170 str. F0386]
gi|328528484|gb|EGF55458.1| hypothetical protein HMPREF9056_01295 [Actinomyces sp. oral taxon
170 str. F0386]
Length = 285
Score = 47.6 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 30/169 (17%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-------MLGSFLLTAFLLGMDYELIAL 60
+ V L L A D +PNR+ + L + +G + A
Sbjct: 127 ETIVALPIVALLGAACSVDAVCHRLPNRILGPASLWAGAATLALLAFSVAMGTPFPDAAR 186
Query: 61 HL------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF--LFFVAIL 112
+ + MG GD KL +W G+ + + +
Sbjct: 187 TALQITLCATCAGALVGAMVLIPGSGMGLGDAKLCAVLGLWLGYFGGAETAMGIILGFFI 246
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
GGI+++ ++ K I +G +++GG +S+
Sbjct: 247 GGIVAIALMI---------------CHLVGRKTLIAFGPYLALGGWLSW 280
>gi|84687269|ref|ZP_01015149.1| hypothetical protein 1099457000225_RB2654_21338 [Maritimibacter
alkaliphilus HTCC2654]
gi|84664702|gb|EAQ11186.1| hypothetical protein RB2654_21338 [Rhodobacterales bacterium
HTCC2654]
Length = 171
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 8/163 (4%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM----LGSFLLTAFLLGMDYELI 58
+ ++ V+ A+SD+ IPN+ + + L + +
Sbjct: 5 QPALLGLMFLPFAAVISVWVAISDMSRMKIPNKAVMALFGVYAVVGLAAVAMSVITLPDY 64
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+ ++ ++ F A ++G GD K + A + F I +
Sbjct: 65 LWRYVHLAVILLVGFVMNAAGLLGAGDAKFAAAMA----PFVALGDLSVFAFIFAAAILG 120
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ R+ + ++ P G+ + +G +
Sbjct: 121 GFVLHRIAKRVSFVRAAVPGWESWERDDFPMGLCLGIGLVAYL 163
>gi|238796998|ref|ZP_04640502.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC
43969]
gi|238719258|gb|EEQ11070.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC
43969]
Length = 124
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
+ SD+ ++ N++ I + + L F + +++ L + + F FN
Sbjct: 1 MLICYSDIRHRIVSNKLIITVAITTLALGFAKNNT-----VSIVIPLFALLAGYIIFHFN 55
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
++GGGDVKL+T + S L+ + G ++ + +L R
Sbjct: 56 LIGGGDVKLITVLLLTLTPGQSLDFILYTAIMGGVVMIIGMLINR--------------- 100
Query: 140 SFLMKNKIPYGIAISMGGLISYP 162
S + + +PY +AIS+G L++
Sbjct: 101 SDIQQRGVPYAVAISIGFLLALF 123
>gi|289522140|ref|ZP_06438994.1| type IV prepilin peptidase [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503976|gb|EFD25140.1| type IV prepilin peptidase [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 257
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 16/162 (9%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + CL ++L+D++S + + + + L LL +G L +
Sbjct: 102 ILSFVLWSCLFLSSLTDMYSGYVYDWLVLPFLAIGLLLRVFVGWQIFLDGILGACICGFL 161
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
I+ + + MG GD + + G L+ G +L +
Sbjct: 162 ILLIMYVSKGGMGSGDAIVAAAIGGVMGAWMGCLALYISFMCGGLTALSLLLVHK----- 216
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
K+ +P ++G ++ L
Sbjct: 217 -----------VGRKDHLPMAPFFAIGSFCTFLFGVKILAFL 247
>gi|291437946|ref|ZP_06577336.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
gi|291340841|gb|EFE67797.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
Length = 196
Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 22/159 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-----LHL 62
AV+L+ V A+ D +P+ +++ G+ L+ + + L
Sbjct: 44 ELAVWLLLAPVGVLLAVVDFRVQRLPDPLTLPFAGAALVLLGPVALTPGHAGEWTTALLG 103
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ L + MG GDVKL GW L F + G + +
Sbjct: 104 ALALGAGYLGLFLLNPAGMGFGDVKLALGAGAVLGWYGWPTVMLGTFAGFLFGALYGGAL 163
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ R + IP+G + G L
Sbjct: 164 VVARRAG---------------RRTTIPFGPFLIAGALA 187
>gi|160893392|ref|ZP_02074178.1| hypothetical protein CLOL250_00942 [Clostridium sp. L2-50]
gi|156864967|gb|EDO58398.1| hypothetical protein CLOL250_00942 [Clostridium sp. L2-50]
Length = 250
Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 30/172 (17%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD------------ 54
+ ++ + L D+ + IP +++++ +++ L +
Sbjct: 76 LQGIIYFLFLAVLTVVTFIDMDTMEIPFMLNVIIFVMGVVSLILQFVSDAVPGSEFLAMD 135
Query: 55 --YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
+ L ++ + + + F GGGD+KL+ + GW + + F + +
Sbjct: 136 EVTIVSRLIGMICISLPLYLIVLFIPEGFGGGDIKLMFAAGFLLGWKATVVGFFIGLILG 195
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
G + ++ +S + +G +S+G I+
Sbjct: 196 GIYGVICLV----------------RRSHGKNDHFAFGPFLSVGLAIALFCG 231
>gi|226328794|ref|ZP_03804312.1| hypothetical protein PROPEN_02694 [Proteus penneri ATCC 35198]
gi|225201980|gb|EEG84334.1| hypothetical protein PROPEN_02694 [Proteus penneri ATCC 35198]
Length = 143
Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 6/112 (5%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALHLLVGLIVFIIC 72
++ + D ++PN ++ ++ LL + + + + +++
Sbjct: 1 MLILSFFDADYFLLPNTLTYWLIFLGLLCNYTAYGLVPFDHAFYGFLGGVGLFYGIYLWG 60
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ ++G GDVKL + W G L + I +T +
Sbjct: 61 YFICQKCVLGFGDVKLFGAIGAWCGLEKLPYILLLGSFLGLSIYCAVFITTK 112
>gi|283850944|ref|ZP_06368229.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B]
gi|283573590|gb|EFC21565.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B]
Length = 165
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 12/133 (9%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D+ S IPNR++ + L+ + L L F++ F ++G GD
Sbjct: 25 DMRSRRIPNRITFPAMLV-LVALHGAFSGLPGLGEAALGLLGGFLVFLIPHLFGLLGAGD 83
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
VKL+ G + LF G V++ +R+
Sbjct: 84 VKLMAVVGAGLGSQALLTAVLFTSVAGGLQFFVWLAWLRLARPGATAGY----------- 132
Query: 146 KIPYGIAISMGGL 158
++ YG AI+ G L
Sbjct: 133 RLCYGPAIAAGAL 145
>gi|332297906|ref|YP_004439828.1| peptidase A24A prepilin type IV [Treponema brennaborense DSM 12168]
gi|332181009|gb|AEE16697.1| peptidase A24A prepilin type IV [Treponema brennaborense DSM 12168]
Length = 141
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 18/152 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ V ++ D+ + IP+ +++ LL G + +I+F +
Sbjct: 4 FLFLCFAVPISIVDIKTMHIPDWLTVSGCIMLLLYYL--GFHRTELPAAAAGAVIIFTVF 61
Query: 73 FCFFAF--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ N +G GDVK ++ + + + + L
Sbjct: 62 YLVRKLTSNGLGFGDVKYSFLCGLYGAFPVIVFGCIISAVLGLCCYGLVAL--------- 112
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
F + + +IP+ +S G LI++
Sbjct: 113 -----FNGTERIRRMRIPFAPFMSAGTLIAFF 139
>gi|156975626|ref|YP_001446533.1| prepilin peptidase CpaA [Vibrio harveyi ATCC BAA-1116]
gi|156527220|gb|ABU72306.1| hypothetical protein VIBHAR_03359 [Vibrio harveyi ATCC BAA-1116]
Length = 147
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 13/154 (8%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
V++ +LSD+ I N +V+ + L V I
Sbjct: 2 LFVYITLAIVCFVVSLSDIRERTIKNSHVLVIAVLAIAIGIADF-----SLSSLWVIGIC 56
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ ++GGGDVKL+ + ++ + +F G + ++++ +R
Sbjct: 57 WSALLFLHVLGVLGGGDVKLIAAFSLSLPTQSLLEALIFVGIYGGILAVIYLILLR---- 112
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + +PYG+AI G +
Sbjct: 113 ----PSHVTGEGDIPQIGLPYGVAICCGFYTALL 142
>gi|86360578|ref|YP_472466.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42]
gi|86284680|gb|ABC93739.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42]
Length = 181
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 12/170 (7%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + V + ++AA +D S IPN V + ++ + L A + E +
Sbjct: 1 MTPMIGMIVVVNSLSVLLFLYAAWTDFRSWKIPNAVVLALMTVYALRAVAAMLGSEDLGA 60
Query: 61 HL----------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
L GL++F++ +AF + G GD KL ++ GW +
Sbjct: 61 ALFASSGIGGDVGAGLLMFMLGVALWAFRLFGAGDAKLFLPIGLFVGWHGMLPFSFLLLV 120
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ G++++ L + + + + + KIPYG+ + L++
Sbjct: 121 L--GVMTLLALRLPVPLSVAHLAFFMRIEEIRASRKIPYGVIMVFATLLT 168
>gi|313893594|ref|ZP_07827163.1| peptidase, A24 family [Veillonella sp. oral taxon 158 str. F0412]
gi|313441865|gb|EFR60288.1| peptidase, A24 family [Veillonella sp. oral taxon 158 str. F0412]
Length = 185
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 22/173 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
K + A++ ++ A D+ ++P+ ++ ++ ++ +++ + L
Sbjct: 31 KAISFIHVALYAAFSLIIIAGATIDMHYYILPDEGAMALVLGGIIYSYINDKSMLITLLS 90
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + + G GDVK ++ A W F + L +
Sbjct: 91 VMS-VGAITYGLRLMSHKGFGLGDVKWFSAIATWLTPWEIVCFFYVAFCVGSLYLLL--- 146
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G + GG + +V L
Sbjct: 147 ------------------TGYRNRYIPFGPFLCFGGWCALHGGLYMEVIYQWL 181
>gi|326776932|ref|ZP_08236197.1| peptidase A24A prepilin type IV [Streptomyces cf. griseus
XylebKG-1]
gi|326657265|gb|EGE42111.1| peptidase A24A prepilin type IV [Streptomyces cf. griseus
XylebKG-1]
Length = 287
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 22/153 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----L 62
+L V A+ D +P+R+++ + + +L +
Sbjct: 135 ELVGWLALTPVAVLLAVVDRRVHRLPDRLTLPLAAAAVLLLGGAALLPGHAGSWTSGLLG 194
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ L F N MG GDVKL + V GW + F+ F + G + +
Sbjct: 195 GLALGGFYFLLFLINPNGMGFGDVKLALALGVALGWYGWTVLFVGGFAGFLFGAAYGLGL 254
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
+ +R + IP+G +
Sbjct: 255 VLLRRAG---------------RRTGIPFGPFM 272
>gi|269118883|ref|YP_003307060.1| peptidase A24A domain protein [Sebaldella termitidis ATCC 33386]
gi|268612761|gb|ACZ07129.1| peptidase A24A domain protein [Sebaldella termitidis ATCC 33386]
Length = 239
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
L+ A+ D+ + +IP+R I++L + L + L GL V ++
Sbjct: 100 FVYSILLAASFIDIETHIIPDRFFIILLITGFLYSVLRNNPENWFLGAASYGLPVLLLYS 159
Query: 74 C--FFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSVFILTVRMITNH 129
F I+G GDVKL+ + + ++ L F + I GI S F++ R T
Sbjct: 160 ASDFINKEIIGFGDVKLICAAGGFISYSGLKNLLWFYEILYISAGIFSFFLIFFRKRTLK 219
Query: 130 IPIFGMFV 137
+
Sbjct: 220 CYVAFAPF 227
>gi|149178333|ref|ZP_01856925.1| Peptidase A24A-like protein [Planctomyces maris DSM 8797]
gi|148842859|gb|EDL57230.1| Peptidase A24A-like protein [Planctomyces maris DSM 8797]
Length = 349
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 56/183 (30%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLG-------------------------------- 52
D +IP++++I + +L A + G
Sbjct: 132 IDFREYLIPDQITIPGMLIGVLGATIAGHLQIIHLWVDWNQAVPGLTGPYIPEWIKAHSH 191
Query: 53 -----MDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
+ + + + ++ +G GDV L+ + GW L
Sbjct: 192 WHGLSWSLTGLIVGGGLTWGLRLVSSVLLGQEALGLGDVTLMAMVGSFLGWQAILPILLL 251
Query: 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
I + + K +PYG + LI F
Sbjct: 252 APLCGILIGFL-------------------TRVMTGKTYLPYGPYLCAATLIVLMSWKWF 292
Query: 168 KVA 170
+A
Sbjct: 293 WLA 295
>gi|307245414|ref|ZP_07527502.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|307254369|ref|ZP_07536207.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|306853755|gb|EFM85972.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|306862668|gb|EFM94624.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
Length = 142
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 20/158 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ S + + L+ +DL +I NRV + +L + ++L+ +
Sbjct: 2 TLFISTLIAVMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLMYGS-----ISWFP 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
++ +I F F N++G GDVKLL + + ++ + L R
Sbjct: 57 AILCLVIGFVLFLLNVIGAGDVKLLAVLMLAVPSPFAVFFLFLTACAGLLLIIIGWLFYR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +PYGIAIS G L +
Sbjct: 117 KA---------------IREKGLPYGIAISAGFLTTLL 139
>gi|261402262|ref|YP_003246486.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7]
gi|261369255|gb|ACX72004.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7]
Length = 340
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
AV++I L+ A+++D+ +IP++ I+M L+ + ++ F
Sbjct: 6 AVYIINFILLILASITDIKERIIPHKYVIIMAVLNLIVGYHYFG-----INAVIAFFTTF 60
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
I+C MGGGDVKL T+ A F + SF+ ++
Sbjct: 61 ILCLILSI--GMGGGDVKLFTALAPIFAYPDSFIFYV 95
>gi|134046086|ref|YP_001097572.1| preflagellin peptidase [Methanococcus maripaludis C5]
gi|132663711|gb|ABO35357.1| preflagellin peptidase, Aspartic peptidase, MEROPS family A24B
[Methanococcus maripaludis C5]
Length = 230
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGLIV 68
++I L+ A++ D S I + + I + +L A + ++ + +I
Sbjct: 4 YVIGALGLIIASVMDFRSREIEDYIWIFLAVFGILFAIYSSITLSDYSILINSISGFVIC 63
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
FI+ + F + +GGGD K+L + +
Sbjct: 64 FILGYMMF-LSGIGGGDGKMLIGLGALVPKFQMPIYTSLGTLL 105
>gi|148642206|ref|YP_001272719.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061]
gi|148551223|gb|ABQ86351.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061]
Length = 289
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALH 61
++F ++ AA+ D+ + +I NR+++ +L L++ L + + + I
Sbjct: 4 SIIFLVQIIVTSLFCCLAAIFDVKTGIISNRLNLSLLIFGLISNLFLSVLSANIKYILCS 63
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
++ + +I+ F F+ I GGGDVKLLT+ A + +
Sbjct: 64 IISMFVTYIVTFLFWKLKIWGGGDVKLLTAIATVIPFGINLDFL 107
>gi|326445354|ref|ZP_08220088.1| hypothetical protein SclaA2_30007 [Streptomyces clavuligerus ATCC
27064]
Length = 239
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 20/150 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFIIC 72
C + AL DL +P+ +++ L + E +L ++ ++
Sbjct: 102 LTACGITLALIDLAVQRLPDVLTLPACAGTFLLLAGAALAGEPGSLGRATAAAAVLTLVF 161
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSVFILTVRMITNHI 130
A +G GDVKL + GW+ +LG + +V +L
Sbjct: 162 LLLAAVAGLGLGDVKLAPAVGALLGWSSWTGLWWGAAAGFVLGAVCAVILLAAGR----- 216
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
++++ +G + G L
Sbjct: 217 -----------DRRSQVAFGPFMVAGALAV 235
>gi|296284550|ref|ZP_06862548.1| type IV prepilin peptidase, cpaA [Citromicrobium bathyomarinum
JL354]
Length = 164
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 14/161 (8%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIAL 60
S + A+ + LV AA++DL S I N ++ + L + + + +AL
Sbjct: 1 MLSDYLHYALLIALAIALVTAAITDLRSRRIANWLTGGVALGAPLFWWASSLSLWPGVAL 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
V + F I FA MGGGDVKLLT+ A+W P + G +
Sbjct: 61 QFAVAVAAFAILAVLFALRAMGGGDVKLLTALALWIAPLPFLQLVFVMAILGGVL----- 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + + + IPYG+AIS GL
Sbjct: 116 --------TLAFGAWHIMRRRKERLAIPYGVAISAAGLWIL 148
>gi|15669025|ref|NP_247829.1| hypothetical protein MJ_0835.2 [Methanocaldococcus jannaschii DSM
2661]
gi|3219922|sp|P81324|Y83C_METJA RecName: Full=Uncharacterized protein MJ0835.2
gi|2826330|gb|AAB98835.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 339
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V++I L+ AA++D+ +IP++ +I M+ L+ + + I ++
Sbjct: 6 VVYIINFILLLLAAITDIKERIIPHKYTIAMIIINLVVGYY-YFGFNAIIAFFSTLILCL 64
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
I+ MGGGDVKL T+ A F + SF+ ++
Sbjct: 65 ILSI------GMGGGDVKLFTALAPIFAYPNSFVFYI 95
>gi|163791689|ref|ZP_02186083.1| signal peptidase (late competence protein) [Carnobacterium sp. AT7]
gi|159873037|gb|EDP67147.1| signal peptidase (late competence protein) [Carnobacterium sp. AT7]
Length = 250
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 16/144 (11%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+D+ ++P+R+ + L L L L G F F+ +GGG
Sbjct: 118 TDICYQLLPDRIMLFFLLWVFLGRLALHPHPFSSYLFSGFGFFCFFYLLYQFSSTPIGGG 177
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
DVKL + G+ + ++ + + I +++ ++ K
Sbjct: 178 DVKLFGIIGLLLGYNLTLIAIMIACFLALLIHFPLVVSKKIPY----------------K 221
Query: 145 NKIPYGIAISMGGLISYPDSYLFK 168
+ IP+ I +G +Y F
Sbjct: 222 HPIPFAPFIFLGTFSAYFLQDFFT 245
>gi|255262302|ref|ZP_05341644.1| peptidase A24A, prepilin type IV [Thalassiobium sp. R2A62]
gi|255104637|gb|EET47311.1| peptidase A24A, prepilin type IV [Thalassiobium sp. R2A62]
Length = 164
Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 5/155 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + + ++ + +DL I N + ++L+ FL+ + ++
Sbjct: 1 MSIPAIAAAWFLPFVAIIGIWVSYTDLKYLKIRNLAVYAIALTYLIAGFLV-LPTDVYLW 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ ++ + AF +MG GD K L + A + + + +L +
Sbjct: 60 QLVHLPVMLVFGMLLNAFGLMGAGDAKFLAAAA----PMVWLGDIVVLLGVYFAVLLISW 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
+ R+ N S+ + P G+ ++
Sbjct: 116 VCHRIAMNTGLRKLGPDWASWTSGKRFPMGLPLAA 150
>gi|322436002|ref|YP_004218214.1| Prepilin peptidase [Acidobacterium sp. MP5ACTX9]
gi|321163729|gb|ADW69434.1| Prepilin peptidase [Acidobacterium sp. MP5ACTX9]
Length = 314
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/195 (12%), Positives = 54/195 (27%), Gaps = 57/195 (29%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE---------- 56
V + F L+ + D + +P+ ++ + + L +
Sbjct: 120 VQILAIAVLGFLLIGLIVMDWQTQRLPDAFTLGGIFAGLFLVCTQAIFLGPTEAQINLTS 179
Query: 57 ---------------------------LIALHLLVGLIVFIICFCFFAF----NIMGGGD 85
L + + + + + +G GD
Sbjct: 180 HHLRMSSPGSFVGRGNVFLTGPEHLIFGRLLAVAGIAAILLTIRALYKAVRHRDGLGLGD 239
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
VK+L A + G+ P+ L+ + +L R
Sbjct: 240 VKMLAMVAAFLGFWPTILTLFLGTFLASAYAIPLVLRRRANAL----------------T 283
Query: 146 KIPYGIAISMGGLIS 160
K+P+G + + GL++
Sbjct: 284 KLPFGSFLGIAGLLA 298
>gi|251795279|ref|YP_003010010.1| peptidase A24A prepilin type IV [Paenibacillus sp. JDR-2]
gi|247542905|gb|ACS99923.1| peptidase A24A prepilin type IV [Paenibacillus sp. JDR-2]
Length = 171
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 1/123 (0%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
+DL S IPN +++ L + A G + L + F+ +G
Sbjct: 17 YTDLKSMTIPNLLTVPFLAGGFVYALFSGGG-HGLLLAIYGAAAGFVPLLILHLAKGIGA 75
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKL + W G ++ + G + V ++ R +
Sbjct: 76 GDVKLFAALGAWIGTLAVLQLMMYAILYAGLVGLVLLVFHRPFARKMTAGMYTFVSLRFG 135
Query: 144 KNK 146
Sbjct: 136 GQA 138
>gi|271967798|ref|YP_003341994.1| prepilin peptidase [Streptosporangium roseum DSM 43021]
gi|270510973|gb|ACZ89251.1| prepilin peptidase [Streptosporangium roseum DSM 43021]
Length = 254
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 22/142 (15%)
Query: 30 AMIPNRVSIVM-----LGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+P+R+++ + + L A + L F + MG G
Sbjct: 127 HRLPDRLTLAAYLGTAALLAVTALYGGRFADLLGAGLGGLALAAFYLVLFLVNPAGMGLG 186
Query: 85 DVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
DVKL GW + ++ F + GG+ V ++ +R
Sbjct: 187 DVKLAAGLGTALGWLGWDTLVAGAFLGFLAGGLYGVALMILRRAG--------------- 231
Query: 143 MKNKIPYGIAISMGGLISYPDS 164
K++IP+G + +G +
Sbjct: 232 RKSEIPFGPFMVVGAFAAILTG 253
>gi|331085980|ref|ZP_08335063.1| hypothetical protein HMPREF0987_01366 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406903|gb|EGG86408.1| hypothetical protein HMPREF0987_01366 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 149
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 44/151 (29%), Gaps = 21/151 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNR-----VSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+I L A++D I N+ ++ F + +
Sbjct: 7 MIITGMLTKIAVTDWKEQKIFNQDVTILFCYCLMQLFFCLDQGEWGRLLFYVISGVCSAS 66
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
++ + GGGD+KL+ + G S S + + G + + ++
Sbjct: 67 GVLVLITILSPGAFGGGDIKLMAAVGSLLGPVKSLYSLTAAIILCGIYILAGMANGKIKR 126
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
N + +G + G L
Sbjct: 127 NSVVA----------------FGPFLCAGIL 141
>gi|254245569|ref|ZP_04938890.1| Peptidase A24A [Burkholderia cenocepacia PC184]
gi|124870345|gb|EAY62061.1| Peptidase A24A [Burkholderia cenocepacia PC184]
Length = 167
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 2/138 (1%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG-LIVFIIC 72
+ +SD+ I N + + L L A + + + +VG L+ I
Sbjct: 10 VFLTWAALVVVSDIRFRRISNVLVVAGLIGGLGAACVAASPFGISVHQAVVGMLVGLIGL 69
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
FF +MG DVK+ +W G + L ++ G+ ++ ++ + +
Sbjct: 70 IPFFLLRVMGAADVKIFAVLGIWCG-AHALLWLWVAASLAAGLHALAVMLLSRTSLGGLW 128
Query: 133 FGMFVPKSFLMKNKIPYG 150
PY
Sbjct: 129 RRREPALILGRYRATPYA 146
>gi|292489344|ref|YP_003532231.1| type II secretion system protein OutO [Erwinia amylovora CFBP1430]
gi|292898432|ref|YP_003537801.1| type 4 leader peptidase [Erwinia amylovora ATCC 49946]
gi|291198280|emb|CBJ45386.1| type 4 leader peptidase [Erwinia amylovora ATCC 49946]
gi|291554778|emb|CBA22587.1| Type II secretion system protein outO [Erwinia amylovora CFBP1430]
gi|312173509|emb|CBX81763.1| Type II secretion system protein outO [Erwinia amylovora ATCC
BAA-2158]
Length = 262
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLLVGLIVFIICFCFFAF-- 78
L D ++P+ +++ +L LL L + + G + + +
Sbjct: 125 LIDAEHQLLPDALTLPLLWLGLLVNLLEWLPHLTLTAAVSGAIAGYLSLALLAQGYRLLS 184
Query: 79 --NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
+ +G GD KLL + W GW P L L + V L R N FG
Sbjct: 185 GKDALGLGDAKLLAALGAWLGWQPLPLLLLLASVSGIVWVLVARLLFRRSLNAPLPFGP 243
>gi|237733224|ref|ZP_04563705.1| predicted protein [Mollicutes bacterium D7]
gi|229383768|gb|EEO33859.1| predicted protein [Coprobacillus sp. D7]
Length = 153
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 55/159 (34%), Gaps = 18/159 (11%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ + I L+ SD+ + IPN ++I + ++ L Y +
Sbjct: 5 NSNSFHSTLAPFILLVILIACGYSDVKNKKIPNILTISGILFGVIFNTYL-YGYTGLLSS 63
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L+ +++F++ + G GD+KLL + A + + + + +
Sbjct: 64 LISIVVIFVLFIVPYLLKQFGAGDIKLLITVASIMNFYYCIGATIMSSIFCAIYAIINSI 123
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
++ IP+G+ + +G +
Sbjct: 124 RLKSFKFT-----------------IPFGLFMCIGTIFY 145
>gi|320187040|gb|EFW61752.1| leader peptidase HopD [Shigella flexneri CDC 796-83]
Length = 95
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 4/93 (4%)
Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
+ +VG F + + + +G GDVK L + W W
Sbjct: 1 MFYQVCHPDGLADALWGTIVGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAF 60
Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+ G + + +L + P+
Sbjct: 61 LPRLVFLAASFACGAVVIGLLMRGKESLKNPLP 93
>gi|221213142|ref|ZP_03586118.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1]
gi|221167355|gb|EED99825.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1]
Length = 166
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 2/151 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M F A SD+ +PN + + L L+AFL + + L +G
Sbjct: 1 MAQLIFIGAFVAWAAFVAASDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIG 60
Query: 66 -LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI I FF +MG D+K+ W G + L ++ GI ++ ++ V
Sbjct: 61 MLIGLIAFVPFFLLRVMGAADLKVFAVLGAWCG-AHALLWLWIVASLAAGIHALVLMLVS 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
PY +
Sbjct: 120 RTPIRALWPQGQPVLMLGGHRATPYAACLVA 150
>gi|114798317|ref|YP_761341.1| prepilin peptidase [Hyphomonas neptunium ATCC 15444]
gi|114738491|gb|ABI76616.1| prepilin peptidase [Hyphomonas neptunium ATCC 15444]
Length = 218
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 19/146 (13%)
Query: 28 FSAMIPNRVSIVMLGSFL-LTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMG 82
+ ++P+R+++ + + A + + G + + + + +G
Sbjct: 86 RTYLLPDRLNLAVFLLGAGMIALYRQEVWPWHLAGAITGYGLLWLVGVAYRRLRGVDGLG 145
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GD KLL + +W G L + R +S
Sbjct: 146 RGDAKLLGAIGMWVGLQGIPPVLLIASLSGILAVLAGSAIRR--------------ESVS 191
Query: 143 MKNKIPYGIAISMGGLISYPDSYLFK 168
++ I +G I++ G I + L
Sbjct: 192 GQSMIAFGPWIALAGYIVWLMPALLP 217
>gi|172087796|ref|YP_001816738.1| hypothetical protein VF_A1179 [Vibrio fischeri ES114]
gi|171902380|gb|ACB55706.1| hypothetical protein VF_A1179 [Vibrio fischeri ES114]
Length = 144
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 18/151 (11%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ D+ I NR+ +++L + G L +I+
Sbjct: 6 IIWWTFLFTISCIICYQDITRRTISNRMCLIVLIICIFLVIKNGN-----YSSLYYSVII 60
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F+ F F ++ GDVKL++S + L+F + GG++S+ +L ++I
Sbjct: 61 FLGGFILFIKKVIAAGDVKLISSFFIAINQNYQLLTFTII-LLAGGVISIVLLIHKIINK 119
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+PYG+ I +G L
Sbjct: 120 E------------NTTMTVPYGVPICIGCLF 138
>gi|331669780|ref|ZP_08370625.1| leader peptidase PppA [Escherichia coli TA271]
gi|331062693|gb|EGI34607.1| leader peptidase PppA [Escherichia coli TA271]
Length = 200
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
+ +I L+ A++ DL +P+ + +L + L+ A+ + + +LVG
Sbjct: 126 ALAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWTGLIAAWAQQSPLTLQDAVTGVLVGF 185
Query: 67 IVFIICFC 74
I F++
Sbjct: 186 ITFLLSAL 193
>gi|152993422|ref|YP_001359143.1| type 4 prepilin peptidase [Sulfurovum sp. NBC37-1]
gi|151425283|dbj|BAF72786.1| type 4 prepilin peptidase [Sulfurovum sp. NBC37-1]
Length = 246
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 24/148 (16%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L+ + D +P+ V+ L F L A+ ++ ++
Sbjct: 109 FAALLALVMIDFKYMAVPDNVNFTAL-IFALVQPNFLHSALYAAIAAGGLYLIGLLSSLL 167
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
MGG DV + + G+ F++ +
Sbjct: 168 ARRQAMGGADVIVAGTMGALLGFPNFFVAIFLSAILA----------------------- 204
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYPD 163
+P + +P+ ++M I Y
Sbjct: 205 MIPALIYRERGVPFVPFLAMATFIVYLY 232
>gi|312127124|ref|YP_003991998.1| prepilin peptidase [Caldicellulosiruptor hydrothermalis 108]
gi|311777143|gb|ADQ06629.1| Prepilin peptidase [Caldicellulosiruptor hydrothermalis 108]
Length = 262
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 20/172 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
V + + F L++ + D+ + I N + I+ + S LL G I +L G
Sbjct: 105 VRTWIAYFIGFVLIYISFVDVDTLEISNLSILILFVLSSLLYFLDKGFSLINIKHLILGG 164
Query: 66 LIVFIICFCFF---AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ + + MG GDV LL + V F + + + I + +L
Sbjct: 165 IYSSSLVLLIYLSSRGRAMGFGDVLLLFAGGVGFDFGKAVVVNFLSFVIGAIYGVLLLLL 224
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
R +K +IP+ I+M ++ +GL
Sbjct: 225 KRK----------------TVKAQIPFAPFIAMSIYLTLIFGDHIVKWYLGL 260
>gi|77919343|ref|YP_357158.1| Flp pilus assembly protein, protease CpaA [Pelobacter carbinolicus
DSM 2380]
gi|77545426|gb|ABA88988.1| Flp pilus assembly protein, protease CpaA [Pelobacter carbinolicus
DSM 2380]
Length = 202
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V L L +D + IPN ++ ++ L+T ++ I + + +
Sbjct: 33 MVILAASGYLFLICATDTLYSKIPNICTLALITIGLVTNIVIS-GLPGIIVSITGFSVGL 91
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ F MG GDVK L + G +F FL+ I G + +F L
Sbjct: 92 ALLLIPFLLGGMGAGDVKALAALGALLGPGKTFQIFLYMGLIGGLLGIIFHLISTDTRKE 151
Query: 130 IPIFGMFVPKSFLMKN-------------KIPYGIAISMGGLI 159
+ + + +L ++ + PY AI+ G
Sbjct: 152 LRHYASMLKNVYLTRDYTSFKNYESRSTYRFPYATAIAFGFFA 194
>gi|160880950|ref|YP_001559918.1| peptidase A24A domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160429616|gb|ABX43179.1| peptidase A24A domain protein [Clostridium phytofermentans ISDg]
Length = 251
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V S ++ + L ++ D + IP +++ + L+ + + ++ LV
Sbjct: 101 VKSILYCLMISGLFILSVIDWRTFEIPFGINVYLFIIGLIREIVDEISISILLDFALVS- 159
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ F +GGGD+KL+ + + GW + ++ LFF + G ++ + + VR
Sbjct: 160 GFLLFLFLITRGRGIGGGDIKLMAAVGLILGWKLTIVA-LFFGCLYGSVIHIIRMKVRKA 218
Query: 127 TNHIPIFG 134
N + +
Sbjct: 219 ENVLAMGP 226
>gi|304405037|ref|ZP_07386697.1| peptidase A24A prepilin type IV [Paenibacillus curdlanolyticus YK9]
gi|304345916|gb|EFM11750.1| peptidase A24A prepilin type IV [Paenibacillus curdlanolyticus YK9]
Length = 159
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 60/152 (39%), Gaps = 6/152 (3%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
+V A +D+ S IPN ++ + L A +L + L+ + +
Sbjct: 8 CVLVVIAFATDVRSMRIPNWLT-GGSFAAALLAHVLAAGVGGLQFALVGAVAGLVPLVTM 66
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
+A +G GDVKL + W G + F++ + G + + ++ R++ +
Sbjct: 67 YAIKGVGAGDVKLFAALGAWLGTSDIIQLFVYSILYAGALGVLMLVIRRLLVVGAAMRES 126
Query: 136 F-----VPKSFLMKNKIPYGIAISMGGLISYP 162
+ V F + P+ +A++ + +
Sbjct: 127 WGAVVAVSGLFAGGTRFPFMLAVAPAAVTCWL 158
>gi|288573321|ref|ZP_06391678.1| peptidase A24A domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288569062|gb|EFC90619.1| peptidase A24A domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 259
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 16/155 (10%)
Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
+ ++ AL+DL S I + ++ + + L G + L + I
Sbjct: 112 WLMMLNALTDLQSGYIYDHLAGAIAVAGALLRIFGGTEALLDGVIGAATAAGIIAIIVIL 171
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+ MG GD L+ GW + ++ I G + +L +
Sbjct: 172 SRGGMGWGDATLMGGAGAILGWKMALIATYLGFMIGGLFAVLLVLLKK------------ 219
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
K+ +P ++ G + + L
Sbjct: 220 ----AARKDSVPLAPFLTAGFMAALVWGPDILGYL 250
>gi|220927965|ref|YP_002504874.1| peptidase A24A prepilin type IV [Clostridium cellulolyticum H10]
gi|219998293|gb|ACL74894.1| peptidase A24A prepilin type IV [Clostridium cellulolyticum H10]
Length = 167
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++I ++F+ +SD+ ++ I N + + + L+ L + ++
Sbjct: 2 IKYIILFLLVLFSVVSDIRTSKIRNIHTASAMLAGLVINTHLS-GMYGFKESMEGIILPV 60
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ FF ++G GD+KL +S FG + + I G V + R
Sbjct: 61 FLFGIFFYARLIGAGDIKLFSSIGAVFGIDFVIMVIAYSFLICGLYSLVMLCIKRK 116
>gi|34557087|ref|NP_906902.1| type IV prepilin peptidase [Wolinella succinogenes DSM 1740]
gi|34482802|emb|CAE09802.1| TYPE IV PREPILIN PEPTIDASE [Wolinella succinogenes]
Length = 224
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 54/174 (31%), Gaps = 22/174 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M+E + + + L+ ++ D+ + +P+ ++ + L + L L +
Sbjct: 71 MREGFVWPALALGVSFGLLLALSVIDIKTQKVPDSLNFIALLAALAYGASLESLEAAFII 130
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ L+ F + + MG GD+ L + G + ++
Sbjct: 131 AGALTLLRFGLSWIL-HQEAMGEGDIILAATMGAILGVKLALVAVFVA------------ 177
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + +KI + +S+G I Y L
Sbjct: 178 ---------ALLALPVMLLLSKKDSKIAFIPFLSLGLWIVYGGQDWILSYLESW 222
>gi|159904729|ref|YP_001548391.1| peptidase A24B [Methanococcus maripaludis C6]
gi|159886222|gb|ABX01159.1| Peptidase A24B, FlaK domain protein [Methanococcus maripaludis C6]
Length = 230
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGLIV 68
++I L+ A++ D S I + + I + +L A + ++ + +I
Sbjct: 4 YIIGALGLIIASVQDFRSREIEDYIWIFLAVFGVLFAIYSSITLLDYSILINSISGFVIC 63
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
FI+ + F + +GGGD K+L + +
Sbjct: 64 FILGYMMF-LSGIGGGDGKMLIGLGALVPKFQMPIYTSLGTLL 105
>gi|310765070|gb|ADP10020.1| Type IV-A prepilin peptidase PilD [Erwinia sp. Ejp617]
Length = 262
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLLVGLIVFIICFCFFAF-- 78
L D ++P+ +++ +L L L + + G + + +
Sbjct: 125 LIDAEHQLLPDALTLPLLWLGLSVNLLEWLPHLTLAAAVSGAIAGYLSLALLAQGYRLLS 184
Query: 79 --NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+ +G GD KLL + W GW P L L + + L R N FG F
Sbjct: 185 GKDALGLGDAKLLAALGAWLGWQPLPLLLLLASVSGIIWVLLGRLLFRRSLNAPLPFGPF 244
>gi|251778068|ref|ZP_04820988.1| type IV leader peptidase family protein [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243082383|gb|EES48273.1| type IV leader peptidase family protein [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 252
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/177 (11%), Positives = 50/177 (28%), Gaps = 22/177 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM----DYEL 57
+ + L+ + D + I I + S ++ +
Sbjct: 90 NYGLTFDFVKYSLLSSLLIVIGIIDYKTQDIYTVTIIFGVISSVIFMAIDFFVNKNSIST 149
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
L L+G + I MG GD ++ ++ G ++ + I G +
Sbjct: 150 YVLGGLIGFLALAIIVIITK--GMGIGDAEITLVCGLFLGIKGVIVTLFLGIIIGGIVAI 207
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + K K+ + +G +S+ L+ + +
Sbjct: 208 IILAL----------------KLKDAKDAMAFGPCLSVAALMYILWGDTIINVYLKM 248
>gi|315924771|ref|ZP_07920988.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621670|gb|EFV01634.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 254
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 50/175 (28%), Gaps = 31/175 (17%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L L+ AL D+ + I + + + +L A L L + G
Sbjct: 102 TTLKVLGFAGILMAVALVDIKTYTIADGLVAAGIVWWLAMAPLTLGTAWQTVLADIGGAF 161
Query: 68 VFIICFCFFA--------FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
V A +G GD+KL ++ G L L +
Sbjct: 162 VLAAVLWLVAWLFERRTGRRGLGDGDIKLCLMAGLYVGVWALSLFLLLACGFGLIFAAA- 220
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ KIP+G AI++ + AL+ +
Sbjct: 221 ----------------------TRQRKIPFGPAIALSAVFCVLAGGPIVTALLTV 253
>gi|311107635|ref|YP_003980488.1| type IV leader peptidase family protein 1 [Achromobacter
xylosoxidans A8]
gi|310762324|gb|ADP17773.1| type IV leader peptidase family protein 1 [Achromobacter
xylosoxidans A8]
Length = 173
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 19/158 (12%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------DYELIAL 60
+L+ +V +DL +PNR+ + L LL + L
Sbjct: 5 EVLWWLLFACWIVALIHADLRYRRVPNRLIVAGLAGQLLWLLAALLAPGWAYPPRWSGWL 64
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L G +V ++ + +MG GD+K + + G+ P ++ + G ++
Sbjct: 65 MALAGFLVAVLFLPLWRRRLMGAGDIKAIAVLGLLLGFAPLMVTLALASVLAGLHGLGYL 124
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
R V +IPY + +
Sbjct: 125 AVSR------------VWALSNRARQIPYAAYLGLAAF 150
>gi|259907433|ref|YP_002647789.1| Type IV-A prepilin peptidase PilD [Erwinia pyrifoliae Ep1/96]
gi|224963055|emb|CAX54538.1| Type IV-A prepilin peptidase PilD [Erwinia pyrifoliae Ep1/96]
gi|283477265|emb|CAY73178.1| Type II secretion system protein outO [Erwinia pyrifoliae DSM
12163]
Length = 262
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLLVGLIVFIICFCFFAF-- 78
L D ++P+ +++ +L L L + + G + + +
Sbjct: 125 LIDAEHQLLPDALTLPLLWLGLSVNLLEWLPHLTLAAAVSGAIAGYLSLALLAQGYRLLS 184
Query: 79 --NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+ +G GD KLL + W GW P L L + + L R N FG F
Sbjct: 185 GKDALGLGDAKLLAALGAWLGWQPLPLLLLLASVSGIIWVLLGRLLFRRSLNAPLPFGPF 244
>gi|302875179|ref|YP_003843812.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B]
gi|307688856|ref|ZP_07631302.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B]
gi|302578036|gb|ADL52048.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B]
Length = 159
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L++ +LSD+ +IP++V I++L L+ ++ + L L + I F I
Sbjct: 27 FLYAVILLYVSLSDIKIRIIPDKVHIMILLVSLI-----NINLKDSLLGLFLVSIPF-II 80
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ N +GGGD+KL+ ++ G F +I+G ++
Sbjct: 81 TALISENGIGGGDIKLMGASGFLLGVKGG-----FLASIIGLATAIV-----------TK 124
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ KS P +S+G +SY S F
Sbjct: 125 KVSYKIKSTNKDEAFPLAPYLSIGCFLSYLISGGF 159
>gi|32477846|ref|NP_870840.1| signal peptide [Rhodopirellula baltica SH 1]
gi|32448403|emb|CAD77918.1| hypothetical protein-signal peptide and transmembrane prediction
[Rhodopirellula baltica SH 1]
Length = 141
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 1/129 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+F + + LV+A+L DL + IP+ +S+++ ++++ L + I L G+
Sbjct: 1 MFLLIASMIACLLVWASLHDLRTREIPDWISVLIGVVAIVSSLLGWLGL-SIVWVLAGGV 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ +I F F +GGGD KL+ + A+ G + G + + +L +
Sbjct: 60 VGLVIASALFRFAKLGGGDGKLIIALAMLVGPVGILIVLFGMAITGGVLSLIAMLRGQRD 119
Query: 127 TNHIPIFGM 135
++P
Sbjct: 120 YAYVPAIAA 128
>gi|124023432|ref|YP_001017739.1| type 4 prepilin peptidase [Prochlorococcus marinus str. MIT 9303]
gi|123963718|gb|ABM78474.1| putative type 4 prepilin peptidase [Prochlorococcus marinus str.
MIT 9303]
Length = 258
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 37/159 (23%), Gaps = 29/159 (18%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI---- 80
DL +P + L L + L+ + A
Sbjct: 108 IDLDHMWLPEPLCRAGLWLGLAFTATAAVSLGWSKGSDLLLDHLLAAAAALIAMEGLSFL 167
Query: 81 ---------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+G GD KL W G ++ + + + LT +
Sbjct: 168 SKKLIGQPALGLGDAKLAALAGAWLGLKGVAMAMTLAIISGATVGLIGRLTGQ------- 220
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ P+G I+ G + +
Sbjct: 221 ---------LQPRQPFPFGPFIAFGVWGVWLCGSGWWWQ 250
>gi|303228384|ref|ZP_07315217.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Veillonella atypica ACS-134-V-Col7a]
gi|302516886|gb|EFL58795.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Veillonella atypica ACS-134-V-Col7a]
Length = 188
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/170 (11%), Positives = 53/170 (31%), Gaps = 18/170 (10%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ + L+ A D ++P+ +I + +L + + +H+L+
Sbjct: 27 TLFEIICYSFFSLFLIIGATIDKLYFILPDEGAIALTIIGILYSIVEQHAVFDTCVHVLI 86
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ I + G GD+K +++ ++W + L+
Sbjct: 87 VASISIALRIL-SRGGFGWGDIKWMSAISIWLTNIQIIVMIYVSCFASVLYLASLYSIRN 145
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G + +G + + +++ +
Sbjct: 146 -----------------TGRRYIPFGPFLCIGAWSALHFANVWEAIYWSV 178
>gi|154503359|ref|ZP_02040419.1| hypothetical protein RUMGNA_01183 [Ruminococcus gnavus ATCC 29149]
gi|153796026|gb|EDN78446.1| hypothetical protein RUMGNA_01183 [Ruminococcus gnavus ATCC 29149]
Length = 153
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 16/168 (9%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + I F V ++SD + IP+R + +L +L A + + +
Sbjct: 1 MMTMLLKSILIFIFVVISISDWRTHKIPDRWNAGILLVAVLLALVDPSVSWQERILGMFA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ V + C FF GGGD+K + + V G + +L GI + +L +
Sbjct: 61 VSVPMACLLFFVPGSFGGGDIKFVAAVGVAIGVKLVVMGS-AAAILLAGIYCIRLLAEKR 119
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K +G + MG + + +
Sbjct: 120 NG---------------QKTAFAFGPFLCMGMTAAMVFGDAWAAWFLS 152
>gi|254521133|ref|ZP_05133188.1| family A24A unassigned peptidase [Stenotrophomonas sp. SKA14]
gi|219718724|gb|EED37249.1| family A24A unassigned peptidase [Stenotrophomonas sp. SKA14]
Length = 176
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 50/165 (30%), Gaps = 20/165 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFI 70
++ + A+SDL++ +PN + + + + + +
Sbjct: 1 MLAIGVCLRIAISDLYARRVPNAWLLAACALAVPLLIAGQFSTPRLPWGSHVAGAALGLV 60
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F+A MG GDVK + G ++ G+ ++ +L R + +
Sbjct: 61 ALLPFYAVRWMGAGDVKFFAVLGLLLGLEALLP-IWVTASLGAGLHALVVLASRRLGPML 119
Query: 131 PIFGMFVPKSFLM-----------------KNKIPYGIAISMGGL 158
P + IPY +++ +
Sbjct: 120 PTGLQLQMTRASSQWQSHPALRELQSARQGRYGIPYAAYLALSAI 164
>gi|209546486|ref|YP_002278404.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537730|gb|ACI57664.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 178
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 12/165 (7%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL---- 62
+ + + ++AA +D + IPN V + ++ ++L A + + E + L
Sbjct: 4 LVVVINYLSVLLFLYAAWTDFRTWKIPNTVVLALVTLYVLRAVAVILSSEDVGAALFASS 63
Query: 63 ------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
GL++F++ +A + G GD KL ++ GW F + + GI+
Sbjct: 64 GIGGDVGAGLLMFMLGVVLWALRLFGAGDAKLFLPIGLFVGWHSMLPFSFFLLVL--GIV 121
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
++ L + + + K+PYG+ + L++
Sbjct: 122 TLLALRLPVPLPVAHLAFFMRIAEIRASRKVPYGVVMVFAVLLTL 166
>gi|323142272|ref|ZP_08077104.1| type IV prepilin leader peptidase domain protein
[Phascolarctobacterium sp. YIT 12067]
gi|322413156|gb|EFY04043.1| type IV prepilin leader peptidase domain protein
[Phascolarctobacterium sp. YIT 12067]
Length = 129
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 18/135 (13%)
Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
++ ++ ++++ L+ A+ ++ ++ I+ ++ F + MG GDVKL
Sbjct: 1 MLLYDKTTLILAAVGLVRAWYERQLFDAAYGAGIILAIMLVLYFA--SRGGMGEGDVKLA 58
Query: 90 TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
+ +W G L L G + ++ +L R +K IP+
Sbjct: 59 PALGIWLGLEQGVLCLLLAFISGGIVGALLLLCRRGK----------------LKQAIPF 102
Query: 150 GIAISMGGLISYPDS 164
G + + +Y
Sbjct: 103 GPFLCAAAVTAYFWG 117
>gi|258544198|ref|ZP_05704432.1| type IV prepilin leader peptidase [Cardiobacterium hominis ATCC
15826]
gi|258520574|gb|EEV89433.1| type IV prepilin leader peptidase [Cardiobacterium hominis ATCC
15826]
Length = 163
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 27/176 (15%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYEL 57
+K A L+ + L+ D ++P+ +++ ++ ++ A + G +
Sbjct: 2 LKYPDPWQLAFALLLTWGLLALIFIDAEQQILPDVITLPLMWLGIVAACVQGGLFIGLRE 61
Query: 58 IALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
+ +VG + + F MG GD KLL W G LFF A+ G
Sbjct: 62 SVIGAMVGYLSLWSVYWLFRLVTGKEGMGYGDFKLLALLCAWQGI-VMLPFILFFSALTG 120
Query: 114 GILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ ++ + +G +++ G +++
Sbjct: 121 IVFALI-------------------NRIGYGVPMAFGPYLAIAGWLTFMYGGEIAA 157
>gi|163857695|ref|YP_001631993.1| putative Flp pilus assembly protease [Bordetella petrii DSM 12804]
gi|163261423|emb|CAP43725.1| putative Flp pilus assembly protease [Bordetella petrii]
Length = 142
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 36/119 (30%), Gaps = 7/119 (5%)
Query: 26 DLFSAMIPNRVSIVMLG-------SFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
D +PN + + + L L+G + ++ +
Sbjct: 5 DWRHRRVPNVLVVAGASFQGLWAGAAALKVGWHYPPMWTSWGMALLGFAMALLFVPLWMR 64
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG D+K++ + + G + + GG +++ R T + +
Sbjct: 65 RSMGAADIKVIAAYGLMLGPRGLLAVLMLGSLLAGGHALLYLGASRRWTLPHSLGRVPY 123
>gi|187934585|ref|YP_001887489.1| leader peptidase [Clostridium botulinum B str. Eklund 17B]
gi|187722738|gb|ACD23959.1| leader peptidase [Clostridium botulinum B str. Eklund 17B]
Length = 252
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 22/178 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM----DYE 56
+ + + I L+ + D + I I + ++ +
Sbjct: 89 LNYGLTLEFFKYSILSSLLIVIGIIDYKTQDIYTVTIIFGIICSIIFMAVDFFVNKNTIS 148
Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
L L+G I MG GD ++ ++ G ++ + I G +
Sbjct: 149 TYVLGGLIGFAALAIIVIITK--GMGIGDAEITLVCGLFLGIKGVIVTLFLGIIIGGIVA 206
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ + K K+ + +G +S+G ++ A + +
Sbjct: 207 IIILAL----------------KLKDAKDAMAFGPCLSIGAIMYILWGDTIINAYLKM 248
>gi|239908140|ref|YP_002954881.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
gi|239798006|dbj|BAH76995.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
Length = 165
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 29 SAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKL 88
+ IPNR++ L + LL +I +AF ++G GDVKL
Sbjct: 28 TRRIPNRITFPAAVLILGIQAW-FYGLSGLGDSLLGLAGALLIFLIPYAFRVLGAGDVKL 86
Query: 89 LTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
L G + LF G +++++ +R
Sbjct: 87 LAVVGAGLGPSALVSLALFTSLAGGVQIALWLAAMR 122
>gi|150398940|ref|YP_001322707.1| peptidase A24B, FlaK-like protein [Methanococcus vannielii SB]
gi|150011643|gb|ABR54095.1| Peptidase A24B, FlaK-like protein [Methanococcus vannielii SB]
Length = 234
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 4/108 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI---ALHLL 63
+ ++I L+ A+ DL I + + I M + A L +
Sbjct: 3 ITLINYIIGAVGLLLASFQDLKKREIEDYIWISMSVIGFIYAIYLSYTLSDYNFLLNSVS 62
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+I F++ + F +GGGD K+L ++ +
Sbjct: 63 GFVICFVLGYLMFLL-GIGGGDGKILIGLGTLIPKYEMPITSALGALL 109
>gi|126208039|ref|YP_001053264.1| flp operon protein B [Actinobacillus pleuropneumoniae L20]
gi|126096831|gb|ABN73659.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
Length = 142
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 20/158 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ S + I L+ +DL +I NRV + +L + ++L+ L
Sbjct: 2 TLFISTLIAIMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLMYGTL-----SWLP 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
++ +I F F N++G GDVKLL + + + I+ + L R
Sbjct: 57 AVLCLVIGFVLFLLNVIGAGDVKLLAVLMLAVPSSFAIFFLFLTACSGLLIIIIGWLFYR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +PYGIAIS G L +
Sbjct: 117 QT---------------IREKGLPYGIAISTGFLTTLL 139
>gi|10956074|ref|NP_052161.1| prepilin peptidase-like protein [Chlorobium limicola]
gi|1688243|gb|AAB36934.1| prepilin peptidase homolog [Chlorobium limicola]
Length = 233
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 22/158 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA------LHLLVGLIV 68
L+ AL D + ++P+ V + + + L + L +
Sbjct: 92 FASTLLLLALIDWDTTLLPDWVVLPLGLAGLFGSHAGFTGKASSPAQHPPPWCLACSAGL 151
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
A + +GGGD+KLL + W+G + I V+ L R
Sbjct: 152 TGRSSVSGATSGIGGGDLKLLAALGAWWGVVDVLYMMMLASVI----TVVWNLAWRWFKG 207
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
P +G AI + L +
Sbjct: 208 LSPQAECA------------FGPAIVIAALAWSLSHPV 233
>gi|86608389|ref|YP_477151.1| prepilin peptidase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556931|gb|ABD01888.1| prepilin peptidase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 283
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 32/162 (19%)
Query: 29 SAMIPNRVSIVMLGSFLLTAFLLGM---------DYELIALHLLVGLIVFIICF------ 73
+ ++P ++ L LL L + + ++ +
Sbjct: 133 TFLLPEELTRSGLVVGLLARLALPWLQGSGSLAATGLSLVEGIAGAVLGLWLLEGIGLLA 192
Query: 74 -CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
MGGGD KLL +W GW ++ LF + + R
Sbjct: 193 RWVLGREAMGGGDGKLLALIGMWLGWQGVVVALLFGSGFGLLAGLLAMTKGR-------- 244
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G +++GG ++ +
Sbjct: 245 --------ARLGKPIPFGPYLALGGGVAALAGSQLVEGYLRW 278
>gi|218660281|ref|ZP_03516211.1| putative cpaA pilus assembly protein [Rhizobium etli IE4771]
Length = 171
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 12/160 (7%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL----------LVG 65
++AA +D + IPN + + ++ + L A + + E + L G
Sbjct: 13 VLLFLYAAWTDFRTWKIPNTIVLALVTLYALRAVAVMLGSEDVGAALFASSGIGGDVGAG 72
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L++F++ + F + G GD KL ++ GW + + GI+++ +L + +
Sbjct: 73 LLMFMLGVVLWVFRLFGAGDAKLFLPIGLFVGWHGMLPFSFLLLVL--GIVTLLVLRLPV 130
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ KIPYG+ + L++
Sbjct: 131 PLRVAHFAFFMRIEEIRASRKIPYGVLMVFAALLTLALQP 170
>gi|303230763|ref|ZP_07317510.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Veillonella atypica ACS-049-V-Sch6]
gi|302514523|gb|EFL56518.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Veillonella atypica ACS-049-V-Sch6]
Length = 188
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 18/170 (10%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ + LV A D ++P+ +I + +L + + +H+L+
Sbjct: 27 TLFEIICYSFFSLFLVIGATIDKLYFILPDEGAIALTIIGILYSIVEQHAVFDTCVHVLI 86
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ I + +G GD+K +++ ++W + L+
Sbjct: 87 VASISIALRIL-SRGGLGWGDIKWMSAISIWLTNIQIIVMIYVSCFASILYLASLYSIRN 145
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+G + +G + + +++ +
Sbjct: 146 -----------------TGRRYIPFGPFLCIGAWSALHFANVWEAIYWSV 178
>gi|150403489|ref|YP_001330783.1| peptidase A24B, FlaK-like protein [Methanococcus maripaludis C7]
gi|150034519|gb|ABR66632.1| Peptidase A24B, FlaK-like protein [Methanococcus maripaludis C7]
Length = 230
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGLIV 68
++I L+ A++ D S I + + I + +L A + + ++ + +I
Sbjct: 4 YVIGALGLIMASVMDFRSREIEDYIWIFLAVFGVLFAIYASITFSDYSILINSISGFVIC 63
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
FI+ + F + +GGGD K+L + +
Sbjct: 64 FILGYMMF-LSGIGGGDGKMLIGLGALVPKFQMPIYTSLGTLL 105
>gi|73669011|ref|YP_305026.1| hypothetical protein Mbar_A1491 [Methanosarcina barkeri str.
Fusaro]
gi|72396173|gb|AAZ70446.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 254
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSF--LLTAFLLGMDYELIALHLL 63
M+ L L+++ SDL S + N+V ML S + +L + +L
Sbjct: 1 MIEILKILFSIPFLLYSCYSDLNSRRVSNKVWKYMLASGSGFVFYEILTGGLSYLMPLIL 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
G++VF + F GGGD K L ++ F P F
Sbjct: 61 SGVLVFTAVYLLFQVGAFGGGDAKGLIVLSILFPSYPVF 99
>gi|292491516|ref|YP_003526955.1| peptidase A24A prepilin type IV [Nitrosococcus halophilus Nc4]
gi|291580111|gb|ADE14568.1| peptidase A24A prepilin type IV [Nitrosococcus halophilus Nc4]
Length = 175
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 15/165 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ F + F L A+ DL S IPN ++ L+ L++ + L
Sbjct: 5 ISFTAFSLLGFLLAAASYRDLKSHRIPNVLTFGGALLGLILQVWFLGLEGLLSGLGGLTL 64
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + + MG GDVKLL + + G + + G ++ + +L VR I
Sbjct: 65 GLLLYLPFYLLG-GMGAGDVKLLAAVGAFLGAKAILWVAIL-SLLAGSVIGMGVLLVRGI 122
Query: 127 TNHIPIFGMFVPKSF-------------LMKNKIPYGIAISMGGL 158
+ K + + PY +AI+ G L
Sbjct: 123 FLEVWRPYATTAKFLLLAGTYIPPEINRTLNTRFPYAVAIAAGTL 167
>gi|260462615|ref|ZP_05810821.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
WSM2075]
gi|259031521|gb|EEW32791.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
WSM2075]
Length = 174
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 7/154 (4%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL---LTAFLLGMDYELIALHLLV 64
+ ++ L A D + I NR +++L L L + + L +
Sbjct: 6 ALLLNVLAIPLLARIAWLDFKTQKITNRDVLLLLCLGAGRLLLLSLQSGSWWDMGLSAIA 65
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
L++ + F F+ +G GDVKL+ + + F +L + + V+
Sbjct: 66 ALLLLVAFFPFWVLRKVGAGDVKLMAVMPFLTSGSG----LVLFSMLLLVFALITVTVVK 121
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ K +P+G+ IS+ +
Sbjct: 122 APFMLPEGAFRLYIQHMDRKGVVPFGVPISVAAI 155
>gi|153833218|ref|ZP_01985885.1| TadV [Vibrio harveyi HY01]
gi|148870489|gb|EDL69404.1| TadV [Vibrio harveyi HY01]
Length = 139
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
L+ ++ ++ DL I N ++L + + L + L++
Sbjct: 1 MLVLFIVCLYVSIVDLLHRKIQNHTLFILLLFQCFLSP--------LDLQFITFLLMLGG 52
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+A +G GD+K ++ S + G + +++++ +
Sbjct: 53 GLILYALIWVGAGDIKYAAVLSLVIPLKDLPWSLVMTAFAGGFLAIIYLVSRK------- 105
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
V + + IPYGIAIS+G +
Sbjct: 106 ----LVTNTSNTQEGIPYGIAISIGFYLIIL 132
>gi|197284243|ref|YP_002150115.1| type IV prepilin-like leader peptidase [Proteus mirabilis HI4320]
gi|194681730|emb|CAR40886.1| putative type IV prepilin-like leader peptidase [Proteus mirabilis
HI4320]
Length = 210
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALHLLVGLIVFIICFCFF 76
+ D +P+ ++ +L + + + L ++ + + +
Sbjct: 75 SFFDADYLQLPDNLTFWLLFFGITLNLTPYGVISSTCSFYGCLVASLFFYSIYWLGYWIY 134
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
I+G GDVKL ++ W G F + I +
Sbjct: 135 QEAILGLGDVKLFSAIGAWCGIELLPYILFFAALLGIVIYMLIW 178
>gi|171913060|ref|ZP_02928530.1| peptidase A24A domain protein [Verrucomicrobium spinosum DSM 4136]
Length = 347
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 15/82 (18%)
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GD+ LL + GW + + + + I + +R
Sbjct: 263 REAMGYGDLFLLAMIGSFLGWQGALFTLVGASFLGSAIPLLGAAVLR------------- 309
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
S +KIP+G ++ +I
Sbjct: 310 --SKEWSSKIPFGPYLAAAAVI 329
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 6/82 (7%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIALHL 62
A+ I L+ DL ++P+ ++ L L + +
Sbjct: 79 LALHWIFITLLIAGTFIDLDHFLLPHEITFGGLAVGLAGTALVPGLLHESTTWRGFLASV 138
Query: 63 LVGLIVFIICFCFFAFNIMGGG 84
+ ++ + + G
Sbjct: 139 AGACVGALLIWLIIQLGKLAFG 160
>gi|188588741|ref|YP_001922433.1| type IV leader peptidase family protein [Clostridium botulinum E3
str. Alaska E43]
gi|188499022|gb|ACD52158.1| type IV leader peptidase family protein [Clostridium botulinum E3
str. Alaska E43]
Length = 252
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 51/175 (29%), Gaps = 18/175 (10%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ + L+ + D + I I + S ++ + +
Sbjct: 90 NYGLTFDFVKYSLLSSLLIVIGIIDHKTQDIYTVTIIFGVISSVIFMAIDFFVNKNAIST 149
Query: 62 LLVGLIV--FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
++G ++ + MG GD ++ ++ G ++ + I G + +
Sbjct: 150 YVLGGLIGFLALAIIVIITKGMGIGDAEITLVCGLFLGIKGVIVTLFLGIIIGGIVAIII 209
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ K K+ + +G +S+ L+ + +
Sbjct: 210 LAL----------------KLKDAKDAMAFGPCLSVAALMYILWGDTIINVYLKM 248
>gi|152978290|ref|YP_001343919.1| peptidase A24A prepilin type IV [Actinobacillus succinogenes 130Z]
gi|150840013|gb|ABR73984.1| peptidase A24A prepilin type IV [Actinobacillus succinogenes 130Z]
Length = 230
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 24/168 (14%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD------YELI 58
++ S F L A D +IP + ++ ++ + + +
Sbjct: 80 EITVSLYFAWLSALLYLIAKIDWHYRLIPPDLCQLVGIFGIIGSVFQFQPQSLEHAVQSL 139
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
+ V VF I + G GD L+ + + + W L V
Sbjct: 140 FIGFSVFWAVFYIARFIYRREAFGRGDYWLIGALSAFLPWQLLPLFIFTACISALIFTWV 199
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ I IP+ + G+ ++ + L
Sbjct: 200 RHAIGKGINM------------------IPFAPFLICAGISTFIWNVL 229
>gi|89899600|ref|YP_522071.1| peptidase A24A, prepilin type IV [Rhodoferax ferrireducens T118]
gi|89344337|gb|ABD68540.1| peptidase A24A, prepilin type IV [Rhodoferax ferrireducens T118]
Length = 192
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 23/179 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL------GMDYELIAL 60
+ + + L+ ++DL S IPN + + L + + +
Sbjct: 10 IAIMIHTLLAVMLLTVVIADLRSRRIPNTLVLTGLVLAFIAHTIALASGSVPLAGSTWWA 69
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L L + + + G GDVKL+ + G P+ LS + + + GG+LS+
Sbjct: 70 PLAGLLTGLLPLMPLYFLHATGAGDVKLMGMVGAFVG-APTVLSAVLYTLVAGGLLSLVF 128
Query: 121 LTVRMITNHIPIFGMFVPKSFLMK----------------NKIPYGIAISMGGLISYPD 163
+ R + F+ + ++ ++PY +AI++G +
Sbjct: 129 MLGRGVAAQTLANVRFLLTDWALRASSGQGARLAPLQTTAARLPYAVAIALGTGAALLW 187
>gi|259417425|ref|ZP_05741344.1| peptidase A24A prepilin type IV [Silicibacter sp. TrichCH4B]
gi|259346331|gb|EEW58145.1| peptidase A24A prepilin type IV [Silicibacter sp. TrichCH4B]
Length = 136
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 4/126 (3%)
Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
IPN + ++ L+ + LL I + F+A ++G GD K
Sbjct: 1 MRIPNWTVDTLALIYIFLGLLVMPTWADYGWQLLHLPAGIAIGYLFYASGLVGAGDAKFA 60
Query: 90 TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
+ A + + L + F L L R+ + +S+ + K P
Sbjct: 61 GAAAPYVAFADLKLIIIIFA----AALLSGFLAHRLARHTPLRRLAPDWQSWNVGVKFPM 116
Query: 150 GIAISM 155
G+ +
Sbjct: 117 GLCLGA 122
>gi|256810876|ref|YP_003128245.1| Peptidase A24A domain protein [Methanocaldococcus fervens AG86]
gi|256794076|gb|ACV24745.1| Peptidase A24A domain protein [Methanocaldococcus fervens AG86]
Length = 340
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ V+++ L+ A+++D+ +IP++ +I M+ L + ++ I +
Sbjct: 3 LLGIVYIVNFILLILASITDIGERIIPHKYTIAMIIMNLAVGYY-YFGFDAIVAFFSTFI 61
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
+ I+ MGGGDVKL T+ A F + SF+ ++
Sbjct: 62 LCLILSI------GMGGGDVKLFTALAPIFAYPNSFVFYI 95
>gi|26987313|ref|NP_742738.1| hypothetical protein PP_0575 [Pseudomonas putida KT2440]
gi|148545864|ref|YP_001265966.1| peptidase A24A, prepilin type IV [Pseudomonas putida F1]
gi|24981961|gb|AAN66202.1|AE016248_5 conserved hypothetical protein [Pseudomonas putida KT2440]
gi|148509922|gb|ABQ76782.1| peptidase A24A, prepilin type IV [Pseudomonas putida F1]
gi|313496949|gb|ADR58315.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
Length = 156
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 7/123 (5%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L + D+ I N +++ G L F G + + ++
Sbjct: 4 IVLLLWLALCSEQDVRQRQISNVLTLGAAGCALAWLFSTGHSWIGAEASEAGWALAIVML 63
Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ G DVKL+ + A+ +F I G+ + L R +
Sbjct: 64 LTLPGYMLGRFGADDVKLMGALALATSPQYVLGTF-----IGAGVTVLVWLLTRRRLWTL 118
Query: 131 PIF 133
Sbjct: 119 LNP 121
>gi|76809350|ref|YP_333433.1| putative fimbriae assembly-like protein [Burkholderia pseudomallei
1710b]
gi|254258317|ref|ZP_04949371.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
gi|76578803|gb|ABA48278.1| putative fimbriae assembly-related protein [Burkholderia
pseudomallei 1710b]
gi|254217006|gb|EET06390.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
Length = 176
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ + L AL+DL + + ++ + A A H +G F +
Sbjct: 24 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 83
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + GGDVKL +W G ++ + +V I R+
Sbjct: 84 AAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRVPRVLAW- 142
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F +PYG+A++ GGL++
Sbjct: 143 --------FAPARGVPYGVALAAGGLLA 162
>gi|53719433|ref|YP_108419.1| putative fimbriae assembly-related protein [Burkholderia
pseudomallei K96243]
gi|126439772|ref|YP_001058906.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
gi|52209847|emb|CAH35819.1| putative fimbriae assembly-related protein [Burkholderia
pseudomallei K96243]
gi|126219265|gb|ABN82771.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
Length = 172
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ + L AL+DL + + ++ + A A H +G F +
Sbjct: 20 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 79
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + GGDVKL +W G ++ + +V I R
Sbjct: 80 AAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRAPRVLAW- 138
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F +PYG+A++ GGL++
Sbjct: 139 --------FAPARGVPYGVALAAGGLLA 158
>gi|330813204|ref|YP_004357443.1| leader peptidase (Prepilin peptidase) / N-methyltransferase
[Candidatus Pelagibacter sp. IMCC9063]
gi|327486299|gb|AEA80704.1| leader peptidase (Prepilin peptidase) / N-methyltransferase
[Candidatus Pelagibacter sp. IMCC9063]
Length = 126
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 20/130 (15%)
Query: 47 TAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSF 102
+ +Y + + G ++ + F+ MG GD KLL WFGW
Sbjct: 13 LNQTIFPNYINSLIGGVFGYLIIWLIIFFYKKVRKKEGMGLGDAKLLAVVGFWFGWFSIP 72
Query: 103 LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + ++ KS M ++IP+G I + +
Sbjct: 73 FTIFMSSVVALIFVIPSLI----------------NKSRKMSSQIPFGPYIIIAVIFYVF 116
Query: 163 DSYLFKVALM 172
S K L+
Sbjct: 117 FSNQIKTFLL 126
>gi|291533367|emb|CBL06480.1| Type IV leader peptidase family [Megamonas hypermegale ART12/1]
Length = 135
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
LI L A D + I N+ + + ++ + +D E I LL+ LI+F +
Sbjct: 9 LIVCMYLGKIAWVDFKTLKIKNKSLLYLGLILVVRLMIFNIDLEKIIYALLINLIIFCVI 68
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ F+ +MG GD+KL A+W + ++ + I GGI++++ +
Sbjct: 69 Y-FYPKQLMGAGDLKLALVLALWCNYPQCIVAI-YVSFIFGGIVAIYFYLRNINKVSKKK 126
Query: 133 FGMFVP 138
+
Sbjct: 127 RYLLHR 132
>gi|219882762|ref|YP_002477926.1| peptidase A24A prepilin type IV [Arthrobacter chlorophenolicus A6]
gi|219861768|gb|ACL42109.1| peptidase A24A prepilin type IV [Arthrobacter chlorophenolicus A6]
Length = 225
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 19/161 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--- 63
+ + + + LVF A+ D + +PN + + M +F L + + + L
Sbjct: 65 LVAGMISLLTAALVFLAVIDWKTHRLPNAIVLPMYPAFGLAVAVGAVTGSITVTAALTAA 124
Query: 64 --VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ ++ F +G GDVKL + G + + L + + + + L
Sbjct: 125 ISMAAAFAVLWLVAFFTGGLGFGDVKLGGVLGLVCGLESGYAAALGALLLPMMLGGLVAL 184
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + K + +G + G L+
Sbjct: 185 --------------PLMFAGRRKQEFAFGPYMVAGALLILL 211
>gi|33862806|ref|NP_894366.1| putative type 4 prepilin peptidase [Prochlorococcus marinus str.
MIT 9313]
gi|33634722|emb|CAE20708.1| putative type 4 prepilin peptidase [Prochlorococcus marinus str.
MIT 9313]
Length = 270
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 36/159 (22%), Gaps = 29/159 (18%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI---- 80
DL +P + L L + L+ + A
Sbjct: 120 IDLDHMWLPEPLCRAGLLLGLAFTATAAVSLGWSKGSTLLLDHLLAAAAALIAMEGLSFL 179
Query: 81 ---------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+G GD KL W G ++ + + + L +
Sbjct: 180 AKKLIGQPALGLGDAKLAAMAGAWLGLNGVAMAMTLAIISGAAVGLIGRLAGQ------- 232
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ P+G I+ G + +
Sbjct: 233 ---------LQPRQPFPFGPFIAFGVWGVWLCGSDWWWQ 262
>gi|327541060|gb|EGF27611.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Rhodopirellula baltica WH47]
Length = 488
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 46 LTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ + +A+ IV ++C MG GDV L+ GW S L+F
Sbjct: 340 IGWMCMMTSLTGLAVGGGTIWIVRLVCGWAVQMEAMGFGDVTLMAMIGAVIGWQGSILTF 399
Query: 106 LFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
I+ V + R PYG + +G L+
Sbjct: 400 FLSPIAGLLIVMVVFVINRDPRT-------------------PYGPYLCVGTLLV 435
>gi|91228620|ref|ZP_01262537.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio alginolyticus 12G01]
gi|91187803|gb|EAS74118.1| type IV prepilin-like proteins leader peptide processing enzyme
[Vibrio alginolyticus 12G01]
Length = 205
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
F+ L F L+ A DL + ++P+++++ + + + A + + + + +
Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWAGIALALVEISPVTLQDSVIGAIA 187
>gi|307571131|emb|CAR84310.1| type IV leader peptidase / N-methyltransferase [Listeria
monocytogenes L99]
Length = 211
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V+ I + L F ++D+F +PN + IV + ++ AFL ++ F
Sbjct: 74 VYCIIYYFLAFFFITDIFYMYVPNSILIVFSCALIILAFLYNQPLIDFIYSSILS-CFFY 132
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F +G GD+K+L + + G+ + F + + IL +L R+ N
Sbjct: 133 LLFFIIFRKGIGLGDIKILIILSSFLGFKTGYYIFFLAIILGTIILFTALLLKRVKKNKQ 192
Query: 131 PIFGMFVPKSF 141
F ++ SF
Sbjct: 193 VPFVPYIYASF 203
>gi|300858563|ref|YP_003783546.1| hypothetical protein cpfrc_01146 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686017|gb|ADK28939.1| putative membrane protein [Corynebacterium pseudotuberculosis
FRC41]
gi|302206275|gb|ADL10617.1| Putative membrane protein [Corynebacterium pseudotuberculosis C231]
gi|308276517|gb|ADO26416.1| Type II secretory pathway, prepilin signal peptidase PulO-like
peptidase [Corynebacterium pseudotuberculosis I19]
Length = 176
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 10/165 (6%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
AV LI DL+ IP+ ++I ++ ++ + + ++ G
Sbjct: 15 EIAVALIILVWAGVLCFQDLWQRTIPDILTIPVI-VGIVAGSVGAGQLSWLLDGMIWGGT 73
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
F++ ++GGGD+KL T + + + ++ +
Sbjct: 74 YFLLGIIL--QGVIGGGDIKLALITGTSAAMHSPLAVVYAMIAAQLVTLCAGTMMYFYEK 131
Query: 126 ITNHIPIFGMFVPKSFLMKN-----KIPYGIAISMGGLISYPDSY 165
+ + +IP+G A+ + +SY +
Sbjct: 132 TQGILARREKKKSHADGEHAQRHIIRIPHGPAMLLSTALSYVVTP 176
>gi|320527729|ref|ZP_08028899.1| peptidase, A24 family protein [Solobacterium moorei F0204]
gi|320131894|gb|EFW24454.1| peptidase, A24 family protein [Solobacterium moorei F0204]
Length = 158
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM----DYELIALHLLVGLIV 68
++ L D IPN + I M+ F++ A ++ + + + + G +
Sbjct: 18 VLLFSLLWCVCYIDYLIMEIPNEIHIGMIILFIIHACMINEINIQPWIRMLVMFVCGYFI 77
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
FI+C F +GGGD+KLL+ +++ + ++ +
Sbjct: 78 FILCEKLFHKECIGGGDLKLLSCMSLFLSFQKIWIVLSIACILA---------------- 121
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ F KN I +G +S+ L+ +
Sbjct: 122 -------ILWMIFHQKNCIAFGPFLSVSFLLVF 147
>gi|317050790|ref|YP_004111906.1| Prepilin peptidase [Desulfurispirillum indicum S5]
gi|316945874|gb|ADU65350.1| Prepilin peptidase [Desulfurispirillum indicum S5]
Length = 255
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 18/133 (13%)
Query: 31 MIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC---FFAFNIMGGGDVK 87
+IP+ S+ L + L A G +A L G I+ + +G GDVK
Sbjct: 133 IIPDFFSVGGLVAGLALAIWFGHFAASLAGALAGGGILLAVYLYYRYVRQIEALGLGDVK 192
Query: 88 LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
+L + G T + F++ R SF ++ KI
Sbjct: 193 MLAMIGAFVGVTGVLYTLFLASLTGLAAAVFFMIYHR---------------SFSLQMKI 237
Query: 148 PYGIAISMGGLIS 160
P+G +++G L+
Sbjct: 238 PFGPFLALGALLV 250
>gi|163745838|ref|ZP_02153197.1| hypothetical protein OIHEL45_09638 [Oceanibulbus indolifex HEL-45]
gi|161380583|gb|EDQ04993.1| hypothetical protein OIHEL45_09638 [Oceanibulbus indolifex HEL-45]
Length = 164
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 5/154 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M S M ++ A +D+ I N+ +++ F++ L + +E
Sbjct: 1 MAISAMAALWFLPFVLPICLYVAFTDMKQMRITNQAVLLLTAIFVVLGLFL-LPFETYLW 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
LL +IV + A +MG GD K + A + + + L
Sbjct: 60 RLLSLVIVLGVGIVLNAAGVMGAGDAKFAAAAAP----FIALGDLRLLMMLFMATLLAAA 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
T R + +S+ K P G+A+
Sbjct: 116 TTHRGVKYTPLRRLAPDWQSWQETKKFPMGLALG 149
>gi|229043144|ref|ZP_04190869.1| Peptidase A24A domain protein [Bacillus cereus AH676]
gi|228726203|gb|EEL77435.1| Peptidase A24A domain protein [Bacillus cereus AH676]
Length = 219
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 34/96 (35%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
++D +IP+ + I +L + + + ++ + + + C +GG
Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 181
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
GD+KLL+ G F+ +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFSGLV 217
>gi|190149867|ref|YP_001968392.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|189914998|gb|ACE61250.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
Length = 142
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 20/158 (12%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ S + I L+ +DL +I NRV + +L + ++L+ L
Sbjct: 2 TLFISTLIAIMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLMYGTL-----SWLP 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
++ +I F F N +G GDVKLLT + + ++ + L R
Sbjct: 57 AVLCLVIGFVLFLLNAIGAGDVKLLTVLMLAIPSPLAIFFLFLTACSGLLLIIIGWLFYR 116
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +PYGIAIS G L +
Sbjct: 117 KT---------------IREKGLPYGIAISTGFLTTLL 139
>gi|238782883|ref|ZP_04626912.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC
43970]
gi|238716306|gb|EEQ08289.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC
43970]
Length = 140
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ + + L+ SD+ +I NR + + + L F ++ + +++
Sbjct: 3 IINFLLTSLLMLQLLLICYSDIRHRIISNRFIMTIAINTLALGF-----FQYHRVSIIIP 57
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L + + F F ++GGGDVKL+T + S L+ + G ++ + +L R
Sbjct: 58 LFALVTGYILFNFKLIGGGDVKLITVLLLALTAEQSLNFILYTAIMGGVVMIIGMLINR- 116
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + +PY +AI+ G L+S
Sbjct: 117 --------------ADIQQRGVPYAVAITGGFLLSLF 139
>gi|167772248|ref|ZP_02444301.1| hypothetical protein ANACOL_03623 [Anaerotruncus colihominis DSM
17241]
gi|167665351|gb|EDS09481.1| hypothetical protein ANACOL_03623 [Anaerotruncus colihominis DSM
17241]
Length = 139
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 17/136 (12%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D +IPN + ++ + L++ + V + ++ MGGGD
Sbjct: 17 DCRKRVIPNSLCLLTAAAGLISFSPAQL--------FGVLAALPLLIAALIQPECMGGGD 68
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
+KL + G+ F + + + L ++ +
Sbjct: 69 IKLTAAAGFVLGFWRGFWGLALGLLLAVLYFCIAGLFHKIRRRPPA---------LTGRT 119
Query: 146 KIPYGIAISMGGLISY 161
+P+G +S+G Y
Sbjct: 120 PLPFGPFLSIGFAALY 135
>gi|225871862|ref|YP_002753316.1| prepilin peptidase [Acidobacterium capsulatum ATCC 51196]
gi|225793488|gb|ACO33578.1| prepilin peptidase [Acidobacterium capsulatum ATCC 51196]
Length = 264
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 28/162 (17%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTA------------FLLGMDYELIALHLLVGLIVFI 70
A D + +P+ ++ + L+ G+ L + L+V
Sbjct: 114 AAMDAETLTLPDAFTMPGIVLGLVYHAVMPASGVKERLLETGVAALWGLLFAFLLLLVRW 173
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F +G GD KL+ A+W + + V + ++L
Sbjct: 174 VYFLLRQQEGLGLGDAKLMAMIAIWLSPALTAEALFLGVVAAAIFGAAWLLLHPREGMRA 233
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS-YLFKVAL 171
+P G + L+ L K L
Sbjct: 234 M---------------LPLGTFLCAAALLVLFKGQPLLKWYL 260
>gi|260892922|ref|YP_003239019.1| peptidase A24A prepilin type IV [Ammonifex degensii KC4]
gi|260865063|gb|ACX52169.1| peptidase A24A prepilin type IV [Ammonifex degensii KC4]
Length = 159
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 5/153 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ DL IPN + + L L G + + L L+ +
Sbjct: 6 LLVLAVAAGTIYLDLRWRRIPNWLLLPALLLALALRGWEG-GWPAVWAGLQGWLVGIGLL 64
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI----LTVRMITN 128
+ +GGGDVKLL G + +FL + G + + L +
Sbjct: 65 LLPYLRRGVGGGDVKLLGVLGACGGPLFALHTFLLGAVLGGLVSLYLLVRSSLLRPALRV 124
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
F + PYG+ ++GG+++
Sbjct: 125 VWWEFFLPGSLPLSSGLFFPYGVCFALGGVLAL 157
>gi|146276353|ref|YP_001166512.1| hypothetical protein Rsph17025_0297 [Rhodobacter sphaeroides ATCC
17025]
gi|145554594|gb|ABP69207.1| hypothetical protein Rsph17025_0297 [Rhodobacter sphaeroides ATCC
17025]
Length = 163
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 5/162 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M S ++ A SD+ IPN+ + + FL+ + + +E
Sbjct: 1 MATSPTAALWFLPFVVPIALWVAWSDMKFMKIPNKAVMALALVFLVVGPMA-LPFEDWLW 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L L+V +I F ++G GD K + A + + +L L
Sbjct: 60 RGLHLLVVLVIGFLMNLGRLVGAGDAKFAAAMAP----FFALGDLRLAIGLLAASLLGAF 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ R + P + P G+A++ ++
Sbjct: 116 ASHRGLGLVPPFRSATAEWESWRRRDFPMGLALAGMLILYLL 157
>gi|114321314|ref|YP_742997.1| peptidase A24A, prepilin type IV [Alkalilimnicola ehrlichii MLHE-1]
gi|114227708|gb|ABI57507.1| peptidase A24A, prepilin type IV [Alkalilimnicola ehrlichii MLHE-1]
Length = 166
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 6/151 (3%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAF---LLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
D IPN +++ + L A + I ++ FA
Sbjct: 16 YWDARHRRIPNLLTLPAALAGLAYAVVTQTAALGELPWGAVAAGAAIALVLTLPGFALGK 75
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT---NHIPIFGMFV 137
+GGGDVKLL + + G SF+ + G+ IL R+ P+
Sbjct: 76 LGGGDVKLLLAIGLLGGHPAVLSSFVVAAFTVTGLFLALILATRLAPWPGLPGPLRCSLQ 135
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+ ++P+G+ + G L +
Sbjct: 136 RLPGPREARLPFGVGLCAGLLGYIVWLTWLQ 166
>gi|284048378|ref|YP_003398717.1| peptidase A24A prepilin type IV [Acidaminococcus fermentans DSM
20731]
gi|283952599|gb|ADB47402.1| peptidase A24A prepilin type IV [Acidaminococcus fermentans DSM
20731]
Length = 211
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 3/129 (2%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ L+ L++ +D + + + + L+ L L G +V
Sbjct: 72 LVLMLVFTAFLLWMTATDFEQYCLFDTMMLPFALGALVMLARYPDMLVSHLLAGLAGGVV 131
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F+ + +GGGD+KLL + +W G + +LGG ++ +L +
Sbjct: 132 FLAV-GLLSRGALGGGDIKLLAALGLWMGPR--LVFVAAAGTVLGGAAALVLLLTGQKSR 188
Query: 129 HIPIFGMFV 137
Sbjct: 189 KSAFAYGPY 197
>gi|238759120|ref|ZP_04620289.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236]
gi|238702668|gb|EEP95216.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236]
Length = 130
Score = 45.2 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ F + +D+ +I N + I + + + F + +++ L +I +
Sbjct: 1 MLVFQFLLICYTDIRYRVISNGIIITIALNSIGLGFAVNNTVN-----VIIPLFSLLIGY 55
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
F ++GGGDVKL+T + T S L+ + G ++ + + +
Sbjct: 56 IIFHLKLIGGGDVKLITVLLLALTATQSLDFILYTAIMGGAVMIIGLFVNKK-------- 107
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + +PY +AIS+G L+
Sbjct: 108 -------DIQQRGVPYAVAISLGFLLV 127
>gi|255281817|ref|ZP_05346372.1| putative membrane protein [Bryantella formatexigens DSM 14469]
gi|255267490|gb|EET60695.1| putative membrane protein [Bryantella formatexigens DSM 14469]
Length = 167
Score = 45.2 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 1/130 (0%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
A L D++ IPN + + + + + L+ ++ F
Sbjct: 11 AAAVLCDVYQRKIPNTLITAGMITGAAYQWSAKGP-PGLLAFAEGALLPLLVLGILHYFR 69
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
++G GD+KLL + +FG S G + ++ R++ + F ++
Sbjct: 70 MLGAGDIKLLMMSGGFFGAAGSLKCICLSFLAAGALSLAVLVKHRVLMRRLHYFVQYIIN 129
Query: 140 SFLMKNKIPY 149
PY
Sbjct: 130 YRQTGKWTPY 139
>gi|15601952|ref|NP_245024.1| HopD [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720297|gb|AAK02171.1| HopD [Pasteurella multocida subsp. multocida str. Pm70]
Length = 240
Score = 45.2 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 14/161 (8%), Positives = 39/161 (24%), Gaps = 24/161 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIALH 61
+ A+ D +I ++ + ++ A L +
Sbjct: 84 QGVFIASYVSIAICIAVIDWRYQLISVQLCYCLFWIGVVAAYVEVSPLHLEQSLQSALTG 143
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ + + ++G GD L+ + L + G + +
Sbjct: 144 FFAFYCLYHLSKGIYRKELLGKGDYWLMLGLGSMSHFAWLPLWLFLACVMGLGYVCGLRI 203
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ I ++P+ + L
Sbjct: 204 KGQKI------------------KQLPFAPFLIFSALCVIL 226
>gi|238062119|ref|ZP_04606828.1| peptidase A24A prepilin type IV [Micromonospora sp. ATCC 39149]
gi|237883930|gb|EEP72758.1| peptidase A24A prepilin type IV [Micromonospora sp. ATCC 39149]
Length = 307
Score = 45.2 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 40/149 (26%), Gaps = 19/149 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT------AFLLGMDYELIALHLL 63
A C V L D+ +P+R++ G L A + +
Sbjct: 159 AALAWWLCCAVPLVLIDVAVHRLPDRLTWPAAGGVLALYGVAAAASAGTDPWLRAVAAGV 218
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ F G GD KL GW + V L V
Sbjct: 219 GLALAFAATTLLLGRRGFGLGDAKLALGVGALLGWYGWP-------------VLVLGLLV 265
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
+ + + + + + +P+G
Sbjct: 266 TFTLSALTSLALLLARRVRWSSHLPFGPF 294
>gi|282865322|ref|ZP_06274374.1| peptidase A24A prepilin type IV [Streptomyces sp. ACTE]
gi|282559795|gb|EFB65345.1| peptidase A24A prepilin type IV [Streptomyces sp. ACTE]
Length = 267
Score = 45.2 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 24/154 (15%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL------GMDYELIALH 61
V+L V A+ D +P+ +++ + + L G + L
Sbjct: 115 ELVVWLAATPVAVLLAVIDRRVHRLPDPLTLPLAAALALLLGGAALLPGHGGSWTTALLG 174
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP--SFLSFLFFVAILGGILSVF 119
+++ F MG GDVKL + V GW L+ F + G +
Sbjct: 175 GATLGGFYLLLFLIN-PQGMGFGDVKLALALGVALGWYGWTILLAGGFAGFLFGAVYGAG 233
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
+L +R K IP+G +
Sbjct: 234 LLLLRRAG---------------RKTGIPFGPFM 252
>gi|227357854|ref|ZP_03842202.1| type IV prepilin family leader peptidase [Proteus mirabilis ATCC
29906]
gi|227161964|gb|EEI46982.1| type IV prepilin family leader peptidase [Proteus mirabilis ATCC
29906]
Length = 210
Score = 45.2 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALHLLVGLIVFIICFCFF 76
+ D +P+ ++ +L + + + L ++ + + +
Sbjct: 75 SFFDADYLQLPDNLTFWLLFFGITLNLTPYGVISSICSFYGCLVASLFFYSIYWLSYWIY 134
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
I+G GDVKL ++ W G F + I +
Sbjct: 135 QETILGLGDVKLFSAIGAWCGIELLPYILFFAALLGIVIYMLIW 178
>gi|159903369|ref|YP_001550713.1| Type II secretory pathway, prepilin signal peptidase PulO-like
peptidase [Prochlorococcus marinus str. MIT 9211]
gi|159888545|gb|ABX08759.1| Type II secretory pathway, prepilin signal peptidase PulO-like
peptidase [Prochlorococcus marinus str. MIT 9211]
Length = 267
Score = 45.2 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 55/174 (31%), Gaps = 26/174 (14%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD------ 54
+ + + + + L +L D++S +P + + ++ AF
Sbjct: 98 ININDVTYLLLGWCLVTVLFSLSLIDIYSLWLPESLLRLGGIFGIIHAFSYLYSYSNYYI 157
Query: 55 ----YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+ ++ + + +G GD KL+ +W G S+ + +
Sbjct: 158 VVDYLFASVMSYYFFEVIRLSARKILKKDALGDGDSKLIAMLGLWNGIIGSYFTIVL-AF 216
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ I ++ ++ + + P G I++ GL +
Sbjct: 217 VSASIYAIVAISFKQLKL---------------GQAYPLGPFIALSGLFVWIFG 255
>gi|301165493|emb|CBW25064.1| putative type IV prepilin signal peptidase [Bacteriovorax marinus
SJ]
Length = 256
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALH 61
+++ ++ L L D+ ++P+ ++I + SFL + L A+
Sbjct: 98 SIMYFFLYFGIFCALFCHFLIDVKHQILPDSINIYLGLSFLCISLLKNPPVFYLSGAAIG 157
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L +V + + +GGGD+KL + G + V +
Sbjct: 158 FLFPYLVTLAFYHLKGQQGLGGGDIKLFAVLGIILGPVGIINNIFLSCFFGALFSLVMMA 217
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIP 148
+M FG F+ + + P
Sbjct: 218 LGKMSRTTKLAFGPFIIIVAVFQVYFP 244
>gi|197103823|ref|YP_002129200.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1]
gi|196477243|gb|ACG76771.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1]
Length = 172
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
++ A+ D+ S IPN + + + G+F+ A G+ +A H +G+ ++ FA
Sbjct: 17 VIAGAVKDVASFTIPNWIPLALAGAFVPAALAAGLPPAALAAHAGLGVGALVLGMVLFAV 76
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+GGGD KL+ + +W GW P+ +FL I GG LS+ +L +R + +
Sbjct: 77 RAIGGGDGKLMAAAVLWLGW-PALPTFLLVTVIAGGALSLGLLALRAPALRVLVLSGPAW 135
Query: 139 --KSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ K +PYG+AI+ G L ++P S
Sbjct: 136 FVRLAEPKEGVPYGLAIAAGALAAFPLSPF 165
>gi|78777194|ref|YP_393509.1| peptidase A24A-like [Sulfurimonas denitrificans DSM 1251]
gi|78497734|gb|ABB44274.1| Peptidase A24A-like protein [Sulfurimonas denitrificans DSM 1251]
Length = 271
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 20/191 (10%), Positives = 51/191 (26%), Gaps = 44/191 (23%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ L+ +L DL M+P+ ++++ L + A+ L LL
Sbjct: 97 TLFITCSFLTLLALSLIDLRYKMVPDSLNLLALLFGIFGAWSLSGIVLNFQNALLFAGSF 156
Query: 69 FIICFCFFA--------------------------FNIMGGGDVKLLTSTAVWFGWTPSF 102
++ F MG GD+ + + G +
Sbjct: 157 TLLRFALSYILTSTAKREAKKTLTSWSKNYHTYPFIEAMGEGDIIVAATMGALLGVKLTL 216
Query: 103 LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
++ + ++ + + + ++P+ ++ I Y
Sbjct: 217 VAIFLSALLALPVMLFAL------------------RGSKEEQRVPFVPFLTAATFIVYI 258
Query: 163 DSYLFKVALMG 173
+
Sbjct: 259 YDSAIMRYIEA 269
>gi|304440370|ref|ZP_07400259.1| possible prepilin peptidase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371122|gb|EFM24739.1| possible prepilin peptidase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 236
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 17/143 (11%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+FLI A++DL I + ++ + + + +F
Sbjct: 99 IFLIIFSFCFLIAITDLKYMDIYDIDTMTLTILLINFRVTNNNFTFDAIKSMCFLAAIFY 158
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ +MG GD L + L + +LG ++++ ++ ++
Sbjct: 159 AIYKIT--GVMGSGDALLSIPLGIVSSGIIDALYNFTYTFLLGAVVAIVLILFKIK---- 212
Query: 131 PIFGMFVPKSFLMKNKIPYGIAI 153
K+ IP+G I
Sbjct: 213 -----------DRKDYIPFGPFI 224
>gi|307261007|ref|ZP_07542689.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
gi|306869309|gb|EFN01104.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
Length = 131
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L+ +DL +I NRV + +L + ++L+ L ++ +I F
Sbjct: 1 MVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLMYGTL-----SWLPAVLCLVIGFV 55
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F N++G GDVKLL + + + I+ + L R
Sbjct: 56 LFLLNVIGAGDVKLLAVLMLAVPSSFAIFFLFLTACSGLLIIIIGWLFYRQT-------- 107
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +PYGIAISMG L +
Sbjct: 108 -------IREKGLPYGIAISMGFLTTLL 128
>gi|254297714|ref|ZP_04965167.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
gi|157807942|gb|EDO85112.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
Length = 172
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ + L AL+DL + + ++ + A A H +G F +
Sbjct: 20 LVASWTLASLALADLRTRRLATFAVALVGALYAAQALAGAPGDGGFASHAALGAAAFALG 79
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + GGDVKL +W G ++ + +V I R
Sbjct: 80 AAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRAPRVLAW- 138
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F +PYG+A++ GGL++
Sbjct: 139 --------FAPARGVPYGVALAAGGLLA 158
>gi|149175452|ref|ZP_01854073.1| hypothetical protein PM8797T_18349 [Planctomyces maris DSM 8797]
gi|148845720|gb|EDL60062.1| hypothetical protein PM8797T_18349 [Planctomyces maris DSM 8797]
Length = 188
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + V AA++D + I N +++ ++ + +E + L L F
Sbjct: 12 VMAISVGIFTVIAAITDYKARKIYNVLTVPFFVLGIIYQL-VFNGWEGLMYGGLGFLAGF 70
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
F + GDVK++ + ++W G+ + + +
Sbjct: 71 GSFFLIWIVGSGAAGDVKMMGALSIWLGFKATIAVMIIGTLFV 113
>gi|87303482|ref|ZP_01086265.1| putative type 4 prepilin peptidase [Synechococcus sp. WH 5701]
gi|87281895|gb|EAQ73858.1| putative type 4 prepilin peptidase [Synechococcus sp. WH 5701]
Length = 282
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 41/158 (25%), Gaps = 29/158 (18%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL-------------IVFIIC 72
D +P + L L G+ L+ + +
Sbjct: 132 DCDHLWLPEPLCRWGLLLGLAVTLAAGLSQSGEVARTLLFNHLLAACLGLLAFEGLSALA 191
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+G GD KL W G T L+ V + + L+ R
Sbjct: 192 ERLMGKPALGLGDAKLTALLGAWLGLTGMGLAVTLAVFSGAVVGLLGRLSGR-------- 243
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
P+G +++GGL + + +
Sbjct: 244 --------LQPAQPFPFGPFLALGGLAVWLAGEGWWLQ 273
>gi|226325175|ref|ZP_03800693.1| hypothetical protein COPCOM_02967 [Coprococcus comes ATCC 27758]
gi|225206523|gb|EEG88877.1| hypothetical protein COPCOM_02967 [Coprococcus comes ATCC 27758]
Length = 343
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVGLIVFIICF 73
A+ D S ++P +SI +LTAF G L + +F I
Sbjct: 202 ILVTAVGAMCDQRSRVLPFGLSIATYPLAVLTAFGHGGVSGLIGNLLCGVGIYAIFAITN 261
Query: 74 CFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
F + +G GD +L+ + A G+ + G + + +L
Sbjct: 262 HLFRITGGADAVGAGDRRLVPAIATACGFHGTVY--------GMGAMCIAMLAN------ 307
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAI 153
+ K +K+++P G +
Sbjct: 308 --YIPRYRAKEITLKSRVPMGPFL 329
>gi|153956474|ref|YP_001397239.1| hypothetical protein CKL_3891 [Clostridium kluyveri DSM 555]
gi|219856778|ref|YP_002473900.1| hypothetical protein CKR_3435 [Clostridium kluyveri NBRC 12016]
gi|146349332|gb|EDK35868.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219570502|dbj|BAH08486.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 139
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 22/149 (14%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
L A+++DL ++PN + V+ + + LIAL L+ + F
Sbjct: 12 FFIALLCAASVTDLTKRIVPNWICAVIAVLSIPGFAPEKLPGILIALPFLLAAVFF---- 67
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
MGGGD+KL+ + + G L+ + + +L + ++ + R
Sbjct: 68 -----GGMGGGDIKLMAACGLVLGLPKGLLAAMAGLVLLLIYVVIYRIVCRAQRR----- 117
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYP 162
K P +S G L++Y
Sbjct: 118 --------EAKKAFPLAPFLSAGCLLAYF 138
>gi|218708105|ref|YP_002415726.1| putative prepilin leader peptidase [Vibrio splendidus LGP32]
gi|218321124|emb|CAV17074.1| putative prepilin leader peptidase [Vibrio splendidus LGP32]
Length = 145
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
++ + D+ +IPN V + + + IV +
Sbjct: 8 LILLATMAAIVSYQDIRYRIIPNGVVVAVALLGVFYICQ-----TEKFELFYNFFIVLAV 62
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F FN++ GD KLL + ++ L+ + G + + + N
Sbjct: 63 GAVLFYFNVIAAGDSKLLAAFSLMVSPNMMLLAVNVILFAGGTLAITQWVLGKTTGNSEW 122
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLI 159
I +PYG+ I +G L+
Sbjct: 123 IN-----------RGVPYGVPICLGSLL 139
>gi|219558555|ref|ZP_03537631.1| shikimate 5-dehydrogenase [Mycobacterium tuberculosis T17]
Length = 412
Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 2/130 (1%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
+ + D+ +PN +++ G LL A L G +A + + ++
Sbjct: 280 VAWMGVLCVCDVRQRRLPNWLTLPGAGVILLFAGLAGRGVPALAGAAALAGVYLLVHLAL 339
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
A MG GDVKL G + FL +A ++ +P
Sbjct: 340 PA--AMGAGDVKLAIGLGGLTGCFGVEVWFLAALAAPLLTAVCGVMVTPWGVRTLPHGPS 397
Query: 136 FVPKSFLMKN 145
S
Sbjct: 398 MCVASLGAVG 407
>gi|150019031|ref|YP_001311285.1| peptidase A24A domain-containing protein [Clostridium beijerinckii
NCIMB 8052]
gi|149905496|gb|ABR36329.1| peptidase A24A domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 250
Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 18/160 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL--HLLV 64
V + + I L+ + D + + +I +L L + Y+ L L
Sbjct: 95 VITIKYCILVSLLIVISAIDFDTQFVFTSTTIFGGIVGVLFILLQYVLYKNNVLDLILGG 154
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
L II F MG GD+++ V+ G L + + G I + +
Sbjct: 155 ILGAIIIGLIVFLTRGMGEGDIEIAAVCGVFLGVKGILLGLFLAIVLGGIIGIIVLALKL 214
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+G I++G LIS
Sbjct: 215 KKAKEKIA----------------FGPFIAIGSLISMIYG 238
>gi|260574608|ref|ZP_05842611.1| peptidase A24A prepilin type IV [Rhodobacter sp. SW2]
gi|259023025|gb|EEW26318.1| peptidase A24A prepilin type IV [Rhodobacter sp. SW2]
Length = 166
Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 8/153 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL----TAFLLGMDYELIALHL 62
V + V+ A SD+ IPN+ + + +L+ + +
Sbjct: 5 VALTLLPFVLPIAVWVAWSDMKFMKIPNKAVLALAAVYLVVGGGLVAFGALGLKTWGWGW 64
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+G IV + F ++G GD K + A +F F + + L +
Sbjct: 65 ALGAIVLGVGFVVTILKMVGAGDAKFAAAMAPFF----VGGDLRFVLLLFSACLIAAFVG 120
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
R + + M K P G+A+S
Sbjct: 121 HRAMRALPAVRRMTPDWESWTHAKFPMGLALSA 153
>gi|126455283|ref|YP_001066148.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
gi|217421473|ref|ZP_03452977.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
gi|237812163|ref|YP_002896614.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
MSHR346]
gi|126228925|gb|ABN92465.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
gi|217395215|gb|EEC35233.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
gi|237503315|gb|ACQ95633.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
MSHR346]
Length = 172
Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ + L AL+DL + + ++ + A + A H +G F +
Sbjct: 20 LVASWTLASLALADLRTRRLATFAVALVGALYAALALVGAPGDGGFASHAALGAAAFALG 79
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + GGDVKL +W G ++ + +V I R
Sbjct: 80 AAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRAPRVLAW- 138
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F +PYG+A++ GGL++
Sbjct: 139 --------FAPARGVPYGVALAAGGLLA 158
>gi|326205020|ref|ZP_08194870.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
2782]
gi|325984825|gb|EGD45671.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
2782]
Length = 167
Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++I L+F+ LSD+ ++ I N ++ + + + + ++
Sbjct: 2 IKYIILFIVLLFSVLSDIRTSKIRNIYTVSAIIAGIGINTY-FSGIYGFKESIKGSIVPV 60
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+I FF ++G GD+KL +S G ++ + + G + R +
Sbjct: 61 LILGVFFCARLIGAGDIKLYSSVGAVLGIDFVIMAAAYSFLVCGLYSLAILCIKRRV 117
>gi|261346258|ref|ZP_05973902.1| leader peptidase PilD [Providencia rustigianii DSM 4541]
gi|282565566|gb|EFB71101.1| leader peptidase PilD [Providencia rustigianii DSM 4541]
Length = 214
Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 21/161 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + + D + +PN ++ +L LL + + A + L+ V
Sbjct: 66 ILMLFLFLNLALPLFFIDFKTGYLPNILTYSLLWVGLLYQGISLNGNLISAFYALILSYV 125
Query: 69 FIICFC-----FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
++ MG GD KL+ + + W G ++ +
Sbjct: 126 LLVVMTTIMEKIRKRPQMGRGDFKLIAACSAWLGLLDLPYFLGLSASLGIVHFIALCIKT 185
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + + IP+G AI ++ S
Sbjct: 186 KG----------------TLVSSIPFGPAIICSAMVWLFVS 210
>gi|254510845|ref|ZP_05122912.1| peptidase A24A, prepilin type IV [Rhodobacteraceae bacterium KLH11]
gi|221534556|gb|EEE37544.1| peptidase A24A, prepilin type IV [Rhodobacteraceae bacterium KLH11]
Length = 181
Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 21/178 (11%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--- 57
M + + A +D+ I N + + F++ + ++
Sbjct: 1 MVIPAAAAAWFLPFVLPICFYVAFTDMREMRIKNHAVVALALVFVVVGLVALPPWQAPWV 60
Query: 58 -------------IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104
L ++V I+ A +MG GD K + A +
Sbjct: 61 PGNIGPIFLTLPVYGWQLFHMIVVLIVGIVLNAAGVMGAGDAKFCAAAAAFI----WLGD 116
Query: 105 FLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + IL + R+ +S+ + P G+ ++ G L Y
Sbjct: 117 LMILMIILASTMLGAFFAHRLAKYSGLRQIAPHWESWDRGKQFPMGLTLA-GSLAIYL 173
>gi|15602719|ref|NP_245791.1| hypothetical protein PM0854 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721163|gb|AAK02938.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 143
Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
S +V ++ I L+ + +D+ S +I N++ ++L + A+ + + L
Sbjct: 2 SDIVIFSLHCITMILLIILSWTDIKSRIISNKIVFLLLLVMVPLAW-----IQHKQIFFL 56
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
L+ +I F F F +MG GD+KL++ + + FLF ++ + L
Sbjct: 57 PALLTLVIGFLLFTFGVMGAGDIKLMSVLMLTIPHSQIIYFFLFTAFSGLFLIIIGFLFF 116
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
R + ++ +PYG+AIS G +
Sbjct: 117 R---------------HSIRQHGLPYGVAISCGFI 136
>gi|256824640|ref|YP_003148600.1| prepilin signal peptidase PulO-like peptidase [Kytococcus
sedentarius DSM 20547]
gi|256688033|gb|ACV05835.1| prepilin signal peptidase PulO-like peptidase [Kytococcus
sedentarius DSM 20547]
Length = 253
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 26/154 (16%)
Query: 20 VFAALSDLFSAMIPNRVSIV------MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
A+ DL +P+R+++ ++ + A D L + + +
Sbjct: 111 ATASAIDLDVHRLPDRLTLPAAATCLLVLVGVAAADGAWDDLRRAVLAAMTLGVGYCTLS 170
Query: 74 CFFAFNIMGGGDVKLLTSTAV---WFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
A +G GD KL S + W GW P L+ A+ + V ++ R
Sbjct: 171 FLTA-GGIGLGDAKLALSIGLFTGWLGWGPFLLAAWGAFAVGALVAVVLMVAGR------ 223
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++P+G ++ ++ +
Sbjct: 224 ----------ATRATQLPFGPSMVCAAWATWVLT 247
>gi|167031636|ref|YP_001666867.1| peptidase A24A prepilin type IV [Pseudomonas putida GB-1]
gi|166858124|gb|ABY96531.1| peptidase A24A prepilin type IV [Pseudomonas putida GB-1]
Length = 156
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L + D+ I N +++ + L+ F G + + ++
Sbjct: 4 IVLLLWLALCSEQDVRQRQISNLLTLGVATCALIWLFATGHSWIGADASDAGWALAIVML 63
Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ G DVKL+ + A+ +F I G+ + L R +
Sbjct: 64 LTLPGYMLGRFGADDVKLMGALALATSPQYVLGTF-----IGAGVSVLVWLLTRRRLWTL 118
Query: 131 PIF 133
Sbjct: 119 LNP 121
>gi|296110011|ref|YP_003616960.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME]
gi|295434825|gb|ADG13996.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME]
Length = 331
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++I F L+ A+++D+ +IP++ I M L + ++ I + ++
Sbjct: 6 IAYIINFFILILASITDIKEKIIPHKYVIAMFLINLPIGYY-FFGFDAIIGMISTFILCL 64
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFG-----WTPSFLSFLFFVAILGGILSVFILTVR 124
I+ MGGGDVKL T+ A F + P + ++ +++L + R
Sbjct: 65 ILSI------GMGGGDVKLFTALAPIFSYDLFYFLPKPILYMIAISMLLVAIYPLFKIFR 118
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
I ++ + I Y + I G ++ Y
Sbjct: 119 RYYKEILYSSFYLATVMGILYYIIYKLNIPYGTILIYLY 157
>gi|303239392|ref|ZP_07325920.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
gi|302593178|gb|EFL62898.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
Length = 208
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 2/130 (1%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLI 67
S ++I L A++ D+ + +IPN++ ++ L ++ +L V
Sbjct: 68 SLSYMILTAILFAASIKDIQNRIIPNKLIVLGLILGVILNCLFFSFGRIADSLTTFVLAG 127
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
++ F + +G GD KL+ T + G + S + + + VF + + +
Sbjct: 128 GILLSISFVSKGGLGIGDAKLIACTGMLLGAQKTI-SVMIISFLASALFGVFSVLFKKLN 186
Query: 128 NHIPIFGMFV 137
+
Sbjct: 187 RKSAMAFAPF 196
>gi|45358118|ref|NP_987675.1| preflagellin peptidase [Methanococcus maripaludis S2]
gi|18042217|gb|AAL57886.1|AF455758_1 flagella related protein FlaK [Methanococcus maripaludis]
gi|44920875|emb|CAF30111.1| Preflagellin peptidase [Methanococcus maripaludis S2]
Length = 230
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGLIV 68
++I L+ A++ D S I + + IV+ +L A + ++ + +I
Sbjct: 4 YIIGVIGLLLASVQDFRSREIEDYIWIVLAVFGILFAIYSAITLSNYSILINSISGFVIC 63
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
FI+ + F + +GGGD K+L + +
Sbjct: 64 FILGYMMF-LSGIGGGDGKILIGLGALVPKFQMPIYTSLGTLL 105
>gi|254457982|ref|ZP_05071409.1| type IV prepilin peptidase [Campylobacterales bacterium GD 1]
gi|207085375|gb|EDZ62660.1| type IV prepilin peptidase [Campylobacterales bacterium GD 1]
Length = 271
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 16/191 (8%), Positives = 50/191 (26%), Gaps = 44/191 (23%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + + L+ ++ D M+P+ ++++ + + A+ L + LL
Sbjct: 97 ALLIALSFLMLLALSVIDFRYKMVPDSLNLLAMFFAIFGAWNLSGVFTNFQNALLFAGGF 156
Query: 69 FIICFCFFA--------------------------FNIMGGGDVKLLTSTAVWFGWTPSF 102
++ F MG GD+ + + G +
Sbjct: 157 TLLRFVLSYYLTSSVYRAGLKTKTSWNRFYDRTPFVEAMGEGDIMVAATMGALLGLKLTL 216
Query: 103 LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
++ + + ++P+ +++ + Y
Sbjct: 217 VAIFLSAI------------------LALPVMLLLLNKSAEHQRVPFVPFLALATFMVYI 258
Query: 163 DSYLFKVALMG 173
+
Sbjct: 259 YDSPILAYIEA 269
>gi|32472887|ref|NP_865881.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Rhodopirellula baltica SH 1]
gi|32444124|emb|CAD73566.1| probable type 4 prepilin-like proteins leader peptide processing
enzyme [Rhodopirellula baltica SH 1]
Length = 488
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 46 LTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ + +A+ IV ++C MG GDV L+ GW S L+F
Sbjct: 340 IGWMGMMTSLTGLAVGGGTIWIVRLVCGWAVQMEAMGFGDVTLMAMIGAVIGWQGSILTF 399
Query: 106 LFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
I+ V + R PYG + +G L+
Sbjct: 400 FLSPIAGLLIVMVVFVINRDPRT-------------------PYGPYLCVGTLLV 435
>gi|87124350|ref|ZP_01080199.1| putative type 4 prepilin peptidase [Synechococcus sp. RS9917]
gi|86167922|gb|EAQ69180.1| putative type 4 prepilin peptidase [Synechococcus sp. RS9917]
Length = 266
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 38/152 (25%), Gaps = 22/152 (14%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL------IVFIICFCFFAF 78
D +P + + L L + + + +
Sbjct: 122 IDCDHLWLPEPLCRSGVILGFLATLALTTPERWLNHLVAAAAALLVMEGLSALAERLLGQ 181
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+G GD KL W G + V I + ++ R
Sbjct: 182 PALGLGDAKLAALGGAWLGLAGITAAMALAVCSGAIIGLLGRISGR-------------- 227
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ P+G I++G + + L+
Sbjct: 228 --LGPRQPFPFGPFIALGIWLVWLTGPLWWWQ 257
>gi|159040459|ref|YP_001539712.1| peptidase A24A prepilin type IV [Salinispora arenicola CNS-205]
gi|157919294|gb|ABW00722.1| peptidase A24A prepilin type IV [Salinispora arenicola CNS-205]
Length = 253
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 34/137 (24%), Gaps = 19/137 (13%)
Query: 22 AALSDLFSAMIPNRVSIVMLGS------FLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
A D+ +P+R++I + L ++F
Sbjct: 117 LAFIDVSVHRLPDRLTIPAALGTWLLLGLAAALDAGYTPWLRATAAGLGLGLLFAASTIL 176
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
G GD KL + GW G V L + +
Sbjct: 177 LGRRGFGLGDAKLAVGVGLLLGWH-------------GLAFLVLGLLFAFTLAAVTALAL 223
Query: 136 FVPKSFLMKNKIPYGIA 152
+ + +P+G
Sbjct: 224 LATRRIRWSSHLPFGPF 240
>gi|294012331|ref|YP_003545791.1| type II secretory pathway prepilin signal peptidase PulO
[Sphingobium japonicum UT26S]
gi|292675661|dbj|BAI97179.1| type II secretory pathway prepilin signal peptidase PulO
[Sphingobium japonicum UT26S]
Length = 253
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 20/140 (14%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFFAF---- 78
+ D +P+ +++ + A+ L G + ++ +
Sbjct: 115 VLDRRHFWLPDALTLPLAFLGFTMGPWATEATMADRAIGALAGYLALLLIAFGYRRTRGR 174
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+ +G GD KLL + WFGW L ++ + + T R +
Sbjct: 175 DGLGLGDAKLLGALGAWFGWQALPFILLLAASVGLLSVVAVMATGRRV------------ 222
Query: 139 KSFLMKNKIPYGIAISMGGL 158
++P G +++ +
Sbjct: 223 ---DGTTRVPLGAFLAIAAV 239
>gi|119716638|ref|YP_923603.1| peptidase A24A, prepilin type IV [Nocardioides sp. JS614]
gi|119537299|gb|ABL81916.1| peptidase A24A, prepilin type IV [Nocardioides sp. JS614]
Length = 242
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 16/159 (10%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLLVGLIVFIICFCFF 76
V A+ DL + ++P V L + + A L G+ D + + L G++VF + F +
Sbjct: 95 VALAVVDLRTRLLPTVVVWPTLAATAVLAVLSGLLDDDQDALVRAGLGGVVVFALFFALW 154
Query: 77 AFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+ MG GDV+L + G+ + I GG L+ + +
Sbjct: 155 WIHPAGMGYGDVRLSAVLGLALGY---LGWAELAIGIYGGFLAFSV--------PGLLLA 203
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ +++ P+G + G L L+ G
Sbjct: 204 LLRRDRAILRAAYPFGPFLLAGALAGVVLGPLWTGLASG 242
>gi|315634802|ref|ZP_07890084.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Aggregatibacter segnis ATCC 33393]
gi|315476354|gb|EFU67104.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Aggregatibacter segnis ATCC 33393]
Length = 230
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 24/159 (15%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGLI 67
+ L +L D +I + +L L A+ + E ++
Sbjct: 88 LCLALYITILSAISLVDWHYRLISPTLCQALLALGLGAAYWQIGALSLEQSLQSAVLFGG 147
Query: 68 VFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
VF + ++ +G GD L + +FLF + G I + +
Sbjct: 148 VFYAIYHAAKGYYRQEALGRGDYWLALGLGAFM-PAQQLPAFLFLACLFGLIYTTYAKYR 206
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
N +P+G +S+ G++
Sbjct: 207 NRTLN-----------------AVPFGPFLSLSGIVCLL 228
>gi|319938042|ref|ZP_08012442.1| hypothetical protein HMPREF9488_03278 [Coprobacillus sp. 29_1]
gi|319806948|gb|EFW03587.1| hypothetical protein HMPREF9488_03278 [Coprobacillus sp. 29_1]
Length = 155
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 4/147 (2%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L A +D I N +++ + +L LL E L + + I+C
Sbjct: 10 FVLLSICAYTDTKFRKIYNWMTLPFIAIGILNTLLLYGPKEGFMNCLWL-IPALILCIIL 68
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
F + +GGGD KL+ S G + + L + +L R +
Sbjct: 69 FKLHQIGGGDAKLILSVGALMGLEYTLIILLISFILGWFYSIYQLLKKRNNKKGVLKGHQ 128
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +GI +GGL Y
Sbjct: 129 KIMIPLGSIMLVAFGI---VGGLQVYL 152
>gi|307256576|ref|ZP_07538357.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10
str. D13039]
gi|306864986|gb|EFM96888.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10
str. D13039]
Length = 131
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 20/148 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L+ +DL +I NRV + +L + ++L+ L ++ +I F
Sbjct: 1 MVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLMYGTL-----SWLPAVLCLVIGFV 55
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F N++G GDVKLL + + + I+ + L R
Sbjct: 56 LFLLNVIGAGDVKLLAVLMLAVPSSFAIFFLFLTACSGLLIIIIGWLFYRQT-------- 107
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +PYGIAIS G L +
Sbjct: 108 -------IREKGLPYGIAISTGFLTTLL 128
>gi|323525743|ref|YP_004227896.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
gi|323382745|gb|ADX54836.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
Length = 160
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 2/138 (1%)
Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF-CF 75
A+SD S I N + I L + L A L + + A G V ++ F
Sbjct: 2 LWCACVAISDYRSRRISNALVITGLIAAFLCALLDMGPFGVSAAQAAAGAAVGLVALLPF 61
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
FAF +MG DVK+ W G + + +++ G+ ++ +L +
Sbjct: 62 FAFGVMGAADVKVFAVLGAWCGM-HALIGLWAVASVVAGLHALCVLVATRTRVGALLARR 120
Query: 136 FVPKSFLMKNKIPYGIAI 153
+ P+ +
Sbjct: 121 APTFELAGRRATPFAACL 138
>gi|310830436|ref|YP_003965537.1| Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Paenibacillus polymyxa SC2]
gi|309249903|gb|ADO59469.1| Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Paenibacillus polymyxa SC2]
Length = 193
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 2/106 (1%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + L D +IPN + +L + + + L +
Sbjct: 55 LNMLLVCLAFSILTSTFFIDFKHQIIPNEYVLGLLILATVFIINNHKYWAVFVKGGLYFV 114
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
+VF I F +G GDVKL ++ G +
Sbjct: 115 LVFGIMFIVTKK--LGFGDVKLSIPLGMFLGSGLVLNYLIVTFFTA 158
>gi|307721206|ref|YP_003892346.1| peptidase A24A domain-containing protein [Sulfurimonas autotrophica
DSM 16294]
gi|306979299|gb|ADN09334.1| peptidase A24A domain protein [Sulfurimonas autotrophica DSM 16294]
Length = 272
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 17/181 (9%), Positives = 50/181 (27%), Gaps = 44/181 (24%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + L+ ++ D MIP+ ++++ + ++ A+ + + LL
Sbjct: 98 AFFIALSFLMLLALSVIDFRYKMIPDSLNLLAIFFAIMGAWSINGVIINLENALLFAGGF 157
Query: 69 FIICFCFFA--------------------------FNIMGGGDVKLLTSTAVWFGWTPSF 102
++ F MG GD+ + + G
Sbjct: 158 TLLRFALSYYLTSSVYKAGLKTKTSWNKHYDRTPFIEAMGEGDIMVAATMGALLGVKLGL 217
Query: 103 LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + ++ + + ++P+ +++ I Y
Sbjct: 218 FAIFLSALLALPVMLFVL------------------NKSKEEQRVPFVPFLALATFIVYI 259
Query: 163 D 163
Sbjct: 260 Y 260
>gi|260914314|ref|ZP_05920783.1| flp operon protein B [Pasteurella dagmatis ATCC 43325]
gi|260631415|gb|EEX49597.1| flp operon protein B [Pasteurella dagmatis ATCC 43325]
Length = 143
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 20/132 (15%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
+ +D+ +I N++ +++L L +++ + + ++ LI FII F F +G
Sbjct: 21 SYTDIKHRIISNKIVLILLLVILPLSWIKYGE-----IFVVPALISFIIGFILFNLKTVG 75
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GDVKL++ + F F + I G + +
Sbjct: 76 AGDVKLVSVLMLAIPQEQIMSFFFFTAC---------------SGLILIIIGWIFFRESI 120
Query: 143 MKNKIPYGIAIS 154
+KN +PYG+AIS
Sbjct: 121 LKNHLPYGVAIS 132
>gi|254390200|ref|ZP_05005419.1| hypothetical protein SSCG_02666 [Streptomyces clavuligerus ATCC
27064]
gi|197703906|gb|EDY49718.1| hypothetical protein SSCG_02666 [Streptomyces clavuligerus ATCC
27064]
Length = 270
Score = 44.5 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
AV+L V A+ D +P+R+++ + + + L
Sbjct: 116 ELAVWLALAPFAVLLAVVDRRVHRLPDRLTLPLAAAAAVLLGAAARLPGAAGSWSGALLG 175
Query: 68 VFIICFCFFAF-----NIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFI 120
++ + A MG GDVKL S V GW + F + G + + +
Sbjct: 176 GVVLGAAYLALFVIHPGGMGFGDVKLALSLGVVLGWYGWGTLFMGAFAGFLFGSLYGLAL 235
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ + + IP+G + G L L
Sbjct: 236 MALGRAG---------------RRTAIPFGPFMIGGALAGVLLGAL 266
>gi|187479018|ref|YP_787042.1| type 4 prepilin leader peptidase [Bordetella avium 197N]
gi|115423604|emb|CAJ50143.1| type 4 prepilin leader peptidase [Bordetella avium 197N]
Length = 168
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 6/113 (5%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH------ 61
+ +++ + D +PN + + L + A
Sbjct: 14 ENVWWMVLLAFNATVVVYDFRWRRVPNWLLSFAALAQLAWLAWHSISGAWPASGPSGWLD 73
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
+ ++ ++ F+ +MG GDVK L +W G+ P + + G
Sbjct: 74 AGLPFVIGLLFIVFWRLRLMGAGDVKYLAVLGLWLGFMPWLMVLMLASVPCGI 126
>gi|126729092|ref|ZP_01744906.1| hypothetical protein SSE37_22869 [Sagittula stellata E-37]
gi|126710082|gb|EBA09134.1| hypothetical protein SSE37_22869 [Sagittula stellata E-37]
Length = 167
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 7/173 (4%)
Query: 2 KESKMVFSAVFLIPPF-CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ +A FL ++ +D+ IPN + M F++ F+ M ++
Sbjct: 1 MSITVTEAAWFLPFVLPVCLYIMYTDMKGMRIPNHSVLAMFIIFVVVGFIA-MPFDAYLW 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ ++V + A +G GD K S A + F + + L
Sbjct: 60 RYVHLIVVLVAGIALNAGGAVGAGDAKWAASAA----PFIALGDLRFLMILFAANLLAAF 115
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ R+ +S+ +K P G+A+ G + Y LF G
Sbjct: 116 VAHRIAKFTPIRRLAPNWESWNAGSKFPMGLALG-GTMAIYLGLGLFYGQAAG 167
>gi|51893089|ref|YP_075780.1| type IV prepilin-like leader peptide processing enzyme
[Symbiobacterium thermophilum IAM 14863]
gi|51856778|dbj|BAD40936.1| type IV prepilin-like leader peptide processing enzyme
[Symbiobacterium thermophilum IAM 14863]
Length = 214
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 18/152 (11%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
DL +IPN + +V +L L D + L G F + + M
Sbjct: 79 FIDLQDHIIPNDLVLVGFAVWLPAMLLFPYDGKTWLSALGGGAAAFAFFYLLAVLVPDGM 138
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GDVKL ++ G ++ + + G +V + T R
Sbjct: 139 GMGDVKLALVMGLFLGAGWVAMALILAFLLGGLASAVLLATRR----------------V 182
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G ++ GGLI+ G
Sbjct: 183 GRRGHIPFGPFLAAGGLITILWGSQIWNWYAG 214
>gi|163783517|ref|ZP_02178508.1| type 4 prepilin peptidase [Hydrogenivirga sp. 128-5-R1-1]
gi|159881281|gb|EDP74794.1| type 4 prepilin peptidase [Hydrogenivirga sp. 128-5-R1-1]
Length = 173
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVG 65
V + V+ L+ +L DL ++P+ +++ + L + +++ + VG
Sbjct: 95 VEAFVYYAFFSALLVVSLIDLKFFILPDVITVPGIVLGLGVSLLRSDINFIQSLVGAAVG 154
Query: 66 LIVFIICFCFF 76
+ + + ++
Sbjct: 155 FSIPFLIYIYY 165
>gi|154488951|ref|ZP_02029800.1| hypothetical protein BIFADO_02260 [Bifidobacterium adolescentis
L2-32]
gi|154083088|gb|EDN82133.1| hypothetical protein BIFADO_02260 [Bifidobacterium adolescentis
L2-32]
Length = 274
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 22/156 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI-----ALHLLVG 65
V + + A DL +I N V + L + +L + +
Sbjct: 115 VLYVFACVSIVIAFIDLDHHLILNVVLLPTLIATVLLLAVASFGIGEWTRLGRGALCALI 174
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTV 123
L VF MG GD+KL + GW + F +GG +S+ +L
Sbjct: 175 LFVFYFVLSLIWKGGMGDGDIKLAFILGLLLGWLGWPQFIIGSFAAFFIGGAISLVLLAS 234
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + + IP+G ++ +G +
Sbjct: 235 KKV---------------DLHGGIPFGPSMLLGAWL 255
>gi|83859131|ref|ZP_00952652.1| prepilin peptidase [Oceanicaulis alexandrii HTCC2633]
gi|83852578|gb|EAP90431.1| prepilin peptidase [Oceanicaulis alexandrii HTCC2633]
Length = 162
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 58/146 (39%), Gaps = 18/146 (12%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
+ ++ D ++P+R+++ ++ ++ A +LG L AL +VG ++ +
Sbjct: 18 ITLSVIDARRFILPDRITLPLVAGGVVAAAVLGGTVWLHALGGIVGYSALVLIEKSYERA 77
Query: 80 ----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
+G GD KL + W G + + L F ++ + ++ +
Sbjct: 78 RGRPGLGRGDAKLFAAGGTWCG-ALALPAILLFSSLAALVFALTL-------------KY 123
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISY 161
K + I +G ++ G + +
Sbjct: 124 VFRKDVTGDSMIAFGPFLAFGIGLVW 149
>gi|238923490|ref|YP_002937006.1| hypothetical protein EUBREC_1110 [Eubacterium rectale ATCC 33656]
gi|238875165|gb|ACR74872.1| Hypothetical protein EUBREC_1110 [Eubacterium rectale ATCC 33656]
Length = 212
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 23/162 (14%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSF-------LLTAFLLGMDYELIALHLLV 64
+ + A D IPN I L + L+ + + + +L
Sbjct: 67 MIALLSIMASVAYVDFTELRIPNEYIITGLVYWVLSIFVELICSSQFIVANIISSLIAAA 126
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
L + + +G GD+KL + G + + + + F++T R
Sbjct: 127 ALFIASLLCKICIRGSIGAGDIKLFVVMGLLLGLDGIWSAIFLSLVLSFITAIYFLITKR 186
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
K+ + +G A+++G +S + +
Sbjct: 187 KGK----------------KDAMAFGPALAIGTWLSIFLTGM 212
>gi|217964303|ref|YP_002349981.1| type IV leader peptidase family protein [Listeria monocytogenes
HCC23]
gi|217333573|gb|ACK39367.1| type IV leader peptidase family protein [Listeria monocytogenes
HCC23]
Length = 236
Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V+ I + L F ++D+F +PN + IV + ++ AFL ++ F
Sbjct: 99 VYCIIYYFLAFFFITDIFYMYVPNSILIVFSCALIILAFLYNQPLIDFIYSSILS-CFFY 157
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F +G GD+K+L + + G+ + F + + IL +L R+ N
Sbjct: 158 LLFFIIFRKGIGLGDIKILIILSSFLGFKTGYYIFFLAIILGTIILFTALLLKRVKKNKQ 217
Query: 131 PIFGMFVPKSF 141
F ++ SF
Sbjct: 218 VPFVPYIYASF 228
>gi|325288262|ref|YP_004264443.1| peptidase A24A prepilin type IV [Syntrophobotulus glycolicus DSM
8271]
gi|324963663|gb|ADY54442.1| peptidase A24A prepilin type IV [Syntrophobotulus glycolicus DSM
8271]
Length = 150
Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 17/147 (11%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L+ A++ DL +IP+ + +++ + L+ L V + ++
Sbjct: 11 LFSSLLLAASVWDLRKRIIPDSICLLIALAGLIDFSPANF--------LGVLAALPLLIA 62
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+ + +GGGD+KL + + G+ G L +
Sbjct: 63 ALYKPDSIGGGDIKLTATAGIVLGFWG---------CTAGLTLGLMASLFFYFWAQAIRR 113
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + +P +S+G L
Sbjct: 114 LRKLEPQKAAQASLPMAPFLSLGFLAI 140
>gi|113460603|ref|YP_718668.1| prepilin peptidase [Haemophilus somnus 129PT]
gi|170718925|ref|YP_001784094.1| peptidase A24A prepilin type IV [Haemophilus somnus 2336]
gi|112822646|gb|ABI24735.1| prepilin peptidase [Haemophilus somnus 129PT]
gi|168827054|gb|ACA32425.1| peptidase A24A prepilin type IV [Haemophilus somnus 2336]
Length = 235
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 25/166 (15%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE------ 56
+ + + L D ++ + + LL A+
Sbjct: 79 PQNIYVGLWLACCGYLIFCLVLVDWLYQLVSQTLCQALFILGLLGAYQGISPLTLEQSLI 138
Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
V +++I+ F+ + +G GD L+ + WT +F + G I
Sbjct: 139 GSLSGFSVFYLIYIVAKLFYRYEALGRGDYWLMLGLGSFISWTK-LPLLIFLACLTGLIY 197
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
VF + IP+ + + +I Y
Sbjct: 198 VVFNARDKKTIF------------------IPFAPFLCLSTIIVYL 225
>gi|11498541|ref|NP_069769.1| hypothetical protein AF0936 [Archaeoglobus fulgidus DSM 4304]
gi|2649660|gb|AAB90302.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 240
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM----DYELIALH 61
M+ A FL+ L++A DL S ++PNRV ML L +
Sbjct: 1 MLDLAKFLVVLGFLLYACKLDLESRIVPNRVWKRMLLVSLPITVYQLFLGKHLIFEYMIA 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
+ ++V + + + GG D K + + AV F + P+F F
Sbjct: 61 GIFVVMVIALSYALYLIGAYGGADAKAIMALAVIFPFYPTFNGFPLLG 108
>gi|13475424|ref|NP_106988.1| type IV prepilin peptidase [Mesorhizobium loti MAFF303099]
gi|14026176|dbj|BAB52774.1| type IV prepilin peptidase [Mesorhizobium loti MAFF303099]
Length = 176
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 7/148 (4%)
Query: 14 IPPFCLVFAALSDLFSAMIPNR---VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L A D + I NR + + + LL L + + L + L++F+
Sbjct: 12 LAIPLLARIAWLDFTTQKIANRDALLLLCLGAGSLLLLSLQSGSWWDMGLSAIAALVLFV 71
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F F+ +G GDVKL+ G + F +L + V+
Sbjct: 72 GLFPFWVLRKVGAGDVKLMAVVPFLVGGN----DLVGFSILLLLFALATAVVVKNPFLLP 127
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ K +P+G+ IS+ +
Sbjct: 128 QGAFRVYVQHLDRKGVVPFGVPISVASI 155
>gi|315444673|ref|YP_004077552.1| prepilin signal peptidase PulO-like peptidase [Mycobacterium sp.
Spyr1]
gi|315262976|gb|ADT99717.1| prepilin signal peptidase PulO-like peptidase [Mycobacterium sp.
Spyr1]
Length = 147
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L+ + D+ +PN +++ L+ A ++G + + + +
Sbjct: 13 VLVWLIALSAFDIRHRRLPNVLTLPGAAVILVAATVVGHGGPALLGATALFAV--YVTVH 70
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F+ +G GDVKL G + A+ +++ + R + P
Sbjct: 71 LFSPGSLGAGDVKLAIGLGALTGAYGA--DVWVVAALGASLMTGALALCRRLQGAGP 125
>gi|307263191|ref|ZP_07544812.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13
str. N273]
gi|306871553|gb|EFN03276.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13
str. N273]
Length = 131
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 20/148 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L+ +DL +I NRV + +L + ++L+ L ++ +I F
Sbjct: 1 MVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLMYGTL-----SWLPAVLCLVIGFV 55
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F N +G GDVKLLT + + ++ + L R
Sbjct: 56 LFLLNAIGAGDVKLLTVLMLAIPSPLAIFFLFLTACSGLLLIIIGWLFYRKT-------- 107
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +PYGIAIS G L +
Sbjct: 108 -------IREKGLPYGIAISTGFLTTLL 128
>gi|38233932|ref|NP_939699.1| hypothetical protein DIP1346 [Corynebacterium diphtheriae NCTC
13129]
gi|38200193|emb|CAE49874.1| Putative membrane protein [Corynebacterium diphtheriae]
Length = 168
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 10/163 (6%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ + + + L D + +PNR ++ + A L L+
Sbjct: 11 MGEALKILGITSVGSWWAFRLILFDCTTRRLPNRYTLSAAACSFIWAVLTQH--FEWILY 68
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ ++ ++ A +GGGD+KL + + + + V L
Sbjct: 69 AGIWVLPYVFIGSLSAMRGIGGGDIKLSMALGIVAAAHAGAQGVVVASICSSCLSIVLGL 128
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+R + + + +P+G ++ + S
Sbjct: 129 ILRFLHSKRCNSTKYSN--------LPHGPSMIIATWFVVVWS 163
>gi|332978026|gb|EGK14767.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Desmospora sp. 8437]
Length = 228
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 17/145 (11%)
Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
+IPNR++ + FLL L G + + ++ + +GGGD+K+
Sbjct: 99 RLIPNRLNGMAALGFLLVRLLSGQEVLSPL-GAGLFGGGILLAISLLSRGGVGGGDMKMA 157
Query: 90 TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
+ + GW V G S ++T + K +P+
Sbjct: 158 AAAGLALGWPKVATGVGLAVLSGGLWASFLLMTGK----------------VDRKTPLPF 201
Query: 150 GIAISMGGLISYPDSYLFKVALMGL 174
+++G +S+ + + L
Sbjct: 202 APHLAIGFYVSWLWGEILVRKYLSL 226
>gi|158313534|ref|YP_001506042.1| peptidase A24A prepilin type IV [Frankia sp. EAN1pec]
gi|158108939|gb|ABW11136.1| peptidase A24A prepilin type IV [Frankia sp. EAN1pec]
Length = 220
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 47/164 (28%), Gaps = 24/164 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIV-----MLGSFLLTAFLLGMDYELIALHLLVG 65
+L V A DL +P+ + + + + AL
Sbjct: 69 AYLYLTVVGVVLAAVDLRVHRLPDVIVLPSYAVLAALLAVPALAEGAPNRWPRALLAGAV 128
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAV---WFGWTPSFLSFLFFVAILGGILSVFILT 122
+ +G GDVKL V W GW+ + + I G ++ V +
Sbjct: 129 AWLLYAGLRLLPGAGLGRGDVKLAGLLGVATGWLGWSAVVVWLVATTMISGAVVLVLLAL 188
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
R ++ I YG + G LI+
Sbjct: 189 RR----------------VSRRDPIAYGPFLLFGALIAVLGVGW 216
>gi|257461389|ref|ZP_05626485.1| bacterial Peptidase A24 domain protein [Campylobacter gracilis
RM3268]
gi|257441112|gb|EEV16259.1| bacterial Peptidase A24 domain protein [Campylobacter gracilis
RM3268]
Length = 251
Score = 43.7 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 24/175 (13%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
E + +AV + L+ + D +P + V+ L + D +
Sbjct: 96 EPDLAKAAVLGLCFILLMALSAIDFEYKAVPESLLYVVTALSLAYTLMYDFDLSGVGAAA 155
Query: 63 LVGLIVFIICFCFF---AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
I F++ F MG D+ + GW +S + +
Sbjct: 156 GYAAIFFVLRFIVTFVLKREAMGSADIFIAGVMGAILGWKLGGISIYIGAILTLPAYLIA 215
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
++P+ +SMG L+++ L +
Sbjct: 216 ---------------------HRKGYELPFVPFLSMGLLLTFIFRDQILRLLDVI 249
>gi|33152388|ref|NP_873741.1| flp operon protein B [Haemophilus ducreyi 35000HP]
gi|21326705|gb|AAL92465.1| unknown [Haemophilus ducreyi]
gi|33148611|gb|AAP96130.1| flp operon protein B [Haemophilus ducreyi 35000HP]
Length = 144
Score = 43.7 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+F L++ + +D+ S +I N+V + + + L ++ + LI
Sbjct: 7 LVLFSFIVLLLIWLSYTDIRSRIITNKVVLALFCAILPFSWFTQGMVYP-----MPALIC 61
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+I F F ++G GD KL+ + + F G++ + L R +
Sbjct: 62 LVIGFVLFMLGVIGAGDAKLMAVLMLAVPPEYTIFFLFFTTCAGLGLIIIGGLFFRQVIV 121
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
K +PYG+AIS+G + +
Sbjct: 122 ---------------KKGLPYGVAISVGFIAT 138
>gi|327401464|ref|YP_004342303.1| peptidase A24B, FlaK domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316972|gb|AEA47588.1| Peptidase A24B, FlaK domain protein [Archaeoglobus veneficus SNP6]
Length = 234
Score = 43.7 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 2/145 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLV 64
M+ + L+ A DL +PNR+ +ML FL + + L
Sbjct: 1 MIALIKIAVALVFLLEACKMDLKERRVPNRLWKLMLLVFLPLDIIEYYLQPFSLTFALFQ 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
V C+ + + GG D K + A+ F PSF F G+L+ L
Sbjct: 61 FAFVAAFCYALYYLGLYGGADAKAIMCLAIAFPAYPSFFVFPLLNE-GLGMLAFTTLANS 119
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
++ + + V + + PY
Sbjct: 120 VLAAPFLVAVLLVRNALSGNLEFPY 144
>gi|325276681|ref|ZP_08142407.1| peptidase A24A prepilin type IV [Pseudomonas sp. TJI-51]
gi|324098188|gb|EGB96308.1| peptidase A24A prepilin type IV [Pseudomonas sp. TJI-51]
Length = 156
Score = 43.7 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 2/137 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L + D+ I N +++ + LL F G + + ++
Sbjct: 4 IVLLLWLALCSEQDVRQRQISNLLTLGVASCALLWLFATGHSWMGADASDAGWALAIVML 63
Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ + G DVKL+ + A+ G +F+ + L ++ I
Sbjct: 64 LTLPGYMYGHFGADDVKLMGALALASGTQYVLGTFIGAGVSVLVWLLARRRLWLLLNPKI 123
Query: 131 PIFGMFVPKSFLMKNKI 147
+ + K
Sbjct: 124 KKRLQALTEEMGDKQAF 140
>gi|331646877|ref|ZP_08347976.1| putative type IV prepilin leader peptidase [Escherichia coli M605]
gi|331044194|gb|EGI16325.1| putative type IV prepilin leader peptidase [Escherichia coli M605]
Length = 256
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 23/154 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLLVG 65
+ + L+F +L D++ +P V+ + L + + V
Sbjct: 118 ALWAIGIFLVLLFLSLIDIYEHWLPAIVTYPLFWVGLTFSPFCTFSEMRIWGAMISFFVM 177
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ ++ GGD+ L T+ W G FL ++ ++ + M
Sbjct: 178 YFSMSVTSMIKREDVFAGGDIALATAAGAWLGLE-VLHLFLLISSLSFISYALPLRFKGM 236
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ P G A+++G +
Sbjct: 237 NYS-------------------PMGPALALGFMA 251
>gi|225420070|ref|ZP_03762373.1| hypothetical protein CLOSTASPAR_06413 [Clostridium asparagiforme
DSM 15981]
gi|225041326|gb|EEG51572.1| hypothetical protein CLOSTASPAR_06413 [Clostridium asparagiforme
DSM 15981]
Length = 267
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 25/176 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-------MDYELIAL 60
S + L+ AA D IP+ +S+ +L + L++ L + +
Sbjct: 102 QSVPACLFASALIAAAWIDWDFTYIPDGISLFILLAGLISFIPLPACGLLTRFSWGSLGD 161
Query: 61 HLLVGLIVFIICFCFFAF--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
H++ +++ F +GGGD+KLL + + G L+ L + ++
Sbjct: 162 HVVAAVLIGSALFIVSRLTGGGIGGGDIKLLAAAGFYLGLPRGLLAMLGGYILAAVWVAP 221
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+L + ++ IP ++ ++S + + L
Sbjct: 222 ALLRGK----------------IHRRSSIPMAPFFAVSLILSLLWGEQLLIWYLNL 261
>gi|121601550|ref|YP_993008.1| A24 family peptidase [Burkholderia mallei SAVP1]
gi|124383373|ref|YP_001026340.1| putative fimbriae assembly-related protein [Burkholderia mallei
NCTC 10229]
gi|126449619|ref|YP_001080386.1| putative fimbriae assembly-related protein [Burkholderia mallei
NCTC 10247]
gi|134282195|ref|ZP_01768900.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
gi|242314685|ref|ZP_04813701.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
gi|254197642|ref|ZP_04904064.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
gi|254358542|ref|ZP_04974815.1| putative fimbriae assembly-related protein [Burkholderia mallei
2002721280]
gi|121230360|gb|ABM52878.1| peptidase, A24 (type IV prepilin peptidase) family [Burkholderia
mallei SAVP1]
gi|124291393|gb|ABN00662.1| putative fimbriae assembly-related protein [Burkholderia mallei
NCTC 10229]
gi|126242489|gb|ABO05582.1| putative fimbriae assembly-related protein [Burkholderia mallei
NCTC 10247]
gi|134246233|gb|EBA46322.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
gi|148027669|gb|EDK85690.1| putative fimbriae assembly-related protein [Burkholderia mallei
2002721280]
gi|169654383|gb|EDS87076.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
gi|242137924|gb|EES24326.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
Length = 159
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ + L AL+DL + + ++ + A + A H +G F +
Sbjct: 7 LVASWTLASLALADLRTRRLATFAVALVGALYAALALVGAPGDGGFASHAALGAAAFALG 66
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + GGDVKL +W G ++ + +V I R
Sbjct: 67 AAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRAPRVLAW- 125
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F +PYG+A++ GGL++
Sbjct: 126 --------FAPARGVPYGVALAAGGLLA 145
>gi|46143343|ref|ZP_00135452.2| COG4960: Flp pilus assembly protein, protease CpaA [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 131
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 20/148 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L+ +DL +I NRV + +L + ++L+ L ++ +I F
Sbjct: 1 MVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLMYGTL-----SWLPAVLWLVIGFV 55
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F N++G GDVKLL + + + I+ + L R
Sbjct: 56 LFLLNVIGAGDVKLLAVLMLAVPSSFAIFFLFLTACTGLLIIIIGWLFYRQT-------- 107
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + +PYGIAIS G L +
Sbjct: 108 -------IREKGLPYGIAISTGFLTTLL 128
>gi|284044508|ref|YP_003394848.1| peptidase A24A prepilin type IV [Conexibacter woesei DSM 14684]
gi|283948729|gb|ADB51473.1| peptidase A24A prepilin type IV [Conexibacter woesei DSM 14684]
Length = 191
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 16/167 (9%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
A+ L+ LV AL D+ +IPN + + + L
Sbjct: 40 ALGLVLTALLVPIALIDVAVRLIPNWATAAGAFAAVALGLATDPAAVGDQLLAGAAAAAL 99
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ MG GDVKL ++ G + +
Sbjct: 100 LLLAALARPGDMGMGDVKLAGMLGLFLGAE---------------VAVALLAGFVAAALA 144
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMG-GLISYPDSYLFKVALMGLS 175
+ + + + +P G +++G + Y + L L GL
Sbjct: 145 GLVLLIRHGAAGARRATLPLGPFLALGAAVALYAGAPLLDAYLTGLG 191
>gi|153812896|ref|ZP_01965564.1| hypothetical protein RUMOBE_03303 [Ruminococcus obeum ATCC 29174]
gi|149830974|gb|EDM86064.1| hypothetical protein RUMOBE_03303 [Ruminococcus obeum ATCC 29174]
Length = 192
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 23/160 (14%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-------LHLLV 64
+L ++ A+ D +++PN++ + ML + + Y + + ++
Sbjct: 48 YLCLTGFMLVLAVIDHEKSIVPNKLLVAMLVIRAVLLVIEVAVYPVYWKEKMISAVGGML 107
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
++ + + +G GDVKL + G + + L +L GI SV L +
Sbjct: 108 VGLILFLLAYVLSRKSIGLGDVKLAAVLGWYLGLSLIWWD-LVAGLLLAGIYSVVQLARK 166
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
MK+ IP ++ G ++
Sbjct: 167 K---------------LSMKDSIPLVPFLAAGTILILLLG 191
>gi|16800653|ref|NP_470921.1| hypothetical protein lin1585 [Listeria innocua Clip11262]
gi|16414072|emb|CAC96816.1| comC [Listeria innocua Clip11262]
Length = 236
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ I + L F ++D+ +PN V I+ L + L+ +
Sbjct: 98 VIGCIIYYFLAFFFVTDILYLHVPNSVMILFFLVLLTCYISFQQPAVSLIYSSLISNCFY 157
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ F F +G GD+K+L + + G+ ++ F + + IL ++ ++ N
Sbjct: 158 LLFFILFRK-GIGLGDIKILIILSSFLGFEMGYIVFFLSIVLGAIILLSALVLKKVEKNK 216
>gi|251770805|gb|EES51394.1| peptidase A24A domain protein [Leptospirillum ferrodiazotrophum]
Length = 247
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 20/151 (13%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+++ + +L D+ + IP ++ LL + + + I FI+
Sbjct: 112 YVVLLLLTTYISLVDIKTLTIPKLSLELLFVFGLLLSGNQQRIPTAMEGLIFGLAITFIV 171
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F F+ N +G GDV L ++ G + A
Sbjct: 172 FF--FSKNGLGIGDVFLFGILGLFVGPIGLVPILVLAPAWG------------------L 211
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ FV K IP+ + M GL Y
Sbjct: 212 CYTTFVKKQNPGAALIPFAPFLGMAGLFVYL 242
>gi|146351313|ref|YP_001210540.1| putative type IV leader peptidase [Arthrobacter nitroguajacolicus]
gi|146218877|emb|CAL09948.1| putative type IV leader peptidase [Arthrobacter nitroguajacolicus]
Length = 196
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 21/164 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV---MLGSFLLTAFLLGMDYELIALHLL 63
+ +A + + A++D + +PN +LG+ L++ ++ ++ +A L
Sbjct: 47 LLTAAIIYTTMIGLVLAVTDFKTHRLPNAFIWPSYGILGALLVSQGVITQEWSDVARAGL 106
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFIL 121
V + F + +G GDVKL A+ GW+ + +LG I + +L
Sbjct: 107 VAAATLAVFFLLHRYTSLGLGDVKLAGMLAIPLGWSSWTAGYYGPALGFLLGAIAGIVVL 166
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
K + +G + G L+ S
Sbjct: 167 ITTK----------------SSKTHLAFGPYLVAGALVILYTSA 194
>gi|33865321|ref|NP_896880.1| putative type 4 prepilin peptidase [Synechococcus sp. WH 8102]
gi|33632490|emb|CAE07302.1| putative type 4 prepilin peptidase [Synechococcus sp. WH 8102]
Length = 260
Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 21/150 (14%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN----- 79
D+ +P + + LL + G L +V + A
Sbjct: 118 IDIDHLWLPEPLCRWGMVLGLLFSAGAGWTVLGDHLVAAALALVLLEGLSGMAERILGQP 177
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+G GD KL W G ++ + + SV ++ R
Sbjct: 178 ALGLGDAKLAALGGAWLGAAGIAVAMALGTLVGAVVGSVGRVSGR--------------- 222
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ +G I++G + + +
Sbjct: 223 -LQPRQAFAFGPFIALGIWLVWLRGADWWW 251
>gi|332982938|ref|YP_004464379.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON]
gi|332700616|gb|AEE97557.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON]
Length = 145
Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 3/117 (2%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
+AA +DL I + V + + L L + V F +
Sbjct: 18 YAAATDLKRREIDHWVPLTVAVYGTLYQLLYAHRLPEALICTAAVFAVLFAVFAV-SNGG 76
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
GGGDVKLLTS A+++G + +F I+G I V V
Sbjct: 77 FGGGDVKLLTSLALFYG--SNIFVVVFASCIIGAIYGVIRAIVTRRGLKTESPFAPA 131
>gi|302335938|ref|YP_003801145.1| peptidase A24A prepilin type IV [Olsenella uli DSM 7084]
gi|301319778|gb|ADK68265.1| peptidase A24A prepilin type IV [Olsenella uli DSM 7084]
Length = 260
Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 20/169 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT---------------AFLLG 52
+A L L+ +L+DL +IPN ++ ++ A+ +
Sbjct: 77 EAAGSLGLADVLLVTSLTDLDLRIIPNGCVAALVVLHVVRVLVAEHMGLMPSGQTAWDVL 136
Query: 53 MDYELIALHLLVGLIVFIICF-CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ +L +L L+ + +GGGDVKLL++ A GW L+ + +
Sbjct: 137 VPALACSLAVLGTLVALAVGMDALLGHESVGGGDVKLLSAVAFCLGWRQFLLALVMACLL 196
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
L + + P+G +I++ ++
Sbjct: 197 G----IAGYLAEVLGRGALGWLRGGHAAVGGPAGTFPWGPSIALACWLT 241
>gi|330465098|ref|YP_004402841.1| peptidase A24A prepilin type IV [Verrucosispora maris AB-18-032]
gi|328808069|gb|AEB42241.1| peptidase A24A prepilin type IV [Verrucosispora maris AB-18-032]
Length = 259
Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 28/168 (16%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV------MLGSFLLTAFLLGMDYEL 57
++V +A +LI LVF DL +P+R+++ +L +
Sbjct: 108 GELVAAAWWLIFAVPLVFV---DLAVHRLPDRLTLPAAAGTWLLLGLTALVDAGPAPWLR 164
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVK---LLTSTAVWFGWTPSFLSFLFFVAILGG 114
L F F G GD K + W+GW L L V + G
Sbjct: 165 ATAAALGLAGFFATTTLLFGARGFGIGDAKLALGAGALLGWYGWATPVLGLLLAVMLSGL 224
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ ++T R + +P+G + +G L +
Sbjct: 225 VALGLLVTRRARW----------------SSHLPFGPYLVLGTLGALL 256
>gi|315181063|gb|ADT87977.1| hypothetical protein vfu_A02864 [Vibrio furnissii NCTC 11218]
Length = 162
Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 41/103 (39%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
+ + D IPN + +++ + ++ LL ++L + L+VF++
Sbjct: 1 MIVGVYDARQHRIPNILLGLLMLAGVIQTLLLDQTFDLFVGQIGAMLMVFVLALMCHMAG 60
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
M GDVKLL G+ +F + I ++ +
Sbjct: 61 WMAPGDVKLLAVIGFLTGFGHLADTFFYIGVSAIFIGVMYGML 103
>gi|149176682|ref|ZP_01855294.1| hypothetical protein PM8797T_20234 [Planctomyces maris DSM 8797]
gi|148844561|gb|EDL58912.1| hypothetical protein PM8797T_20234 [Planctomyces maris DSM 8797]
Length = 160
Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M ES+ + F + + + + + IPN +++ + ++ A + G +L
Sbjct: 1 MFESREIAVIAFGCLGTLICLSMIIEKNTQKIPNWLNLSGIICGIVIAIVDG----QWSL 56
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
HL + F+ F I G VKLL + G ++ + F+ G
Sbjct: 57 HLTGFFLAFLTGIFFLKLGISAAGLVKLLMAAGTIAGPVIPIMTLVLFLLFWG 109
>gi|295395652|ref|ZP_06805844.1| type 4 prepilin peptidase PilD [Brevibacterium mcbrellneri ATCC
49030]
gi|294971468|gb|EFG47351.1| type 4 prepilin peptidase PilD [Brevibacterium mcbrellneri ATCC
49030]
Length = 215
Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 22/153 (14%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF---- 76
D +P+ V++ G+ ++ + G+ L G + I+ FF
Sbjct: 77 ILTAIDFAERRLPDVVTLPAAGASVIALIVGGLASGDWGPALRGGAGMLILFAAFFVMFI 136
Query: 77 -AFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTVRMITNHIPIF 133
A G GDVKL S G F L F +LG + V ++ +R
Sbjct: 137 VAGGAFGFGDVKLGLSMGAVLGTYSWFALLLGPFIGMLLGFAVGVVLMIMRKA------- 189
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
MK I G + +G L+ L
Sbjct: 190 --------TMKTAIALGPYLIIGTLVIIVIGAL 214
>gi|269795087|ref|YP_003314542.1| prepilin signal peptidase PulO-like peptidase [Sanguibacter
keddieii DSM 10542]
gi|269097272|gb|ACZ21708.1| prepilin signal peptidase PulO-like peptidase [Sanguibacter
keddieii DSM 10542]
Length = 261
Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 22/140 (15%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF-----N 79
D+ +P+ + + + ++ + L ++ +F
Sbjct: 118 IDIDVHRLPDAIVLPSIVVAVVLLTVAAALAGDWGSLGRAALGGAVLFGAYFLMLVAYPA 177
Query: 80 IMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GDVKL V+ GW +LGG +V ++ +
Sbjct: 178 GMGFGDVKLAAVLGVYLGWLGWGVLAVGAMAAFLLGGFFAVALVVRKKAG---------- 227
Query: 138 PKSFLMKNKIPYGIAISMGG 157
+ IP+G + +G
Sbjct: 228 -----RGSGIPFGPWMLLGA 242
>gi|188586700|ref|YP_001918245.1| peptidase A24A domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351387|gb|ACB85657.1| peptidase A24A domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 245
Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 17/149 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ LV + ++DL ++ N++ LLT ++ + + L ++
Sbjct: 105 LLLGSLLVISVITDLLKGIVLNKMIFFFGILILLTRIVIIEELFYHLISGLFSFLLLFAV 164
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ + MGGGDVKL + G S S F I ++ +++ R
Sbjct: 165 MVL-SGHKMGGGDVKLYGIIGLGVGLLDSLASLFFASLIGLAVMLPGLISGR-------- 215
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
K +IP+ I G +++Y
Sbjct: 216 --------ISRKTEIPFVPFIWAGVMVTY 236
>gi|33599781|ref|NP_887341.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Bordetella bronchiseptica RB50]
gi|33567378|emb|CAE31291.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Bordetella bronchiseptica RB50]
Length = 275
Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 6/133 (4%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN- 79
A DL ++P+ +++ +L + LL ++ +AF
Sbjct: 140 VLACFDLEHLLLPDCLTLPLLWAGLLANAAGMGLATPAQAIAGAAAGYALLAGVAWAFRR 199
Query: 80 -----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+G GD KLL + W GW L + R +
Sbjct: 200 RTGRDGLGLGDAKLLAALGAWLGWQALPALLLAAGLWGVAAGLLARWRRRAALQPLGPGL 259
Query: 135 MFVPKSFLMKNKI 147
F + +
Sbjct: 260 AFGAALIVAGAGL 272
>gi|302387440|ref|YP_003823262.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
gi|302198068|gb|ADL05639.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
Length = 139
Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 22/155 (14%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + +I L A+++DL ++PN + + + G ++ + + LIAL L+
Sbjct: 5 LAAVQAVIFIALLCAASVTDLTKRIVPNWLCLGIAGVSIIGFTPVKLLGILIALPFLLAA 64
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ F MGGGD+KL+ + + G T L+ + +++L + ++ + ++
Sbjct: 65 VFF---------GGMGGGDIKLMAACGLVLGLTKGLLAAMAGLSLLLIYVGIYRIVCKVQ 115
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
K P +S G L++Y
Sbjct: 116 RR-------------EAKKAFPLAPFLSAGCLLAY 137
>gi|320531949|ref|ZP_08032852.1| hypothetical protein HMPREF9057_00720 [Actinomyces sp. oral taxon
171 str. F0337]
gi|320135842|gb|EFW27887.1| hypothetical protein HMPREF9057_00720 [Actinomyces sp. oral taxon
171 str. F0337]
Length = 225
Score = 43.3 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 30/169 (17%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-------FLLTAFLLGMDYELIAL 60
V L L A D +PNR+ +L + G
Sbjct: 67 EVIVALPLVALLGAACSVDAVCHRLPNRILGPAALWTGAATTTLVLLNVVTGTPLSEAGW 126
Query: 61 HL------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF--LFFVAIL 112
L V V + + MG GD KL +W G+ + + +
Sbjct: 127 ALLRSVLCAVSAGVIVGAMALLPGSGMGLGDAKLCAVLGLWLGYFGGTYTAMGIILGFFI 186
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
GG++++ ++ R K I +G +S+GG +++
Sbjct: 187 GGLVAIALMISR---------------LASRKTLIAFGPYLSLGGWLAW 220
>gi|222480546|ref|YP_002566783.1| peptidase A24A prepilin type IV [Halorubrum lacusprofundi ATCC
49239]
gi|222453448|gb|ACM57713.1| peptidase A24A prepilin type IV [Halorubrum lacusprofundi ATCC
49239]
Length = 330
Score = 43.3 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL---------IAL 60
A+ L +AAL D+ + +PNR+ + L
Sbjct: 8 ALRLFVVPVFAWAALQDVRTRRLPNRLWPPLYAFGALLLIWELAAIWPLAGFEEVRFAVR 67
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP 100
+ L V + + F+ GG D K L + A+ F P
Sbjct: 68 AAISLLFVAPLGYAFWYLGAFGGADAKALIAIAILFPTFP 107
>gi|290893951|ref|ZP_06556927.1| comC protein [Listeria monocytogenes FSL J2-071]
gi|290556489|gb|EFD90027.1| comC protein [Listeria monocytogenes FSL J2-071]
Length = 236
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V+ I + L F ++D+F +PN + IV + ++ AFL ++ F
Sbjct: 99 VYCIIYYFLAFFLITDIFYMYVPNSILIVFSCALIILAFLYNQPLIDFIYSSMLS-CFFY 157
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F +G GD+K+L + + G+ + F + + IL +L R+ N
Sbjct: 158 LLFFIIFRKGIGLGDIKILIILSSFLGFKTGYYIFFLAIILGTIILFTALLLKRVKKNKQ 217
Query: 131 PIFGMFVPKSF 141
F ++ SF
Sbjct: 218 VPFVPYIYASF 228
>gi|167589714|ref|ZP_02382102.1| Peptidase A24A, prepilin type IV [Burkholderia ubonensis Bu]
Length = 116
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 39/105 (37%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L A+ DL + + NR + + + A L+ + +A H+ G + ++
Sbjct: 10 TAVLASLAVQDLRARRLSNRAVLAFATLYFVAAALVRDGFAPVAGHVATGAAMLLLFGGL 69
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+GGGDVKL + +W G + A +
Sbjct: 70 RHAGWIGGGDVKLAAAVFLWAGPALAVPVLTIVGAGGLACGVAAL 114
>gi|317403503|gb|EFV84006.1| hypothetical protein HMPREF0005_03134 [Achromobacter xylosoxidans
C54]
Length = 168
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 19/158 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-------FLLTAFLLGMDYELIALHL 62
+L+ + +DL +PN + + L
Sbjct: 2 LWWLLFACWNLVLIYTDLRYRRVPNTLIVAGFAGQALWLLAAWLAPAWGYPPRWAGWPMA 61
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
L G + + F ++ +MG GDVK + + G+ P ++ + + G ++
Sbjct: 62 LAGFALALPFFPLWSRRLMGAGDVKAIAILGLLAGFAPLVMTLVAASLLAGLHALSYLFL 121
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
R + + PYG + + L
Sbjct: 122 SRSRALPL------------RARQTPYGAYLGVAALSV 147
>gi|209546012|ref|YP_002277902.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538869|gb|ACI58802.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 187
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 2/144 (1%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + A + C AA+ D IPN V+ L + + A G +
Sbjct: 3 MTYDLTLMPAAAALAVACATTAAVLDHRQGHIPNAVTYPCLLAGFMLAAAGGGLAGIGLA 62
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ +I FA GGGDVKL+ + G P+ ++GG++++F
Sbjct: 63 FAGLIAAG-MIFIIAFAAGSCGGGDVKLMAALGAILGLWPAI-DVTLASLMVGGVIALFS 120
Query: 121 LTVRMITNHIPIFGMFVPKSFLMK 144
+ R+ + +
Sbjct: 121 MARRVQWSVLARNVGLFALLLPAG 144
>gi|116671465|ref|YP_832398.1| peptidase A24A, prepilin type IV [Arthrobacter sp. FB24]
gi|116611574|gb|ABK04298.1| peptidase A24A, prepilin type IV [Arthrobacter sp. FB24]
Length = 229
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 22/169 (13%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA---FLLGMDYELIALHLLVGLI 67
FL + + DL ++PNR+ + MLG LL + + + + + +
Sbjct: 70 AFLFLCAAGLVLSRIDLQHKLLPNRIIVPMLGIGLLLLLLDASMNQRWGNLLVAAIGCAV 129
Query: 68 VFI--ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSVFILTV 123
F+ + + MG GDVKL ++ G+ + + ++G + SV ++T
Sbjct: 130 TFVIYLLLALISPRGMGMGDVKLSAPLGLYLGYLSVGHLILGVALGFVVGAVTSVLLVTG 189
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
K +P+G ++ G +++ L+
Sbjct: 190 GFAG---------------RKTSVPFGPSMFAGCVLTVLWGTEIGRVLL 223
>gi|255994430|ref|ZP_05427565.1| putative type IV prepilin peptidase [Eubacterium saphenum ATCC
49989]
gi|255993143|gb|EEU03232.1| putative type IV prepilin peptidase [Eubacterium saphenum ATCC
49989]
Length = 231
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 48/140 (34%), Gaps = 3/140 (2%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL---GMDYEL 57
+ + ++ +I + LVF A+ D ++ + I++L S + +
Sbjct: 71 LAYFDIYYALPAMITIWLLVFIAIGDFKYMIVVDEAVILLLASCIGFYGQHEGIANIFYG 130
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
L++ +I +G GDVK+ + G+ + + + G +
Sbjct: 131 ALTGGGFLLLISVIGRLITKTETLGFGDVKVAAALGAVLGFDGIVVVLVSAFLMAGVFAA 190
Query: 118 VFILTVRMITNHIPIFGMFV 137
++ + F+
Sbjct: 191 CVLIKNKNAKESYIPLVPFI 210
>gi|302525853|ref|ZP_07278195.1| predicted protein [Streptomyces sp. AA4]
gi|302434748|gb|EFL06564.1| predicted protein [Streptomyces sp. AA4]
Length = 376
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V + V AL+D+ +P+ +++ LT L L L +
Sbjct: 59 VAWLVSVLGVPLALADVRHRRLPDVLTLPAYPVVALTLTLAAASGGGWRLAAGAVLGCLL 118
Query: 71 -----ICFCFFAFNIMGGGDVKLLTSTAVWFG 97
+ + +G GDVKL S G
Sbjct: 119 FGGTHLIVHRLSAGGLGPGDVKLAGSFGAVLG 150
>gi|259046342|ref|ZP_05736743.1| type IV leader peptidase family protein [Granulicatella adiacens
ATCC 49175]
gi|259036979|gb|EEW38234.1| type IV leader peptidase family protein [Granulicatella adiacens
ATCC 49175]
Length = 241
Score = 42.9 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 16/157 (10%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFII 71
LV AL D+ S + RV +++L +L + + + + L ++ +
Sbjct: 99 FFFCSFLVLIALMDIDSYEVDLRVLLLLLLFEILLSSQTWEERLFSMIIGFLFYGVIKSL 158
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+ G GDV LT+ + F L G R+
Sbjct: 159 GHFIWKEEAFGMGDVYFLTTLGIIFSPIQITFVGLLSFVCGGVFCCFLHFFFRLK----- 213
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+KIP+ ISM +I+Y S +
Sbjct: 214 ----------ERSDKIPFTPFISMSAIITYLFSIQWI 240
>gi|20093290|ref|NP_619365.1| hypothetical protein MA4505 [Methanosarcina acetivorans C2A]
gi|19918646|gb|AAM07845.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 264
Score = 42.9 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 2/110 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS--FLLTAFLLGMDYELIALHLL 63
M+ L++++ DL + +PNR+ +ML S L ++ + +
Sbjct: 1 MIEVLKLAACLPFLLYSSYLDLETRRVPNRIWKLMLFSLSGFLIYEIVEGGILFMLQLVF 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
F + + F + GG D K L P + + +LG
Sbjct: 61 SFFSSFFLAYLLFRLRVFGGADAKALIVIGTLVPVYPVLDFYGYTFPLLG 110
>gi|149179074|ref|ZP_01857646.1| hypothetical protein PM8797T_30409 [Planctomyces maris DSM 8797]
gi|148842065|gb|EDL56456.1| hypothetical protein PM8797T_30409 [Planctomyces maris DSM 8797]
Length = 86
Score = 42.9 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
L++AA D +PN ++ M+ S L+ G L LL ++
Sbjct: 15 FVSIVLIYAAYIDGKELRVPNWITYPMVLSGLIYMTWTGGLAGLGWG-LLGMVVGLATLL 73
Query: 74 CFFAFNIMGGGDV 86
++ MG GDV
Sbjct: 74 PLYSVGGMGAGDV 86
>gi|327189764|gb|EGE56908.1| putative cpaA pilus assembly protein [Rhizobium etli CNPAF512]
Length = 172
Score = 42.9 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 12/165 (7%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL---- 62
V + I ++AA +D + IPN + + ++ + L A ++ E + L
Sbjct: 4 VVVFINSISVLLFLYAAWTDFRTWKIPNTIVLALVTLYALRAMVVIFGSEDVGAALFASS 63
Query: 63 ------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
GL++F++ +AF + G GD KL ++ GW + + L
Sbjct: 64 GIGGDVGAGLLMFMLGVVLWAFRLFGAGDAKLFLPIGLFVGWHGMLPFSFLLLVLGVVTL 123
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
V L V + H+ KIPYG+ + L++
Sbjct: 124 LVLRLPVPLRVAHLAF--FMRIGEIRASRKIPYGVLMVFAALLTL 166
>gi|225026032|ref|ZP_03715224.1| hypothetical protein EUBHAL_00271 [Eubacterium hallii DSM 3353]
gi|224956638|gb|EEG37847.1| hypothetical protein EUBHAL_00271 [Eubacterium hallii DSM 3353]
Length = 147
Score = 42.9 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 52/128 (40%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++ L+ ++ D +IPN++++++ S + + F+ L + + +
Sbjct: 4 ITMIVIVSILLVISIIDFKIKIIPNQLNVLLFISGIWSGFVFQEVTFLSRFLGVFSVSIP 63
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +GGGDVKL+ ++ V G + + + + G ++T R
Sbjct: 64 MFILAILCSGGLGGGDVKLMAASGVLLGIKWNIFAACAGLLLGGLYGFFLLITKRAKRKD 123
Query: 130 IPIFGMFV 137
G F+
Sbjct: 124 CFALGPFL 131
>gi|154148659|ref|YP_001406532.1| peptidase A24 N- domain-containing protein [Campylobacter hominis
ATCC BAA-381]
gi|153804668|gb|ABS51675.1| bacterial Peptidase A24 N- domain family [Campylobacter hominis
ATCC BAA-381]
Length = 253
Score = 42.9 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 17/161 (10%), Positives = 44/161 (27%), Gaps = 23/161 (14%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIAL 60
E ++ + + + L+ + D +P+ + L L + + ++
Sbjct: 96 EPNILKALILGLCFIILLALSAIDFKYKAVPDSLLYPSLVLALCYSIIDFKFDGVIAASV 155
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ I MG D+ + G F S + ++
Sbjct: 156 LAFAFFALRFIVSFCLKKEAMGPADIFIAGVIGAILGLRLGFASIFVAAILTLPAYAIV- 214
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
++P+ +++G LI +
Sbjct: 215 --------------------NKKGYELPFVPFLALGMLIVF 235
>gi|152983320|ref|YP_001355009.1| A24A family peptidase [Janthinobacterium sp. Marseille]
gi|151283397|gb|ABR91807.1| peptidase A24A family [Janthinobacterium sp. Marseille]
Length = 172
Score = 42.9 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 14/166 (8%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL--HLLVGLIV 68
+ + D+ +PN + ++ L G Y + + LL +I
Sbjct: 1 MIAFLILLCIAIIAYDVLFRRVPNSLLLLALLVHTGYMIATGSGYAGLGVTQSLLAVVIA 60
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI-------- 120
I+ +A +MG GDVK L G F++ + G +F
Sbjct: 61 LIVFVPLYALRVMGAGDVKFLAIVGALLGLKALFVACFIGSLVAGLHALMFYSAQMWLAM 120
Query: 121 ----LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
L M V + + IPY +++G +
Sbjct: 121 MPSGLHRLMQQVGGSSMYQRVLNARQGRKGIPYAAYLAIGVIFYLL 166
>gi|313106813|ref|ZP_07793026.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa 39016]
gi|310879528|gb|EFQ38122.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa 39016]
Length = 140
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 2/132 (1%)
Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF--FAFNIMGGGDVK 87
+ N + + + ++ +++ + + +C + +G DVK
Sbjct: 1 MRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVCLSLPGYLLGRLGAADVK 60
Query: 88 LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
L + + S F + + + L R + + + ++
Sbjct: 61 YLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSAMNEEVRLRRAPSKNKSF 120
Query: 148 PYGIAISMGGLI 159
P+ A+S G L
Sbjct: 121 PFIFAMSAGLLA 132
>gi|312882142|ref|ZP_07741891.1| prepilin peptidase CpaA [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370188|gb|EFP97691.1| prepilin peptidase CpaA [Vibrio caribbenthicus ATCC BAA-2122]
Length = 145
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 19/157 (12%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M FL+ F + SD F I N +++L + + + ++
Sbjct: 1 MSLEVYFLVLAFICLCICFSDYFYRKIHNSALLILLIFQVFFSP--------LDIYFTSF 52
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+V I +A +G D+K + ++ + +++ G + + L+ ++
Sbjct: 53 ALVLGIGLILYALIYIGASDIKYASVMSLTVAFDDILWAYITTSFAGGFLAVFYFLSRKL 112
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
++ + IP+GIAIS+G +
Sbjct: 113 LSKKRFN-----------QEGIPFGIAISIGFYLIIL 138
>gi|312136650|ref|YP_004003987.1| peptidase a24a domain protein [Methanothermus fervidus DSM 2088]
gi|311224369|gb|ADP77225.1| Peptidase A24A domain protein [Methanothermus fervidus DSM 2088]
Length = 372
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNR---VSIVMLGSFLLTAFLLGMDYELIALHL 62
M+ + +I +AA SD +IPN+ ++++ ++ + + L
Sbjct: 1 MIPTICVIIGIIVTFYAAYSDFKWGIIPNKLTFSTLLLGLLLNTAWAVMMSNIPFLTNML 60
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
+ VF IC+ F+ GGDVKLLT+ A + S
Sbjct: 61 IFVGSVFAICYFFYWIGAWSGGDVKLLTALAALVPYRYSITDVTVTA 107
>gi|76801289|ref|YP_326297.1| preflagellin peptidase [Natronomonas pharaonis DSM 2160]
gi|76557154|emb|CAI48729.1| probable preflagellin peptidase [Natronomonas pharaonis DSM 2160]
Length = 356
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 15/95 (15%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI---------------ALHLLVGLIVFI 70
D+ + IPNR + +L ++ + LL V
Sbjct: 53 DIETRRIPNRTWLPLLAVGIIALLWDTVAVTGFVTPTEVPTFERRRFVVQTLLSVGFVAP 112
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ + F+ GG D K + + AV F P++ F
Sbjct: 113 LGYIFWRIGGFGGADAKAIITLAVAFPVYPTYYVF 147
>gi|145634704|ref|ZP_01790413.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
PittAA]
gi|145268249|gb|EDK08244.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
PittAA]
Length = 225
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 27/167 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ F + L + D +I + + +L L A L + A
Sbjct: 79 IFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAAS 138
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V ++ I ++ G GD L + + + FL ++LG S+
Sbjct: 139 FFIVFYTIYWIAKFYYGKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI- 196
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
K IP+ +++ +I Y Y +
Sbjct: 197 -------------------HKKKKEFIPFAPFMNLSAVIIYFVKYYW 224
>gi|240136823|ref|YP_002961290.1| putative prepilin peptidase (fragment) [Methylobacterium extorquens
AM1]
gi|240006787|gb|ACS38013.1| putative prepilin peptidase (fragment) [Methylobacterium extorquens
AM1]
Length = 158
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 22/148 (14%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------ 78
DL +IP++V++ +L + L G+ I L+ F++ + A
Sbjct: 24 IDLRRRIIPDQVNLALLILGAGASALRGLALPQILASLVAAAGAFLLAWSLRAAYARLRG 83
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+G GDVK + + A W G L L + +L R
Sbjct: 84 RTGLGLGDVKFMGAAAAWTGLAGLPLMILVASLSALAAFGLAVLAGRR------------ 131
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSY 165
+++P+ +++G ++ +
Sbjct: 132 ---LDGASRLPFAPFLALGLHVALLAGH 156
>gi|237798398|ref|ZP_04586859.1| hypothetical protein POR16_06116 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021250|gb|EGI01307.1| hypothetical protein POR16_06116 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 160
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 8/159 (5%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LL 63
M + V A D I NR++I G+ + L
Sbjct: 1 MFCVMKLFLLLAWFVICAEQDARRKEISNRLTIGGAVLAAAYLSFTGVAWLGAPASEAGL 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
++ + + +G GDVKL+T+ A+ +F+ G L ++ L
Sbjct: 61 ALVLALALTLPGYMMGRLGAGDVKLMTAMALASDSAYLLCTFVGA----GVALLLWFLIG 116
Query: 124 RMITNHIPIFGMFVPKSFLMKN--KIPYGIAISMGGLIS 160
+ + H+P + K+P+ + +G L+S
Sbjct: 117 KHLWPHMPQRVTQRYACLNPRTSDKLPFSPFLLIGLLLS 155
>gi|225572858|ref|ZP_03781613.1| hypothetical protein RUMHYD_01049 [Blautia hydrogenotrophica DSM
10507]
gi|225039784|gb|EEG50030.1| hypothetical protein RUMHYD_01049 [Blautia hydrogenotrophica DSM
10507]
Length = 152
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 1/125 (0%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
DL + N + G +A+ L L+ I F + ++G D
Sbjct: 2 DLKKEKVSNEWILCGWAVGSFWQIWSG-GIRGLAVFFLGALLPLTILFLLYYLRMLGAAD 60
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
+KLL++ G + L+ + + + ++ R + + F ++ K
Sbjct: 61 LKLLSAVGGIIGPKKILVCMLYSFFLGAILAFLLLVARRSLAERLRYFFHYLWNFIRTKE 120
Query: 146 KIPYG 150
PYG
Sbjct: 121 FAPYG 125
>gi|240142190|ref|YP_002966700.1| putative Prepilin peptidase [Methylobacterium extorquens AM1]
gi|240012134|gb|ACS43359.1| putative Prepilin peptidase [Methylobacterium extorquens AM1]
Length = 263
Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLV 64
+A L + V A DL + IP ++ + LL + L + + L ++
Sbjct: 119 ATAAVLAILWTGVVAGWIDLTTQQIPEWATLALFWGGLLVSPLEPDLQVRVQGAFLAFVL 178
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
VF + + M GGDV L T+ A WFG P+ F+ A +
Sbjct: 179 VGGVFALSGWVLKVDAMSGGDVALATAAAAWFGPMPALAMFILAAAAVLA 228
>gi|148655702|ref|YP_001275907.1| peptidase A24A domain-containing protein [Roseiflexus sp. RS-1]
gi|148567812|gb|ABQ89957.1| peptidase A24A domain protein [Roseiflexus sp. RS-1]
Length = 254
Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 20/163 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
+ + L+ D +I ++ + ++ +F + L V
Sbjct: 94 ISLVYAAVVAAVLIITGAIDWQHRLIYTLPTLGATLASVVASFAVPSHSLLNALAGLFVA 153
Query: 66 LIVFIICFCFFAF------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
++F+I + G GDV L G T + L+ + + G ++
Sbjct: 154 GVLFVIFYVLAKILFPSHRAPFGLGDVYLGMFIGAALGLTNLPGALLYGMLLAGVFSAIL 213
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
++ R P I YG + +G LI
Sbjct: 214 VVLRRAGKRDTP-------------QYISYGTFLCIGALIYLL 243
>gi|303241417|ref|ZP_07327920.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
gi|302591026|gb|EFL60771.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
Length = 151
Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 22/159 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L+FAAL DL IP+ + +++L + L + + + + +++
Sbjct: 9 CLFVVLLIFAALWDLRKREIPDTIVVLILSTGFLA-----IQPWNAVVGFITTGLPYVLA 63
Query: 73 FCFFAFN---IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
F + MGGGD+KL+ + G T L + + +
Sbjct: 64 AVFIKKDSGFSMGGGDIKLMAACGFVLGITFGTLHSIISLTMALLFG------------- 110
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
K+ + +P GG+ SY YL +
Sbjct: 111 -LCLKCHDSKNRIRTMTLPLAPFFCAGGIFSYIAFYLMR 148
>gi|225386961|ref|ZP_03756725.1| hypothetical protein CLOSTASPAR_00711 [Clostridium asparagiforme
DSM 15981]
gi|225046973|gb|EEG57219.1| hypothetical protein CLOSTASPAR_00711 [Clostridium asparagiforme
DSM 15981]
Length = 209
Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 53/199 (26%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF--- 69
I L A D + IPN ++++ L ++ + GM + LH +
Sbjct: 5 WIFMIYLAVCAGWDGRTRRIPNGLTVLGLAGGVMMVGMQGM-WTAAGLHGVGVAAGLHGA 63
Query: 70 ---------------------------------IICFCFFAFNIMGGGDVKLLTSTAVWF 96
C + F ++G GDVKL W
Sbjct: 64 EAADGLQGVQTATAVQAWAFAAMAAFGRAVIAVAAGMCLYRFRVIGAGDVKLAAVIVAWL 123
Query: 97 GWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNK---------- 146
G+ + +F LG + S+ L R I + + +L K
Sbjct: 124 GFAEG-GAGIFAGLCLGAVWSLGRLARRRILWKRFSYLAGYVRDYLATGKIAAYYNRERD 182
Query: 147 -----IPYGIAISMGGLIS 160
IP G+ +++G ++
Sbjct: 183 GDEAAIPLGVCLAVGTVVV 201
>gi|145224341|ref|YP_001135019.1| peptidase A24A, prepilin type IV [Mycobacterium gilvum PYR-GCK]
gi|145216827|gb|ABP46231.1| peptidase A24A, prepilin type IV [Mycobacterium gilvum PYR-GCK]
Length = 147
Score = 42.5 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
L+ + D+ +PN +++ L+ A ++G + + + + F+
Sbjct: 16 WLIALSAFDIRHRRLPNVLTLPGAAVILVAATVVGHGGPALLGATALFAV--YVTVHLFS 73
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+G GDVKL G + A+ +++ + R + P
Sbjct: 74 PGALGAGDVKLAIGLGALTGAYGA--DVWVVAALGASLMTGALALCRRLQGAGP 125
>gi|148556402|ref|YP_001263984.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
gi|148501592|gb|ABQ69846.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
Length = 151
Score = 42.5 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-LLVGLIVFIICFCFFAFNI 80
A+ DL S IPNR+ +++ D + +V + I FA
Sbjct: 19 CAVVDLRSRTIPNRLVVLVALLAAPYWLAAAPDLLGRVIGQAVVIAVALPILLLLFAIRA 78
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
GGGDVKL + +W + + + + + R T
Sbjct: 79 WGGGDVKLSAALLLWLPGKEALEAAAIMAVTGAVLALLILPFGRRATAR 127
>gi|148242093|ref|YP_001227250.1| prepilin peptidase, type IV [Synechococcus sp. RCC307]
gi|147850403|emb|CAK27897.1| Prepilin peptidase, type IV [Synechococcus sp. RCC307]
Length = 268
Score = 42.5 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 27/155 (17%)
Query: 28 FSAMIPNRVSIVMLGSFLLTA----FLLGMDYELIALHLLVGLIVFIICFCFFAFN---- 79
+ +P + + S L + + LG+ EL+ H + +I
Sbjct: 122 RTMRLPEPLCRWGVISGLALSALAGWWLGLGTELLLWHSVAAATGLLIFEGISGLGEKLL 181
Query: 80 ---IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+G GD KL W G ++ V + L+
Sbjct: 182 GAPALGLGDAKLAALLGAWLGLQGLAVACAVAVVLGAAFGLAGRLSG------------- 228
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
K P+G +++GGL+S+ L
Sbjct: 229 ---LLGPKQPFPFGPFLAVGGLLSWLACDALWALL 260
>gi|329936004|ref|ZP_08285804.1| type IV peptidase [Streptomyces griseoaurantiacus M045]
gi|329304482|gb|EGG48360.1| type IV peptidase [Streptomyces griseoaurantiacus M045]
Length = 244
Score = 42.5 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 46/164 (28%), Gaps = 18/164 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
AV+L+ V + D +P+ +++ + + E L
Sbjct: 92 ELAVWLLLAPAGVLLTIVDFRVQRLPDVLTLPLAALAPALLGAAAVLPEHAGHWRTALLG 151
Query: 68 VFIICFCFFAF-----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ +F + MG GDVKL GW G V
Sbjct: 152 ALVLGAGYFLLFLINPDGMGFGDVKLALGLGAVLGWY-------------GWGTVVLGTF 198
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ + + V + + IP+G + G
Sbjct: 199 AGFLLAGLYGLALVVTRRATRRTAIPFGPFLLAGAYAGLLMGAY 242
>gi|83950074|ref|ZP_00958807.1| membrane protein, putative [Roseovarius nubinhibens ISM]
gi|83837973|gb|EAP77269.1| membrane protein, putative [Roseovarius nubinhibens ISM]
Length = 164
Score = 42.2 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 9/161 (5%)
Query: 5 KMVFSAVFLIPPFCL---VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
++ +A PF L ++ A +DL I N + ++ F++ + + ++
Sbjct: 2 EITQTAATWFFPFALPICLWVAYTDLKLMKILNLAVLALIAVFVVIGPVA-LPFDAYLWR 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L++ + A ++G A + + IL L
Sbjct: 61 YAHFLVILALGIGLNAAGLVGA----GDAKFAAAAAPFVALGDIRLLLVILAFTLVAGFA 116
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
R+ + +S+ + K P G+++ G L Y
Sbjct: 117 AHRLGKHTRLRNLAPHWESWHREGKYPMGLSLG-GALAIYL 156
>gi|238796221|ref|ZP_04639731.1| Type II secretory pathway, prepilin signal peptidase PulO and
peptidase [Yersinia mollaretii ATCC 43969]
gi|238719914|gb|EEQ11720.1| Type II secretory pathway, prepilin signal peptidase PulO and
peptidase [Yersinia mollaretii ATCC 43969]
Length = 260
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 3/108 (2%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
I L+F A D +P V++ + + LL + E + +
Sbjct: 117 EGVAACILWQVLLFLAEIDWRETWLPAVVTLPLFWAGLLVSPFEPSVAERVLGGFAGFTL 176
Query: 68 VFIICFCF---FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
+++ +++ GGD+ L + W G+ AI
Sbjct: 177 MWLCMAIVGRWRRLDVLAGGDIALSAAAGAWLGFAKIPQFLFIAAAIF 224
>gi|318041642|ref|ZP_07973598.1| putative type 4 prepilin peptidase [Synechococcus sp. CB0101]
Length = 281
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 43/160 (26%), Gaps = 29/160 (18%)
Query: 28 FSAMIPNRVSIVMLGSFLLTAFLLGMD---------YELIALHLLVGLIVF----IICFC 74
+P + + L+ + + G L GL+ F +
Sbjct: 131 DQLWLPEPLCRWGVVLGLVVSAVAGFSQGDAAGRQLLLWHLLAASAGLLGFETTSALAQK 190
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+G GD KL W G T LS + V + +++ R
Sbjct: 191 LLGKPALGLGDAKLAALLGAWLGLTGVGLSVMLSVFAGALFGVIGLISGR---------- 240
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
P+G + GL + F + L
Sbjct: 241 ------LKRGQPFPFGPFLGGAGLAVWCAGNGFWLQRFSL 274
>gi|294676067|ref|YP_003576682.1| A24 family peptidase [Rhodobacter capsulatus SB 1003]
gi|294474887|gb|ADE84275.1| peptidase, subfamily A24A, prepilin type IV [Rhodobacter capsulatus
SB 1003]
Length = 167
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 3/151 (1%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
A+F+ + + +DL I N + ++ F + L+ + E+ A L +
Sbjct: 10 ALALFVAVLPICAWVSYTDLKYMKIRNAAVLSLIAVFAVVGGLV-LPPEVWAWRWLHLPV 68
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
V +I +G GDVK ++A +F + + + +L L + + R+
Sbjct: 69 VLVIGLVLNIALGVGMGDVKFAAASAPFF--SADPGRVMLALVLLQACLILAFVAHRIAR 126
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ + K P+G+ + L
Sbjct: 127 AIPAVRAATPDWASWGHRKFPFGLVLVGALL 157
>gi|226306476|ref|YP_002766436.1| hypothetical protein RER_29890 [Rhodococcus erythropolis PR4]
gi|226185593|dbj|BAH33697.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length = 154
Score = 42.2 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 4/126 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
MV L + V + DL +PN ++ ++ A G + L+
Sbjct: 1 MVQLISGLAVVWWCVAISTVDLAVRRLPNSFTLPGYVVVMVYAAASGTVWVAAVGSALLA 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTV 123
I + + MG GDVKL G ++L L ++L L V I
Sbjct: 61 GI--HLLAHVMSPGSMGLGDVKLSLPLGALTGLVGADAWLWSLVSASVLTATLGVVIELR 118
Query: 124 RMITNH 129
++
Sbjct: 119 KLGRRQ 124
>gi|255657460|ref|ZP_05402869.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-23m63]
gi|296449055|ref|ZP_06890845.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Clostridium
difficile NAP08]
gi|296879878|ref|ZP_06903851.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Clostridium
difficile NAP07]
gi|296262148|gb|EFH08953.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Clostridium
difficile NAP08]
gi|296429167|gb|EFH15041.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Clostridium
difficile NAP07]
Length = 216
Score = 42.2 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 53/156 (33%), Gaps = 15/156 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-FLLTAFLLGMDYELIALHLLVG 65
V +++ L+ ++ D ++ + + + + ++ + H+
Sbjct: 55 VECVQYMVLIPFLIIISIVDYYTIYVYDITIVSGIIVQGIIFLVFCNIVQFDYINHIFGL 114
Query: 66 LIVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+I FII + +G GDV L + G F + + + +T
Sbjct: 115 VIGFIIPYIIAKLTKGLGYGDVGLYSLCCFALGNNYGFYVIVLSFILAFLFFIILYITK- 173
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K +K +IP+ IS+ ++
Sbjct: 174 ------------IFKDIDIKKQIPFTPFISLATILI 197
>gi|302384574|ref|YP_003820396.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
gi|302195202|gb|ADL02773.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
Length = 171
Score = 42.2 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 44/134 (32%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+++ L A D IPN + + + L L LL LIV ++
Sbjct: 4 YVVLLLILGTGAFFDAQEHRIPNGLVLWGVIIGFLLEIAGSGKPLAGLLFLLRLLIVTMV 63
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F F ++G GD+KL + G L+ F I + + +
Sbjct: 64 FFLLFLCRMIGAGDIKLAALICGFLGLRAGALAVGFGFLIGAIWSFIKMTVRGSLFIRFS 123
Query: 132 IFGMFVPKSFLMKN 145
++ + F
Sbjct: 124 CLFAYIRRVFQTGK 137
>gi|218711153|ref|YP_002418773.1| Prepilin peptidase [Escherichia coli ED1a]
gi|218349936|emb|CAQ87347.1| Prepilin peptidase [Escherichia coli ED1a]
Length = 235
Score = 42.2 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 42/151 (27%), Gaps = 22/151 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF---LLGMDYELIALHLLVG 65
I L L+D+ +P ++ ++ + L +L +
Sbjct: 85 LLFLSILTGLLTVMTLTDIAVCRLPRIFTLSLIVLGAAFRYSLEELTYSLLNASLWFGMT 144
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++ +G GDV L+ A+W + L A G L + + R
Sbjct: 145 YLLRQFFITAKGTEALGLGDVFLIAGIAMWTQPQHTP--LLITAAASGAFLFILLFCRRR 202
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
+ +P+ +
Sbjct: 203 -----------------RQQALPFAPFLCAS 216
>gi|320120328|gb|EFE28495.2| prepilin peptidase [Filifactor alocis ATCC 35896]
Length = 262
Score = 42.2 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 49/164 (29%), Gaps = 20/164 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNR-----VSIVMLGSFLLTAFLLGMDYE 56
K F+ + ++ L+ D + I + I + + + M +
Sbjct: 93 KYGWTSFTLIQVVFWGMLMIVGFIDYDTMYIYDAMLLFYFIIFGIYYGIADFANIWMHIK 152
Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
++ +++ + ++ G GDV L + G +FL + L
Sbjct: 153 GAVYCFVIFSVIYFLAKLYYGQEAFGFGDVLLNGVLGFYLGSHNTFLICFLPFYVAAVDL 212
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ R I+ + + +G + + I
Sbjct: 213 LFQRIFFRNISLNREVS---------------FGPYMCISAWII 241
>gi|207724792|ref|YP_002255189.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
gi|206590017|emb|CAQ36978.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
Length = 154
Score = 42.2 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 10/136 (7%)
Query: 33 PNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFIICFCFFAFNIMGGGDVKLLT 90
PN + V L ++ + L G I +A MG GDVK T
Sbjct: 2 PNWLVAVGLVLSIVLVKFGTVMALAYDWRDVWLGGAIALAGFLPLYALGWMGAGDVKFFT 61
Query: 91 STAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI--------FGMFVPKSFL 142
+ GW +L + G +L R+ +
Sbjct: 62 VAGLLAGWHGLVAIWLVSSVLAGVHALAILLLRRVDASAPSAWMLMRVCPALARWDPGHA 121
Query: 143 MKNKIPYGIAISMGGL 158
+ IPY +++G L
Sbjct: 122 GRRGIPYAAYMAIGLL 137
>gi|284161397|ref|YP_003400020.1| peptidase A24B, FlaK domain protein [Archaeoglobus profundus DSM
5631]
gi|284011394|gb|ADB57347.1| Peptidase A24B, FlaK domain protein [Archaeoglobus profundus DSM
5631]
Length = 227
Score = 42.2 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLV 64
+V + L+ + A++ DL + I +R+ + M+ + + + + + L+
Sbjct: 2 LVETVKVLVTLLIFIRASIEDLKTREIDDRIWLFMIALAIPLNVIQYIQEPFNLTFALIQ 61
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
+++FI+ + GG D K L S ++ F P F I
Sbjct: 62 FVLIFILANVMYYLLNFGGADCKALISLSIMFPIYPEIFEFTVKGFIFAL 111
>gi|296274437|ref|YP_003657068.1| peptidase A24A domain-containing protein [Arcobacter nitrofigilis
DSM 7299]
gi|296098611|gb|ADG94561.1| peptidase A24A domain protein [Arcobacter nitrofigilis DSM 7299]
Length = 256
Score = 42.2 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 39/127 (30%), Gaps = 15/127 (11%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
MK + + L + L+ + DL +P+ + +V++ + +D +
Sbjct: 91 MKIGFSLEYFLILAMFYTLLILSFIDLEYKAVPDWILLVVVVLGFSCVYNDFLDSIKNSF 150
Query: 61 HLLVGLIVFIICFCFFA---------------FNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ ++ F+ +G GD+ ++ G T ++
Sbjct: 151 IFVGAFVMLDFFITFYIQNIKSKILKDETLKTQRALGEGDLPIIAVIGALLGLTSGMVAI 210
Query: 106 LFFVAIL 112
Sbjct: 211 FLAALFA 217
>gi|330941597|gb|EGH44380.1| prepilin peptidase [Pseudomonas syringae pv. pisi str. 1704B]
Length = 205
Score = 42.2 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
Query: 67 IVFIICFCFFAFNI 80
+ F
Sbjct: 191 LALWSVFWLVQLVG 204
>gi|288930466|ref|YP_003434526.1| peptidase A24B, FlaK domain protein [Ferroglobus placidus DSM
10642]
gi|288892714|gb|ADC64251.1| Peptidase A24B, FlaK domain protein [Ferroglobus placidus DSM
10642]
Length = 235
Score = 42.2 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 3/146 (2%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE--LIALHLLV 64
++ A FLI + A+ DL ++PN+ VML + + + Y ++
Sbjct: 5 IYVAKFLICLAIFLKASQLDLKERIVPNKYWKVMLLAVTPFNLVEFLSYSTFDFVFAIVQ 64
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFILTV 123
+ + + GG D K L + + F P F L ++ +
Sbjct: 65 IAFASSLAYLLYRIGAYGGADAKALMALSYAFPRYPEVGIFPLLIKGFSFAFSTLANAVI 124
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPY 149
I +F + K + K +IPY
Sbjct: 125 AAPFLAIYMFLSNLIKGNVSKGEIPY 150
>gi|312876914|ref|ZP_07736890.1| peptidase A24A domain protein [Caldicellulosiruptor lactoaceticus
6A]
gi|311796325|gb|EFR12678.1| peptidase A24A domain protein [Caldicellulosiruptor lactoaceticus
6A]
Length = 261
Score = 42.2 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 22/177 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---------YEL 57
+ + + + L++ D+ + I I++ + + +
Sbjct: 94 LEAVLLYLFYIVLLYIGAVDVRTKEISTISIILLGILKIGFVAVQTLSEGKHMSISGMVF 153
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+ ++ + + MG GDV LL + F W + L A+
Sbjct: 154 VLSGGILNSAFVALIWLLSKGKAMGFGDVLLLIAGGFGFDWKEMVVCNLLSFAVGALWSV 213
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
V+++ + K++IP+ I I+ + L
Sbjct: 214 VYLIKHGCGKSSF-------------KSEIPFAPFICFALFITTIWGKWLADLYINL 257
>gi|323486493|ref|ZP_08091816.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum
WAL-14163]
gi|323400196|gb|EGA92571.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum
WAL-14163]
Length = 180
Score = 41.8 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 8/145 (5%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII- 71
L +AL D +PN + + +F + F+ G + + + +F I
Sbjct: 4 FFLLSFLTGSALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIR 63
Query: 72 -------CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F F F +MG GD+K++ A + G + +A ++L
Sbjct: 64 TFFTVIIFFPLFLFRMMGAGDIKVMAVIAGYMGMDRGVEIIFYGLAAAAVWSLFYMLKQH 123
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
++ I F ++ F + +PY
Sbjct: 124 ILAERIKYFLNYIKHLFQSEQILPY 148
>gi|299138543|ref|ZP_07031722.1| Prepilin peptidase [Acidobacterium sp. MP5ACTX8]
gi|298599789|gb|EFI55948.1| Prepilin peptidase [Acidobacterium sp. MP5ACTX8]
Length = 327
Score = 41.8 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+ +G GDVKLL A + G+ P+ L+ LF IL + ++ R
Sbjct: 242 AVRHRDGLGMGDVKLLAMIAAFLGFWPAILA-LFVGVILTSAYGLTLMVRRQA------- 293
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGL-ISYPDSYLFKVA 170
++P G IS+GGL + + L
Sbjct: 294 --------TATTRLPLGTFISIGGLVAALFGAPLIAWY 323
>gi|283787706|ref|YP_003367571.1| prepilin peptidase TadV [Citrobacter rodentium ICC168]
gi|282951160|emb|CBG90851.1| putative prepilin peptidase TadV [Citrobacter rodentium ICC168]
Length = 132
Score = 41.8 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 20/143 (13%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
L+ +DLF I N+ +++L L++ + ++ ++ ++ F +
Sbjct: 1 MLLRVCYTDLFYRKIKNKTVVLILIVSLVSGIIQYGIP-----SIIFPCVILLVGFLLSS 55
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
F+++G GDVKLL + + F+ A+ G ++ + ++ + ++
Sbjct: 56 FSLVGAGDVKLLVALSFSLSSEDIL-RFITTTALCGLLVVIPVIYICIVKR--------- 105
Query: 138 PKSFLMKNKIPYGIAISMGGLIS 160
K +PYGIAISMG I
Sbjct: 106 -----KKTTVPYGIAISMGYFIV 123
>gi|158320911|ref|YP_001513418.1| peptidase A24A prepilin type IV [Alkaliphilus oremlandii OhILAs]
gi|158141110|gb|ABW19422.1| peptidase A24A prepilin type IV [Alkaliphilus oremlandii OhILAs]
Length = 174
Score = 41.8 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L + D+ IP+ + + +LGS + D I +LV + ++
Sbjct: 41 ILICNILSVIMILDIRYLKIPDALIVFLLGSS-ILNVATVGDINFIISRILVFFSISLLM 99
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ + +GGGDVKL++ ++ FG+ F+ + + IL + N
Sbjct: 100 IIYSLISGVGGGDVKLISVLSLIFGFKEILCIFILSIILAAAASVFLILMKKAKLNTKIP 159
Query: 133 FGMFV 137
F+
Sbjct: 160 LSPFI 164
>gi|313125036|ref|YP_004035300.1| leader peptidase family protein [Halogeometricum borinquense DSM
11551]
gi|312291401|gb|ADQ65861.1| leader peptidase family protein [Halogeometricum borinquense DSM
11551]
Length = 319
Score = 41.8 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-----YELI 58
+ + + L+ L +AA D+ + +P+ + ++ ++ + E I
Sbjct: 2 NATLPDILRLVIVPVLGWAAWQDIETRRVPSVIWYPLVALGVVLLAWDTLPHLAFAPEDI 61
Query: 59 ALHLLVGLIVFI---ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103
+ VG+ + + + F+ GG D K L + ++ P +L
Sbjct: 62 LYFVRVGISLLFVAPLSYIFWRLGGFGGADAKALITISILVPTFPQYL 109
>gi|329890998|ref|ZP_08269341.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568]
gi|328846299|gb|EGF95863.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568]
Length = 73
Score = 41.8 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 103 LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
L+ GG + + + +V + K IPYG+AI++G L++YP
Sbjct: 3 PFILYTALAGGGFCLLLMTARSHLPFFAQTGPGWVMRLMQPKGDIPYGVAIAIGALLAYP 62
Query: 163 DSYLFKVALMG 173
S L + G
Sbjct: 63 SSPLMTAYITG 73
>gi|294814759|ref|ZP_06773402.1| type IV peptidase [Streptomyces clavuligerus ATCC 27064]
gi|326443138|ref|ZP_08217872.1| type IV peptidase [Streptomyces clavuligerus ATCC 27064]
gi|294327358|gb|EFG09001.1| type IV peptidase [Streptomyces clavuligerus ATCC 27064]
Length = 261
Score = 41.8 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 22/166 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
AV+L V A+ D +P+R+++ + + + L
Sbjct: 107 ELAVWLALAPFAVLLAVVDRRVHRLPDRLTLPLAAAAAVLLGAAARLPGAAGSWSGALLG 166
Query: 68 VFIICFCFFAF-----NIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFI 120
++ + A MG GDVKL S V GW + F + G + + +
Sbjct: 167 GVVLGAAYLALFVIHPGGMGFGDVKLALSLGVVLGWYGWGTLFMGAFAGFLFGSLYGLAL 226
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ + + IP+G + G L L
Sbjct: 227 MALGRAG---------------RRTAIPFGPFMIGGALAGVLLGAL 257
>gi|89068026|ref|ZP_01155443.1| hypothetical protein OG2516_07592 [Oceanicola granulosus HTCC2516]
gi|89046265|gb|EAR52322.1| hypothetical protein OG2516_07592 [Oceanicola granulosus HTCC2516]
Length = 161
Score = 41.8 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 44/153 (28%), Gaps = 1/153 (0%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ + + A +DL I N +L F + ++ +
Sbjct: 1 MGELLATAWFLPFVLPICFYVAWTDLARMKITNVAVGALLVVFAVVGAMV-LPLPDYLWR 59
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+V ++ +A + GGGD K L + A + + + + L
Sbjct: 60 WAHFALVLVVALALYAGGLFGGGDAKFLAAAAPYVALADLSSMLILLSGFMLAAYAAHRL 119
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
+ +P+G A++
Sbjct: 120 ARASALRRLAPGWESWTSGRRFPMGLPFGGALA 152
>gi|255316632|ref|ZP_05358215.1| hypothetical protein CdifQCD-7_19897 [Clostridium difficile
QCD-76w55]
Length = 196
Score = 41.8 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 20/160 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL---- 62
+ + ++ LV + DL IP+++ ++ L + L
Sbjct: 49 IDAILYSCIIPVLVSISYIDLKVKEIPDKLIFIIYIYGLFLIVVNKNYINHNIFILNNLC 108
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+ I N +GGGD+KL+ + ++F T S L + LG I+SVF++
Sbjct: 109 SSFSLFSIYLVIAIITNGVGGGDIKLMGALGLFFN-TSSIFKLLVYPVFLGVIMSVFLIV 167
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
++ K+ P G AIS+ + +
Sbjct: 168 LKKAKL---------------KDNFPLGPAISISACLIFL 192
>gi|312621078|ref|YP_003993806.1| type iv prepilin peptidase tadv/cpaa [Photobacterium damselae
subsp. damselae]
gi|311872799|emb|CBX86890.1| Type IV prepilin peptidase TadV/CpaA [Photobacterium damselae
subsp. damselae]
Length = 146
Score = 41.8 bits (97), Expect = 0.038, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ + + + D+ I N+ +V+ L+ + + + +FI
Sbjct: 9 WFLLTAISFYICIQDIRLRKISNKSCVVVGSICLILSINQAN-----YSIVPYTITIFIF 63
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F F F I+ GD+KL+++ ++ L+ + + + G + I+ +R
Sbjct: 64 GFILFLFRIIAAGDIKLISAFSIAIDPQYILLTLICVLFLGGLVAFFQIIWLR------- 116
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLI 159
KS +PYG+ I +G L+
Sbjct: 117 ----VTRKSLNDSLGVPYGVPICIGCLL 140
>gi|301169006|emb|CBW28603.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae 10810]
Length = 225
Score = 41.8 bits (97), Expect = 0.038, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 51/167 (30%), Gaps = 27/167 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ L + D +I + + +L L A L + A
Sbjct: 79 IFTVWLGATLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAAS 138
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V ++ I ++ G GD L + + + FL ++LG S+
Sbjct: 139 FFIVFYAIYWIAKFYYGKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI- 196
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
K IP+ +++ +I Y Y +
Sbjct: 197 -------------------HKKKKEFIPFAPFMNLSAVIIYFVKYYW 224
>gi|300694114|ref|YP_003750087.1| prepilin peptidase transmembrane protein (cpaa) [Ralstonia
solanacearum PSI07]
gi|299076151|emb|CBJ35464.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
solanacearum PSI07]
Length = 154
Score = 41.8 bits (97), Expect = 0.038, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 10/136 (7%)
Query: 33 PNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFIICFCFFAFNIMGGGDVKLLT 90
PN + V L + + L G I +A MG GDVK
Sbjct: 2 PNWLVAVGLVLSIALVGFGPVMALAYDWRDVWLGGAIALAGFLPLYALGWMGAGDVKFFA 61
Query: 91 STAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI--------FGMFVPKSFL 142
+ GW +L + G +L R+ +
Sbjct: 62 VAGLLAGWHGLVAIWLVSSVLAGVHALAIVLLRRVDASAPSAWMLMRVCPALARWDAGHA 121
Query: 143 MKNKIPYGIAISMGGL 158
+ IPY +++G L
Sbjct: 122 GRRGIPYAAYMALGLL 137
>gi|242399070|ref|YP_002994494.1| Archaeal signal peptidase, A24 family [Thermococcus sibiricus MM
739]
gi|242265463|gb|ACS90145.1| Archaeal signal peptidase, A24 family [Thermococcus sibiricus MM
739]
Length = 375
Score = 41.8 bits (97), Expect = 0.039, Method: Composition-based stats.
Identities = 10/97 (10%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL----IALHL 62
+ + L+ + + +D+ + I ++ + G +L +G + +
Sbjct: 1 MELLLILLGVIMGILTSYTDIKTGFIDDKHVFPIAGLGILYYLYMGFFIKHNTIFALSGI 60
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWT 99
+ F++ + + GD+ +L + +
Sbjct: 61 IGLGTGFLLGYFLYMMGGWASGDIVILMGYSALLPYA 97
>gi|269929168|ref|YP_003321489.1| peptidase A24A prepilin type IV [Sphaerobacter thermophilus DSM
20745]
gi|269788525|gb|ACZ40667.1| peptidase A24A prepilin type IV [Sphaerobacter thermophilus DSM
20745]
Length = 242
Score = 41.8 bits (97), Expect = 0.039, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 21/154 (13%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-----LIALHLLVGLIV 68
I L+ D +I + L L+ A L L ++
Sbjct: 103 IFSLLLLVILRIDWQHHLIYTATIVPGLAVALVAAALHSPGMLLSAGVAAVGAGLFFALL 162
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F + + +G GD+ L G + + + + + R
Sbjct: 163 FGLAILLYRQRALGFGDILLAVLIGAMTGVGRVAPALFLGMVLAAAGGLLLMALGRR--- 219
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
++ IPYG + G ++
Sbjct: 220 -------------GRRDYIPYGAYLCAGTIVVLL 240
>gi|150403154|ref|YP_001330448.1| peptidase A24A prepilin type IV [Methanococcus maripaludis C7]
gi|150034184|gb|ABR66297.1| peptidase A24A prepilin type IV [Methanococcus maripaludis C7]
Length = 346
Score = 41.8 bits (97), Expect = 0.039, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + V+L+ ++ A +D+ +IP+ V I+ML L + ++ I
Sbjct: 1 MFGFDNLILGVYLLNFLLILTATFTDIKERIIPHFVIILMLIVNLPIGYY-FFGFDAIIS 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS------FLSFLFFVAILGG 114
++ I+ MGGGDVK+ T+ + F L + A+
Sbjct: 60 FFATLILCLILGV------GMGGGDVKMFTAISPIFAAETIYFVPKDILILIGLSALFAA 113
Query: 115 ILSVFILTVRMITNHIPIFGMFVP 138
I + + + IP
Sbjct: 114 IFPMTKILKNYWKDIIPSSAYLAM 137
>gi|149188866|ref|ZP_01867156.1| hypothetical protein VSAK1_05935 [Vibrio shilonii AK1]
gi|148837286|gb|EDL54233.1| hypothetical protein VSAK1_05935 [Vibrio shilonii AK1]
Length = 141
Score = 41.8 bits (97), Expect = 0.040, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 19/151 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
L+ F + A+ D I N + +V+L + + + L+V
Sbjct: 1 MYLLVLMFVCLVIAIVDFLYRKIHNYMLLVLLLVQCFLSPSD--------IQITTFLLVL 52
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
I ++ +G GD+K ++ +++ + G I + ++ +++ N
Sbjct: 53 GIGLLVYSLIWIGAGDIKYAAILSLAIPLDYLPWAYIITGFVGGIIAMTYWISKKILGNK 112
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ IPYGIAIS+G +
Sbjct: 113 Y-----------HKQEGIPYGIAISVGFYLV 132
>gi|323135888|ref|ZP_08070971.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242]
gi|322398979|gb|EFY01498.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242]
Length = 215
Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 20/146 (13%)
Query: 26 DLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC----FCFFAFNI 80
D+ +IP+ + + T + G I F
Sbjct: 82 DIRYFIIPDGPLWFLFAIGAATTLLGAPEETPDRLAAAATGYAALWIVDRAYERLRGFPG 141
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
+G D +L + +W G+ S L F + + +V +
Sbjct: 142 VGEADARLFAAAGLWLGFRG-LPSCLVFAVLSALVAAVLSI--------------REGSL 186
Query: 141 FLMKNKIPYGIAISMGGLISYPDSYL 166
+ IP+G +++G + + L
Sbjct: 187 QSAREPIPFGPHLALGLWLVWVLGPL 212
>gi|295107885|emb|CBL21838.1| Type IV leader peptidase family. [Ruminococcus obeum A2-162]
Length = 136
Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 2/132 (1%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L+F++ D+ I V+++ + + + G + +G+ +F
Sbjct: 7 LIFLLFSSFLDIRKREISIPVTLLFGLAGVAYSIKTGRTMTDYLIPAAIGIFIFACSIL- 65
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
+G GD LL + + + + + +L R
Sbjct: 66 -TRGQVGMGDGWLLMALGCMMRMESYIQTACIGMLLAAACSGILLLVFRKNKKTEIPLVP 124
Query: 136 FVPKSFLMKNKI 147
F+ ++ I
Sbjct: 125 FLLLGYVGGMVI 136
>gi|220927963|ref|YP_002504872.1| peptidase A24A prepilin type IV [Clostridium cellulolyticum H10]
gi|219998291|gb|ACL74892.1| peptidase A24A prepilin type IV [Clostridium cellulolyticum H10]
Length = 182
Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 18/157 (11%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
A + + AAL D+ S IP ++++ + + + L G E V +
Sbjct: 43 AAIGVLLTVQLLAALWDIKSMTIPAKITVPAMVAGAVIVALTGEFLEG--TAAAVLSFIL 100
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ + N +GGGD+ ++T T ++ + +S LF L G+ SV +
Sbjct: 101 MKLLAIISRNQVGGGDIAIMTVTGLYTSI-GALISILFASVTLSGVFSVIFIISGKA--- 156
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
K +IP+ I ++ Y+
Sbjct: 157 ------------DKKTEIPFAPFILTATVLLTLSGYV 181
>gi|32452621|gb|AAP43983.1| TadV [Aggregatibacter actinomycetemcomitans]
gi|109727127|gb|ABG45871.1| TadV [Aggregatibacter actinomycetemcomitans]
Length = 142
Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
A+ +I L+ +++D+ S +I NR+ + +L + + + + + ++ L
Sbjct: 7 ALVIITLSLLITLSITDIRSRLISNRIVLFLLFAIIPFSL-----LKYQTIFVMPALCTL 61
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
II F F+ +G GD+KL + + F F F G++ + L R
Sbjct: 62 IIGFLLFSLRFIGAGDIKLASVLMLAIPSGEVFSFFFFTTFAGLGLIIIGWLFFRK---- 117
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ +N +PYG+AIS+G +I
Sbjct: 118 -----------SIKENGLPYGVAISLGFMI 136
>gi|312793031|ref|YP_004025954.1| prepilin peptidase [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180171|gb|ADQ40341.1| Prepilin peptidase [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 261
Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 22/177 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---------YEL 57
+ + + + L++ D+ + I I++ + + +
Sbjct: 94 LEAVLLYLFYMVLLYIGAVDVRTKEISTISIILLGILKIGFVAVQTLSEGKHMSISGMVF 153
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+ ++ + + MG GDV LL + F W + L A+
Sbjct: 154 VLSGGILNSAFVALIWLLSKGKAMGFGDVLLLIAGGFGFDWKEMVVCNLLSFAVGALWSV 213
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
V+++ + K++IP+ I I+ + L
Sbjct: 214 VYLIKHGCGKSSF-------------KSEIPFAPFICFALFITTIWGKWLADLYINL 257
>gi|183983030|ref|YP_001851321.1| polyprenol-monophosphomannose synthase, Ppm1A [Mycobacterium
marinum M]
gi|183176356|gb|ACC41466.1| polyprenol-monophosphomannose synthase, Ppm1A [Mycobacterium
marinum M]
Length = 704
Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 10/124 (8%)
Query: 35 RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA--FNIMGGGDVKLLTST 92
R+ + ++ FL+ A ++ A+ + ++ + +G G V L
Sbjct: 123 RLVVSLVAGFLMYASFPPTNWWWAAI--VSVALLTWVLMHPTTTPVGGLGYGFVFGLACF 180
Query: 93 AVWFGWTPSF------LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNK 146
W + L A+ G+ + + VR + F + +K+
Sbjct: 181 VPLLPWIGTLVGPVPWLVLATTSALFPGLFGLSAVVVRRLPGWPIWFAVLWGAQEWLKSI 240
Query: 147 IPYG 150
+P+G
Sbjct: 241 VPFG 244
>gi|269793160|ref|YP_003318064.1| peptidase A24A domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100795|gb|ACZ19782.1| peptidase A24A domain protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 261
Score = 41.8 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 3/128 (2%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLVGLIVFI 70
+ +F A++DL S + + VS L+ L + L L G +
Sbjct: 111 WLMFLFGLFHAVTDLESGYVYDLVSASSFVCGLVLGGLTSGMYGVKGALLGALCGFLPLA 170
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+F MG GD L+ + G + L + I G + R+
Sbjct: 171 AIVVL-SFGRMGIGDGILMGGLGAFMGPFGALLGVYLGLFIGGLWAVGLLAIHRVGRKDP 229
Query: 131 PIFGMFVP 138
F+
Sbjct: 230 IPLAPFLW 237
>gi|238793620|ref|ZP_04637243.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC
29909]
gi|238727035|gb|EEQ18566.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC
29909]
Length = 154
Score = 41.8 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
SD+ + +I N+ I ++ S + + + + L ++ + F F ++
Sbjct: 33 VCYSDICNRIISNKFIISIIFSSIAWGYTTNSTVN-----ITIPLFSLLMGYIIFHFKLI 87
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
GGGDVKL+T+ + S ++ + G ++ + +L +
Sbjct: 88 GGGDVKLITALLLALTAEQSLDFIIYTAIMGGVVMIIGLLINK---------------HD 132
Query: 142 LMKNKIPYGIAISMGGLISYP 162
+ + +PY +AI+MG +S
Sbjct: 133 IQQRGVPYAVAITMGFALSLF 153
>gi|217423412|ref|ZP_03454913.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
gi|217393270|gb|EEC33291.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
Length = 135
Score = 41.8 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 2/113 (1%)
Query: 38 IVMLGSFLLTAFLLGMDYELIALHLL-VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWF 96
+V L + ++ + L G + + F FFA +MG DVK+ W
Sbjct: 2 LVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWC 61
Query: 97 GWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
G P+ ++ G+ ++ ++ + G + + PY
Sbjct: 62 GL-PALPRLWVVASVAAGVHALALMLLTRTPPGSLGRGGAPAFALGARRAAPY 113
>gi|217978826|ref|YP_002362973.1| peptidase A24A prepilin type IV [Methylocella silvestris BL2]
gi|217504202|gb|ACK51611.1| peptidase A24A prepilin type IV [Methylocella silvestris BL2]
Length = 179
Score = 41.8 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 2/129 (1%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+++ + LV +A+ D+ +IPN V++ + + A + + L + LLV
Sbjct: 6 IYAIPWTAALIVLVASAIRDVKDRIIPNE--YVVVIAVIGVAQCVALRPGLAWVSLLVAA 63
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ +N++GGGDVKL+++ + + + + G + +++
Sbjct: 64 GTLLGLGVLAHWNLIGGGDVKLISAVTLLVPPNQAPVLLIGIALAGGVLSCIYLAAHYGF 123
Query: 127 TNHIPIFGM 135
Sbjct: 124 RRTKLSQAG 132
>gi|153006808|ref|YP_001381133.1| peptidase A24A prepilin type IV [Anaeromyxobacter sp. Fw109-5]
gi|152030381|gb|ABS28149.1| peptidase A24A prepilin type IV [Anaeromyxobacter sp. Fw109-5]
Length = 173
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 1/123 (0%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D+ IPN V + + + + + ++ A L I + + + ++GGGD
Sbjct: 22 DVALRRIPNVVVVAVAAAGIASQAVVH-GMGNAASGLAAAGITAGVLWPAWKRRMVGGGD 80
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
+KL ++A W + F+ G + V + +
Sbjct: 81 LKLAAASAGWIALAGVPVYFVASALAAGMLAVVAYSASTLGARSAMRRNLVALALGSGSA 140
Query: 146 KIP 148
+P
Sbjct: 141 DLP 143
>gi|295106354|emb|CBL03897.1| Type II secretory pathway, prepilin signal peptidase PulO and
related peptidases [Gordonibacter pamelaeae 7-10-1-b]
Length = 288
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 10/182 (5%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
V + L+ +L DL + IPN I + ++ ++ G+D + L
Sbjct: 106 YGLTVHALALCALGCILLGLSLVDLETYTIPNGFIIAGIAAWAVSFAFYGVDLSAMGLGS 165
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW----------FGWTPSFLSFLFFVAIL 112
L+ ++G V G L F+ + +
Sbjct: 166 LMLAFAGSPLAAVLLDGLLGAFVVAGCLLALSLVFDKVMGRRSLGGGDVKLVFMVGLFLG 225
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ ++ ++ + P+G +I++ + +
Sbjct: 226 LAGSVLNLIVACVVGIVFAYATQKRRQDTNDPQAFPFGPSIALATWFTLALGPQLIAWYL 285
Query: 173 GL 174
GL
Sbjct: 286 GL 287
>gi|126701127|ref|YP_001090024.1| putative type IV prepilin leader peptidase [Clostridium difficile
630]
gi|115252564|emb|CAJ70407.1| putative type IV prepilin leader peptidase [Clostridium difficile]
Length = 220
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 15/156 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-FLLTAFLLGMDYELIALHLLVG 65
V +++ L+ ++ D ++ + + + + ++ + H+
Sbjct: 59 VECVQYMVLIPFLIIISIVDYYTIYVYDITIVSGIIVQGIIFLAFFNIAQFDYINHIFGL 118
Query: 66 LIVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI FII + +G GDV L + G F + + + +T
Sbjct: 119 LIGFIIPYIIAKLTKGLGYGDVGLYSLCCFALGNNYGFYVIVLSFILAFLFFIILYITK- 177
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
V K ++ +IP+ IS+ ++
Sbjct: 178 ------------VFKDVDIRKQIPFTPFISLSTILI 201
>gi|313682234|ref|YP_004059972.1| prepilin peptidase [Sulfuricurvum kujiense DSM 16994]
gi|313155094|gb|ADR33772.1| Prepilin peptidase [Sulfuricurvum kujiense DSM 16994]
Length = 249
Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 18/164 (10%), Positives = 44/164 (26%), Gaps = 21/164 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL---GMDYEL 57
+K + + L+ + D M+P+ +++ L + + L G +
Sbjct: 89 LKFGLTFQALGIAVTFDFLLALSAIDYRYKMVPDSLNLGALTVAVFSVTSLESLGYNVTN 148
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
L ++ MG D+ + + G + + L
Sbjct: 149 ALLFAGGFSLLRFYISYIIKKEAMGEADIMIAATMGALLGIKLGLAAVFLGAVLALPALI 208
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ ++P+ ++MG I
Sbjct: 209 L------------------TRDETEESKELPFIPFLAMGCWIVL 234
>gi|227495464|ref|ZP_03925780.1| prepilin peptidase [Actinomyces coleocanis DSM 15436]
gi|226831011|gb|EEH63394.1| prepilin peptidase [Actinomyces coleocanis DSM 15436]
Length = 226
Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 24/156 (15%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-----GMDYELIALHLLVGLIVFII- 71
L +A DL +PNR++ + L FLL L + + G +V+ +
Sbjct: 85 VLALSAYVDLAVHKLPNRLTFLALVIFLLGLGLRLIILPFENPLPFIASAVFGALVWGLP 144
Query: 72 -CFCFFAFNIMGGGDVKLLTSTAVWFGWTP--SFLSFLFFVAILGGILSVFILTVRMITN 128
++ +G GDVKL W G + L ++GG ++++++TV+
Sbjct: 145 PALIYYLMKGIGFGDVKLAPVLGAWLGLYGFETAYVGLTVAFLIGGAVALYLVTVKKQ-- 202
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
MK +I +G + +G + + +
Sbjct: 203 -------------AMKTRIAFGPFLILGACLVWALT 225
>gi|266621099|ref|ZP_06114034.1| peptidase A24A, prepilin type IV [Clostridium hathewayi DSM 13479]
gi|288867255|gb|EFC99553.1| peptidase A24A, prepilin type IV [Clostridium hathewayi DSM 13479]
Length = 174
Score = 41.4 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 7/140 (5%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI-- 70
+I L A D+ IPN V +L + + A +L +
Sbjct: 1 MILLLVLAAGAYYDVREHRIPNWWVAVSAVCGILLSMVESGAPPGPAAYLKECGLFLARM 60
Query: 71 -----ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F F ++G GD+KL + G+ + I + ++
Sbjct: 61 LTVSALFFPLFICRMIGAGDIKLAALICGYSGFAGGASAIGLGFLIGAFWSFLKMMVKGS 120
Query: 126 ITNHIPIFGMFVPKSFLMKN 145
++ + + K
Sbjct: 121 FHERFCHLAAYIRRIYHTKT 140
>gi|255308534|ref|ZP_05352705.1| putative type IV prepilin leader peptidase [Clostridium difficile
ATCC 43255]
Length = 216
Score = 41.4 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 53/156 (33%), Gaps = 15/156 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-FLLTAFLLGMDYELIALHLLVG 65
V +++ L+ ++ D ++ + + + + ++ + H+
Sbjct: 55 VECVQYMVLIPFLIIISIVDYYTIYVYDITIVSGIIVQGIIFLVFFNIVQFDYINHIFGL 114
Query: 66 LIVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI FII + +G GDV L + G F + + + +T
Sbjct: 115 LIGFIIPYIIAKLTKGLGYGDVGLYSLCCFALGNNYGFYVIVLSFILAFLFFIILYITK- 173
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K ++ +IP+ IS+ ++
Sbjct: 174 ------------IFKDVDIRKQIPFTPFISLSTILI 197
>gi|134298676|ref|YP_001112172.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
gi|134051376|gb|ABO49347.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
Length = 166
Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V +I F L A D+ IP+ I++L + + + + + + + L++F
Sbjct: 1 MVSMIVIFSLALTAYIDIKKREIPHISVILLLCLGIYLHWQEPLFFLIGIFSMFIPLLLF 60
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ +G GD+KL G L F
Sbjct: 61 SLV-----TGSLGEGDIKLFAVMGGIMGIMDCLLFF 91
>gi|149185490|ref|ZP_01863806.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21]
gi|148830710|gb|EDL49145.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21]
Length = 163
Score = 41.4 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 1/130 (0%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+A F AL D+ + +PN + +ML + L AF+ G + +AL L
Sbjct: 6 AAAWFGALGILASAGALLDVCTRKLPNILCAIMLATGLTFAFVGG-GWPALALGLAHVAA 64
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F++ + F+ G GD K T+TA +F F+ +L V++ R +
Sbjct: 65 AFLLGYLFYLVGTFGAGDAKFYTATAGFFPLWDMLGLFVAITGAGFLLLLVWVFMKRSLR 124
Query: 128 NHIPIFGMFV 137
F
Sbjct: 125 TRPKDRSDFA 134
>gi|207739461|ref|YP_002257854.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
gi|206592837|emb|CAQ59743.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
Length = 154
Score = 41.4 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 39/136 (28%), Gaps = 10/136 (7%)
Query: 33 PNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFIICFCFFAFNIMGGGDVKLLT 90
PN + V L + + L G I +A MG GDVK T
Sbjct: 2 PNWLVAVGLVLSIALVKFGTVMALAYDWRDVWLGGAIALAGFLPLYALGWMGAGDVKFFT 61
Query: 91 STAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI--------FGMFVPKSFL 142
+ GW +L + G +L R +
Sbjct: 62 VAGLLAGWHGLVAIWLVSSVLAGVHALAILLLRRADASAPSAWMLMRVCPALARWDPGHA 121
Query: 143 MKNKIPYGIAISMGGL 158
+ IPY +++G L
Sbjct: 122 GRRGIPYAAYMAIGLL 137
>gi|150400704|ref|YP_001324470.1| peptidase A24B, FlaK-like protein [Methanococcus aeolicus
Nankai-3]
gi|150013407|gb|ABR55858.1| Peptidase A24B, FlaK-like protein [Methanococcus aeolicus
Nankai-3]
Length = 234
Score = 41.4 bits (96), Expect = 0.050, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGL 66
++ L+ A++ D+ S I + + I M+ L+ L M + +
Sbjct: 2 VTYIFGLIGLLVASIQDIKSREIEDYIWISMVIFGLIYNIYLSMATGNYFFIINSIFGFI 61
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTA 93
I F++ + F F +GGGD K+L
Sbjct: 62 ICFVLGYLMFLF-GVGGGDGKVLIGMG 87
>gi|170723750|ref|YP_001751438.1| peptidase A24A prepilin type IV [Pseudomonas putida W619]
gi|169761753|gb|ACA75069.1| peptidase A24A prepilin type IV [Pseudomonas putida W619]
Length = 156
Score = 41.4 bits (96), Expect = 0.050, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 45/150 (30%), Gaps = 4/150 (2%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L D+ I + +++ + L+ F G + + ++
Sbjct: 4 IVLLMWLALCTEQDIRERQIADVLTLGVAAGALIWLFFTGHTWIGADASDAGWALAIVML 63
Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ G DVKL+ + A+ +F+ + L + +
Sbjct: 64 LTLPGYMLGHFGADDVKLMGALALATSHQYVLGTFIGAGVSVLLWLLTRRRLWTLFNPKV 123
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + K + + G L++
Sbjct: 124 KKRLQALTEQMGDKQA--FVPYVLAGFLLT 151
>gi|255102713|ref|ZP_05331690.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-63q42]
Length = 216
Score = 41.4 bits (96), Expect = 0.051, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 15/156 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-FLLTAFLLGMDYELIALHLLVG 65
V +++ L+ ++ D ++ + + + + ++ + H+
Sbjct: 55 VECVQYMVLIPFLIIISIVDYYTIYVYDITIVSGIIVQGIIFLAFFNIAQFDYINHIFGL 114
Query: 66 LIVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI FII + +G GDV L + G F + + + +T
Sbjct: 115 LIGFIIPYIIAKLTKGLGYGDVGLYSLCCFALGNNYGFYVIVLSFILAFLFFIILYITK- 173
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
V K ++ +IP+ IS+ ++
Sbjct: 174 ------------VFKDVDIRKQIPFTPFISLSTILI 197
>gi|145640233|ref|ZP_01795817.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae R3021]
gi|145274819|gb|EDK14681.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae 22.4-21]
Length = 230
Score = 41.4 bits (96), Expect = 0.051, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 27/162 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLV 64
+F+ + L + D +I + +L L A +
Sbjct: 84 IFAIWLGLTLLILWAISYLDWHYQLISTTPCLWLLTIGLFGADNNFSLLTLSESIKSAAS 143
Query: 65 GLIVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
IVF + + G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYAIYWLAKCYYRKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI- 201
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
K IP+ +++ +I Y
Sbjct: 202 -------------------HRKKKEFIPFAPFMNLSAVIIYF 224
>gi|145632540|ref|ZP_01788274.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae 3655]
gi|229844998|ref|ZP_04465135.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae 6P18H1]
gi|144986735|gb|EDJ93287.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae 3655]
gi|229812132|gb|EEP47824.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae 6P18H1]
Length = 230
Score = 41.4 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 27/162 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLV 64
+F+ + L + D +I + +L L A +
Sbjct: 84 IFTVWIGLTLIILWTISYLDWHYQLISTTPCLWLLTLGLFGADNNFSLLTLSESIKSAAS 143
Query: 65 GLIVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
IVF + + G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYAIYWIAKCYYRKEAFGRGDYWLAMALGSFIRLE-TLPHFLLLASVLGICFSLI- 201
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
K IP+ +++ +I Y
Sbjct: 202 -------------------HKKKKEFIPFAPFMNLSAVIIYF 224
>gi|303247222|ref|ZP_07333496.1| Prepilin peptidase [Desulfovibrio fructosovorans JJ]
gi|302491381|gb|EFL51269.1| Prepilin peptidase [Desulfovibrio fructosovorans JJ]
Length = 257
Score = 41.4 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 21/166 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFII 71
L + A+ DL ++P+ ++ + G+ + G VF +
Sbjct: 107 LALGGLYIVASGIDLQVYLLPDVLTYPAAVLGIAMGILHPGIGLWPALIGAAAGFGVFWL 166
Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + +GGGDVKL+ S G + L FIL
Sbjct: 167 LAAGYRLAKGVDGLGGGDVKLMLSIGGVVGVLGLPYAVLIGSVAALAASPFFILGRGR-- 224
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
IP+G + G ++ L G
Sbjct: 225 --------------ERSMPIPFGPFLCFGAMVQMLYGPTIFRLLTG 256
>gi|226311415|ref|YP_002771309.1| peptidase A24A family protein [Brevibacillus brevis NBRC 100599]
gi|226094363|dbj|BAH42805.1| peptidase A24A family protein [Brevibacillus brevis NBRC 100599]
Length = 186
Score = 41.4 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 1/94 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+I ++ + D IPNR + L E + L L +
Sbjct: 47 MILFVLCLYLSWVDFHHRRIPNRALVAGFVLISFLELALSSPMEWLMAGLFAILSSLVFG 106
Query: 73 FC-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ ++ +G GDVKL G +
Sbjct: 107 WISYYKPLALGMGDVKLFALVCYGLGIRDFVVVL 140
>gi|156743355|ref|YP_001433484.1| peptidase A24A domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156234683|gb|ABU59466.1| peptidase A24A domain protein [Roseiflexus castenholzii DSM 13941]
Length = 254
Score = 41.4 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 20/156 (12%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L+ D +I ++ + AF++ L AL L+ + + F
Sbjct: 101 VVAAVLIVTGAIDWQHRLIYTLPTLSATLAATAVAFVVPFHSVLNALAGLLIAGILFVIF 160
Query: 74 CFFAFNIM-------GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
A + G GDV L G T + L+ + + G ++ ++ R
Sbjct: 161 YVLARALFPAHRAPFGLGDVYLGMFIGAALGLTNLPGALLYGMLLAGAFSAILMILRRFG 220
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
P I YG + +G LI
Sbjct: 221 KRDTP-------------QYISYGTFLCIGALIYLI 243
>gi|68248898|ref|YP_248010.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae 86-028NP]
gi|59939221|gb|AAX12380.1| PilD [Haemophilus influenzae]
gi|68057097|gb|AAX87350.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae 86-028NP]
Length = 230
Score = 41.4 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 27/162 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLV 64
+F+ + L + D +I + +L L A +
Sbjct: 84 IFTVWIGLTLIILWTISYLDWHYQLISTTPCLWLLTLGLFGADNNFSLLTLSESIKSAAS 143
Query: 65 GLIVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
IVF + + G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYAIYWIAKCYYRKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI- 201
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
K IP+ +++ +I Y
Sbjct: 202 -------------------HKKKKEFIPFAPFMNLSAIIIYL 224
>gi|300856055|ref|YP_003781039.1| putative type IV leader peptidase [Clostridium ljungdahlii DSM
13528]
gi|300436170|gb|ADK15937.1| putative type IV leader peptidase [Clostridium ljungdahlii DSM
13528]
Length = 198
Score = 41.4 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 18/134 (13%)
Query: 29 SAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKL 88
+IP+ + I+ L ++ F + + L ++ G + N+MGGGD+KL
Sbjct: 80 YRIIPDFMVIITLIMGIMLPFFIRSSFIDTILGMIFGGGTMFLLSLV--PNVMGGGDIKL 137
Query: 89 LTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIP 148
+ + + G + + + + + IL K+ IP
Sbjct: 138 MFAIGSFLGLKKTLWAIFLAFVLSSIVGIILILFKVK----------------GTKDYIP 181
Query: 149 YGIAISMGGLISYP 162
+G +S+G IS
Sbjct: 182 FGPFLSLGSFISLL 195
>gi|238562620|ref|ZP_04610142.1| peptidase A24A, prepilin type IV [Burkholderia mallei GB8 horse 4]
gi|238522206|gb|EEP85652.1| peptidase A24A, prepilin type IV [Burkholderia mallei GB8 horse 4]
Length = 135
Score = 41.4 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 2/113 (1%)
Query: 38 IVMLGSFLLTAFLLGMDYELIALHLL-VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWF 96
+V L + ++ + L G + + F FFA +MG DVK+ W
Sbjct: 2 LVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWC 61
Query: 97 GWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
G + + ++ G+ ++ ++ + G + + PY
Sbjct: 62 GLS-ALPRLWVVASVAAGVHALALMLLTRTPPGSLGRGGAPAFALGARRAAPY 113
>gi|126725978|ref|ZP_01741820.1| peptidase A24A, prepilin type IV [Rhodobacterales bacterium
HTCC2150]
gi|126705182|gb|EBA04273.1| peptidase A24A, prepilin type IV [Rhodobacterales bacterium
HTCC2150]
Length = 177
Score = 41.4 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 5/152 (3%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ + ++ + SDL +IPN+ I +L FL+ Y A +IV +
Sbjct: 26 LLPLAIPICIWVSWSDLKFMLIPNKAVIALLIVFLIMGLFAFSPYF-YAWRWSHFVIVLV 84
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ A + G GD K + A + L L F AIL + +
Sbjct: 85 LGIVINAAGLAGAGDAKYAAAMAPFIARADLLLIILLFAAILPAAYVTHRIFR---SIPA 141
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
KS+ K P G A++ G L++Y
Sbjct: 142 VKKTAGDWKSWGEVRKFPMGFALA-GTLLAYL 172
>gi|90424506|ref|YP_532876.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
BisB18]
gi|90106520|gb|ABD88557.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
BisB18]
Length = 170
Score = 41.4 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 9/129 (6%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-----YELIALHLLVGLIVF 69
++ A+ D +IP+ ++ L ++ A + G D L +V ++F
Sbjct: 19 LALIMLAIAVVDRRRFIIPDVLTATALALGIVNAIVAGRDDAGAALVDATLRAMVLGLMF 78
Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ +A +G GDVKL +W GW+ ++ + + +R
Sbjct: 79 LSLRMIYARLRGRQGIGLGDVKLAAVAGLWLGWSTMPIAVEIAAVSALMVYAARRYILRH 138
Query: 126 ITNHIPIFG 134
Sbjct: 139 AVRRSSRLP 147
>gi|323694366|ref|ZP_08108539.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum
WAL-14673]
gi|323501606|gb|EGB17495.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum
WAL-14673]
Length = 180
Score = 41.4 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 8/145 (5%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII- 71
L +AL D +PN + + +F + F+ G + + + +F I
Sbjct: 4 FFLLSFLTGSALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIR 63
Query: 72 -------CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F F F +MG GD+K++ A + G + +A ++L
Sbjct: 64 TFFTVIIFFPLFLFRMMGAGDIKVMAVIAGYMGMDRGVEIIFYGLAAAAVWSLFYMLKQH 123
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
++ I F ++ F + +PY
Sbjct: 124 ILAERIKYFLNYIKHLFQSEQILPY 148
>gi|16803590|ref|NP_465075.1| hypothetical protein lmo1550 [Listeria monocytogenes EGD-e]
gi|224501510|ref|ZP_03669817.1| hypothetical protein LmonFR_03167 [Listeria monocytogenes FSL
R2-561]
gi|16410979|emb|CAC99628.1| comC [Listeria monocytogenes EGD-e]
Length = 236
Score = 41.4 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++ I + L F ++D+F +PN + IV A L + + + +
Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQSLMDLIYSGGISCLFY 157
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ F F +G GD+K+L + + G+ + F + + IL ++ ++ N
Sbjct: 158 LLFFIIFRK-GIGLGDIKILIILSTFLGFKIGYYIFFLAIIMGTIILLTALMLKKVKKNK 216
>gi|15669092|ref|NP_247897.1| hypothetical protein MJ_0902 [Methanocaldococcus jannaschii DSM
2661]
gi|3024921|sp|Q58312|Y902_METJA RecName: Full=Uncharacterized protein MJ0902
gi|1591577|gb|AAB98907.1| hypothetical protein MJ_0902 [Methanocaldococcus jannaschii DSM
2661]
Length = 238
Score = 41.4 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--IALHLLVGLIVF 69
F++ L+ A++ DL S I + V + M+ L+ L + +VG IV
Sbjct: 8 FIVGAIGLLIASIYDLKSREIEDYVWVSMVIFGLIYNGYLSFISHDMLYVIQSIVGFIVC 67
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
F +GGGD KL+ + +
Sbjct: 68 FFLGFFMFLLGVGGGDGKLIMGLGALIPKYNMPIHTPLGAIL 109
>gi|84515632|ref|ZP_01002994.1| hypothetical protein SKA53_03201 [Loktanella vestfoldensis SKA53]
gi|84510915|gb|EAQ07370.1| hypothetical protein SKA53_03201 [Loktanella vestfoldensis SKA53]
Length = 151
Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 1/141 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + L+ A + ++ +PN ++++ F+ L+
Sbjct: 1 MAAYAPFLMSLILIAAMVIEMRDGRLPNLLTMLPFVVFMALIVTAPDPAVFAG-RLVGAA 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+VF++ FA G G VKLLT A++ + +F F+ + + + +
Sbjct: 60 MVFVVGLVLFAVAGFGAGAVKLLTGLALFIPPEDALATFAIFIVTMFAGTFIILQLHKRF 119
Query: 127 TNHIPIFGMFVPKSFLMKNKI 147
+ + + M I
Sbjct: 120 AAQGSKWVILNKRVLPMSLPI 140
>gi|303239389|ref|ZP_07325917.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
gi|302593175|gb|EFL62895.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
Length = 140
Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 54 DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
Y+ + LL +I I+ +A ++G GD+KL ++ FG F + + + I G
Sbjct: 9 GYKGLLDALLGTVIPIILLIVLYALRMLGAGDIKLFSALGAIFGVEYIF-AIMGYSFIAG 67
Query: 114 GILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
GI++ + + + K +
Sbjct: 68 GIIASGFIIAKRNSKDRARHLFNYFKLVFLTQSF 101
>gi|290559758|gb|EFD93082.1| peptidase A24A prepilin type IV [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 276
Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML---GSFLLTAFLLGMDYELIALHLL 63
+ +F+ L+ A+++D+ +P+ +S V++ +L + + L
Sbjct: 5 INYLIFIFVIGVLILASITDIKKREVPDSISYVLIAGSSLLVLAYSISNNTISNLVYMPL 64
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG-----WTPSFLSFLFFVAILGGILSV 118
L+V + + GGGDVK+L ++ F SF++ + + GGI +
Sbjct: 65 SILLVTGFSYFMYKAGQWGGGDVKILFGISIVFTSINLFSNRSFIALFINILLFGGIYGI 124
Query: 119 F 119
Sbjct: 125 L 125
>gi|315303312|ref|ZP_07873945.1| type IV leader peptidase family protein [Listeria ivanovii FSL
F6-596]
gi|313628327|gb|EFR96827.1| type IV leader peptidase family protein [Listeria ivanovii FSL
F6-596]
Length = 201
Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ + L F ++D+ +PN + I+ + L FL + +++ +I + + F
Sbjct: 67 VIYYFLAFFVITDILYMHVPNSIIILFSVTMLFIYFLFHQPLLNLVYSIIMSIIFYGLFF 126
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
F +G GD+KL + + G+ + F + +L + + ++ N F
Sbjct: 127 FVFRK-GIGLGDIKLFIILSTFLGFQTGYFLFFLSILAGTIVLLIAVAAKKIKKNKQVPF 185
Query: 134 GMFVPKSF 141
++ SF
Sbjct: 186 VPYIFTSF 193
>gi|310830512|ref|YP_003965613.1| hypothetical protein PPSC2_p0152 [Paenibacillus polymyxa SC2]
gi|309249979|gb|ADO59545.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 153
Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V ++ L A + D+ IPN++++ + L+ + + ++ + + I
Sbjct: 23 VAMLFTLYLFIATIIDVKLRKIPNKLNLAFVLVRLILIPWFPLSILDLLGAIIAFIALLI 82
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
GD+K+ ++ G + L +
Sbjct: 83 PAMVKNHKMG---GDIKMAGVVGLYMGLYLVPIFILLACIYFMVYVG 126
>gi|261402230|ref|YP_003246454.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus vulcanius
M7]
gi|261369223|gb|ACX71972.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus vulcanius
M7]
Length = 237
Score = 41.0 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLLVGLIV 68
+LI L+ A++ DL I + + I + L ++ I ++ LI
Sbjct: 5 YLIGLVGLIIASICDLKDREINDCIWIFITIFGFLYWGYFSFLMHNFIYIGYSVVGFLIC 64
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104
F I + F F +GGGD KLL +
Sbjct: 65 FAIGYIMFLF-GVGGGDGKLLMGLGALIPKYKMPIF 99
>gi|237733164|ref|ZP_04563645.1| predicted protein [Mollicutes bacterium D7]
gi|229383708|gb|EEO33799.1| predicted protein [Coprobacillus sp. D7]
Length = 182
Score = 41.0 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 1/139 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ + ++ + F + D+ PN + I++L + F + + + L +
Sbjct: 1 MLSTIFLILSLIAMFFGVIVDIKEKKFPNYIVIILLLLGMFY-FCQTNSIKELIVPLCLF 59
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
++ I ++ GD+K + + W+P F+ ++ V I R
Sbjct: 60 VLFNFIGIYLHKIKLVAPGDMKFFSLFPFFIVWSPKTSIIFIFILAFISMIYVSIRIFRK 119
Query: 126 ITNHIPIFGMFVPKSFLMK 144
+ IF F + F +K
Sbjct: 120 EKSLKSIFTNFKNQIFELK 138
>gi|303243575|ref|ZP_07329917.1| Peptidase A24B, FlaK domain protein [Methanothermococcus
okinawensis IH1]
gi|302486136|gb|EFL49058.1| Peptidase A24B, FlaK domain protein [Methanothermococcus
okinawensis IH1]
Length = 231
Score = 41.0 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI--ALHLLVGLIVFIICFCFF 76
L+ A++ D S I + + + M+ L L + + + GL+V I
Sbjct: 11 LLLASIQDFRSREIEDYIWVSMVVFGLGYHTYLSITTGNYYYLISSVSGLVVCFILGYLM 70
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+GGGD K+L + F +
Sbjct: 71 FLCGVGGGDGKVLMGMGALTPKYNMPIYSTFGSIL 105
>gi|319941904|ref|ZP_08016225.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis
3_1_45B]
gi|319804557|gb|EFW01427.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis
3_1_45B]
Length = 151
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
+ SDL IPN ++++ + ++ A++ G + L + I+ + ++G
Sbjct: 26 SWSDLTKREIPNAAAVLLGLTAVVDAWIGGSPLQAGWLGCIS--ILLVGFPVSAYLGLIG 83
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
GD+KLL + A+W L L A GG+L++ L + ++
Sbjct: 84 AGDIKLLAAAALWTSART--LDLLLITAWAGGVLALLYLCLNLVRTR------------- 128
Query: 143 MKNKIPYGIAISMGGLISY 161
+IPYG+A+S+ L+
Sbjct: 129 RTTEIPYGVAVSLSLLLML 147
>gi|226196296|ref|ZP_03791878.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
Pakistan 9]
gi|254188720|ref|ZP_04895231.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
52237]
gi|157936399|gb|EDO92069.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
52237]
gi|225931513|gb|EEH27518.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
Pakistan 9]
Length = 159
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 9/148 (6%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ + L AL+DL + + ++ + A A H +G F +
Sbjct: 7 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 66
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + GGDVKL +W G ++ + +V I R+
Sbjct: 67 AAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRVPRVLAW- 125
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F +PYG+A++ GGL++
Sbjct: 126 --------FAPARGVPYGVALAAGGLLA 145
>gi|254179874|ref|ZP_04886473.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
gi|184210414|gb|EDU07457.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
Length = 159
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ + L AL+DL + + ++ + A A H +G F +
Sbjct: 7 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 66
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + GGDVKL +W G ++ + +V I R
Sbjct: 67 AAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRAPRVLAW- 125
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F +PYG+A++ GGL++
Sbjct: 126 --------FAPARGVPYGVALAAGGLLA 145
>gi|154174503|ref|YP_001408139.1| peptidase A24 N- domain-containing protein [Campylobacter curvus
525.92]
gi|153793104|gb|EAU00185.2| bacterial Peptidase A24 N- domain family [Campylobacter curvus
525.92]
Length = 265
Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 37/125 (29%), Gaps = 6/125 (4%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--I 58
+ + + + + L+ +L D+ +P+ + LG L+ A + +
Sbjct: 105 LNIQTLASAVLLGLCFIMLLALSLIDIKFKAVPDVLLFAALGFALIYAACEILWFGDFSA 164
Query: 59 ALHLLVGLIVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
++ F + MG D+ + + + +
Sbjct: 165 FINACGFAFGFWLLRLIVSAAMKKEAMGSADIFIAAIIGAVLPLKLALFAVYLAAILTLP 224
Query: 115 ILSVF 119
+ ++
Sbjct: 225 VYALV 229
>gi|323495635|ref|ZP_08100706.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326]
gi|323319270|gb|EGA72210.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326]
Length = 134
Score = 41.0 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 17/145 (11%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
+ +DL ++ N+ +++ G + F +HL+ +V I C
Sbjct: 1 MTTICLSIGWNDLQHRVVKNKSVLLLAGILAFSIF-----LFDSKIHLIQASLVLISGMC 55
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+ + G GD+KL + A++ S L + I G +++L +
Sbjct: 56 LWKVGVFGAGDIKLASVFAIFIAPDYSLLVLFLMLVIGGVEALLYLLIRTTYPH------ 109
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLI 159
+ IP+ I I + G
Sbjct: 110 ------LIRHGGIPFAIPIVISGFF 128
>gi|326205018|ref|ZP_08194868.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
2782]
gi|325984823|gb|EGD45669.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
2782]
Length = 184
Score = 41.0 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 18/158 (11%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+A + + AAL D+ IP ++++ L + + L G E +A ++ +++
Sbjct: 42 AAAIEVLLIVQLLAALWDINDMTIPLKITVPALSAGVGIVALTGRFSEGMAASIVAFILM 101
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ + N +GGGD+ ++T T ++ G + V + G ++FIL +
Sbjct: 102 KLLTII--SRNQVGGGDIAIMTVTGLYTGISTLISILFTAVTLAGIFSTIFILCGK---- 155
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
K +IP+ I ++ Y+
Sbjct: 156 ------------AHKKTEIPFAPFILSATVMLILIGYV 181
>gi|319775835|ref|YP_004138323.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae F3047]
gi|319896629|ref|YP_004134822.1| type 4 prepilin-like protein specific leader peptidase [Haemophilus
influenzae F3031]
gi|317432131|emb|CBY80482.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae F3031]
gi|317450426|emb|CBY86642.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae F3047]
Length = 230
Score = 41.0 bits (95), Expect = 0.064, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 27/167 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ F + L + D +I + + +L L A L + A
Sbjct: 84 IFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAAS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V ++ I ++ G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYAIYWIAKFYYGKEAFGRGDYWLAMALGSFIQLE-TLPHFLLLASVLGICFSLI- 201
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
K IP+ +++ +I Y Y +
Sbjct: 202 -------------------HKKKKEFIPFAPFMNLSAVIIYFVKYYW 229
>gi|45357795|ref|NP_987352.1| hypothetical protein MMP0232 [Methanococcus maripaludis S2]
gi|45047355|emb|CAF29788.1| Conserved Hypthetical Protein [Methanococcus maripaludis S2]
Length = 346
Score = 41.0 bits (95), Expect = 0.064, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + V+L ++ A +D+ +IP+ V I+ML L + ++ I
Sbjct: 1 MFGFDNLILGVYLFNFLLILTATYTDIKERIIPHFVIILMLIVNLPIGYY-FFGFDAITS 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
++ I+ MGGGDVK+ T+ + F + ++G
Sbjct: 60 FFATLILCLILGV------GMGGGDVKMFTALSPLFAAETIYFVPKDISILIGLSALFAA 113
Query: 121 LT 122
+
Sbjct: 114 IF 115
>gi|329123679|ref|ZP_08252239.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Haemophilus aegyptius ATCC 11116]
gi|327469878|gb|EGF15343.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Haemophilus aegyptius ATCC 11116]
Length = 230
Score = 41.0 bits (95), Expect = 0.064, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 27/167 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ F + L + D +I + + +L L A L + A
Sbjct: 84 IFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAAS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V ++ I ++ G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYAIYWIAKFYYGKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI- 201
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
K IP+ +++ +I Y Y +
Sbjct: 202 -------------------HKKKKEFIPFAPFMNLSAVIIYFVKYYW 229
>gi|254977128|ref|ZP_05273600.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-66c26]
gi|255094457|ref|ZP_05323935.1| putative type IV prepilin leader peptidase [Clostridium difficile
CIP 107932]
gi|255316208|ref|ZP_05357791.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-76w55]
gi|255518870|ref|ZP_05386546.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-97b34]
gi|255652049|ref|ZP_05398951.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-37x79]
gi|260685023|ref|YP_003216308.1| putative type IV prepilin leader peptidase [Clostridium difficile
CD196]
gi|260688681|ref|YP_003219815.1| putative type IV prepilin leader peptidase [Clostridium difficile
R20291]
gi|306521786|ref|ZP_07408133.1| putative type IV prepilin leader peptidase [Clostridium difficile
QCD-32g58]
gi|260211186|emb|CBA66660.1| putative type IV prepilin leader peptidase [Clostridium difficile
CD196]
gi|260214698|emb|CBE07350.1| putative type IV prepilin leader peptidase [Clostridium difficile
R20291]
Length = 216
Score = 41.0 bits (95), Expect = 0.064, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 53/156 (33%), Gaps = 15/156 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-FLLTAFLLGMDYELIALHLLVG 65
V +++ L+ ++ D ++ + + + + ++ + H+
Sbjct: 55 VECVQYMVLIPFLIIISIVDYYTIYVYDITIVSGIIVQGIIFLAFFNIAQFDYINHIFGL 114
Query: 66 LIVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
LI FII + +G GDV L + G F + + + +T
Sbjct: 115 LIGFIIPYIIAKLTKGLGYGDVGLYSLCCFALGNNYGFYVIVLSFILAFLFFIILYITK- 173
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K ++ +IP+ IS+ ++
Sbjct: 174 ------------IFKDVDIRKQIPFTPFISLSTILI 197
>gi|134046468|ref|YP_001097953.1| peptidase A24-like protein [Methanococcus maripaludis C5]
gi|132664093|gb|ABO35739.1| Peptidase A24-like protein [Methanococcus maripaludis C5]
Length = 346
Score = 41.0 bits (95), Expect = 0.064, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + V+L ++ A +D+ +IP+ V I+ML L + L ++ I
Sbjct: 1 MFGIDNLILGVYLFNFLLILTATFTDIKERIIPHFVIILMLIVNLPVGYYL-FGFDAITS 59
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS------FLSFLFFVAILGG 114
++ I+ MGGGDVK+ T+ + F L + A+
Sbjct: 60 FFATLILCLILGV------GMGGGDVKMFTALSPIFTAETIYFVPKDILILIGLSALFAA 113
Query: 115 ILSVFILTVRMITNHIPIFGMFVP 138
I + + + IP
Sbjct: 114 IFPMTKILKNYWKDIIPSSAYLAM 137
>gi|170724968|ref|YP_001758994.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908]
gi|169810315|gb|ACA84899.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908]
Length = 164
Score = 41.0 bits (95), Expect = 0.064, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 14/135 (10%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+D+ I N + + L+ L +L+ L G ++F + F F + G
Sbjct: 17 TDICKRRISN----IGCFATLIICVWLAASQQLLIEGFLTGSLIFALSLVLFRFRWLAAG 72
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
D KL ++ AV + L I GG+L+V L + IP
Sbjct: 73 DGKLASALAVALPLSQ-LPVALMLTLICGGVLAVIYLIKYRVIQKIPRGEDL-------- 123
Query: 145 NKIPYGIAISMGGLI 159
+PYGIAIS+G I
Sbjct: 124 -GLPYGIAISLGFYI 137
>gi|302872316|ref|YP_003840952.1| Prepilin peptidase [Caldicellulosiruptor obsidiansis OB47]
gi|302575175|gb|ADL42966.1| Prepilin peptidase [Caldicellulosiruptor obsidiansis OB47]
Length = 258
Score = 41.0 bits (95), Expect = 0.065, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 16/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFS--AMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHL 62
V + + + L++ ++ D + + + + + +L + + + L
Sbjct: 95 VSAFLLFLIGCILIYISVVDFKTYEMSVTSILLLAILKFGFEVSLKGVLKTSMTFVVLGP 154
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ ++ + + N MG GDV LL + V F + + + + L
Sbjct: 155 ILNALLVGLIYLITRGNAMGLGDVLLLMAGGVGFTVRQAIVCNFVAFLVAFLYVLGLKLV 214
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K K +IP+G IS+G +S
Sbjct: 215 ------------QSILKGNEKKREIPFGPFISIGIFVS 240
>gi|189016758|ref|YP_001711797.1| hypothetical protein CMS_pCSL0068 [Clavibacter michiganensis subsp.
sepedonicus]
gi|167728929|emb|CAQ03311.1| putative membrane protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 209
Score = 41.0 bits (95), Expect = 0.068, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLLVGLI 67
+ +I A+ D+ + +PNR+ + L+ A LG+ D + L I
Sbjct: 63 LVVIVAAFAGTLAVIDVRTLRLPNRLVGPLAVVGLVQAIGLGILTGDATQALVPLGAAGI 122
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
++ MG GDVK + A+ + +
Sbjct: 123 TSLLYLGCCLAKWMGYGDVKYAGALALSIAIYAGWAAIYLL 163
>gi|260582605|ref|ZP_05850395.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
NT127]
gi|260094416|gb|EEW78314.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
NT127]
Length = 230
Score = 41.0 bits (95), Expect = 0.068, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 51/167 (30%), Gaps = 27/167 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ + L + D +I + +L L A L + A
Sbjct: 84 IFAIWLGLTLLILWAISYLDWHYQLISTTPCLWLLTLGLFGADNNFSLLTLSESIKSAAS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V ++ I ++ G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYTIYWIAKFYYGKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI- 201
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
K IP+ +++ +I Y Y +
Sbjct: 202 -------------------HKKKKEFIPFAPFMNLSAVIIYFVKYYW 229
>gi|148253066|ref|YP_001237651.1| hypothetical protein BBta_1528 [Bradyrhizobium sp. BTAi1]
gi|146405239|gb|ABQ33745.1| putative membrane protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 184
Score = 41.0 bits (95), Expect = 0.068, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 3/131 (2%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M +V + L +A DL +IPN + + + L +
Sbjct: 1 MSLLFLVHAICQPASLIVLGISAAIDLKDRVIPNELVVAIAVIGFAQGLALRPGL--VWF 58
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
LLV +IVF + I+GGGD+KL+++ + L + + GG+LS F
Sbjct: 59 SLLVAIIVFFGLWIVAHVKIIGGGDLKLISAVTLLVPPDRV-GQLLIDIVLAGGLLSCFY 117
Query: 121 LTVRMITNHIP 131
L +P
Sbjct: 118 LAAHYGLKRLP 128
>gi|330873608|gb|EGH07757.1| hypothetical protein PSYMP_04310 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 160
Score = 41.0 bits (95), Expect = 0.069, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 8/153 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI--ALHLLVGLIVF 69
A D IPN +++ + + G+ + L L+
Sbjct: 3 LFFLLVWFAICAEQDARRKEIPNGLTLGAIALTTGYLAVTGLTWLGAPPLEGALALLLAL 62
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ + +G DVKL+T+ A+ +F+ G + + L + +
Sbjct: 63 ALTLPGYTLGRLGAADVKLMTALALASNTAYLLCTFIGA----GVAVLAWALIGKRVWPL 118
Query: 130 IPIFGMFVPKSFLMK--NKIPYGIAISMGGLIS 160
I K +K P+ + +G L++
Sbjct: 119 IHQQVTQRYKHMNPGVPDKYPFSPFLLIGLLLT 151
>gi|229493532|ref|ZP_04387317.1| peptidase A24A, prepilin type IV [Rhodococcus erythropolis SK121]
gi|229319493|gb|EEN85329.1| peptidase A24A, prepilin type IV [Rhodococcus erythropolis SK121]
Length = 168
Score = 41.0 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 4/126 (3%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
+ +V L + V + DL +PN ++ ++ A + G + L
Sbjct: 18 TSVVQLLSGLAVVWWCVAISTVDLAVRRLPNSFTLPGYAVVMVYATVSGTVWVAAVGSAL 77
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFIL 121
+ I + + MG GDVKL G ++L L ++L L +
Sbjct: 78 LAGI--HLLAHVMSPGSMGVGDVKLSLPLGAVTGLVGADAWLWSLVSASVLTATLGTALE 135
Query: 122 TVRMIT 127
R
Sbjct: 136 LRRRGP 141
>gi|254831951|ref|ZP_05236606.1| hypothetical protein Lmon1_11380 [Listeria monocytogenes 10403S]
gi|284801940|ref|YP_003413805.1| hypothetical protein LM5578_1695 [Listeria monocytogenes 08-5578]
gi|284995082|ref|YP_003416850.1| hypothetical protein LM5923_1647 [Listeria monocytogenes 08-5923]
gi|284057502|gb|ADB68443.1| hypothetical protein LM5578_1695 [Listeria monocytogenes 08-5578]
gi|284060549|gb|ADB71488.1| hypothetical protein LM5923_1647 [Listeria monocytogenes 08-5923]
Length = 236
Score = 41.0 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++ I + L F ++D+F +PN + IV A L + + + +
Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQTLMDLIYSGGISCLFY 157
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ F F +G GD+K+L + + G+ + F + + IL ++ ++ N
Sbjct: 158 LLFFIIFRK-GIGLGDIKILIILSTFLGFKIGYYIFFLAIIMGTIILLTALMLKKVKKNK 216
>gi|218884525|ref|YP_002428907.1| peptidase A24A, prepilin type IV [Desulfurococcus kamchatkensis
1221n]
gi|218766141|gb|ACL11540.1| peptidase A24A, prepilin type IV [Desulfurococcus kamchatkensis
1221n]
Length = 259
Score = 41.0 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 39/97 (40%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
S +V + + L+ ++ D I + + V G ++ L Y+ L+L
Sbjct: 6 SNLVEAIKIIYFLGFLLVFSIQDYKRREISDNLVYVFTGGSIVFCSLTIYMYKPPPLYLA 65
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP 100
+V + + +MG GDV ++ S + + P
Sbjct: 66 FSFMVPALFIAMYLAGLMGEGDVYVIFSLTLLYPVPP 102
>gi|320107658|ref|YP_004183248.1| Prepilin peptidase [Terriglobus saanensis SP1PR4]
gi|319926179|gb|ADV83254.1| Prepilin peptidase [Terriglobus saanensis SP1PR4]
Length = 292
Score = 40.6 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 30/209 (14%), Positives = 63/209 (30%), Gaps = 57/209 (27%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT------------------- 47
+ A + F L+ A+ D + ++P+ ++ + ++
Sbjct: 98 LQIATLWVAGFLLIGLAVMDWQTHLLPDGFTLTGILLGMMLICTRTIFLGPHEGDVLLAK 157
Query: 48 ---------------AFLLGMDYELIALHLLVGLIVFIICFCFFAF-------NIMGGGD 85
L LI L + F++ F A + MG GD
Sbjct: 158 HHIELRAPGATHDGGNIFLTGSESLIFGRLAAVVGAFLLLFAIRALYKLVRKRDGMGLGD 217
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
KLL A + G+ P+ + V + ++ +
Sbjct: 218 AKLLAMIAAFLGFAPALFALFVGVCGATFYAVLLLMRGKASG----------------AT 261
Query: 146 KIPYGIAISMGGLISYPDSYLFKVALMGL 174
++P+G +++GG++S L
Sbjct: 262 RLPFGSFLAVGGMVSALYGEAVVAWYTSL 290
>gi|317133738|ref|YP_004089649.1| peptidase A24A prepilin type IV [Ruminococcus albus 7]
gi|315450200|gb|ADU23763.1| peptidase A24A prepilin type IV [Ruminococcus albus 7]
Length = 170
Score = 40.6 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 7/148 (4%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+I + AA+ D + IPN+ ++ + + + +L +++F
Sbjct: 7 VIAAVICLAAAIFDYKTTKIPNKFIFPVIILSFIFSLIC-YPLINTGFSVLFVVLLFFFG 65
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA--ILGGILSVFILTVRMITNHI 130
MG GD+KLL + ++ W +F ++ G L T +
Sbjct: 66 MT----GWMGLGDIKLLMALSLIGTWKMGLFTFALSSIYLMIFGFLVSPYETGFYAKKML 121
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGL 158
F + + K + I +G L
Sbjct: 122 NRFKLKKEPLYKKSTKYKFAPFIMLGAL 149
>gi|170720027|ref|YP_001747715.1| peptidase A24A prepilin type IV [Pseudomonas putida W619]
gi|169758030|gb|ACA71346.1| peptidase A24A prepilin type IV [Pseudomonas putida W619]
Length = 146
Score = 40.6 bits (94), Expect = 0.076, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 2/99 (2%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFI 70
+ L + D+ I N +++ + L+ + G + IV +
Sbjct: 6 IALLLWLALCSGQDVRERQISNLLTLGVAACALVWLAVTGHSWIGARASDAGWALAIVLL 65
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
+ + G GDVKLL + + +F+
Sbjct: 66 LTLPGYVMGRFGAGDVKLLAALGLATSQDYVLGTFIGAG 104
>gi|159040490|ref|YP_001539743.1| peptidase A24A prepilin type IV [Salinispora arenicola CNS-205]
gi|157919325|gb|ABW00753.1| peptidase A24A prepilin type IV [Salinispora arenicola CNS-205]
Length = 280
Score = 40.6 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 18/140 (12%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI-----ALHLLVGLIVFIICFCFFAFNI 80
DL +P+ + + +G + + + L V + +
Sbjct: 151 DLRVLRLPDPLVGIAVGGGTALLAIAAVADQAAPALGRGLLAAALCGVGYLTLALLPRSQ 210
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
+G GDVKL + ++ GW LG + + + N + G V
Sbjct: 211 LGFGDVKLGAALGLYLGW-------------LGWQTVAVGVLLAPLVNLPVVIGFLVAGH 257
Query: 141 FLMKNKIPYGIAISMGGLIS 160
+ +PYG A+ + + +
Sbjct: 258 AGRRTPVPYGPAMLVAAIAA 277
>gi|85704693|ref|ZP_01035795.1| Peptidase A24A-like [Roseovarius sp. 217]
gi|85671101|gb|EAQ25960.1| Peptidase A24A-like [Roseovarius sp. 217]
Length = 250
Score = 40.6 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 19/154 (12%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFC 74
+ L+ L DL + +P+ ++ + +L A+ D + VG F+
Sbjct: 109 LWVLMGLVLCDLAAFRLPDGLTGPLFLIGILLAWEDPSRDLWGALIGAAVGAGTFMALRI 168
Query: 75 FFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ +G GDVKL+ G + L + + + L +
Sbjct: 169 GYQTLRGREGLGWGDVKLMAGIGAGLGVMALPVVTLVAAVLAMAVAGITALRRGARPDGD 228
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
I +G ++ + + S
Sbjct: 229 L--------------AIAFGAYLAGAAGLVWIWS 248
>gi|283781775|ref|YP_003372530.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
gi|283440228|gb|ADB18670.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
Length = 420
Score = 40.6 bits (94), Expect = 0.078, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 23/144 (15%)
Query: 28 FSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI----ICFCFFAFNIMGG 83
+ +I ++ V++ L + L G + + MG
Sbjct: 251 RAMIIAGAMAEVIVVIGWLMGDAAWRAMLTSVVGLAFGGGLIWSVRIVGQIALRKEAMGF 310
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDV L+ + GW + L F F + F
Sbjct: 311 GDVTLMAMIGAFLGWQVALLVFFFS-------------------PVTAVIVSLTQWIFTG 351
Query: 144 KNKIPYGIAISMGGLISYPDSYLF 167
+ +I +G +++ + L
Sbjct: 352 RREIAFGPYLALAAVWVVVRWGLM 375
>gi|222083139|ref|YP_002542504.1| type IV prepilin peptidase [Agrobacterium radiobacter K84]
gi|221727818|gb|ACM30907.1| type IV prepilin peptidase [Agrobacterium radiobacter K84]
Length = 168
Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 20/166 (12%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-----DYEL 57
+ L+ ++ A DL IP+ ++++ G + G +
Sbjct: 4 PLTLQQWVAALLMIATVLRIAWIDLKIMRIPDHWNVLLAGLGIAYRLPFGDLDTLRALAV 63
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+ ++ + +G GDVK + S AVWF L F+ +
Sbjct: 64 GLATMAAFALLRWVHRRISGRIGIGLGDVKFIGSAAVWFSPWNLPLFFMLASSTALLFSL 123
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
VF+ + L ++P+G + + ++++
Sbjct: 124 VFL---------------RGKSTALRNLRVPFGPFLGIALVLTWLS 154
>gi|332186856|ref|ZP_08388598.1| type IV leader peptidase family protein [Sphingomonas sp. S17]
gi|332013189|gb|EGI55252.1| type IV leader peptidase family protein [Sphingomonas sp. S17]
Length = 253
Score = 40.6 bits (94), Expect = 0.081, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 33 PNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVK 87
P+R+++ + G L+T A G + L L G + + +GGGD K
Sbjct: 127 PDRLTLWLAGIGLMTGALGFGPSFSDRMLGGLAGFGLLWTIAAGYRRWRGREGLGGGDPK 186
Query: 88 LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
LL + +W GW L I G +++ + R + +
Sbjct: 187 LLGAIGLWLGWRMLPAVLLVACLIGLGYVALRHVFGRRLAADDMVP 232
>gi|312621922|ref|YP_004023535.1| prepilin peptidase [Caldicellulosiruptor kronotskyensis 2002]
gi|312202389|gb|ADQ45716.1| Prepilin peptidase [Caldicellulosiruptor kronotskyensis 2002]
Length = 258
Score = 40.6 bits (94), Expect = 0.081, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 16/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFS--AMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHL 62
V + + + L++ ++ D + + + + + +L + + L
Sbjct: 95 VSAFLLFLIGCILIYISVVDFKTYEMSVTSILLLAILKFGFEVSLKGVSKTSMTFMVLGP 154
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ ++ + + MG GDV LL + V F + + + + L
Sbjct: 155 ILNALLVGLIYLITRGYAMGLGDVLLLMAGGVGFTIRQAIVCNFIAFFVAFLYVLGLKLV 214
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K K +IP+G IS+G +S
Sbjct: 215 ------------QSILKGNEKKREIPFGPFISIGIFVS 240
>gi|315230981|ref|YP_004071417.1| hypothetical protein TERMP_01218 [Thermococcus barophilus MP]
gi|315184009|gb|ADT84194.1| hypothetical protein TERMP_01218 [Thermococcus barophilus MP]
Length = 375
Score = 40.6 bits (94), Expect = 0.081, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLL 63
+ + + V + +D+ + I ++ + ++ G+ D + L+
Sbjct: 1 MQFLLIALGVIMGVLTSYTDIKTGFIDDKHIFPFVALGIVYYVYSGLKVGDLFYASSGLI 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWT 99
F+I + + GDV +L + F +
Sbjct: 61 GLGAGFLIGYLMYLLGGWASGDVIILAGYSALFPYA 96
>gi|15807059|ref|NP_295788.1| prepilin peptidase, type IV [Deinococcus radiodurans R1]
gi|6459852|gb|AAF11609.1|AE002042_4 prepilin peptidase, type IV [Deinococcus radiodurans R1]
Length = 388
Score = 40.6 bits (94), Expect = 0.081, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 41/156 (26%)
Query: 31 MIPNRVSIVMLGSFLLTAFLLGMD-----YELIALHLLVGLIVFIICFCFFAFN------ 79
IP +++ L + + +V + + +
Sbjct: 239 RIPELLTLGGFLVSLALSSAGTGPGLLDMLRGGLMAAGAVSLVCGVYWWIYWRRNKQAED 298
Query: 80 -----------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
MG GDVKL + GW L+ + G +L + L ++
Sbjct: 299 DGTDDEQSDPVAMGFGDVKLAAVIGAFLGWERLLLAVVV-AIFAGAVLGLVQLALKQENR 357
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+G +++G +++
Sbjct: 358 VK------------------FGPYLALGAVVALLWG 375
Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ L+ + DL + +P+ +++ +L L+ G +
Sbjct: 105 TLGLMVLFTILLVGSAIDLDTMTLPDELTLPGTLLGVLF------GLAGAGLYAQEGQLG 158
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWF 96
+MG G + L++ W
Sbjct: 159 LPNVAQAVEGALMGAGVIVLISVYGSWV 186
>gi|330963453|gb|EGH63713.1| hypothetical protein PSYAC_02157 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 160
Score = 40.6 bits (94), Expect = 0.082, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 8/153 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI--ALHLLVGLIVF 69
A D IPN +++ + + G+ + L L+
Sbjct: 3 LFFLLVWFAICAEQDARRKEIPNGLTLGAIALTTGYLAVTGLTWLGAPPLEGALALLLAL 62
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ + +G DVKL+T+ A+ +F+ G + + L + +
Sbjct: 63 ALTLPGYTLGRLGAADVKLMTALALASNTAYLLCTFIGA----GVAMLAWALIGKRVWPL 118
Query: 130 IPIFGMFVPKSFLMK--NKIPYGIAISMGGLIS 160
I K +K P+ + +G L++
Sbjct: 119 IHQQVTQRYKHMNPGVPDKYPFSPFLLIGLLLT 151
>gi|291295333|ref|YP_003506731.1| peptidase A24A domain-containing protein [Meiothermus ruber DSM
1279]
gi|290470292|gb|ADD27711.1| peptidase A24A domain protein [Meiothermus ruber DSM 1279]
Length = 387
Score = 40.6 bits (94), Expect = 0.085, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 19/85 (22%)
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+MG GDV L VW G+ ++ +F G ++ + + +
Sbjct: 308 VMGYGDVVLAGFLGVWLGFANLLVA-VFIAVFAGAVIGLIM------------------R 348
Query: 140 SFLMKNKIPYGIAISMGGLISYPDS 164
+ +++IP+G +++GGL+++
Sbjct: 349 RYSGESQIPFGPYLAIGGLVAFFYG 373
>gi|253581766|ref|ZP_04858990.1| integral membrane protein [Fusobacterium varium ATCC 27725]
gi|251836115|gb|EES64652.1| integral membrane protein [Fusobacterium varium ATCC 27725]
Length = 150
Score = 40.6 bits (94), Expect = 0.086, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 6/138 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + D+ IPN ++I+ + E L V +
Sbjct: 4 LFLVFLLIVSFIIFVIDIKKLYIPNTINIIFFVMAVCYRGFDLYKIENGILGAGVYTLPL 63
Query: 70 IICFC----FFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTV 123
+ + IMG GD+KL+ G+ + + ++ + + +
Sbjct: 64 LFFYGYGSDLAQKEIMGFGDIKLMIGIGYVLGYSDFYTIYIYYLETFVIAALFGIVYIVK 123
Query: 124 RMITNHIPIFGMFVPKSF 141
+ F F+ SF
Sbjct: 124 KKTVRGEIAFSPFLLFSF 141
>gi|254828215|ref|ZP_05232902.1| comC [Listeria monocytogenes FSL N3-165]
gi|258600604|gb|EEW13929.1| comC [Listeria monocytogenes FSL N3-165]
Length = 236
Score = 40.6 bits (94), Expect = 0.086, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++ I + L F ++D+F +PN + IV A L + + + +
Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQTLMDLIYSGGISCLFY 157
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ F F +G GD+K+L + + G+ + F + + IL ++ ++ N
Sbjct: 158 LLFFIIFRK-GIGLGDIKILIILSTFLGFKIGYYIFFLAIIMGTIILLTALMLKKVKKNK 216
>gi|33600807|ref|NP_888367.1| hypothetical protein BB1822 [Bordetella bronchiseptica RB50]
gi|33568407|emb|CAE32319.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 174
Score = 40.6 bits (94), Expect = 0.086, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 7/115 (6%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL---- 57
E+ + + + + DL + +PNR+ I + +
Sbjct: 1 MENLLREHVWWAVYVAFNLLVVFYDLRARRVPNRLLIAAALAQCAWLAWHAWGVQATPAA 60
Query: 58 ---IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
+G ++ + + +MG GDVK L + G P L +
Sbjct: 61 GARGWSDAGLGFVLGMAFVMLWRMRLMGAGDVKYLAVLGLAIGAWPWLLVLVLAG 115
>gi|37680847|ref|NP_935456.1| hypothetical protein VV2663 [Vibrio vulnificus YJ016]
gi|37199596|dbj|BAC95427.1| hypothetical protein [Vibrio vulnificus YJ016]
Length = 172
Score = 40.6 bits (94), Expect = 0.087, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 1/135 (0%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ FCL+ A+ D IPN ++ L ++ D+ + L + G+I F
Sbjct: 6 LIWFCLLVVAVYDARDNRIPNA-WLLPLTLLACLHWVAKGDFSQLFLAIGAGVIYFSSGL 64
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
F M GDVKLL V GW + G + F++
Sbjct: 65 VLFFLRAMSPGDVKLLGVVGVVIGWDAMGTVAYWITLSAGLVALFFMMLHYAQYPDSLQK 124
Query: 134 GMFVPKSFLMKNKIP 148
+ M ++P
Sbjct: 125 LVGRYSFQAMSGQVP 139
>gi|289192728|ref|YP_003458669.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus sp.
FS406-22]
gi|288939178|gb|ADC69933.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus sp.
FS406-22]
Length = 234
Score = 40.6 bits (94), Expect = 0.088, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--IALHLLVGLIVF 69
F++ L+ A++ DL S I + + I M+ L+ L + +VG IV
Sbjct: 4 FIVGAIGLLIASIYDLKSREIEDYIWISMVIFGLIYHGYLSFISHDMSYIIQSIVGFIVC 63
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103
F +GGGD KL+ +
Sbjct: 64 FFLGFFMFLLGVGGGDGKLIMGLGALIPKYNMPI 97
>gi|307594683|ref|YP_003901000.1| peptidase A24A prepilin type IV [Vulcanisaeta distributa DSM 14429]
gi|307549884|gb|ADN49949.1| peptidase A24A prepilin type IV [Vulcanisaeta distributa DSM 14429]
Length = 253
Score = 40.6 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 35/95 (36%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+L+ V A++ DL + I + I+ + + + + L+++ ++ +
Sbjct: 12 YLLVLAVQVAASIQDLRTREISDWTWIIGSIMCVPLGLYVVIMLNQLILYIVSVVVGSVF 71
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
+ MGG D K + + P L
Sbjct: 72 ALAVYWLRAMGGADSKSIAFISASIPTLPMATPAL 106
>gi|25029118|ref|NP_739172.1| hypothetical protein CE2562 [Corynebacterium efficiens YS-314]
gi|23494405|dbj|BAC19372.1| hypothetical protein [Corynebacterium efficiens YS-314]
Length = 220
Score = 40.6 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 18/158 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRV---SIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ DL +P+R+ +++ L L + +G + LL
Sbjct: 72 ELIGLAAAAVGCTLLMVIDLAVCRLPDRLVAATLLALVLGFLASAAVGGTWNDWVRALLA 131
Query: 65 GLIVFIICFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
GL++ + F A +G GDVK V+ GW
Sbjct: 132 GLVLLLGYFALAFIAPAGLGLGDVKFAAVVGVFLGWFSW-------------QHVAIGTL 178
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + N + + + + K IP+G + G +++
Sbjct: 179 LAFVLNVVVAVAVLLTRCGNRKTDIPFGPWMVAGAVLA 216
>gi|313637693|gb|EFS03069.1| type IV leader peptidase family protein [Listeria seeligeri FSL
S4-171]
Length = 236
Score = 40.2 bits (93), Expect = 0.097, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ I + L F ++D+ IPN + I+ + L L + + + V +I
Sbjct: 96 EFFLCCITYYFLAFFFITDILYMYIPNSIIILFTITLLFVYCLFDQPIVNLIISVGVSMI 155
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+++ F F +G GD+KL + + G+ + F + I IL + + ++
Sbjct: 156 FYMLFFLIFRK-GIGLGDIKLFIILSSFLGFKTGYYIFFLAILIGTIILLIAVAAKKIKK 214
Query: 128 NHIPIFGMFVPKSF 141
N F ++ SF
Sbjct: 215 NKQVPFVPYIFTSF 228
>gi|313633116|gb|EFS00012.1| type IV leader peptidase family protein [Listeria seeligeri FSL
N1-067]
Length = 236
Score = 40.2 bits (93), Expect = 0.098, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ I + L F ++D+ IPN + I+ + L L + + + V +I
Sbjct: 96 EFFLCCITYYFLAFFFITDILYMYIPNSIIILFTITLLFVYCLFDQPIVNLIISVGVSMI 155
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+++ F F +G GD+KL + + G+ + F + I IL + + ++
Sbjct: 156 FYMLFFLIFRK-GIGLGDIKLFIILSSFLGFKTGYYIFFLAILIGTIILLIAVAAKKIKK 214
Query: 128 NHIPIFGMFVPKSF 141
N F ++ SF
Sbjct: 215 NKQVPFVPYIFTSF 228
>gi|320449298|ref|YP_004201394.1| leader peptidase PilD [Thermus scotoductus SA-01]
gi|320149467|gb|ADW20845.1| leader peptidase PilD [Thermus scotoductus SA-01]
Length = 359
Score = 40.2 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 24/95 (25%)
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MG GDVKLL + W G LF G ++ +
Sbjct: 286 AMGYGDVKLLGALGAWLGLYSLL--ALFLGVFAGALVGLAF------------------- 324
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ KIP+G +++GG +++ A +
Sbjct: 325 ---RQRKIPFGPYLALGGGVAFFFGETLWRAYLAW 356
>gi|293394400|ref|ZP_06638699.1| prepilin peptidase [Serratia odorifera DSM 4582]
gi|291423089|gb|EFE96319.1| prepilin peptidase [Serratia odorifera DSM 4582]
Length = 147
Score = 40.2 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 20/112 (17%)
Query: 55 YELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+ + G + + + F +G GD KLL + W GW L
Sbjct: 46 LADAVIGAMTGYLSLWLLYWAFRLLTGRETLGYGDFKLLAALGAWLGWASLPTLLLLAAT 105
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ L+ R + +P+G +++ G +
Sbjct: 106 AGIVVTLAARLSHRRPLD----------------APLPFGPLLALSGWGLFL 141
>gi|144898051|emb|CAM74915.1| membrane protein [Magnetospirillum gryphiswaldense MSR-1]
Length = 155
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ LV A++SD+ + I +R S+ ++ +F+L G + +A H+ + VF
Sbjct: 14 CLLVAALVDASISDVRALRIADRDSVAVVAAFILLGA-NGWPVQELAWHVAAAVAVFAAG 72
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
FA + GGGDVKL + A+ G+ FLF +A++GGI+++ +L +R
Sbjct: 73 AALFALGVWGGGDVKLCAALALLTGFVG-LPRFLFVMAMVGGIVALAVLALRGR------ 125
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGL 158
++PYG+AI+ G+
Sbjct: 126 ---------AAGGQVPYGLAIAAAGM 142
>gi|1073193|pir||C53374 type IV prepilin peptidase (EC 3.4.99.-) pilD - Neisseria
lactamica (strain LNP411) (fragment)
Length = 102
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
L+ L+ D + +P+ +++ ++ L+ G + L + G +
Sbjct: 32 LVLTAFLISLTFIDADTQYLPDSMTLPLIWLGLIFNLDGGFVPLQSAVLGAVAGYGSLWL 91
Query: 72 CFCFFAF 78
+
Sbjct: 92 LCAVYKL 98
>gi|330830434|ref|YP_004393386.1| Leader peptidase PilD [Aeromonas veronii B565]
gi|328805570|gb|AEB50769.1| Leader peptidase PilD [Aeromonas veronii B565]
Length = 127
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
+ + +SDLF IPN L+ A +G L L++ ++ ++ +
Sbjct: 1 MVCWCLVSDLFERRIPNLAV-------LVLALWVGWLLPFNPLSLVLAILTLLLGLVAYH 53
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
G GD KLL +G + L +A GG+LS+ L +
Sbjct: 54 RGWCGAGDSKLLAVC--LYGAGEQWPELLLLMAFSGGLLSLVCLIHSRLRPSPNP----- 106
Query: 138 PKSFLMKNKIPYGIAISMGGLISYP 162
+PYG+AI ++ P
Sbjct: 107 -------TTVPYGVAILWAAALTTP 124
>gi|168700257|ref|ZP_02732534.1| type 4 prepilin-like proteins leader peptide processing enzyme
[Gemmata obscuriglobus UQM 2246]
Length = 391
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 5/120 (4%)
Query: 53 MDYELIALHLLVGLIVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
M + VG +V F +G GD LL + GW LS
Sbjct: 228 MGLLNSVIGAFVGSLVVRATKWFFETGFGREALGLGDADLLMMAGAFLGWQIPMLSLFTG 287
Query: 109 VAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK-NKIPYGIAISMGGLISYPDSYLF 167
+ + P S ++ ++P+G +++G ++++
Sbjct: 288 AVAALVLKVFESVCWNSAPAARQGSSAGTPVSGPVQPRELPFGPGLAIGVVVTWFAWPWL 347
>gi|260913755|ref|ZP_05920231.1| prepilin peptidase [Pasteurella dagmatis ATCC 43325]
gi|260632294|gb|EEX50469.1| prepilin peptidase [Pasteurella dagmatis ATCC 43325]
Length = 233
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 24/161 (14%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
+ L A+ D +I + + + A+ G E + L +G
Sbjct: 89 QGGYVAVYLSILFCIAVLDCHYQLIAPQFCQSLFVLSIFGAWFDVTGWTLEEVLLSAFIG 148
Query: 66 LIVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F + + + ++G GD L+ W F + F + G + +
Sbjct: 149 FGAFYLIYQIGKCAYKKEVLGRGDYWLMLGLGSAIHWQY-FPILVLFACLAGLFYAYGL- 206
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ L ++P+G + + G I
Sbjct: 207 ----------------KRKGLQVKELPFGTFLCVSGAILLL 231
>gi|239907932|ref|YP_002954673.1| leader peptidase/N-methyltransferase [Desulfovibrio magneticus
RS-1]
gi|239797798|dbj|BAH76787.1| leader peptidase/N-methyltransferase [Desulfovibrio magneticus
RS-1]
Length = 263
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 21/167 (12%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVFI 70
+L + A+ D ++PN ++ L A + L + +G VF
Sbjct: 112 YLALGGLFIIASGIDFAVYLLPNYLTYPAAVLGLALGALDPAIGPVLAGVGAALGFGVFW 171
Query: 71 ICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + + +GGGDVKL+ S G + L
Sbjct: 172 LLAAAYRTAKGVDGLGGGDVKLMLSIGGAVGGLGLPYAVLMGSLAA-------------- 217
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + + + IP+G + +GG+I L G
Sbjct: 218 --LVASPYYVLGRGKDRQMPIPFGPFLCLGGMIQMLYGQRIFALLAG 262
>gi|325841918|ref|ZP_08167519.1| peptidase, A24 family [Turicibacter sp. HGF1]
gi|325489805|gb|EGC92159.1| peptidase, A24 family [Turicibacter sp. HGF1]
Length = 221
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 55/165 (33%), Gaps = 18/165 (10%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL--HLLVGLIVF 69
+L + L D + + +++ LL + + + + +
Sbjct: 71 YLFFTVLMTLIGLIDFKTTYVYRSTTLITALGGLLFIGIESFKSQAWPVDDLMGAFIGFS 130
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+I MG GD+++ ++ G S ++ F + G + ++ +
Sbjct: 131 VIGLIVVLTRGMGEGDIEIAALAGLYLGTQGSVITLFFGFVLGGIVGAILLSL------- 183
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
KS MK+++ +G + MG I+ + L
Sbjct: 184 ---------KSKGMKDEMAFGPYLVMGSFIAMLMGQNIIEFYLNL 219
>gi|145638798|ref|ZP_01794407.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
PittII]
gi|145272393|gb|EDK12301.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
PittII]
gi|309750288|gb|ADO80272.1| Type II secretory pathway, prepilin signal peptidase PilD
[Haemophilus influenzae R2866]
Length = 230
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 27/167 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ F + L + D +I + + +L L A L + A
Sbjct: 84 IFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAAS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V ++ I ++ G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYAIYWIAKFYYGKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI- 201
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
K IP+ +++ +I Y Y +
Sbjct: 202 -------------------HKKKKEFIPFAPFMNLSAVIIYFVKYYW 229
>gi|46907779|ref|YP_014168.1| type IV leader peptidase family protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093085|ref|ZP_00230862.1| type IV leader peptidase family protein [Listeria monocytogenes
str. 4b H7858]
gi|226224151|ref|YP_002758258.1| late competence protein ComC (type IV prepilin peptidase) [Listeria
monocytogenes Clip81459]
gi|254824391|ref|ZP_05229392.1| type IV leader peptidase [Listeria monocytogenes FSL J1-194]
gi|254931490|ref|ZP_05264849.1| type IV leader peptidase [Listeria monocytogenes HPB2262]
gi|46881048|gb|AAT04345.1| type IV leader peptidase family protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47018525|gb|EAL09281.1| type IV leader peptidase family protein [Listeria monocytogenes
str. 4b H7858]
gi|225876613|emb|CAS05322.1| Putative late competence protein ComC (type IV prepilin peptidase)
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|293583042|gb|EFF95074.1| type IV leader peptidase [Listeria monocytogenes HPB2262]
gi|293593626|gb|EFG01387.1| type IV leader peptidase [Listeria monocytogenes FSL J1-194]
gi|332311992|gb|EGJ25087.1| Type IV leader peptidase family protein [Listeria monocytogenes
str. Scott A]
Length = 236
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++ I F L F ++D+F +PN + IV + A L ++ + +
Sbjct: 98 LLYYIIYFFLAFFFITDIFYLYVPNSILIVFFCVLAIIAILYNQTLMDFIFSGVISCLFY 157
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ F F +G GD+K+L + + G+ + F + I IL ++ ++ N
Sbjct: 158 LLFFIIFRK-GIGLGDIKILIILSTFLGFKIGYYIFFLAIIIGTIILLTALILNKVKKNK 216
>gi|257453312|ref|ZP_05618611.1| integral membrane protein [Fusobacterium sp. 3_1_5R]
gi|257467442|ref|ZP_05631753.1| integral membrane protein [Fusobacterium gonidiaformans ATCC 25563]
gi|315918566|ref|ZP_07914806.1| integral membrane protein [Fusobacterium gonidiaformans ATCC 25563]
gi|317059844|ref|ZP_07924329.1| integral membrane protein [Fusobacterium sp. 3_1_5R]
gi|313685520|gb|EFS22355.1| integral membrane protein [Fusobacterium sp. 3_1_5R]
gi|313692441|gb|EFS29276.1| integral membrane protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 148
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 8/136 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + + + D+ + +PN ++ +L L+ + + G ++ I + + +
Sbjct: 1 MEKLLIFCIIGNIFYLCIEDIRTKEVPNLGNLFLLCCSLIYSRINGNSWDTILISISLYS 60
Query: 67 IVFIICFC----FFAFNIMGGGDVKLLTSTAVWFG----WTPSFLSFLFFVAILGGILSV 118
I + F ++G GD+K + S S F +L ++ V
Sbjct: 61 FPLIFLYGYVSDFVQKEVLGFGDIKFVMSVGAIMASTYHLWISIYYFYMISFVLASMIGV 120
Query: 119 FILTVRMITNHIPIFG 134
+IL + +
Sbjct: 121 YILYSKKTKELAMLPY 136
>gi|226322632|ref|ZP_03798150.1| hypothetical protein COPCOM_00404 [Coprococcus comes ATCC 27758]
gi|225208969|gb|EEG91323.1| hypothetical protein COPCOM_00404 [Coprococcus comes ATCC 27758]
Length = 230
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 51/133 (38%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
AVF I L AL D MI +R I++L +L L L + + V
Sbjct: 79 AVFFIYLGILFVIALVDWHIQMIYDRFHIMILILAVLDFMLYPEMGIATRLTGMGIISVP 138
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ GGGD+KL++ + + G + + G +++ ++ R+
Sbjct: 139 MLVLALAIPGAFGGGDIKLMSVSGLLIGGASMICAMCIGIITGGAYVTLMLVRKRLNKTD 198
Query: 130 IPIFGMFVPKSFL 142
FG F+
Sbjct: 199 QFAFGPFLAFGLA 211
>gi|108799317|ref|YP_639514.1| peptidase A24A, prepilin type IV [Mycobacterium sp. MCS]
gi|119868433|ref|YP_938385.1| peptidase A24A, prepilin type IV [Mycobacterium sp. KMS]
gi|126434975|ref|YP_001070666.1| peptidase A24A, prepilin type IV [Mycobacterium sp. JLS]
gi|108769736|gb|ABG08458.1| peptidase A24A, prepilin type IV [Mycobacterium sp. MCS]
gi|119694522|gb|ABL91595.1| peptidase A24A, prepilin type IV [Mycobacterium sp. KMS]
gi|126234775|gb|ABN98175.1| peptidase A24A, prepilin type IV [Mycobacterium sp. JLS]
Length = 133
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 35/122 (28%), Gaps = 2/122 (1%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L + DL +PN +++ L+ A L G L
Sbjct: 1 MLVWLSALTVYDLRWRRLPNWLTLPGATVILVGAVLAGRGTPAAL--GAAALFTLYAATH 58
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
A MG GDVKL G + + L +A + T+ +P
Sbjct: 59 LLAPAAMGAGDVKLALGVGGLTGAFGADVWLLAALAAPLLTAICALATLTRRDRTVPHGP 118
Query: 135 MF 136
Sbjct: 119 SM 120
>gi|302542840|ref|ZP_07295182.1| putative cysteine protease [Streptomyces hygroscopicus ATCC 53653]
gi|302460458|gb|EFL23551.1| putative cysteine protease [Streptomyces himastatinicus ATCC 53653]
Length = 248
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 24/135 (17%)
Query: 31 MIPNRVSIVMLGSFLLTA------FLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+P+ +++ M G+ + L +V +++ F + MG G
Sbjct: 118 RLPDVLTLPMAGAAAALLGAAALLPHSAGSWPRALLGGVVLGGAYLVLFLI-SPRGMGLG 176
Query: 85 DVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
DVKL + V GW + F F +LG + ++ ++ R
Sbjct: 177 DVKLALTLGVALGWYGWPVLFWGGFAGVLLGSLYAMALVLARRAG--------------- 221
Query: 143 MKNKIPYGIAISMGG 157
+ +G + +G
Sbjct: 222 RGTPLAFGPFMILGA 236
>gi|237743192|ref|ZP_04573673.1| integral membrane protein [Fusobacterium sp. 7_1]
gi|229433488|gb|EEO43700.1| integral membrane protein [Fusobacterium sp. 7_1]
Length = 165
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 6/142 (4%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFN 79
D+ IPN ++ +L + + +D I I+ +
Sbjct: 16 VMYIDINKKYIPNILNFSILVLSIFICGIDKIDSFFIGASCYTLPILIFYGYISDVLKKE 75
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+ G GD+KL+ + + FL + S+ L + + V
Sbjct: 76 VFGFGDIKLIIALGGLL-YQGEINIFLQIYIFYLLVFSLATLYIIIYIVISYCRNKSVK- 133
Query: 140 SFLMKNKIPYGIAISMGGLISY 161
+ ++ + I + +I Y
Sbjct: 134 --IRGVELAFAPYICLAFIIIY 153
>gi|125973064|ref|YP_001036974.1| prepilin peptidase CpaA [Clostridium thermocellum ATCC 27405]
gi|256004567|ref|ZP_05429545.1| Flp pilus assembly protein, protease CpaA [Clostridium thermocellum
DSM 2360]
gi|125713289|gb|ABN51781.1| prepilin peptidase CpaA [Clostridium thermocellum ATCC 27405]
gi|255991439|gb|EEU01543.1| Flp pilus assembly protein, protease CpaA [Clostridium thermocellum
DSM 2360]
gi|316940715|gb|ADU74749.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 1313]
Length = 142
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 54 DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
+ LL ++ F++ +A ++G GDVKL ++ G + + + + G
Sbjct: 13 GVRGLLDSLLGIIVPFLLLIVLYALRMLGAGDVKLFSAIGAVLGVRAALW-IMAYSFLAG 71
Query: 114 GILSVFILTVRMITNHIP 131
G++++ IL +
Sbjct: 72 GVIALIILIINRNGKERL 89
>gi|170692567|ref|ZP_02883729.1| hypothetical protein BgramDRAFT_2539 [Burkholderia graminis C4D1M]
gi|170142223|gb|EDT10389.1| hypothetical protein BgramDRAFT_2539 [Burkholderia graminis C4D1M]
Length = 153
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 87 KLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNK 146
KLL W G F + ++GG+ + + R + + +
Sbjct: 64 KLLAMVGAWIGPLLVFEAA-LATCLIGGVWLLALTARRRQFRKALGNVLSLVHPAMRGGG 122
Query: 147 ---------IPYGIAISMGGLISYPDSY 165
+PYG+AI+ G ++ +
Sbjct: 123 AASIESVGSVPYGVAIATGTVVVLLATA 150
>gi|297618692|ref|YP_003706797.1| peptidase A24B, FlaK domain-containing protein [Methanococcus
voltae A3]
gi|297377669|gb|ADI35824.1| Peptidase A24B, FlaK domain protein [Methanococcus voltae A3]
Length = 232
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLLVGL 66
+ I L+ A++ D+ S I N + I M LL + L + + + +
Sbjct: 1 MAYTIGLLGLILASIQDIKSREIENYIWIGMAVIGLLLSLYLSFTAGSFTPVISSVAGFI 60
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
I FII + F +GG D K+L
Sbjct: 61 ICFIIGYLMFVL-GIGGADGKILMGMGALIP 90
>gi|293606495|ref|ZP_06688853.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292815118|gb|EFF74241.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 168
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 21/159 (13%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSF--------LLTAFLLGMDYELIALH 61
L+ V +DL +PN + ++ + + ++ + +
Sbjct: 2 LWLLLFACWNVVLIYNDLRYRRVPNTLIVLGFVAQLLWLAAAAFVPGWMYPPRFTGWLMS 61
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L F + + +MG GDVK + + G P + + G V+++
Sbjct: 62 GAGFLAAF-LFLPLWGRRLMGAGDVKAIAILGLLLGLAPLVPVLVLASLLAGLHALVYVV 120
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+IPY + + +G L
Sbjct: 121 ASH------------YWAVSHRLRQIPYAMYLGIGALSV 147
>gi|325673444|ref|ZP_08153135.1| prepilin peptidase [Rhodococcus equi ATCC 33707]
gi|325555465|gb|EGD25136.1| prepilin peptidase [Rhodococcus equi ATCC 33707]
Length = 262
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 7/134 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+L + A+ D+ +PN + ++ + L ++ D+ + + ++
Sbjct: 104 YLWFAVVGIALAVIDIDCKRLPNFLVVPSYPIVFACLAVGSVVTGDWSALLRAAIGAAVL 163
Query: 69 FIICFCFFAF--NIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVR 124
F F MG GDVKL + + L F ++ ++ + IL R
Sbjct: 164 FGFYFVLALIYPAGMGFGDVKLAGVIGAVLAYLSYGTLLVGAFLAFLVAALVGLIILVTR 223
Query: 125 MITNHIPIFGMFVP 138
I
Sbjct: 224 RGRIGTTIPFGPYM 237
>gi|167947284|ref|ZP_02534358.1| type 4 prepilin peptidase PilD [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 160
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGL 66
+ + L+ + D + ++P+ +++ +L S LL E + G
Sbjct: 93 QVLAAMGFTWALIALTMIDFDTQLLPDNITLPLLWSGLLLNLDGLFSDLESAVIGAAAGY 152
Query: 67 IVFIICF 73
+ +
Sbjct: 153 LTLWSVY 159
>gi|260822986|ref|XP_002603964.1| hypothetical protein BRAFLDRAFT_71748 [Branchiostoma floridae]
gi|229289289|gb|EEN59975.1| hypothetical protein BRAFLDRAFT_71748 [Branchiostoma floridae]
Length = 1148
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 10/134 (7%)
Query: 37 SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG---DVKLLTSTA 93
+ + + LG+ + L + + + + G V L
Sbjct: 647 VWLGVWLGVWLGVWLGVWLGVWLSVCLGVWLGVWLGVWLGVWLGVCLGVWLGVWLCVCLG 706
Query: 94 VWFG-WTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
VW G W L V + + + + + + + V + G A
Sbjct: 707 VWLGVWLGVCLGVWLGVCLGVWLGVLLGVWLGVWLGVCLGVWLGVWLGVWL------GCA 760
Query: 153 ISMGGLISYPDSYL 166
G + ++ + +
Sbjct: 761 WVCGWVCAWLFTPV 774
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
Query: 37 SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWF 96
+ + + LG+ + L + + + G V L VW
Sbjct: 675 VWLGVWLGVWLGVWLGVCLGVWLGVWLCVCLGVWLGVWL----GVCLG-VWLGVCLGVWL 729
Query: 97 GWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
G ++ LG L V++ ++ + +P +
Sbjct: 730 GVLLGVWLGVWLGVCLGVWLGVWLGVWLGCAWVCGWVCAWLFTPVTHGSVVPPAVF 785
Score = 38.7 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 35/131 (26%), Gaps = 11/131 (8%)
Query: 37 SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWF 96
+ + + LG+ + L + + +G V L VW
Sbjct: 643 VCLGVWLGVWLGVWLGVWLGVWLGVWLSVCLGVWLGVWL--GVWLG---VWLGVCLGVWL 697
Query: 97 GWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
G ++ LG L V++ + + + + G+ + +
Sbjct: 698 GVWLCVCLGVWLGVWLGVCLGVWLGVCLGVWLGVLLGVWLGVWL-----GVCLGVWLGV- 751
Query: 157 GLISYPDSYLF 167
L +
Sbjct: 752 WLGVWLGCAWV 762
>gi|312135606|ref|YP_004002944.1| prepilin peptidase [Caldicellulosiruptor owensensis OL]
gi|311775657|gb|ADQ05144.1| Prepilin peptidase [Caldicellulosiruptor owensensis OL]
Length = 252
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 24/169 (14%), Positives = 58/169 (34%), Gaps = 20/169 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF----LLGMDYELIALHLL 63
+ L++ ++ D+ + I +++ + F I L +
Sbjct: 95 QMFISFAIFCILLYISMVDIDTMEISTASILLLFIARCAQIFLEKGATFNTVLSIFLGMF 154
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+++ +I + MG GDV L+ + F + L+ I G + +V ++ +
Sbjct: 155 FSMLLILIIYILSKGRAMGFGDVLLIAAGGAGFTAAQAILANFL-AFIFGAVFAVLMMIL 213
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ MK+++P+G I++ I+
Sbjct: 214 KNK---------------NMKSEVPFGPYIAVALFITMIYGDGILQLYF 247
>gi|309972543|gb|ADO95744.1| Type II secretory pathway, prepilin signal peptidase PilD
[Haemophilus influenzae R2846]
Length = 230
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 27/162 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
F+ + L + D +I + + +L L A L + A
Sbjct: 84 TFAIWLGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAAS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+V ++ I ++ G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYAIYWIAKFYYGKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI- 201
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
K IP+ +++ +I Y
Sbjct: 202 -------------------HKKKKEFIPFAPFMNLSAVIIYF 224
>gi|152986925|ref|YP_001350198.1| hypothetical protein PSPA7_4862 [Pseudomonas aeruginosa PA7]
gi|150962083|gb|ABR84108.1| hypothetical protein PSPA7_4862 [Pseudomonas aeruginosa PA7]
Length = 140
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 2/132 (1%)
Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYEL--IALHLLVGLIVFIICFCFFAFNIMGGGDVK 87
+ N +++ L + ++ + + ++ LI + + +G DVK
Sbjct: 1 MRVSNWLTLGGLLISFIYLYVKESSLAGGTVNMAMIALLIGVALTLPGYFSGRLGAADVK 60
Query: 88 LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
L + + S F + + L R + + + P++
Sbjct: 61 YLAALGLASEPLTVLYSLSFGCLTCITLFMLRKLFERAVGKSVMHEEVGNPQAPSKNKTF 120
Query: 148 PYGIAISMGGLI 159
P+ A+S+G L
Sbjct: 121 PFIFAMSVGLLA 132
>gi|315186869|gb|EFU20627.1| peptidase A24A prepilin type IV [Spirochaeta thermophila DSM 6578]
Length = 155
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 22/144 (15%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
+ ++ D S IP+ + + +L + G + + L ++
Sbjct: 26 LLISVIDARSYRIPDFLVFLTGCVSVLFTWTEGWGL--LRFRIFAALTGGLVLLFLHLRK 83
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+G GDVK T + G +++ +
Sbjct: 84 GLGLGDVKYGTVLSYAVGLYGTWIMLAVASLTGMVWY--------------------FMR 123
Query: 140 SFLMKNKIPYGIAISMGGLISYPD 163
KIP+ +++G L+++
Sbjct: 124 GRSPLQKIPFAPFLTLGALVTFLW 147
>gi|289434830|ref|YP_003464702.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171074|emb|CBH27616.1| leader peptidase (prepilin peptidase) / N-methyltransferase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 236
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ I + L F ++D+ IPN + I+ + L L + + + V +I
Sbjct: 96 EFFLCCITYYFLAFFFITDILYMYIPNSIIILFTITLLFVYCLFDQPIVNLIISVSVSMI 155
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+++ F F +G GD+KL + + G+ + F + I IL + + ++
Sbjct: 156 FYMLFFLIFRK-GIGLGDIKLFIILSSFLGFKTGYYIFFLAILIGTIILLIAVAAKKIKK 214
Query: 128 NHIPIFGMFVPKSF 141
N F ++ SF
Sbjct: 215 NKQVPFVPYIFTSF 228
>gi|169349630|ref|ZP_02866568.1| hypothetical protein CLOSPI_00368 [Clostridium spiroforme DSM 1552]
gi|169293705|gb|EDS75838.1| hypothetical protein CLOSPI_00368 [Clostridium spiroforme DSM 1552]
Length = 233
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + L+ A+ D + I + +L + +L+GM++ A+ L+ +
Sbjct: 87 ILIFLIVMNLIVIAIIDYNTMDIYLSTILSLLVLVITYRYLIGMNFVESAIAALLISLTM 146
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
I FF + G GD++L+ + + G + L+F V I G +S ++ ++
Sbjct: 147 FIFN-FFIPDSFGFGDIELMFVSGILLGIKRNILAFCLGVIIAGLYVSYLLIFKKVDVKK 205
Query: 130 IPIFGMFV 137
F F+
Sbjct: 206 HIAFAPFL 213
>gi|85707704|ref|ZP_01038770.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1]
gi|85689238|gb|EAQ29241.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1]
Length = 165
Score = 40.2 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 20/167 (11%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ + + L+ AA +D+ S I N ++I + + + G +
Sbjct: 1 MLMTTIHYGLLIALAIGLLIAAFTDIRSRTISNWLNIAIAAGAPVFWWASGSSLWPDVVW 60
Query: 62 LLVGLIVFIICFCFFAFNI-------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
+ +V A+ +GGGD+KLL + A+WF + G
Sbjct: 61 QIGFALVVCAILVGVAYIGYRLNIVILGGGDIKLLGALALWFTPMSYLGMLWYMALCGGV 120
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ +F+L + + +PYG+AI+ G L+
Sbjct: 121 MAILFVL-------------RLMFLRPKTRGVLPYGVAIAGGALLVL 154
>gi|326423881|ref|NP_760631.2| ABC transporter permease [Vibrio vulnificus CMCP6]
gi|319999254|gb|AAO10158.2| ABC-type uncharacterized transport system, permease component
[Vibrio vulnificus CMCP6]
Length = 172
Score = 40.2 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 1/135 (0%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ FCL+ A+ D IPN ++ L ++ D+ + L + G I F
Sbjct: 6 LIWFCLLVVAVYDARDNRIPNA-WLLPLTLLACLHWVGKGDFSQLFLAIGAGSIYFGSGL 64
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
F M GDVKLL V GW + G + F++
Sbjct: 65 VLFFLRAMSPGDVKLLGVVGVVIGWDAMGAVAYWITLSAGLVALFFMMLHYAQYPDSLQK 124
Query: 134 GMFVPKSFLMKNKIP 148
+ M ++P
Sbjct: 125 LVGRYSFQAMSGQVP 139
>gi|47096714|ref|ZP_00234299.1| type IV leader peptidase family protein [Listeria monocytogenes
str. 1/2a F6854]
gi|254898283|ref|ZP_05258207.1| hypothetical protein LmonJ_00670 [Listeria monocytogenes J0161]
gi|254912224|ref|ZP_05262236.1| type IV leader peptidase family protein [Listeria monocytogenes
J2818]
gi|254936552|ref|ZP_05268249.1| type IV leader peptidase [Listeria monocytogenes F6900]
gi|47014898|gb|EAL05846.1| type IV leader peptidase family protein [Listeria monocytogenes
str. 1/2a F6854]
gi|258609146|gb|EEW21754.1| type IV leader peptidase [Listeria monocytogenes F6900]
gi|293590198|gb|EFF98532.1| type IV leader peptidase family protein [Listeria monocytogenes
J2818]
Length = 236
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++ I + L F ++D+F +PN + IV + A L + + + +
Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLAIIATLYNQTLMALIYSGGISCLFY 157
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ F F +G GD+K+L + + G+ + F + + IL ++ ++ N
Sbjct: 158 LLFFIIFRK-GIGLGDIKILIILSTFLGFKIGYYIFFLAIIMGTIILLTALMLKKVKKNK 216
>gi|296270182|ref|YP_003652814.1| peptidase A24A prepilin type IV [Thermobispora bispora DSM 43833]
gi|296092969|gb|ADG88921.1| peptidase A24A prepilin type IV [Thermobispora bispora DSM 43833]
Length = 222
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 15/129 (11%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
D + +P+ +++ + G AL V ++VF + + + +G G
Sbjct: 95 IDWRTRRLPDAITLPSYPVLIALLAPSGR-LPGAALAAAVLIVVFGVLWLIRPAD-LGLG 152
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
DVKL + G G + + ++ + +
Sbjct: 153 DVKLSGLIGLVTGS-------------GGPAAAATAVLAGVLLAALYAIALLARGRGSRD 199
Query: 145 NKIPYGIAI 153
P+G +
Sbjct: 200 TVFPFGPFL 208
>gi|149909549|ref|ZP_01898203.1| hypothetical protein PE36_17125 [Moritella sp. PE36]
gi|149807454|gb|EDM67405.1| hypothetical protein PE36_17125 [Moritella sp. PE36]
Length = 144
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 17/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + +LI F D+ S + N + +V+ L G L
Sbjct: 3 LQALGWLIIAILSCFICYQDVKSRKVRNDIVMVLATVTFFLMILTGNYAATYI-----CL 57
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+F++ N++ GD+KLL + ++ L+F+ G + V+ L++R
Sbjct: 58 GLFLVGLLLTQVNVIAAGDIKLLMAFSLAIKPDLILLTFVVIGFTGGLLAVVYYLSIR-- 115
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ K N IPY + I +++ S
Sbjct: 116 ----------MNKLSKQDNGIPYALPICFSSVLAIAAS 143
>gi|159905108|ref|YP_001548770.1| peptidase A24A domain-containing protein [Methanococcus maripaludis
C6]
gi|159886601|gb|ABX01538.1| Peptidase A24A domain protein [Methanococcus maripaludis C6]
Length = 346
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 13/138 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ +L ++ A +D+ +IP+ V I+ML L + ++ + +
Sbjct: 7 LILGTYLFNFLLILTATYTDIKERIIPHFVIILMLIVNLPVGYY-FFGFDAVVSFFATLI 65
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS------FLSFLFFVAILGGILSVFI 120
+ I+ MGGGDVK+ T+ + F L + A+ I +
Sbjct: 66 LCLILGV------GMGGGDVKMFTALSPIFAAETIYFVPKNILILIGLSALFAAIFPMTK 119
Query: 121 LTVRMITNHIPIFGMFVP 138
+ + IP
Sbjct: 120 ILKNYWKDIIPSSAYLAM 137
>gi|320155486|ref|YP_004187865.1| ABC transporter permease [Vibrio vulnificus MO6-24/O]
gi|319930798|gb|ADV85662.1| ABC-type uncharacterized transport system, permease component
[Vibrio vulnificus MO6-24/O]
Length = 172
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 1/135 (0%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ FCL+ A+ D IPN ++ L ++ D + L + G I F
Sbjct: 6 LIWFCLLVVAVYDARDNRIPNA-WLLPLTLLACLHWVGKGDSSQLFLAIGAGAIYFGSGL 64
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
F M GDVKLL V GW + G + F++
Sbjct: 65 VLFFLRAMSPGDVKLLGVVGVVIGWDAMGTVAYWITLSAGLVALFFMMLHYAQYPDSLQK 124
Query: 134 GMFVPKSFLMKNKIP 148
+ M ++P
Sbjct: 125 LVGRYSFQAMSGQVP 139
>gi|78186530|ref|YP_374573.1| hypothetical protein Plut_0652 [Chlorobium luteolum DSM 273]
gi|78166432|gb|ABB23530.1| hypothetical protein Plut_0652 [Chlorobium luteolum DSM 273]
Length = 246
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 22/139 (15%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIALHLLVGLIVFIICFCFFA----FN 79
D + M+P+RV + + + L ++ A + L++ +
Sbjct: 111 DWDTTMLPDRVVLPLGLAGLGASYAGLTHQSLIASAASATIMLVMLGGLGWVYQQVKGVR 170
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MGGGD+KLL + A W+G + G I ++ R N P
Sbjct: 171 GMGGGDLKLLAALAAWWGMQGVLYIVIAS----GIITVLWYAVWRQFKNFSPEAEW---- 222
Query: 140 SFLMKNKIPYGIAISMGGL 158
P+G AI + L
Sbjct: 223 --------PFGPAIVIAAL 233
>gi|319782180|ref|YP_004141656.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168068|gb|ADV11606.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 179
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 7/157 (4%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNR---VSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ ++ L A D + I NR + + + LL L + + L
Sbjct: 6 ALLLKVLAIPLLARIAWVDFTTQKISNRDVLLLLCLGAGGLLLLSLQSGSWWDMGLSAGA 65
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
GL++F+ F+A +G GDVKL+ + S + F +L V+
Sbjct: 66 GLLLFVAFLPFWALRKIGAGDVKLIAV----VPFLISGGALAVFSVLLLVFALATAAIVK 121
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + K +P+G+ IS+ + +
Sbjct: 122 NPFLLPAGAFRLIVQHLDRKGMVPFGVPISLAAICTL 158
>gi|256379263|ref|YP_003102923.1| peptidase A24A prepilin type IV [Actinosynnema mirum DSM 43827]
gi|255923566|gb|ACU39077.1| peptidase A24A prepilin type IV [Actinosynnema mirum DSM 43827]
Length = 194
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 1/130 (0%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L + V + DL +PN +++ L + G D + + +
Sbjct: 57 IPLTLAWLGVALTVVDLRHRRLPNALTLPAYPVLFLLLLMSGADPLRALAGCTLFGGLHL 116
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ +GGGDVKL L + + L R
Sbjct: 117 LIHLL-RPTALGGGDVKLSAPLGAVLACVSWSALPLATALASLTTVLLSRLPSRKHPPWS 175
Query: 131 PIFGMFVPKS 140
G + S
Sbjct: 176 LPHGPGLLGS 185
>gi|320158380|ref|YP_004190758.1| type IV prepilin peptidase TadV/CpaA [Vibrio vulnificus MO6-24/O]
gi|319933692|gb|ADV88555.1| type IV prepilin peptidase TadV/CpaA [Vibrio vulnificus MO6-24/O]
Length = 146
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 16/148 (10%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ F ++A+ +D S +I N + + AFL G + LL+ + F
Sbjct: 3 LAITLIFFTALYASFTDAKSRVISNHTVVFAFLCCFIFAFLNGY----LLHSLLIATLCF 58
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
F + GGGD K V + + + G + +
Sbjct: 59 AFSFILWLLGFWGGGDAKYFPVMMVGVKPDYAIEAICYIGLFGGITVIGVYV-------- 110
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGG 157
+ K + K IPYGI IS
Sbjct: 111 ----YCLIAKKEIKKIGIPYGIPISASC 134
>gi|212709360|ref|ZP_03317488.1| hypothetical protein PROVALCAL_00396 [Providencia alcalifaciens DSM
30120]
gi|212688272|gb|EEB47800.1| hypothetical protein PROVALCAL_00396 [Providencia alcalifaciens DSM
30120]
Length = 219
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 21/139 (15%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-----YELIALHLLVGLIVFIICFCFFAF 78
+ D+ + +PN ++ +L +L +++ + + ++ +
Sbjct: 86 VIDIKTGYLPNILTYPLLLLGVLFQWIMPTGNILSAMYALIFSYIGLEVITTLVEKLRRR 145
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
MG GD KL+ + + W G ++ I +
Sbjct: 146 PQMGRGDFKLIAACSAWLGIFYLPYFLGLAASLGLLHFLWLIWRGKQKVV---------- 195
Query: 139 KSFLMKNKIPYGIAISMGG 157
IP+G AI
Sbjct: 196 ------QSIPFGPAIMCSA 208
>gi|115524674|ref|YP_781585.1| general secretion pathway protein O [Rhodopseudomonas palustris
BisA53]
gi|115518621|gb|ABJ06605.1| general secretion pathway protein O [Rhodopseudomonas palustris
BisA53]
Length = 226
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 49/178 (27%), Gaps = 38/178 (21%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL------TAFLLGMDYELIAL 60
+ + ++ SDL +IP+ S+ + L + +
Sbjct: 52 IQACFVAAWWIFVMVVIRSDLADFLIPDHASLGIALLGLAAIGTRSLWIPEPSPWPSLPW 111
Query: 61 H------------LLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLS 104
V + F F+ +G GDVKL ++A+W L+
Sbjct: 112 SHGAIAVLAAMVQGATAAAVLWVVGRTFRAIRGFDGLGFGDVKLAGASAIWLDPWQQALA 171
Query: 105 FLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
G++ + +P+G ++ I+Y
Sbjct: 172 LHLATLTAIGVVLL----------------TRNEGLRAGDGALPFGAFLAPAAWITYL 213
>gi|294101275|ref|YP_003553133.1| peptidase A24A prepilin type IV [Aminobacterium colombiense DSM
12261]
gi|293616255|gb|ADE56409.1| peptidase A24A prepilin type IV [Aminobacterium colombiense DSM
12261]
Length = 226
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ + L F+AL+DL+S I + V VM + + G L + + IV +
Sbjct: 72 MAFLLTVGLFFSALTDLYSGYIFDAVPAVMGVGSFIFRWAAGTSPLLDGIMGALAGIVIM 131
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ + MG GD+KL+ + G + + + G + +LT R
Sbjct: 132 AFVRWISRGGMGIGDIKLIGGMGLGLGLPLTLYGLYIGILVGGIVAGWLLLTCR------ 185
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
K IP+G I++GG+I+ +
Sbjct: 186 ----------VHRKQPIPFGPFIALGGIIALATAPFLGTYFN 217
>gi|294054873|ref|YP_003548531.1| Citrate transporter [Coraliomargarita akajimensis DSM 45221]
gi|293614206|gb|ADE54361.1| Citrate transporter [Coraliomargarita akajimensis DSM 45221]
Length = 608
Score = 39.8 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ + L LV ++ DL +P +++++ + + M+ ++H +++
Sbjct: 416 APIALTILAMLVAVSVLDL----LPLTITVLLAALAAVFTRCMTMEDAYRSIHWNSIVLI 471
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ A + GG + + + S L F A+ + + +
Sbjct: 472 AGLLPMADALQVTGGTEFIVDGLMGLL----GSAPYSLMFTALFFLTAGIGLFLSNTASA 527
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + IPY IA+ + +Y
Sbjct: 528 VLIAPIAITTAQIQEVSPIPYAIAVMIAASAAY 560
>gi|71736793|ref|YP_276534.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557346|gb|AAZ36557.1| type IV leader peptidase family [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 157
Score = 39.8 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 4/151 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ V A D I N +++ G + + +
Sbjct: 4 LFLLLVWFVICAEQDARRKHISNGLTLGATTLAAAWLAGTGTTWLGAPPLEAALALALEL 63
Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+A +G GDVKL+ + A+ +F+ + + I
Sbjct: 64 GLTLPGYALGKLGAGDVKLMAALALASDSVYLLCTFIGAGIAALTWVLLARKVQHHINQR 123
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++ +K P+ + G L++
Sbjct: 124 VAQRYAYMFP--DAPDKYPFSPFLLAGLLLT 152
>gi|307293353|ref|ZP_07573199.1| Prepilin peptidase [Sphingobium chlorophenolicum L-1]
gi|306881419|gb|EFN12635.1| Prepilin peptidase [Sphingobium chlorophenolicum L-1]
Length = 253
Score = 39.8 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 42/139 (30%), Gaps = 20/139 (14%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFIICFCFFAF---- 78
+ D +P+ +++ + + +G + + +
Sbjct: 115 VLDKRHFWLPDALTLPLAFLGFTIGLWTTNAIMIDRIIGAAIGYLALLAVALGYRRFRGR 174
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+G GD KLL + WFGW +L + + M
Sbjct: 175 EGLGLGDAKLLGALGAWFGWQALPF---------------ILLLAASLGLLAILAAMATG 219
Query: 139 KSFLMKNKIPYGIAISMGG 157
++ ++P GI +++
Sbjct: 220 RAVDGTTRVPLGIFLAVAA 238
>gi|269977323|ref|ZP_06184296.1| type IV peptidase [Mobiluncus mulieris 28-1]
gi|269934626|gb|EEZ91187.1| type IV peptidase [Mobiluncus mulieris 28-1]
Length = 227
Score = 39.8 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIV--MLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ + D ++PNRV + + LL+A + L + V + I
Sbjct: 81 FLTPVALVLIVIDARWHLLPNRVVLPATGVLLPLLSAIAIDRGDWEALLRVWVWGLGMGI 140
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +G GDVKL A W G + + LF ++LGG+ ++ L R T
Sbjct: 141 LLFLVSCFGLGMGDVKLGIPLAAWLGLYSWVAPVIMLFLASLLGGLFALTRLLARKATLQ 200
Query: 130 IPIFGMFVP 138
+
Sbjct: 201 SHLAFGPWM 209
>gi|209809168|ref|YP_002264706.1| type IV leader peptidase [Aliivibrio salmonicida LFI1238]
gi|208010730|emb|CAQ81121.1| type IV leader peptidase [Aliivibrio salmonicida LFI1238]
Length = 144
Score = 39.8 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 18/155 (11%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ + + F D+ +I NR +++ ++ ++
Sbjct: 2 NIFLIIWWFLLAAISYFICYQDVTKRIISNRACMLVFIICIMIGV-----VTDNYENIFY 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
I+FI F F+FNI+ GD+KL + ++ L +LGGI+++ L +
Sbjct: 57 PAIIFITGFVLFSFNIIAAGDIKLAAAFSIAVNPKYQLLVITII-LLLGGIIALGQLAWK 115
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
K+ + +PYG+ I +G L
Sbjct: 116 K------------CKTNEKIDGVPYGVPICIGYLF 138
>gi|18312742|ref|NP_559409.1| hypothetical protein PAE1599 [Pyrobaculum aerophilum str. IM2]
gi|18160222|gb|AAL63591.1| hypothetical protein PAE1599 [Pyrobaculum aerophilum str. IM2]
Length = 203
Score = 39.8 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 7/144 (4%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ A + L A+ D+ + I + + + Y L V
Sbjct: 1 MLQEAAVIALGVVLAAASWQDVRTREI-DAWIFAVGALPAAALIYMNFPYPFYLFSLAVS 59
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVW--FGWTPSFLSFLFFVAILGGILSVFILTV 123
L++ + G D + P+ + ++L + V I
Sbjct: 60 LVLASVMRFL----GSGYADSIAMALIGSAPPVPPFPTAFIVILAGSVLLPVHMVHIYLA 115
Query: 124 RMITNHIPIFGMFVPKSFLMKNKI 147
+ + K +
Sbjct: 116 NRGKPCEMTSLEKLTHICISKEEF 139
>gi|238922466|ref|YP_002935979.1| hypothetical protein EUBREC_0040 [Eubacterium rectale ATCC 33656]
gi|238874138|gb|ACR73845.1| Hypothetical protein EUBREC_0040 [Eubacterium rectale ATCC 33656]
Length = 162
Score = 39.8 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 1/111 (0%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L AA+ D + I NR+ + LG L + G I L + +I +
Sbjct: 1 MLYILLTVAAIGDFKNYRISNRLILTGLGCAFLFRLVGGK-VASIIWFLPDIVFPVVILY 59
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ I+G GD+KL + + + L G + ++ +
Sbjct: 60 FLYLSGILGAGDIKLFSVVCAFTNLRFTALCMAAAFVAAAGYGLISMVLKK 110
>gi|296117819|ref|ZP_06836402.1| signal peptidase [Corynebacterium ammoniagenes DSM 20306]
gi|295969050|gb|EFG82292.1| signal peptidase [Corynebacterium ammoniagenes DSM 20306]
Length = 150
Score = 39.8 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
S + LI + + D+ +P+ +++ + G L + + + L L+ ++
Sbjct: 7 SFLLLIALVWALVLCVYDIRQRRLPDFLTLPVGGLALA---WILSTLQWVGLWGLIWPVL 63
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+++ + MGGGD+KL + ++ + +A+ + V+ + +R +
Sbjct: 64 YLVLAVISHGHGMGGGDIKLAVPLGIVIAVYAGVVAVMVAIALTAVVAVVWGMGLRWKGH 123
Query: 129 HIPIFGMFVPKSFLM 143
+ P M
Sbjct: 124 RQALRFSDPPNGPAM 138
>gi|305680875|ref|ZP_07403682.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
gi|305659080|gb|EFM48580.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
Length = 152
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 5/127 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + +I + D+ +P+ +++ +L ++ A +
Sbjct: 7 MWPAVTIVIGAAWALALCWYDMKYQRLPDNLTMPVLCCLIIIAARMN-----YVALFGGL 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F+ +GGGD+KL S + G + F L ++ R
Sbjct: 62 VWFFLYFMIALLVGGIGGGDIKLAPSLGIIIGADGIWPVFTAIFLAQMFTLVGAMVFRRT 121
Query: 126 ITNHIPI 132
H P
Sbjct: 122 KIPHGPA 128
>gi|222529858|ref|YP_002573740.1| peptidase A24A domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456705|gb|ACM60967.1| peptidase A24A domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 258
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 16/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFS--AMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHL 62
V + + + L++ ++ D + + + + + +L + + L
Sbjct: 95 VSAFLLFLIGCILIYISVVDFKTYEMCVTSILLLAILKFGFEVSLKGVSKTSMTFVVLGP 154
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ ++ + + F MG GDV LL + V F + + I +
Sbjct: 155 ILNALLVGLIYLFTRGYAMGLGDVLLLMAGGVGFTIRQAIVCNFVAFFIAFLYVL----- 209
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F + K K +IP+G IS G +S
Sbjct: 210 -------GLKFIQSILKGNKKKREIPFGPFISTGIFVS 240
>gi|283778978|ref|YP_003369733.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
gi|283437431|gb|ADB15873.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
Length = 145
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
DL + +P+ +S + ++ G+ + L GL+ F I F F +G
Sbjct: 17 TWHDLRTREVPDWISYALGLWGIVCIAC-GLGNNSWSGVFLGGLLAFAITFPFCWLGGLG 75
Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
G DV+L+ + FG + L + + G + V + + + P +
Sbjct: 76 GADVRLMVGLGMIFGPSVLLLLAILTALLGGMLALVAVARGQKDYAYCPAILGAL 130
>gi|224542188|ref|ZP_03682727.1| hypothetical protein CATMIT_01363 [Catenibacterium mitsuokai DSM
15897]
gi|224524879|gb|EEF93984.1| hypothetical protein CATMIT_01363 [Catenibacterium mitsuokai DSM
15897]
Length = 204
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 28/154 (18%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + C ++ DL IP+ ++ L + + + LL +
Sbjct: 70 ILYLSHIASLTCFYIISIIDLHIYEIPDIYLLISLLCSF-----KTIYLKESLILLLFLI 124
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + + +GGGD+K+L ++ G + + +
Sbjct: 125 LFVYLFYKISGKEGLGGGDIKMLGVCSLSLGIYQTLSILSIACFLGIIFSFI-------- 176
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
K IP+G I++G L
Sbjct: 177 ---------------KQKKMIPFGPFIALGWLTI 195
>gi|167902902|ref|ZP_02490107.1| family A24A unassigned peptidase [Burkholderia pseudomallei NCTC
13177]
Length = 109
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ G + + F FFA +MG DVK+ W G P+ ++ G+ ++ ++
Sbjct: 1 MIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGL-PALPRLWVVASVAAGVHALALM 59
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPY 149
+ G + + PY
Sbjct: 60 LLTRTPPGSLGRGDAPAFALGARRAAPY 87
>gi|313235558|emb|CBY11013.1| unnamed protein product [Oikopleura dioica]
Length = 840
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 37 SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD-----VKLLTS 91
+ + + + + H+ + ++ F + + G D + L S
Sbjct: 702 VLKLAVIAIFLFLFGLLPWVDNYAHIFGFISGILLSFALLPYIVFGKFDQGRKMFQALAS 761
Query: 92 TAVWFGWTPSFLSFLFFV 109
A W T L ++
Sbjct: 762 IAAWLALTVVLLILFYYS 779
>gi|253581155|ref|ZP_04858414.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847592|gb|EES75563.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
Length = 347
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA--FLLGMDYELI 58
MK +++ ++ L+ + ++D + +I N+V +V + ++ ++ +
Sbjct: 1 MKLCEILLMSIILVLG---IVVIVTDFHAGVIKNKVLLVAIVFGVIINSIYITFFAKNFL 57
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
++LL V +I +AF GD KL+ + A S L + I
Sbjct: 58 LVYLLNWFAVSLISVLLYAFRFWAAGDSKLMITLAFLIPARYYENSLLLISGVYYIIFIF 117
Query: 119 FI 120
+
Sbjct: 118 LL 119
>gi|227875425|ref|ZP_03993566.1| possible peptidase A24A, prepilin type IV [Mobiluncus mulieris ATCC
35243]
gi|227843979|gb|EEJ54147.1| possible peptidase A24A, prepilin type IV [Mobiluncus mulieris ATCC
35243]
Length = 227
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIV--MLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ + D ++PNRV + + LL+A + L + V + I
Sbjct: 81 FLTPVALVLIVIDARWHLLPNRVVLPATGVLLPLLSAIAIDRGDWEALLRVWVWGLGMGI 140
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +G GDVKL A W G + + LF ++LGG+ ++ L R T
Sbjct: 141 LLFLVSCFGLGMGDVKLGIPLAAWLGLYSWVAPVIMLFLASLLGGLFALTRLLARKATLQ 200
Query: 130 IPIFGMFVP 138
+
Sbjct: 201 SHLAFGPWM 209
>gi|256027603|ref|ZP_05441437.1| integral membrane protein [Fusobacterium sp. D11]
gi|289765562|ref|ZP_06524940.1| integral membrane protein [Fusobacterium sp. D11]
gi|289717117|gb|EFD81129.1| integral membrane protein [Fusobacterium sp. D11]
Length = 165
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 6/142 (4%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFN 79
D+ IPN ++ +L + + +D I I+ +
Sbjct: 16 VMYIDINKKYIPNILNFSILVLSIFICGIDKIDSFFIGASCYTLPILIFYGYISDILKKE 75
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+ G GD+KL+ + FL + S+ L + + V
Sbjct: 76 VFGFGDIKLIIPLGGLL-YQGEINIFLQIYIFYLLVFSLATLYIIIYIVISYCRNKSVK- 133
Query: 140 SFLMKNKIPYGIAISMGGLISY 161
+ ++ + I + +I Y
Sbjct: 134 --IRGVELAFAPYICLAFIIIY 153
>gi|145410|gb|AAC13988.1| leader peptidase [Escherichia coli str. K-12 substr. W3110]
Length = 110
Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 23/83 (27%)
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
V V+ + +G GD KLL + W GW + L G V
Sbjct: 17 VAGYGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGYAIV 76
Query: 119 FILTVRMITNHIPIFGMFVPKSF 141
L R I S
Sbjct: 77 SQLLQRRTITTIAFGPWLALGSM 99
>gi|16272251|ref|NP_438463.1| type 4 prepilin-like protein specific leader peptidase [Haemophilus
influenzae Rd KW20]
gi|260581235|ref|ZP_05849054.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|1170762|sp|P44620|LEP4_HAEIN RecName: Full=Putative type 4 prepilin-like proteins leader
peptide-processing enzyme
gi|1573264|gb|AAC21960.1| type 4 prepilin-like protein specific leader peptidase (hopD)
[Haemophilus influenzae Rd KW20]
gi|260092160|gb|EEW76104.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
Length = 230
Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ + L + D +I + +L L A L + A
Sbjct: 84 IFTVWIGLTLIILWTISYLDWHYQLISTTPCLWLLTLGLFGADNNFSLLTLSESIKSAAS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+V +++ + ++ G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYVIYWLAKFYYGKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI 201
>gi|306818736|ref|ZP_07452458.1| possible prepilin peptidase [Mobiluncus mulieris ATCC 35239]
gi|304648422|gb|EFM45725.1| possible prepilin peptidase [Mobiluncus mulieris ATCC 35239]
Length = 227
Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIV--MLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ + D ++PNRV + + LL+A + L + V + I
Sbjct: 81 FLTPVALVLIVIDARWHLLPNRVVLPATGVLLPLLSAIAIDRGDWEALLRVWVWGLGMGI 140
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +G GDVKL A W G + + LF ++LGG+ ++ L R T
Sbjct: 141 LLFLVSCFGLGMGDVKLGIPLAAWLGLYSWVAPVIMLFLASLLGGLFALTRLLARKATLQ 200
Query: 130 IPIFGMFVP 138
+
Sbjct: 201 SHLAFGPWM 209
>gi|167628701|ref|YP_001679200.1| type iv prepilin-like proteins leader peptide-processing enzyme
[Heliobacterium modesticaldum Ice1]
gi|167591441|gb|ABZ83189.1| type iv prepilin-like proteins leader peptide-processing enzyme
[Heliobacterium modesticaldum Ice1]
Length = 153
Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 22/148 (14%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
I L+ A+L D+ +IP+ + + + + + + LL L +
Sbjct: 19 IFIVLLLTASLIDVRKRIIPDAICLAIALTGFICFTPVK---------LLGCLSALPLLI 69
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+ MGGGD+KL+ + G+ + + +A + + + R+ P
Sbjct: 70 AALVWGGMGGGDIKLMAAAGFVLGFRGGMAAMVMGLAAMLLFYAGCFMVQRLRKRDCP-- 127
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISY 161
P +S G + +Y
Sbjct: 128 -----------RAFPLAPFLSAGCIAAY 144
>gi|116074742|ref|ZP_01472003.1| putative type 4 prepilin peptidase [Synechococcus sp. RS9916]
gi|116067964|gb|EAU73717.1| putative type 4 prepilin peptidase [Synechococcus sp. RS9916]
Length = 268
Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 28/155 (18%)
Query: 28 FSAMIPNRVSIVMLGSFLLTAFLLGMDYEL-----IALHLLVGLIVFIICFCFFAFN--- 79
+P + + + L + + + HLL ++ A
Sbjct: 123 DHLWLPEPLCRAGVIAGLTASLIAASTLMTGGAALMLSHLLGASAALLVLEGLSALAEKA 182
Query: 80 ----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
+G GD KL W G ++ L + I S+ ++ R
Sbjct: 183 LGQPALGLGDAKLAALGGAWLGLQGVAIAMLLAIVGGAVIGSLARISGR----------- 231
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ P+G I+ G + + +
Sbjct: 232 -----LGPREPFPFGPFIATGIWLVWLQGPNWWWQ 261
>gi|116694137|ref|YP_728348.1| flp pilus assembly protein, protease CpaA [Ralstonia eutropha H16]
gi|113528636|emb|CAJ94983.1| flp pilus assembly protein, protease CpaA [Ralstonia eutropha H16]
Length = 130
Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 5/110 (4%)
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ + + +A M GDVK L ++ G L+++ + + +
Sbjct: 21 RLIGAGLGLAVTLPVYALGQMAAGDVKFLVVAGLFTGPQGLVLAWVVGNLLGLVHALLAL 80
Query: 121 LTVRMITNHIPI-----FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
G F IPY +++G L +
Sbjct: 81 ALGGRAPATSQAIDHQDSGPIPTAQFSRARGIPYAAYLAVGVLAWMAAGH 130
>gi|146296444|ref|YP_001180215.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410020|gb|ABP67024.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 152
Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 5/134 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + + LV AA+ D IPN +++L +L Y + + +
Sbjct: 4 MSKVILSVSFLLILVVAAIYDFKKREIPNFTVVLLLFIA-AVRVILNKSYSNVIIFAIYT 62
Query: 66 LIVFIICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
L F I I +G GD+KLL+ +++FG+ F+ LF G + +
Sbjct: 63 LFFFAIYIFAERRGIYLLGEGDIKLLSVLSLYFGFD--FIKVLFLACTTGFAMGLATGIK 120
Query: 124 RMITNHIPIFGMFV 137
+ +
Sbjct: 121 KKTYLKTYVPLAPF 134
>gi|227822849|ref|YP_002826821.1| peptidase A24A domain protein [Sinorhizobium fredii NGR234]
gi|227341850|gb|ACP26068.1| peptidase A24A domain protein [Sinorhizobium fredii NGR234]
Length = 157
Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + VF I L AL D ++IP+ ++++ + + +LLG L + V
Sbjct: 1 MEALVFAILMVQLTVIALIDARRSIIPDLCNVLLGLTGIAAHWLLGSFDGLRIVSGAVVF 60
Query: 67 IVFIICFCFFAFN-----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F +G GDVK+ + W L + +
Sbjct: 61 GGTFALARAVHFRARGQIGLGLGDVKMAAAAGCWITIASFPLFLAAASFSALLFVLAML- 119
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
V + L ++P+G +++G +S+
Sbjct: 120 --------------PVWRGDLRTRRVPFGPFLALGLAVSWL 146
>gi|116872979|ref|YP_849760.1| signal peptidase, cleaves prepilin-like proteins [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|116741857|emb|CAK20981.1| signal peptidase, cleaves prepilin-like proteins [Listeria
welshimeri serovar 6b str. SLCC5334]
Length = 236
Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
++ + L F ++D+ +PN + + + LL L + + + +++ + ++
Sbjct: 99 IYCSIYYFLAFFLITDILYMYVPNAIMFLFFSTLLLFYLLFQLPFSTLVYSIILSSLFYL 158
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ + F +G GD+K+ + G+ F +LG + L ++ I
Sbjct: 159 LFYLIFRK-GIGLGDIKIFIVLGSFLGFKMG-YFIFFSAILLGTFSLLTALALKKIKKDN 216
Query: 131 PIFGMFV 137
+ +
Sbjct: 217 QVPFVPY 223
>gi|225021337|ref|ZP_03710529.1| hypothetical protein CORMATOL_01356 [Corynebacterium matruchotii
ATCC 33806]
gi|224945719|gb|EEG26928.1| hypothetical protein CORMATOL_01356 [Corynebacterium matruchotii
ATCC 33806]
Length = 146
Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 5/127 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + +I + D+ +P+ +++ +L ++ A +
Sbjct: 1 MWPAVTIVIGAAWALALCWYDMKYQRLPDNLTMPVLCCLIIIAARMN-----YVALFGGL 55
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ F+ +GGGD+KL S + G + F L ++ R
Sbjct: 56 VWFFLYFMIALLVGGIGGGDIKLAPSLGIIIGADGIWPVFTAIFLAQMLTLVGAMVFKRT 115
Query: 126 ITNHIPI 132
H P
Sbjct: 116 KIPHGPA 122
>gi|329122124|ref|ZP_08250732.1| prepilin peptidase [Dialister micraerophilus DSM 19965]
gi|327466931|gb|EGF12447.1| prepilin peptidase [Dialister micraerophilus DSM 19965]
Length = 178
Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 18/155 (11%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
+F A DL S++I + S+ + L AF+ + +L G+ II F F
Sbjct: 40 IFGAYEDLKSSLISDSWSLSIGICGLFHAFIFSHIKYSLLSFILTGVFYLIIYFLF--KK 97
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
G GDV + ++W + + ++ L +
Sbjct: 98 GFGAGDVIFSLALSLWLNPKYILIFLWISAFSSLIFIFLYFLICKK-------------- 143
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
K IP+ +++GG+I+Y Y + + +
Sbjct: 144 --HFKKNIPFIPFLTIGGIITYFYGYEIYLIIETI 176
>gi|153800371|ref|ZP_01954957.1| leader peptidase PilD [Vibrio cholerae MZO-3]
gi|124123997|gb|EAY42740.1| leader peptidase PilD [Vibrio cholerae MZO-3]
Length = 253
Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 22/161 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
+ + + + D +IP+ + I + + F + + + +A L
Sbjct: 109 IELFLLFSLVAHIYCIVIIDYKDKLIPDALLISLFITGCGYHFFVSEIAWYEVAKSLTFT 168
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
LIV + + F+ ++G GD+KL +V+ + L V I
Sbjct: 169 LIVIGLTYAFWKCLDIPMVLGLGDIKLFLVLSVFLTFDEFLLLIPLSVFI---------- 218
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
I + IP+G +I +G L +
Sbjct: 219 -------SILAYYFEKKARHTSVLVIPFGPSICLGFLFLFF 252
>gi|171920999|gb|ACB59182.1| TadV [Actinobacillus suis ATCC 33415]
Length = 143
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
+DL +I NR+ + +L + ++L+ + L+ I F F FNI+G
Sbjct: 21 WTDLRYRLISNRIIMALLLVTIPFSYLVHGTLFWLP-----ALLCLAIGFILFMFNIIGA 75
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
GDVKLL + + ++ + L R +
Sbjct: 76 GDVKLLAVLMLAIPSHFAVFFLFLTACAGLLLIIIGWLFYRQ---------------SIR 120
Query: 144 KNKIPYGIAISMGGLISYP 162
+ +PYGIAIS+G L +
Sbjct: 121 EKGLPYGIAISVGFLTTLL 139
>gi|72161493|ref|YP_289150.1| hypothetical protein Tfu_1089 [Thermobifida fusca YX]
gi|71915225|gb|AAZ55127.1| hypothetical protein Tfu_1089 [Thermobifida fusca YX]
Length = 268
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 42/174 (24%), Gaps = 23/174 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
A + DL +P + L + L L
Sbjct: 110 EIAALAFLALWGTLLSSIDLRVTRLPRLLVRPAYPIALALLGAAALTTPHGGTAFLHALG 169
Query: 68 VFIICFCFFAF------NIMGGGDVKLLTSTAVWFGWTPSFLSF--LFFVAILGGILSVF 119
+ F+ MG GDV L ++ GW F + + +
Sbjct: 170 GMAALWGFYRLLRAIYPPGMGWGDVTLSGLIGLYLGWDGWTPVVSGTFLAFLAFSCVGLG 229
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ + +K+ +P G + G L + L
Sbjct: 230 LVLLGRA---------------SLKSHLPLGPFMVGGALAVLLFGDPIPLLLAA 268
>gi|312195535|ref|YP_004015596.1| peptidase A24A prepilin type IV [Frankia sp. EuI1c]
gi|311226871|gb|ADP79726.1| peptidase A24A prepilin type IV [Frankia sp. EuI1c]
Length = 260
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 20/157 (12%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-------VMLGSFLL------- 46
++ S + +L V A D +P+ + + +L +
Sbjct: 88 LRCSDLPALPAYLYLTDVGVVLAFVDARVHRLPDVIVLSSYPVLAALLVLGAVVDRLTWG 147
Query: 47 TAFLLGMDYELIALHLLVGLIVFIICFCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFL 103
VG V ++ F + +G GDVKL GWT
Sbjct: 148 FWGDGNWAIGAQLTGAAVGAAVPLLFFGLLHLIPRSGLGLGDVKLSGLLGAALGWTDEIY 207
Query: 104 SFLFFVAIL---GGILSVFILTVRMITNHIPIFGMFV 137
L V + G+ + F+L R I
Sbjct: 208 RVLLAVILGIFSAGLWAAFLLVTRRARRTDAIPYGPH 244
>gi|294781783|ref|ZP_06747116.1| integral membrane protein [Fusobacterium sp. 1_1_41FAA]
gi|294481893|gb|EFG29661.1| integral membrane protein [Fusobacterium sp. 1_1_41FAA]
Length = 160
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 6/154 (3%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + L+F D+ IPN ++ +L + + ++ I V I+
Sbjct: 4 ILIIFLYIALIFVMYIDINKKYIPNVLNFSILILSVFIRGISEIENFFIGAACYVLPILI 63
Query: 70 IICFC--FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + G GD+KL+ + + + ++ L VF + IT
Sbjct: 64 FYGYVSDILKREVFGFGDIKLIIALGGLLYHSEINIFLQIYIF----YLLVFSIATLYIT 119
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
++ ++ + +I + I + I Y
Sbjct: 120 FYLCVYFCKNRALKIRGVEIAFAPYICIAFFIIY 153
>gi|237741038|ref|ZP_04571519.1| integral membrane protein [Fusobacterium sp. 4_1_13]
gi|229431082|gb|EEO41294.1| integral membrane protein [Fusobacterium sp. 4_1_13]
Length = 166
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 6/141 (4%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFNI 80
D+ IPN ++ +L + + +D I I+ + +
Sbjct: 17 MYIDINKKYIPNILNFSILVLSIFICGIDKIDIFFIGASCYTLPILIFYGYMSDILKKEV 76
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
G GD+KL+ + + FL + S+ L + + +
Sbjct: 77 FGFGDIKLIIALGGLL-YQGEINIFLQIYIFYLLVFSLATLYIIIYIVISYCRNKPLK-- 133
Query: 141 FLMKNKIPYGIAISMGGLISY 161
+ ++ + I +I Y
Sbjct: 134 -IRGVELAFAPYICFAFIIIY 153
>gi|148827450|ref|YP_001292203.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae PittGG]
gi|148718692|gb|ABQ99819.1| putative type 4 prepilin-like protein specific leader peptidase
[Haemophilus influenzae PittGG]
Length = 214
Score = 39.1 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 6/112 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ F + L + D +I + + +L L A L + A
Sbjct: 84 IFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAAS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
+V ++ I ++ G GD L + + L +
Sbjct: 144 FFIVFYAIYWIAKFYYGKEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLG 195
>gi|227819324|ref|YP_002823295.1| CpaA pilus assembly protein [Sinorhizobium fredii NGR234]
gi|227338323|gb|ACP22542.1| CpaA pilus assembly protein [Sinorhizobium fredii NGR234]
Length = 185
Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 24/181 (13%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL------ 63
+ + L++AA SD IPN V + ++ + L A L + E L
Sbjct: 7 ILIVATVLLLLYAAWSDFRLWKIPNSVVLALMAVYALGAALKLLTAEQAGGALGELMADD 66
Query: 64 ----------------VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
GL++F + F ++F + G GD KL V+ GW +F
Sbjct: 67 LGAALFSAHGLAGDVGAGLLLFALGFGLWSFRLFGAGDAKLFLPIGVFIGWNGMLPFAVF 126
Query: 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++GGI ++ IL + M + K+PYG+ + L F
Sbjct: 127 L--LIGGIAALLILKLPMPLQLAHFSVAMRLEEIRATRKVPYGVIMVAATLPVIALRPSF 184
Query: 168 K 168
Sbjct: 185 A 185
>gi|312139251|ref|YP_004006587.1| prepilin peptidase [Rhodococcus equi 103S]
gi|311888590|emb|CBH47902.1| putative prepilin peptidase [Rhodococcus equi 103S]
Length = 262
Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 7/138 (5%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLLV 64
+ +L + A+ D+ +PN + ++ + L ++ D+ + +
Sbjct: 100 ATPAYLWFAAVGIALAVIDIDCKRLPNFLVVPSYPIVFACLSVGSVVTGDWSALLRAAIG 159
Query: 65 GLIVFIICFCFFAF--NIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFI 120
++F + F MG GDVKL + + L F ++ ++ + I
Sbjct: 160 AAVLFGVYFVLALIYPAGMGFGDVKLAGVIGAVLAYLSYGTLLVGAFLAFLVAALVGLII 219
Query: 121 LTVRMITNHIPIFGMFVP 138
L R I
Sbjct: 220 LVTRRGRIGTTIPFGPYM 237
>gi|328884739|emb|CCA57978.1| hypothetical protein SVEN_4692 [Streptomyces venezuelae ATCC 10712]
Length = 244
Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 38/138 (27%), Gaps = 7/138 (5%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
AV+L+ V D +P+ +++ + + L + L
Sbjct: 90 ELAVWLLAAPFAVLLGSVDARVYRLPDVLTLPLAVAVPLLLGGAELLPYEAGSWRGAVLG 149
Query: 68 VFIIC-----FCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFI 120
+ + + GDVKL GW + F +LG +
Sbjct: 150 GLALGGAYLVLHLISPGGLAMGDVKLALPLGAALGWYGWGVLYAGAFAGFLLGAVYGYGR 209
Query: 121 LTVRMITNHIPIFGMFVP 138
+ +R I
Sbjct: 210 IALRRADRSSAIPFGPFM 227
>gi|307701069|ref|ZP_07638094.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Mobiluncus mulieris FB024-16]
gi|307614064|gb|EFN93308.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Mobiluncus mulieris FB024-16]
Length = 227
Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIV--MLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ + D ++PNRV + + LL+A + L + V + I
Sbjct: 81 FLTPVALVLIVIDARWHLLPNRVVLPATGVLLPLLSAIAIDRGDWEALLRVWVWGLGMGI 140
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +G GDVKL A W G + + LF ++LGG+ ++ L R T
Sbjct: 141 LLFLVSCFGLGMGDVKLGIPLAAWLGLYSWVAPVIMLFLASLLGGLFALTRLLARKATLQ 200
Query: 130 IPIFGMFVP 138
+
Sbjct: 201 SHLAFGPWM 209
>gi|222151542|ref|YP_002560698.1| hypothetical protein MCCL_1295 [Macrococcus caseolyticus JCSC5402]
gi|222120667|dbj|BAH18002.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 245
Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 6/136 (4%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRV------SIVMLGSFLLTAFLLGMDYEL 57
+ ++ + L L+ ++ D+ + IPN++ +++ ++L +
Sbjct: 85 NSIIHINIALTITIFLIPLSIIDIETYTIPNQLLTLFFSCLMIGYTYLFIFHSETISEIK 144
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
++ LI+ ++ FF +G GD+KL ++ F I G
Sbjct: 145 FEHIMIKLLIILLLHIFFFVTKSIGYGDIKLFVILLIFLPIPYYIAMFFMTYLIGGFASM 204
Query: 118 VFILTVRMITNHIPIF 133
VF+ R + +
Sbjct: 205 VFLSYKRNLKKIPLVP 220
>gi|156977411|ref|YP_001448317.1| prepilin peptidase CpaA [Vibrio harveyi ATCC BAA-1116]
gi|156529005|gb|ABU74090.1| hypothetical protein VIBHAR_06198 [Vibrio harveyi ATCC BAA-1116]
Length = 112
Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 49 FLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
+ + L L+V + +AF +G GD+K ++ S +
Sbjct: 3 LFFQYFLSPLDIQLTTFLVVLVGGLILYAFIWVGAGDIKYAAVLSLTIPLQDLLWSLVMM 62
Query: 109 VAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ G + + +++ + V + K IPYGIAIS+G +
Sbjct: 63 AFVGGFLATAYLVNRK-----------LVTNTANTKEGIPYGIAISVGFYLVIL 105
>gi|172040636|ref|YP_001800350.1| hypothetical protein cur_0956 [Corynebacterium urealyticum DSM
7109]
gi|171851940|emb|CAQ04916.1| hypothetical protein cu0956 [Corynebacterium urealyticum DSM 7109]
Length = 153
Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 10/160 (6%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ AV + + A+ D IPN V + + ++ A L G
Sbjct: 1 MMGAVLAALGVAVAYLAVVDWRYRRIPNAVVLPSILCAIVAA-------GAWQPAALAGG 53
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTVR 124
+ + F FF K ++ + G + + + + G + +
Sbjct: 54 AGWWLLFSFFHHRA-AKHRRKGSSAAGRYLGGGDAKFAVVCGILASWHGSGWVLLAMAAA 112
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ + + I + + + G A+++G L+++ +
Sbjct: 113 GMLSTVAILYRGHSRKLPNQRAVAMGPAMALGTLLAFLVT 152
>gi|20808458|ref|NP_623629.1| hypothetical protein TTE2059 [Thermoanaerobacter tengcongensis MB4]
gi|20517076|gb|AAM25233.1| hypothetical protein TTE2059 [Thermoanaerobacter tengcongensis MB4]
Length = 143
Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 39/101 (38%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + L +AA +D I N V +L ++ L + ++ ++
Sbjct: 1 MHSITLSLPVVVLTAYAAWTDCKRKEIDNWVPAAILTYGIILNAFLNPVGFIESIVYMLT 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
+ +GGGDVKLLT+ A +FG L +
Sbjct: 61 AFAILFTIYIITNGQLGGGDVKLLTALAFFFGSDIMVLLLI 101
>gi|217977093|ref|YP_002361240.1| peptidase A24A prepilin type IV [Methylocella silvestris BL2]
gi|217502469|gb|ACK49878.1| peptidase A24A prepilin type IV [Methylocella silvestris BL2]
Length = 202
Score = 39.1 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 23/146 (15%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE------LIALHLLVGLIVFIICFCFFA-- 77
D S +IPN +S+ + L +A + + I ++GL F + ++
Sbjct: 63 DARSFLIPNELSLAVFALALASAAVGAPEGAVTGVAFAILRACVLGLAFFALREVYYRWR 122
Query: 78 -FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+G GDVKL + W W ++ ++ R
Sbjct: 123 GREGIGFGDVKLAAAGGAWLDWPMMPVAVEIAALTAIAAYALVQSAGRRR---------- 172
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYP 162
++P+G+ ++ + +
Sbjct: 173 ----IDPSGRLPFGLFLAPAIWLGWL 194
>gi|296328363|ref|ZP_06870890.1| integral membrane protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296154542|gb|EFG95332.1| integral membrane protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 165
Score = 39.1 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 10/144 (6%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFN 79
D+ IPN ++ +L + + +D I I+ +
Sbjct: 16 VMYIDINKKYIPNILNFSILVLSIFICGIDKVDIFFIGASCYTLPILIFYGYISDILKKE 75
Query: 80 IMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+ G GD+KL+ ++ G FL F ++ + +++I+ +I+
Sbjct: 76 VFGFGDIKLIIPLGGLLYLGEINIFLQIYIFYLLVFSLATLYIIIYIVISYCRNKPVKIK 135
Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
+ I + +I Y
Sbjct: 136 GVELA------FAPYICLAFIIIY 153
>gi|331003044|ref|ZP_08326556.1| hypothetical protein HMPREF0491_01418 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413088|gb|EGG92463.1| hypothetical protein HMPREF0491_01418 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 159
Score = 39.1 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 9/136 (6%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++ I L AA++D+ IPN + + + + L+
Sbjct: 1 MIYYIVGSMLFVAAVTDILCRKIPNIIIFIYFTIGMAVL---------SLDFFIRVLVSL 51
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ + G GD+K+ + G + + + G V+++ +
Sbjct: 52 FLFSILYNLRFFGAGDIKIFALVIGFLGTYEGVNLTVTALVLAGIGSLVYMIFTNQLIER 111
Query: 130 IPIFGMFVPKSFLMKN 145
I + +
Sbjct: 112 INKLTDYCMRVVSAGR 127
>gi|295837144|ref|ZP_06824077.1| type IV peptidase [Streptomyces sp. SPB74]
gi|295826371|gb|EDY46425.2| type IV peptidase [Streptomyces sp. SPB74]
Length = 263
Score = 39.1 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 24/160 (15%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALH 61
V+L+ V +DL +P+ +++ L + + L
Sbjct: 110 ELPVWLLLAPAGVLLLRTDLRVQRLPDPLTLTAAPLAAALLGLAALHPEHAGSWPRALLG 169
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVF 119
+V F + F + + +G GDVKL + W +F +L + +
Sbjct: 170 AVVLAGAFAVLF-LVSPSGLGFGDVKLALVLGLALAWYGWGVLFLGVFAGFVLAALYGLT 228
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
++ +R + IP+G A+ G +
Sbjct: 229 LIALRRA---------------TRRTAIPFGPALLAGAYL 253
>gi|87299139|emb|CAJ76207.1| competence transcription factor C [Bacillus sp. Bt 22]
Length = 99
Score = 39.1 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 33/83 (39%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ ++ L+ A++D+ +IPNR+ I L + +D L
Sbjct: 17 LELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAG 76
Query: 67 IVFIICFCFFAFNIMGGGDVKLL 89
+F+ +GGGD+KL
Sbjct: 77 FLFLAVIAAITHGGVGGGDIKLF 99
>gi|88808669|ref|ZP_01124179.1| putative type 4 prepilin peptidase [Synechococcus sp. WH 7805]
gi|88787657|gb|EAR18814.1| putative type 4 prepilin peptidase [Synechococcus sp. WH 7805]
Length = 273
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 23/142 (16%)
Query: 36 VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN-------IMGGGDVKL 88
+ V+ + L ++ HL+ ++ A +G GD KL
Sbjct: 139 ICGVLATALLAWGGGSDNPKAVLLNHLIASATGLLVMESLSALAERILGQPALGLGDAKL 198
Query: 89 LTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIP 148
W G +S V + +V T R + P
Sbjct: 199 AAVAGAWLGLGGLGISMALAVFSGAAVGTVGRWTGR----------------LGPRQPFP 242
Query: 149 YGIAISMGGLISYPDSYLFKVA 170
+G I+ G +++ +
Sbjct: 243 FGPFIAFGIWMTWLMGASWWWQ 264
>gi|78186664|ref|YP_374707.1| Type II secretory pathway prepilin signal peptidase [Chlorobium
luteolum DSM 273]
gi|78166566|gb|ABB23664.1| Type II secretory pathway prepilin signal peptidase [Chlorobium
luteolum DSM 273]
Length = 240
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 22/140 (15%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAF------LLGMDYELIALHLLVGLIVFIICFCFFAFN 79
D + ++P+R+ + + S L ++ L A+ + + + +
Sbjct: 108 DWDTTLLPDRIVLPLGLSGLAASWAGLTSQNLPESAASAAVVAGIFGGLAWLYRRRRGED 167
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+GGGD+KLL + W+G ++ +V+ R +
Sbjct: 168 GIGGGDIKLLAALGAWWGLLDVLYMVVWASVGTVVWYAVWRWLKRPDPDAEW-------- 219
Query: 140 SFLMKNKIPYGIAISMGGLI 159
P+G AI+ L+
Sbjct: 220 --------PFGPAIAAAALV 231
>gi|257464377|ref|ZP_05628754.1| integral membrane protein [Fusobacterium sp. D12]
gi|317061881|ref|ZP_07926366.1| integral membrane protein [Fusobacterium sp. D12]
gi|313687557|gb|EFS24392.1| integral membrane protein [Fusobacterium sp. D12]
Length = 147
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 7/135 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + ++F ++ D+ + I N ++++L +L + LLG I + + +
Sbjct: 1 MEKLLICCLVILMLFLSIEDIQTKEISNFGNLLLLFCSILYSKLLGNSIGNILISMSTYI 60
Query: 67 IVFIICFC----FFAFNIMGGGDVKLLTSTAVWF---GWTPSFLSFLFFVAILGGILSVF 119
I + F I+G GD+K + + S F +L ++ +
Sbjct: 61 CPLIFLYGYLSDFLKKEILGFGDIKFVMAIGTLMTSYNLWLSMYYFYMISFLLASMVGIC 120
Query: 120 ILTVRMITNHIPIFG 134
+L + +
Sbjct: 121 LLYRKREKELAMLPY 135
>gi|86605996|ref|YP_474759.1| prepilin peptidase [Synechococcus sp. JA-3-3Ab]
gi|86554538|gb|ABC99496.1| prepilin peptidase [Synechococcus sp. JA-3-3Ab]
Length = 280
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 16/107 (14%)
Query: 46 LTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ L L + + + + MGGGD KLL +W GW ++
Sbjct: 163 AMGWSLVAGIAGAVLGIWLLEGIGFVARWVLRREAMGGGDGKLLALIGMWLGWQGVLVAL 222
Query: 106 LFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
+ + + + R + IP+G
Sbjct: 223 ILGSGLGLLGSLLAMAGGR----------------ARLGKPIPFGPY 253
>gi|226357151|ref|YP_002786891.1| Prepilin peptidase [Deinococcus deserti VCD115]
gi|226319141|gb|ACO47137.1| putative Prepilin peptidase (Type 4 prepilin-like proteins leader
peptide-processing enzyme) (Peptidase A24A-like protein)
[Deinococcus deserti VCD115]
Length = 381
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 19/87 (21%)
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+ MG GDVKL + GW ++ + G +L + + ++
Sbjct: 301 ASAMGFGDVKLAAVIGAFLGWERLLVALVV-AVFAGALLGIVQMAMKRENRVK------- 352
Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDS 164
+G +++G L++
Sbjct: 353 -----------FGPYLALGALVALVWG 368
Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 17/120 (14%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVGL 66
+ ++ L+ ++ DL + IP+ +++ + LL A A + L
Sbjct: 105 TLGLMVLFTLLLVSSAIDLDTYTIPDELTLPGVALGLLFALGNAPDSGLPTFAQAVQGAL 164
Query: 67 IVFIICFCFFAFNI---------------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ + +G + L W G L I
Sbjct: 165 LGAGLLVTINNLGAWVLRRFRERQFPEFPLGYQQISLGLLAGAWLGPWWGAGVGLVSALI 224
>gi|261867457|ref|YP_003255379.1| TadV [Aggregatibacter actinomycetemcomitans D11S-1]
gi|8096200|dbj|BAA25888.2| unnamed protein product [Actinobacillus actinomycetemcomitans]
gi|109727129|gb|ABG45872.1| TadV [Aggregatibacter actinomycetemcomitans]
gi|261412789|gb|ACX82160.1| TadV [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 142
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 20/135 (14%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+D+ S +I NRV + +L + + + + ++ L II F F+ +G G
Sbjct: 22 TDIRSRLISNRVVLFLLLVIIPFSL-----LKYQTIFVIPALCTLIIGFLLFSLRFIGAG 76
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
D+KL + + F F F G++ + L R + +
Sbjct: 77 DIKLASVLMLAVPSDEVFSFFFFTTFAGLGLIIIGWLFFRKS---------------IKE 121
Query: 145 NKIPYGIAISMGGLI 159
N +PYG+AIS+G +I
Sbjct: 122 NGLPYGVAISLGFMI 136
>gi|26000710|gb|AAN75206.1| TadV [Aggregatibacter actinomycetemcomitans]
Length = 142
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D+ S +I NRV + +L + + + + ++ L II F F+ + +G GD
Sbjct: 23 DIRSRLISNRVVLFLLFVIVPFSL-----LKYQTIFVIPALCTLIIGFLLFSLHFIGAGD 77
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
VKL++ + F F F G++ + L R + +N
Sbjct: 78 VKLVSVLMLAVPSDEIFSFFFFTTFAGLGLIIIGWLFFRKS---------------IKEN 122
Query: 146 KIPYGIAISMGGLI 159
+PYG+AIS+G +I
Sbjct: 123 GLPYGVAISLGFMI 136
>gi|227871911|ref|ZP_03990305.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227842252|gb|EEJ52488.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 228
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 7/143 (4%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF----LLGMDYEL 57
+ F L AA+ D +IPN + ++ L + ++ + +
Sbjct: 73 NAVDTFAIFRLTLLYFILAVAAIVDGEKYIIPNILVLIFLVAGVVIGLIEILYYHLGWRE 132
Query: 58 IALHLLVGLIVFIICFCFFA---FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
L L + ++ +G GDVKL + A + G + + + LF +
Sbjct: 133 FLFQSLGSLFILLLFLLLMVFLSKGGLGMGDVKLYAAIAFYSGISAACIILLFSFILCAI 192
Query: 115 ILSVFILTVRMITNHIPIFGMFV 137
F+L ++ G F+
Sbjct: 193 TFIPFLLLKKIKIKDAFPMGGFI 215
>gi|34762867|ref|ZP_00143851.1| Integral membrane protein [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27887475|gb|EAA24561.1| Integral membrane protein [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 166
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 6/141 (4%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFNI 80
D+ IPN ++ +L + + +D I I+ + +
Sbjct: 17 MYIDINKKYIPNILNFSILVLSIFICGIDKIDIFFIGASCYTLPILIFYGYMSDILKKEV 76
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
G GD+KL+ + + FL + S+ L + + V
Sbjct: 77 FGFGDIKLIIALGGLL-YQGEINIFLQIYIFYLLVFSLATLYIIIYIVISYCRNKSVK-- 133
Query: 141 FLMKNKIPYGIAISMGGLISY 161
+ ++ + I + +I Y
Sbjct: 134 -IKGVELAFAPYICLAFIIIY 153
>gi|167760290|ref|ZP_02432417.1| hypothetical protein CLOSCI_02663 [Clostridium scindens ATCC 35704]
gi|167662173|gb|EDS06303.1| hypothetical protein CLOSCI_02663 [Clostridium scindens ATCC 35704]
Length = 143
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 17/148 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+I L+ ++ D+ IP + ++ + L + +A I+F++
Sbjct: 7 MICMGILLSLSVIDIHFRRIPADILVMASIAALAYQGITRQPDLWMAAGGAGVGILFLLV 66
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
G GD + + ++ G + L V + +
Sbjct: 67 SKVTR-EGFGYGDSWAILALGIYLGLWGVLDVLVGTFCFLAVAALVCLTAKK-------- 117
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
K+ IP+ ++ G L+S
Sbjct: 118 --------MSRKHTIPFIPFLAAGYLLS 137
>gi|256846647|ref|ZP_05552103.1| integral membrane protein [Fusobacterium sp. 3_1_36A2]
gi|294784356|ref|ZP_06749647.1| integral membrane protein [Fusobacterium sp. 3_1_27]
gi|256717867|gb|EEU31424.1| integral membrane protein [Fusobacterium sp. 3_1_36A2]
gi|294487928|gb|EFG35283.1| integral membrane protein [Fusobacterium sp. 3_1_27]
Length = 166
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 6/141 (4%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFNI 80
D+ IPN ++ +L + + +D I I+ + +
Sbjct: 17 MYIDINKKYIPNILNFSILVLSIFICGIDKIDIFFIGASCYTLPILIFYGYMSDILKKEV 76
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
G GD+KL+ + + FL + S+ L + + +
Sbjct: 77 FGFGDIKLIIALGGLL-YQGEINIFLQIYIFYLLVFSLATLYIIIYIVISYCRNKSMK-- 133
Query: 141 FLMKNKIPYGIAISMGGLISY 161
+ ++ + I + +I Y
Sbjct: 134 -IKGVELAFAPYICLAFIIIY 153
>gi|153930692|ref|YP_001393308.1| type IV prepilin peptidase PilD [Yersinia pseudotuberculosis IP
31758]
gi|152958233|gb|ABS45695.1| type IV prepilin peptidase PilD [Yersinia pseudotuberculosis IP
31758]
Length = 235
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 6/122 (4%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL------GMDYE 56
E + + + ++D ++P +IV++ S L+
Sbjct: 78 ELNTITQFAYWVFISLSTILLITDGRHLVLPENFTIVLILSGLIFTLSGRSKLTLTESIN 137
Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
++ I+ I G GD LL +W G F + + I
Sbjct: 138 GALYPVVFIFIIGSIVSVIKQTPSYGMGDNFLLFGIGLWIGIDKVFQFAVISSVLALCIA 197
Query: 117 SV 118
+
Sbjct: 198 CI 199
>gi|311109921|ref|YP_003982772.1| type IV leader peptidase family protein 2 [Achromobacter
xylosoxidans A8]
gi|310764610|gb|ADP20057.1| type IV leader peptidase family protein 2 [Achromobacter
xylosoxidans A8]
Length = 233
Score = 38.7 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 36/111 (32%), Gaps = 8/111 (7%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ L A D S ++P+ ++ ++ L+ + + + ++G++
Sbjct: 80 TVALAFFLTMLAAGAFVDANSQVLPDEITGSLVWGGLIAQWAGIVPWGGSIETAVIGVVA 139
Query: 69 FIICFCFFAFN--------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+G GD+K++ + W G L +
Sbjct: 140 GYGAIWLVTAGYCVCRRMAAIGHGDLKMIAGLSAWLGVGELPAVILGSCVL 190
>gi|301165537|emb|CBW25108.1| putative membrane protein [Bacteriovorax marinus SJ]
Length = 168
Score = 38.7 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 1/137 (0%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V+L L F A D+ I N ++ + +LL+ F Y + + FI
Sbjct: 5 VYLFLVVQLFFVASHDVTHKKISNFWPLINISFYLLSVFFFPDHYNFGWSTFVFPIAFFI 64
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ F IMG GD K L S + + +F+F ++ + +L +I
Sbjct: 65 VGIFLFTLKIMGAGDSKYLLSFYLLIPVSLHETAFIFLAYST-VVVGLSLLLTNIIKRSD 123
Query: 131 PIFGMFVPKSFLMKNKI 147
I K+ + I
Sbjct: 124 IIKLAIKTKNLRLIKTI 140
>gi|33596965|ref|NP_884608.1| hypothetical protein BPP2372 [Bordetella parapertussis 12822]
gi|33566416|emb|CAE37669.1| putative membrane protein [Bordetella parapertussis]
Length = 176
Score = 38.7 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL---- 57
E+ + + + + DL +PNR+ I + +
Sbjct: 1 MENLLREHVWWAVYVAFNLLVVFYDLRVRRVPNRLLIAAALAQCAWLAWHAWGVQATPAA 60
Query: 58 ---IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
+G ++ + + +MG GDVK L + G
Sbjct: 61 GARGWSDAGLGFVLGMAFVLVWRMRLMGAGDVKYLAVLGLAIG 103
>gi|24114271|ref|NP_708781.1| hypothetical protein SF3007 [Shigella flexneri 2a str. 301]
gi|24053425|gb|AAN44488.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|281602357|gb|ADA75341.1| putative tight adherance operon protein [Shigella flexneri 2002017]
Length = 155
Score = 38.7 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
L L+F + D+ +I +R +V+ L L L+ V ++
Sbjct: 19 LLFVALFLIFISWGDILLRIISHRYLLVLTVLIFLALILQHQKPN-----LVAAGSVLLV 73
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F F+ I+GGGDVKLLT ++ + ++ +L R
Sbjct: 74 GFFLFSAGIIGGGDVKLLTVLSLAIDEHELANFLVAMTFCGALVVLAGLLFFRK------ 127
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +N +PY + IS+ L++YP LF
Sbjct: 128 ---------SIRENGVPYAVPISLAFLLTYPVFPLF 154
>gi|323934467|gb|EGB30875.1| type IV leader peptidase [Escherichia coli E1520]
Length = 97
Score = 38.7 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
+ + ++ ++ D + ++P+++++ +L L+ G+ D + G
Sbjct: 2 TGALFLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYG 61
Query: 68 VFIICFC 74
V +
Sbjct: 62 VLWCVYW 68
>gi|145596971|ref|YP_001161268.1| peptidase A24A, prepilin type IV [Salinispora tropica CNB-440]
gi|145306308|gb|ABP56890.1| peptidase A24A, prepilin type IV [Salinispora tropica CNB-440]
Length = 249
Score = 38.7 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 40/152 (26%), Gaps = 19/152 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM-----LGSFLLTAFLLGM-DYELIAL 60
+ A V A D +P+R++ L L G +
Sbjct: 98 IELAAAAWWLGWAVPLAFVDAAVHRLPDRLTGPAALGTWLLLGLAATLDTGYAPWLRATA 157
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L ++F G GD KL + GW L G +L+
Sbjct: 158 AGLGLGLLFATSTLLLGRRGFGLGDAKLAVGVGLLLGWHGWPFLVL------GLLLAFTF 211
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
V + + + +P+G
Sbjct: 212 AAVTALALLATGRARW-------SSHLPFGPF 236
>gi|237738595|ref|ZP_04569076.1| integral membrane protein [Fusobacterium sp. 2_1_31]
gi|229424078|gb|EEO39125.1| integral membrane protein [Fusobacterium sp. 2_1_31]
Length = 160
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 6/154 (3%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + L+F D+ IPN ++ +L + + ++ I V I+
Sbjct: 4 ILIIFLYIALIFVMYIDINKKYIPNVLNFSILILSVFIRGISEIENFFIGAACYVLPILI 63
Query: 70 IICFC--FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + G GD+KL+ + + + ++ L VF + IT
Sbjct: 64 FYGYISDILKREVFGFGDIKLIIALGGLLYHSEINIFLQIYIF----YLLVFSIATLYIT 119
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
++ I+ + +I + I + I Y
Sbjct: 120 FYLCIYFCKNRALKIRGVEIAFAPYICIAFFIIY 153
>gi|87299141|emb|CAJ76208.1| competence transcription factor C [Bacillus sp. Bt 23]
gi|87299145|emb|CAJ76210.1| competence transcription factor C [Bacillus sp. Am 12]
Length = 99
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L L+ +SD+ +IP+ V L F + FL+ ++ +L +
Sbjct: 18 ELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGG 77
Query: 68 VFIICFCFFAFNIMGGGDVKLL 89
+ + +G GDVKL
Sbjct: 78 MLPLLTLLLTKGGIGWGDVKLF 99
>gi|307332447|ref|ZP_07611511.1| peptidase A24A prepilin type IV [Streptomyces violaceusniger Tu
4113]
gi|306881916|gb|EFN13038.1| peptidase A24A prepilin type IV [Streptomyces violaceusniger Tu
4113]
Length = 248
Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 9/124 (7%)
Query: 23 ALSDLFSAMIPNRVSIVMLGS------FLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
DL +P+ +++ M G + L V +++ F
Sbjct: 110 TAVDLAVNRLPDVLTLPMAGGVAMLLGAAALLPHSAGSWPRALLGGAVLGGAYLVLFLI- 168
Query: 77 AFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+ + MG GDVKL + V GW F +LG + ++ R +
Sbjct: 169 SPSGMGFGDVKLALTLGVALGWYGWDVLFVGAFAGLLLGSCCAAALVLTRRAGRRTAMAF 228
Query: 135 MFVP 138
Sbjct: 229 GPFM 232
>gi|251791993|ref|YP_003006713.1| TadV [Aggregatibacter aphrophilus NJ8700]
gi|247533380|gb|ACS96626.1| TadV [Aggregatibacter aphrophilus NJ8700]
Length = 142
Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 20/134 (14%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
+D+ S I NR+ +++L + + + L +L L I F F N++G G
Sbjct: 22 TDVRSRTIGNRIILLLLITIIPLSLLKYQTLF-----ILPSLCALAIGFLLFTLNLVGAG 76
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
DVKL+ + F F F G++ + L R +
Sbjct: 77 DVKLIAVLMLMIPNDEIFPFFFFTTFAGLGLIIISWLFFRKSV---------------KE 121
Query: 145 NKIPYGIAISMGGL 158
N +PYG+AIS+G +
Sbjct: 122 NGLPYGVAISLGFM 135
>gi|326792827|ref|YP_004310648.1| peptidase A24A prepilin type IV [Clostridium lentocellum DSM 5427]
gi|326543591|gb|ADZ85450.1| peptidase A24A prepilin type IV [Clostridium lentocellum DSM 5427]
Length = 138
Score = 38.3 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++I L++ + +D IPN+ ++L + L +
Sbjct: 2 IKYIILLIFLLYFSYTDYCYRRIPNKAIFLLLIIGFCFLPFSH-PISHYCIGLFFPSFIL 60
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ +G GD+KLL T ++ G+ + L F+ + +V+ +
Sbjct: 61 FFLNVLYSK-FIGLGDIKLLICTGLFLGFKINTLLFVLTCTLGLIFCAVYTFFSKKRLYS 119
Query: 130 IPIFG 134
+P+
Sbjct: 120 LPLAP 124
>gi|326204890|ref|ZP_08194743.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
2782]
gi|325984939|gb|EGD45782.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
2782]
Length = 153
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 22/162 (13%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
+ ++F ++ L+ A++ D+ +IP+ V I + + L+ L
Sbjct: 8 QGSLLFMLQSVLFVALLLIASVFDVKKRIIPDTVCIGVALTGLMIFEPS---------RL 58
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
L +GGGD+KL + + G + + + + + + +T
Sbjct: 59 LGCFSAIPFFIAALMNGKIGGGDIKLTAAAGIVLGIGGGIAAMIIGLTAMLLFYAAYAIT 118
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
R+ K P +S+G + +Y S
Sbjct: 119 QRLRKR-------------ERKRAFPLAPFLSIGCITAYLIS 147
>gi|227484640|ref|ZP_03914956.1| possible Prepilin peptidase [Anaerococcus lactolyticus ATCC 51172]
gi|227237360|gb|EEI87375.1| possible Prepilin peptidase [Anaerococcus lactolyticus ATCC 51172]
Length = 244
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 1/134 (0%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
K ++ + +++D I + V++G + FL+ L
Sbjct: 97 KTYGLIEGTYLSAVLLLCLLISVTDYKFLEIYDTDLKVLIGLGFIYRFLVYGIDLKFILS 156
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L+ +I F + +G GD+ + G + L LF I +
Sbjct: 157 CLIFVIGFKLLMVISK-GGLGDGDLFFYLGLIFFLGNSQIPLLVLFSTWIGAAFAIAKAI 215
Query: 122 TVRMITNHIPIFGM 135
+R + I +
Sbjct: 216 RLRSLKGSIALCPA 229
>gi|289627372|ref|ZP_06460326.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|330867162|gb|EGH01871.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330871050|gb|EGH05759.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 156
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 4/151 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ V A D I N +++ G + + +
Sbjct: 3 LFLLLVWFVICAEQDARRKHISNGLTLGATTLAAAWLAGTGTTWLGAPPLEAALALALAL 62
Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+A +G GDVKL+ + A+ +F+ + + I
Sbjct: 63 GLTLPGYALGKLGAGDVKLMAALALASDSVYLLCTFIGAGIAALTWVLLARKVQHHINQR 122
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++ +K P+ + G L++
Sbjct: 123 VARRYAYMFP--DAPDKYPFSPFLLAGLLLT 151
>gi|288918212|ref|ZP_06412567.1| peptidase A24A prepilin type IV [Frankia sp. EUN1f]
gi|288350382|gb|EFC84604.1| peptidase A24A prepilin type IV [Frankia sp. EUN1f]
Length = 220
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 26 DLFSAMIPNRVSIV--MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF---NI 80
DL +P+R+ + + + LL +G L L+ + + +
Sbjct: 84 DLRVHRLPDRIVLPSYAVLAALLVVPTVGEGTPDRLLRALLAGFAAWLAYGVLYLLPGSG 143
Query: 81 MGGGDVK--LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+G GDVK L A+ + P+ +L + GI ++ +L +R +
Sbjct: 144 LGRGDVKTAGLLGLALGWLGWPAVALWLVAATMTAGITALTLLILRRV------------ 191
Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYL 166
++ I YG + +G L++ +
Sbjct: 192 ---SRRDPIAYGPFLLIGALVAVLGTGW 216
>gi|257470104|ref|ZP_05634196.1| integral membrane protein [Fusobacterium ulcerans ATCC 49185]
gi|317064327|ref|ZP_07928812.1| integral membrane protein [Fusobacterium ulcerans ATCC 49185]
gi|313690003|gb|EFS26838.1| integral membrane protein [Fusobacterium ulcerans ATCC 49185]
Length = 150
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 6/141 (4%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + F D+ IPN ++I+ + + + E + V
Sbjct: 1 MENLFIIFLLAVSFFILAIDIKKLYIPNTLNIIFFVGAVCYRGIDIYEIENGIIGAGVYT 60
Query: 67 IVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFI 120
+ + + IMG GD+KL+ G+ + + ++ I +
Sbjct: 61 LPLLFFYGYGSDIAGKEIMGFGDIKLMMGVGYILGYSNFYTVYIYYLGAFVIAAIFGIGY 120
Query: 121 LTVRMITNHIPIFGMFVPKSF 141
+ + F F+ SF
Sbjct: 121 IIKKKAVKGEIPFSPFLLISF 141
>gi|152990850|ref|YP_001356572.1| type 4 prepilin peptidase [Nitratiruptor sp. SB155-2]
gi|151422711|dbj|BAF70215.1| type 4 prepilin peptidase [Nitratiruptor sp. SB155-2]
Length = 270
Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 22/190 (11%), Positives = 58/190 (30%), Gaps = 45/190 (23%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+K + + + I L+ +L D +P+ +++ L + + + + +
Sbjct: 91 LKSGFHLNTLIIAIVFDLLLALSLIDWRFKAVPDSINLSAATLSLFSTPDIMNNIQNALI 150
Query: 61 -HLLVGLIVFIICFCFFA-------------------------FNIMGGGDVKLLTSTAV 94
++ ++ F + + MG GD+ + +
Sbjct: 151 VAGMLAMLRFFVGYYVSKKEDLRIRKKLKETPWLSSYYPKFPMIEAMGEGDIIVGFTLGA 210
Query: 95 WFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
G SF++F I + + ++P+ ++
Sbjct: 211 ILGVQLSFVAFFLAALIA-------------------LPFSLAFRYKKSDKELPFIPFLA 251
Query: 155 MGGLISYPDS 164
+GG I+Y
Sbjct: 252 LGGFIAYLFG 261
>gi|229846385|ref|ZP_04466493.1| type 4 prepilin-like protein specific leader peptidase [Haemophilus
influenzae 7P49H1]
gi|229810478|gb|EEP46196.1| type 4 prepilin-like protein specific leader peptidase [Haemophilus
influenzae 7P49H1]
Length = 230
Score = 38.3 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ + L + D + +I + +L L A L + A
Sbjct: 84 IFAIWLGLTLLILWAISYLDWYYQLISTTPCLWLLTIGLFGADNNFSLLTLSESIKSAAS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+V ++ I ++ G GD L + + + FL ++LG S+
Sbjct: 144 FFIVFYAIYWIAKFYYGKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI 201
>gi|218887829|ref|YP_002437150.1| peptidase A24A prepilin type IV [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758783|gb|ACL09682.1| peptidase A24A prepilin type IV [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 196
Score = 38.3 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 7/145 (4%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-------MDYELIALHLLVGLI 67
L+ A +DL + IPN ++ + + + LG ++ + L +
Sbjct: 9 LAVVLLVAVTTDLRAMRIPNWLTFPAMLAGVAANAALGAWTGGLSGAWDGLLFSLSGFGL 68
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ F +MG GDVKLL + + G F +F++ G +
Sbjct: 69 GLGLMLIPFLLRVMGAGDVKLLAAAGAFLGAETVFRAFIWTSLAGGVYALGVLAFHLPQL 128
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIA 152
+ + + + Y A
Sbjct: 129 RAVLRSLRVSVELLAVTGRFDYVPA 153
>gi|210623286|ref|ZP_03293703.1| hypothetical protein CLOHIR_01653 [Clostridium hiranonis DSM 13275]
gi|210153687|gb|EEA84693.1| hypothetical protein CLOHIR_01653 [Clostridium hiranonis DSM 13275]
Length = 220
Score = 38.3 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 37/123 (30%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ I + +L D ++ + + + + + L L+ L L I
Sbjct: 72 YFIFFVLAIIISLIDYYTMYVYDILVFSGIIIQSVVKILNENVEILVDSVLAGLLCALIS 131
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
A N+MG GDV + A+ G+ S + L + +
Sbjct: 132 YLIVKATNMMGTGDVGVYALCAMTIGFKSSLSLIPGSFLVSAIFLIIRFICGNRDKKIAF 191
Query: 132 IFG 134
Sbjct: 192 APY 194
>gi|52424415|ref|YP_087552.1| PppA protein [Mannheimia succiniciproducens MBEL55E]
gi|52306467|gb|AAU36967.1| PppA protein [Mannheimia succiniciproducens MBEL55E]
Length = 238
Score = 38.3 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 15/164 (9%), Positives = 47/164 (28%), Gaps = 22/164 (13%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS--FLLTAFLLGMDYELIALHL 62
+ + ++ L D +I + ++L L+ E +
Sbjct: 86 DLTLTCFYMSYLVLLFIIGKLDWHYQLIEPALCQLLLLILSGASYFRLISNSLEDVVESA 145
Query: 63 LVGLIVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
++ ++F + + + + G GD L+++ + W L + +
Sbjct: 146 VISFVIFYLVYHISKLCYKKEVFGQGDYWLISALSAGLSWRDIPLMISLACLLALFYALI 205
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + + +P+ + L++
Sbjct: 206 Y----------------NRLLAHTKISLVPFAPFLCTANLVTLF 233
>gi|126733581|ref|ZP_01749328.1| hypothetical protein RCCS2_05479 [Roseobacter sp. CCS2]
gi|126716447|gb|EBA13311.1| hypothetical protein RCCS2_05479 [Roseobacter sp. CCS2]
Length = 163
Score = 38.3 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 1/138 (0%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+F + +D+ I N+ IV++ + + + + L I +
Sbjct: 11 FLPAIIPITLFISWNDMRDMKITNKSVIVVMVVYGVLGPFA-FGWGMYFWQWLHFPIALV 69
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+C +A MGGGD KL+ + A +F F A L L V L
Sbjct: 70 VCMALWALRFMGGGDAKLIAAMAPFFVMADIEFILRIFAASLIAALIVHTLFRLTPLKRP 129
Query: 131 PIFGMFVPKSFLMKNKIP 148
+ P
Sbjct: 130 VSEWKSWNAGWYFPKGFP 147
>gi|307133494|dbj|BAJ19006.1| TadV [Aggregatibacter actinomycetemcomitans]
gi|307548785|dbj|BAJ19107.1| TadV [Aggregatibacter actinomycetemcomitans]
gi|307548800|dbj|BAJ19121.1| TadV [Aggregatibacter actinomycetemcomitans]
Length = 142
Score = 38.3 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D+ S +I NRV + +L + + + + ++ L II F F+ + +G GD
Sbjct: 23 DIRSRLISNRVVLFLLFVIVPFSL-----LKYQTIFVIPALCTLIIGFLLFSLHFIGAGD 77
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
VKL++ + F F F G++ + L R + +N
Sbjct: 78 VKLVSVLMLAVPSDEIFSFFFFTTFAGLGLIIIGWLFFRKS---------------IKEN 122
Query: 146 KIPYGIAISMGGLI 159
+PYG+AIS+G +I
Sbjct: 123 GLPYGVAISLGFMI 136
>gi|284163393|ref|YP_003401672.1| peptidase A24A prepilin type IV [Haloterrigena turkmenica DSM 5511]
gi|284013048|gb|ADB58999.1| peptidase A24A prepilin type IV [Haloterrigena turkmenica DSM 5511]
Length = 349
Score = 38.3 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL----------IALHL 62
L+ + A+ D+ + + + V I + + G +
Sbjct: 15 LVAVPVFAWVAVRDIKTRRVSSAVWIPLSLLGAVLLVWDGWLAWTTGGTAWTYDFLLPTA 74
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
+ V I + F+ +GG D K L A++F
Sbjct: 75 VSLGFVVPIAYLFWWVGGIGGADAKALLVLALFFP 109
>gi|296122518|ref|YP_003630296.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
gi|296014858|gb|ADG68097.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
Length = 348
Score = 38.3 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 58/200 (29%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-------- 61
+ + +V + DL + IP+ +++ + + A + + +
Sbjct: 115 VIAIGFVTLIVISMRVDLATMTIPDLITVPGVIAGFAFALVFPLVELVPVWGVSSLDSTS 174
Query: 62 ----------------------LLVGLIVFIICFCFFAFNI--------MGGGDVKLLTS 91
G++ +G GDV L+ +
Sbjct: 175 ASFAALTSQSSFFGEQGRAILRWFAGVVCGAGVIWLIRLGAGWSLRTEALGFGDVTLMAA 234
Query: 92 TAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGI 151
+ GW + LS + I G V + + IP+G
Sbjct: 235 VGGFLGWQATLLSLMLSPVIGIGHAGVARCFGKTVL-------------------IPFGP 275
Query: 152 AISMGGL-ISYPDSYLFKVA 170
++ M I++ S+++ A
Sbjct: 276 SLGMAAFVIAWNWSWVWPWA 295
>gi|326773953|ref|ZP_08233235.1| type IV pili prepilin peptidase PilD/XcpA [Actinomyces viscosus
C505]
gi|326636092|gb|EGE36996.1| type IV pili prepilin peptidase PilD/XcpA [Actinomyces viscosus
C505]
Length = 251
Score = 38.3 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 26/165 (15%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRV-------SIVMLGSFLLTAFLLGMDYELIALHL 62
V L L A D +PN + + L G + +
Sbjct: 95 IVALPLVALLGTACSVDAVCHRLPNHFLAQAAMWTGTATLALGLFNATTGTPLPEASWAI 154
Query: 63 ------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
V V + + MG GD KL +W G+ GG
Sbjct: 155 LRSILCAVSAGVIVGAMVLLPGSGMGLGDAKLCAVLGLWLGY-------------FGGTY 201
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + + + + K I +G +S+G +++
Sbjct: 202 AAMGIILGFFIGGFIAVALMACRLADRKTLIAFGPYLSLGAWLAW 246
>gi|302521160|ref|ZP_07273502.1| type IV peptidase [Streptomyces sp. SPB78]
gi|302430055|gb|EFL01871.1| type IV peptidase [Streptomyces sp. SPB78]
Length = 201
Score = 38.3 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 24/160 (15%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALH 61
V+L+ V +DL +P+ +++ L + + L
Sbjct: 48 ELFVWLLLAPPGVLLFHTDLRVQRLPDPLTLTTAPLAAALLGLAALHPEHAGSWPRALLG 107
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVF 119
+ F + F + + +G GDVKL + W + +F +L + +
Sbjct: 108 AVALAGGFAVLF-LVSPSGLGFGDVKLALLLGLALTWYGWGALFLGVFAGFLLAALYGLV 166
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
++ +R + IP+G A+ G +
Sbjct: 167 LIALRRA---------------TRRTAIPFGPALLAGAYL 191
>gi|320330501|gb|EFW86480.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 156
Score = 38.3 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 43/151 (28%), Gaps = 4/151 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ V A D I N +++ G + + +
Sbjct: 3 LFLLLVWFVICAEQDARRKHISNGLTLGATTLAAAWLAGTGTTWLGAPPLEAALALALAL 62
Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+A +G GDVKL+ + A +F+ + + I
Sbjct: 63 GLTLPSYALGKLGAGDVKLMAALAFASDSVYLLCTFIGAGIAALTWVLLARKVQHHINQR 122
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++ +K P+ + G L++
Sbjct: 123 VAQRYAYMFP--DAPDKYPFSPFLLAGLLLT 151
>gi|313648076|gb|EFS12522.1| type IV leader peptidase family protein [Shigella flexneri 2a str.
2457T]
Length = 147
Score = 38.3 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
L L+F + D+ +I +R +V+ L L L+ V ++
Sbjct: 11 LLFVALFLIFISWGDILLRIISHRYLLVLTVLIFLALILQHQKPN-----LVAAGSVLLV 65
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
F F+ I+GGGDVKLLT ++ + ++ +L R
Sbjct: 66 GFFLFSAGIIGGGDVKLLTVLSLAIDEHELANFLVAMTFCGALVVLAGLLFFRK------ 119
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ +N +PY + IS+ L++YP LF
Sbjct: 120 ---------SIRENGVPYAVPISLAFLLTYPVFPLF 146
>gi|254302341|ref|ZP_04969699.1| possible membrane protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322533|gb|EDK87783.1| possible membrane protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 166
Score = 38.3 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 52/144 (36%), Gaps = 10/144 (6%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFN 79
D+ IPN ++ +L + + ++ I I+ +
Sbjct: 16 VMYIDINKKYIPNILNFSILVLSIFICGIDKINSFFIGASCYTLPILVFYGYISDILKKE 75
Query: 80 IMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
+ G GD+KL+ S ++ G FL F ++ + +++I+ +++
Sbjct: 76 VFGFGDIKLIISLGGLLYLGEINIFLQIYVFYLLVFSLATLYIIIYIVVSYCRNKPVK-- 133
Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
+ ++ + I + +I Y
Sbjct: 134 ----IRGVELAFAPYICLAFIIIY 153
>gi|297622317|ref|YP_003703751.1| peptidase A24A prepilin type IV [Truepera radiovictrix DSM 17093]
gi|297163497|gb|ADI13208.1| peptidase A24A prepilin type IV [Truepera radiovictrix DSM 17093]
Length = 221
Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 19/95 (20%)
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MG GDVKL G + L + G +
Sbjct: 143 AMGFGDVKLAAVLGALLGPQNLLVGLLLAFVL-------------------GAVGGAAGR 183
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+F +P+G + +G L + +GL
Sbjct: 184 AFGGARVVPFGPYLVLGTLAALLFGDALAAWYLGL 218
>gi|255322346|ref|ZP_05363492.1| type IV pilus prepilin peptidase PilD [Campylobacter showae RM3277]
gi|255300719|gb|EET79990.1| type IV pilus prepilin peptidase PilD [Campylobacter showae RM3277]
Length = 273
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 20/184 (10%), Positives = 50/184 (27%), Gaps = 33/184 (17%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE------ 56
+ + +A+ + L+ +L D +P+ + + LL F ++
Sbjct: 109 YAAIFKAAMLGVCFILLLALSLIDFRYKAVPDPLLFASVAFSLLYGFNPPDSFDSDGLLF 168
Query: 57 --LIALHLLVGLIVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
++ + + F + MG D+ + G ++
Sbjct: 169 AFDSFINAAIFMFAFWLLRAVVSLTLKREAMGSADIFIAGVMGAILGVKLGLMAIYVSAL 228
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ + ++P+ +S+ LI Y F
Sbjct: 229 LTLPAYVIV---------------------RKRGYELPFVPFLSLATLIVYAFKEQFIYI 267
Query: 171 LMGL 174
L +
Sbjct: 268 LGLI 271
>gi|83589207|ref|YP_429216.1| peptidase A24A, prepilin type IV [Moorella thermoacetica ATCC
39073]
gi|83572121|gb|ABC18673.1| Peptidase A24A, prepilin type IV [Moorella thermoacetica ATCC
39073]
Length = 187
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 6/126 (4%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ A +DL + +I N ++I + L+ A L G + L + I
Sbjct: 8 VMLAAAAIAVYTDLKTGLIKNWLTIPFFLAGLVKATLSGPGILPDLMAGLAAIPATFIFL 67
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
G GD+KL VW G + F+ + L V
Sbjct: 68 SP------GEGDIKLAAGMGVWLGPELLPVYFIGAGLARLVMALAVRLKVYDWDVVAMAK 121
Query: 134 GMFVPK 139
G ++ +
Sbjct: 122 GTWISE 127
>gi|87299143|emb|CAJ76209.1| competence transcription factor C [Bacillus sp. Bt 24]
Length = 99
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 32/82 (39%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ L L+ +SD+ +IP+ V L F + L+ ++ +L +
Sbjct: 18 ELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRLLVPLEQWHSSLSGAMAGG 77
Query: 68 VFIICFCFFAFNIMGGGDVKLL 89
+ + +G GDVKL
Sbjct: 78 MLPLLTLLLTKGGIGWGDVKLF 99
>gi|54025604|ref|YP_119846.1| putative peptidase [Nocardia farcinica IFM 10152]
gi|54017112|dbj|BAD58482.1| putative peptidase [Nocardia farcinica IFM 10152]
Length = 150
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 10/156 (6%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ S F++ + DL + +PN ++ +G+ + + G +AL + L
Sbjct: 1 MTSFAFVLLAAWCAALTVIDLRTRRLPNVLT--GIGAAAVLGYAAGSGRLGVALGGALLL 58
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + A G GD KL G S + A+ G +L+ +
Sbjct: 59 ALPYLLVHLLAPTACGAGDAKLAVGLGAAAGLGGS--TAWVAAALGGPLLTAAV------ 110
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ + ++P+G A+ L++
Sbjct: 111 GLVVLGARGPATRGSPADRRLPHGPAMCAATLLALL 146
>gi|320322714|gb|EFW78807.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
glycinea str. B076]
Length = 156
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 4/151 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ V A D I N +++ G + + +
Sbjct: 3 LFLLLVWFVICAEQDARRKHISNGLTLGATTLAAAWLAGTGTTWLGAPPLEAALALALAL 62
Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+A +G GDVKL+ + A+ +F+ + + I
Sbjct: 63 GLTLPGYALGKLGAGDVKLMAALALASDSVYLLCTFIGAGIAALTWVLLARKVQHHINQR 122
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++ +K P+ + G L++
Sbjct: 123 VAQRYAYMFP--DAPDKYPFSPFLLAGLLLT 151
>gi|118617789|ref|YP_906121.1| N-term polyprenol-monophosphomannose synthase Ppm1A [Mycobacterium
ulcerans Agy99]
gi|118569899|gb|ABL04650.1| N-term polyprenol-monophosphomannose synthase Ppm1A [Mycobacterium
ulcerans Agy99]
Length = 605
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 9/125 (7%)
Query: 35 RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF-IICFCFFA--FNIMGGGDVKLLTS 91
R+ +++ +V + + + + +G G V L
Sbjct: 21 RLVRLVVSLVAGFLMYASFPPTNWWWAAIVSVALLTWVLMHPASTPVGGLGYGFVFGLAC 80
Query: 92 TAVWFGWTPSF------LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
W + L A+ G+ + + VR + F + +K+
Sbjct: 81 FVPLLPWIGTLVGPVPWLVLATTSALFPGLFGLSAVVVRRLPGWPIWFAVLWGAQEWLKS 140
Query: 146 KIPYG 150
+P+G
Sbjct: 141 IVPFG 145
>gi|145219377|ref|YP_001130086.1| peptidase A24A, prepilin type IV [Prosthecochloris vibrioformis DSM
265]
gi|145205541|gb|ABP36584.1| peptidase A24A, prepilin type IV [Chlorobium phaeovibrioides DSM
265]
Length = 237
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 22/141 (15%)
Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIALHLLVGLIVFIICFCFFA----F 78
+D + M+P+RV + + + L ++ A V L + +
Sbjct: 110 TDWDTTMLPDRVVLPLGLAGLGASYAGLTQQSLISSAASSAVMLGLLGGIGWVYKSIKGE 169
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+ MGGGD+KLL + A W+G A G + V+ + R N P
Sbjct: 170 SGMGGGDLKLLAALAAWWGVLGVLYVV----AGAGIVTVVWYVVWRQFKNFSPEAEW--- 222
Query: 139 KSFLMKNKIPYGIAISMGGLI 159
P+G AI + L+
Sbjct: 223 ---------PFGPAIVVAALV 234
>gi|302669438|ref|YP_003829398.1| prepilin peptidase [Butyrivibrio proteoclasticus B316]
gi|302393911|gb|ADL32816.1| prepilin peptidase [Butyrivibrio proteoclasticus B316]
Length = 131
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 2/131 (1%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
L A ++DL+ I N + L + L+ A + G A L+ L F++
Sbjct: 1 MLLFLSGAVITDLYKDKIYNVWVVPGLLTGLIAALIQGGGR--FAEALMATLTAFLVLMP 58
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+ + GDVKLL STA + + + LF I G I V I+ R
Sbjct: 59 IYWLKGIAAGDVKLLLSTASFLSFQELYSCILFSFLIAGAISLVIIIFKREKKTLHFAVP 118
Query: 135 MFVPKSFLMKN 145
+F ++
Sbjct: 119 VFASTILVLGG 129
>gi|225375141|ref|ZP_03752362.1| hypothetical protein ROSEINA2194_00765 [Roseburia inulinivorans DSM
16841]
gi|225213015|gb|EEG95369.1| hypothetical protein ROSEINA2194_00765 [Roseburia inulinivorans DSM
16841]
Length = 177
Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 1/115 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ ++ L A D + + + ++ + +L + + +
Sbjct: 1 MLEGIRMIVLLVSLFLCAWIDWKTERVSVPLLLLGGMAAVLLHLFAQEESVFYLMTGMSV 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
I + + +G GD L T ++ G + + L + G +V +
Sbjct: 61 GIAL-LLYSLVTHESIGYGDGCLFVMTGLFLGIWENLVLLLLASVLAGIGSAVLL 114
>gi|19705382|ref|NP_602877.1| integral membrane protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|19713369|gb|AAL94176.1| Integral membrane protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 165
Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 6/142 (4%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFN 79
D+ IPN ++ +L + + +D I I+ +
Sbjct: 16 VMYIDINKKYIPNVLNFSILVLSIFICGIDKVDIFFIGASCYTLPILIFYGYISDILKKE 75
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+ G D+KL+ FF+ I L VF L I +I I
Sbjct: 76 VFGFDDIKLIIPLGGLL----YLGEINFFLQIYIFYLLVFSLATLYIIIYIVISYCRNKP 131
Query: 140 SFLMKNKIPYGIAISMGGLISY 161
+ ++ + I + +I Y
Sbjct: 132 VKIRGVELAFAPYICLAFIIIY 153
>gi|15896039|ref|NP_349388.1| Signal peptidase type IV [Clostridium acetobutylicum ATCC 824]
gi|15025823|gb|AAK80728.1|AE007776_4 Signal peptidase type IV [Clostridium acetobutylicum ATCC 824]
gi|325510193|gb|ADZ21829.1| Signal peptidase type IV [Clostridium acetobutylicum EA 2018]
Length = 254
Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 17/171 (9%), Positives = 46/171 (26%), Gaps = 23/171 (13%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT---AFLLGMDYEL 57
+K + + F++ L ++ DL + + ++ + S ++
Sbjct: 88 LKYGYQLITLKFIVLFSFLFIISIIDLDTTNVYLCTTLPGIISGIIFIAINIFYKNHIYG 147
Query: 58 IALHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
+ V ++ G GD ++L ++ G + G
Sbjct: 148 YLFAAFLYSGVIVLINIITKKIIDMPAFGSGDAEVLLMCGLFLGMKLGMFMLFISFVLAG 207
Query: 114 GILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ IL + I + ++ +I+
Sbjct: 208 FVSIGLILLKIK----------------DRMDYIAFVPFVAAASVITILYG 242
>gi|284032269|ref|YP_003382200.1| peptidase A24A prepilin type IV [Kribbella flavida DSM 17836]
gi|283811562|gb|ADB33401.1| peptidase A24A prepilin type IV [Kribbella flavida DSM 17836]
Length = 235
Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 24/173 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL------LGMDYELIALHL 62
A +L+ D + +P+ + G+ + A+
Sbjct: 79 LAAWLVLTVSGAVLGYIDARTRYLPSAIIWPTYGAVAAALVVGAAVSGQWGSLRRAAIAG 138
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFI 120
++G VF + + F +G GDV+L + GW ++ L+ LG +L V +
Sbjct: 139 VIGFGVFYLLWFVF-PRGVGFGDVRLSGLLGMALGWLGWGELITGLYGGFFLGAVLGVVL 197
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
++ P+G + +G + + +G
Sbjct: 198 TLAKVFKRREM---------------FPFGPFMLVGAVAGVLFGEPLERLYLG 235
>gi|83720542|ref|YP_442982.1| CpaA2 pilus assembly protein [Burkholderia thailandensis E264]
gi|167620128|ref|ZP_02388759.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis Bt4]
gi|257139206|ref|ZP_05587468.1| CpaA2 pilus assembly protein, putative [Burkholderia thailandensis
E264]
gi|83654367|gb|ABC38430.1| probable CpaA2 pilus assembly protein , putative [Burkholderia
thailandensis E264]
Length = 161
Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 9/155 (5%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
++ + ++ + L AL+DL + + ++ + + A A H +G
Sbjct: 2 LMILPLKIVASWTLASLALADLRTRRLATFAVALVGALYGVQALAGAPGDGGFAPHAAIG 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
I F F + GGDVKL +W G ++ + V I R
Sbjct: 62 AIAFAFGAAMFRIGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGVVCIAARRA 121
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F +PYG+A++ GG+++
Sbjct: 122 PRALAW---------FAPARGVPYGVALAAGGVLA 147
>gi|225375133|ref|ZP_03752354.1| hypothetical protein ROSEINA2194_00757 [Roseburia inulinivorans DSM
16841]
gi|225213007|gb|EEG95361.1| hypothetical protein ROSEINA2194_00757 [Roseburia inulinivorans DSM
16841]
Length = 129
Score = 37.9 bits (87), Expect = 0.57, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
I NR+ + L L+ G Y I +L I ++ F F + +G GD+KL
Sbjct: 1 MKISNRLIVCGLIWGLVLKIW-GNGYVGILYFILNITIPVVLLFLLFQMHALGAGDIKLF 59
Query: 90 TSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ + FL +F + +L +
Sbjct: 60 SLVGSFLTTKQLFL-VMFDSFLFAAVLGMG 88
>gi|328470515|gb|EGF41426.1| hypothetical protein VP10329_06942 [Vibrio parahaemolyticus 10329]
Length = 147
Score = 37.9 bits (87), Expect = 0.57, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 16/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ A++L ++ D+ ++ +R +++ + LL+ F L V
Sbjct: 4 INFALWLTCLVNVLLIFYGDIRYRIVKHRFLLIIFITSLLSLFFTPEPLTQ----LAVSS 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
VFI F + NI+GGGDVKL+ + + + + + G + V L
Sbjct: 60 SVFICFFILWLINIVGGGDVKLIGALFLGVNDEYMLAAIVAIGLLGGIQILVMWLMSVYR 119
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+N IPY I I + GL + S
Sbjct: 120 KKTPF------------ENGIPYTIPIGISGLFFFYMS 145
>gi|296170779|ref|ZP_06852351.1| A24 family peptidase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894594|gb|EFG74331.1| A24 family peptidase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 139
Score = 37.9 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 2/135 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L + D+ +PN +++ ++ G AL L +
Sbjct: 7 VVVLVWLAALSGYDVRERRLPNPLTLPGA--GVILVAATGAGRGGDALAGAAALAAIYLL 64
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
A MG GDVKL G + + FL +A ++ H P
Sbjct: 65 VHVVAPVGMGAGDVKLAVGLGALAGSFGAGVWFLAALAAPLLTALFAVVCRARTVPHGPS 124
Query: 133 FGMFVPKSFLMKNKI 147
+ + + I
Sbjct: 125 MCLATAAAVGLAVGI 139
>gi|300709417|ref|YP_003735231.1| peptidase A24A prepilin type IV [Halalkalicoccus jeotgali B3]
gi|299123100|gb|ADJ13439.1| peptidase A24A prepilin type IV [Halalkalicoccus jeotgali B3]
Length = 326
Score = 37.9 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-----DYELIALHLLVGLI 67
++ L +AA D+ + +P R + + G+ A L+ I
Sbjct: 1 MLCVPVLAWAAHRDVRTRRVPARTWTPLFALAAVLFVWDGIASYFAGGLTWAYFLVGAAI 60
Query: 68 VFIIC----FCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
++ + F+ F GG D K L A+ F P+
Sbjct: 61 SLLLVIPAAYGFWRFGAFGGADAKALIVLALLFPTYPT 98
>gi|289570720|ref|ZP_06450947.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544474|gb|EFD48122.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length = 142
Score = 37.9 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 2/130 (1%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
+ + D+ +PN +++ G LL A L G +A + + ++
Sbjct: 10 VAWMGVLCVCDVRQRRLPNWLTLPGAGVILLFAGLAGRGVPALAGAAALAGVYLLVHLAL 69
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
A MG GDVKL G + FL +A ++ +P
Sbjct: 70 PA--AMGAGDVKLAIGLGGLTGCFGVEVWFLAALAAPLLTAVCGVMVTPWGVRTLPHGPS 127
Query: 136 FVPKSFLMKN 145
S
Sbjct: 128 MCVASLGAVG 137
>gi|167957548|ref|ZP_02544622.1| hypothetical protein cdiviTM7_02709 [candidate division TM7
single-cell isolate TM7c]
Length = 239
Score = 37.9 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL---GMDYELIALHLLVGLIVFIICFC 74
L + DL ++P+ ++I + + + + D LL +++ +
Sbjct: 137 LLAILFVYDLKWLLLPDVINIPFIILGFVFSIINLVLSNDLTKSLTSLLGSVVILSGIYL 196
Query: 75 FFAF----------NIMGGGDVKLLTSTAVWF 96
+G GDVKL A++
Sbjct: 197 LLYLFSKYRYGEEKTWVGFGDVKLGLGLALFL 228
>gi|307258828|ref|ZP_07540560.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 11
str. 56153]
gi|306867179|gb|EFM99035.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 11
str. 56153]
Length = 98
Score = 37.9 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ S + + L+ +DL +I NRV + +L + ++L+ +
Sbjct: 2 TLFISTLIAVMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLMYGS-----ISWFP 56
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
++ +I F F N++G GDVKLL + +
Sbjct: 57 AILCLVIGFVLFLLNVIGAGDVKLLAVLMLAVPSPFAVFFLF 98
>gi|309792801|ref|ZP_07687244.1| peptidase A24A domain protein [Oscillochloris trichoides DG6]
gi|308225165|gb|EFO78950.1| peptidase A24A domain protein [Oscillochloris trichoides DG6]
Length = 247
Score = 37.9 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 54/162 (33%), Gaps = 20/162 (12%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
L+ + D I V + L+ L+GMD+ + L L+G I+F+
Sbjct: 98 YLTFICAILILTGVIDWLHRWIYTFVILGAALVALIVGPLVGMDWRNVLLGALIGGIMFL 157
Query: 71 ICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ F F G GDV L G + + + I G + + I+ R
Sbjct: 158 LLFVLAKFIFPGHAAPFGLGDVYLAIFIGASVGVINLTAAIIPGMLIAGVVAAGIIIMRR 217
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
M + I YG + +G L+ L
Sbjct: 218 MGRPTP--------------DYIAYGSYLCLGTLLFIISGGL 245
>gi|309777421|ref|ZP_07672379.1| putative leader peptide processing enzyme (late competence protein)
[Erysipelotrichaceae bacterium 3_1_53]
gi|308914817|gb|EFP60599.1| putative leader peptide processing enzyme (late competence protein)
[Erysipelotrichaceae bacterium 3_1_53]
Length = 172
Score = 37.9 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 7/137 (5%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-------L 60
+ + I + A SD +IPNR+ I ++ ++ LL + +
Sbjct: 24 EAIQWQIALHFAIACAKSDYHKKIIPNRLIITLMLFAVIVLILLLIQHTTYYRLIMTSKA 83
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ +F++ F + G GDVK L++ G F FLF + ++
Sbjct: 84 AGGLVTFIFMVICNFLSRGGFGAGDVKFLSALGFLLGIRGIFNVFLFTMISSACTGIFYM 143
Query: 121 LTVRMITNHIPIFGMFV 137
+T + G F+
Sbjct: 144 ITRKKSGKDTMPLGPFI 160
>gi|126465873|ref|YP_001040982.1| peptidase A24A, prepilin type IV [Staphylothermus marinus F1]
gi|126014696|gb|ABN70074.1| peptidase A24A, prepilin type IV [Staphylothermus marinus F1]
Length = 267
Score = 37.5 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 6/154 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELI 58
M ++ + L ++ D+ IP+ LG ++ ++ +
Sbjct: 1 MDIHVLIDLVKIVFSLIVLFIFSIYDIKYRDIPDIYVWSFLGISIVLFIFTITQYEFTVF 60
Query: 59 ALHLLVGLIVFIIC--FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+ ++ ++F + MG DV + S A F +T + L + G +
Sbjct: 61 LISFIMMSLLFGGGVPLALYFLGYMGAADVIAIVSLAFLFPYTDIYKYSLLTSGVEGVHI 120
Query: 117 --SVFILTVRMITNHIPIFGMFVPKSFLMKNKIP 148
I+ I + + + + ++K+P
Sbjct: 121 PPVFVIILYSTIVYLVYLPFKIMYILLVHRDKLP 154
>gi|330895601|gb|EGH27909.1| peptidase A24A, prepilin type IV [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 156
Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 8/153 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVF 69
A D I N +++ ++ L GM + LL +
Sbjct: 3 LFFLLIWFAICAEQDARCKQISNGLTLGAAALAIIYLALTGMTWLGSPAREALLAVTLAL 62
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +A +G GDVKL+T+ A+ +F+ G ++ +++ +
Sbjct: 63 ALTLPGYALGKLGAGDVKLMTALALASNSAYLLGTFIGA----GVAMATWLIVAKRAWPP 118
Query: 130 IPIFGMFVPKSFLMKNK--IPYGIAISMGGLIS 160
+ + P+ + G L+S
Sbjct: 119 TQQWVTQRYRYMNPTAPDKYPFSPFLFAGLLLS 151
>gi|218691162|ref|YP_002399374.1| Prepilin peptidase [Escherichia coli ED1a]
gi|218428726|emb|CAR09518.1| Prepilin peptidase [Escherichia coli ED1a]
Length = 218
Score = 37.5 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 7/132 (5%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
I L L+D+ +P ++ ++ L+ + +
Sbjct: 68 LLFLSILTGLLTVMTLTDIAVCRLPRIFTLSLIILGAAFR-YSQDSLAHALLNASLWFGM 126
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ F +G GDV L+ A+W + + A G L + I R
Sbjct: 127 IYLLRRIFLAVKGTEALGLGDVFLIAGIAMWTQPQHTP--LIITAAASGAFLFILIFCRR 184
Query: 125 MITNHIPIFGMF 136
+P
Sbjct: 185 RRQQALPFAPFL 196
>gi|315655394|ref|ZP_07908294.1| putative prepilin peptidase [Mobiluncus curtisii ATCC 51333]
gi|315490334|gb|EFU79959.1| putative prepilin peptidase [Mobiluncus curtisii ATCC 51333]
Length = 227
Score = 37.5 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELI 58
M + ++ + + L+D ++PNR+ + L +L +
Sbjct: 67 MCCTHLLLTLPVYLSTAPFCVLFLTDARYRLLPNRLLGLGAAMLLPLLSILAIILHDPEA 126
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG---WTPSFLSFLFFVAILGGI 115
+ V + + F +G GDVKL + W G W + L + G
Sbjct: 127 LARVWVLALAMGLVLAFATHFGLGMGDVKLGALLSAWLGLYDWFAPLVMLLLASFLAGVF 186
Query: 116 LSVFILTVRMITNHIPIFGMFV 137
+ I++ ++ ++ FG ++
Sbjct: 187 ALILIISKKLDLDNDIAFGPWL 208
>gi|300715318|ref|YP_003740121.1| type 4 prepilin peptidase 1 [Erwinia billingiae Eb661]
gi|299061154|emb|CAX58261.1| similar to type 4 prepilin peptidase 1 [Erwinia billingiae Eb661]
Length = 230
Score = 37.5 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 23/152 (15%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLLVGLIVFIICFCFF---- 76
+ DL ++P+ +++ +L LL + L G V + +
Sbjct: 95 VIDLRYLLLPDVLTLALLWLGLLGNVAGVISSALLTEAVLGAAAGFTVLALLSYGYRMVC 154
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+G GD KLL + W G + L L +
Sbjct: 155 KKEGLGLGDAKLLAALGAWLGVYWLPILVLMASLASLIALGIMQWVSGRP---------- 204
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
+++ P+G A+++ G + + + +
Sbjct: 205 ------LRDPFPFGAALAVSGWLLFICNPVVA 230
>gi|297527453|ref|YP_003669477.1| peptidase A24A prepilin type IV [Staphylothermus hellenicus DSM
12710]
gi|297256369|gb|ADI32578.1| peptidase A24A prepilin type IV [Staphylothermus hellenicus DSM
12710]
Length = 262
Score = 37.5 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 8/150 (5%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M+ L ++ D+ IP LG+ ++ + + I L+
Sbjct: 1 MIDLVKIAFSLIVLSIFSIYDIKYRDIPGIYVWFFLGASIVLFIFT-ITWYEITWFLMSF 59
Query: 66 LIVFIIC-----FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL--SV 118
+++ ++ + MG DV + S A F +T + L ++ G +
Sbjct: 60 IVMSLLFGGGVPLALYFLGYMGSADVIAIVSLAFLFPYTDVYKYSLLASSVGGIHVPPIF 119
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIP 148
I+ I + + + + ++K+P
Sbjct: 120 VIILYSTIVYLVYLPFKIIYVLLVHRDKLP 149
>gi|260892662|ref|YP_003238759.1| peptidase A24A prepilin type IV [Ammonifex degensii KC4]
gi|260864803|gb|ACX51909.1| peptidase A24A prepilin type IV [Ammonifex degensii KC4]
Length = 164
Score = 37.5 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 41/149 (27%), Gaps = 12/149 (8%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
A +DL S +IP++ ++ ++ + L+ G + + L +
Sbjct: 20 AVGAYADLKSGVIPDKATLPVILAGLVYGLCTGHLWWGLVGFLAALALFGGAALAGGVG- 78
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+ + G+ + R +
Sbjct: 79 --------GGDLKLALGLGLWLGPFGFLWAVAVAGLSAFLYGAARKARKKELRLWAWRFA 130
Query: 140 SFLMKNK---IPYGIAISMGGLISYPDSY 165
+ +P+G + +G L S+ S
Sbjct: 131 TGAPVAGSEAVPFGPFLCLGALASFLLSP 159
>gi|110666997|ref|YP_656808.1| prepilin signal peptidase [Haloquadratum walsbyi DSM 16790]
gi|109624744|emb|CAJ51151.1| probable prepilin signal peptidase [Haloquadratum walsbyi DSM
16790]
Length = 345
Score = 37.5 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 13/154 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL------LGMDYELIAL 60
+ + L LV+AA D+ + +P+ + ++ ++ G+ +
Sbjct: 5 ISDLLRLCIMPILVWAAWRDVKTRRLPSYLWPPLVMLGVVLLVWDTSVYFSGLSPIYTPI 64
Query: 61 HLLVGL-------IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
+ I+ + + +A GG D K+L + A+ P + ++
Sbjct: 65 AIAFLFRVSVSCLIIIPLSYGLWAIGGFGGADAKVLMTLAILIPTVPIYQFLGMTFPVVT 124
Query: 114 GILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
L VF LT+ T + + +++
Sbjct: 125 APLGVFSLTILTNTVVLTAAYPINLILHNITDRV 158
>gi|266619844|ref|ZP_06112779.1| putative type IV prepilin peptidase [Clostridium hathewayi DSM
13479]
gi|288868553|gb|EFD00852.1| putative type IV prepilin peptidase [Clostridium hathewayi DSM
13479]
Length = 130
Score = 37.5 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ L++A++ D + +P+ V +++L + + L +L + + +
Sbjct: 5 LVFYAILLYASVRDHKTHTVPDSVHVLILLAAI------PGIRLLSSLLGFFLVPLPFLA 58
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ +GGGD+KL+ ++ + G + + + + + F+
Sbjct: 59 AALKKPDSIGGGDIKLMAASGFFLGMEKGIAAAIIGLTLAVLVQGAFL 106
>gi|302832309|ref|XP_002947719.1| hypothetical protein VOLCADRAFT_87874 [Volvox carteri f.
nagariensis]
gi|300267067|gb|EFJ51252.1| hypothetical protein VOLCADRAFT_87874 [Volvox carteri f.
nagariensis]
Length = 2908
Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 12/146 (8%)
Query: 36 VSIVMLGSFLLTAF-----LLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLT 90
+ ++ L LL H +I F I N+ G K+
Sbjct: 263 LMLIFLVIALLFNMAEVEVNPASKLPQALGHSGGAMIAFGIKALMTLVNVF-LGWPKVAA 321
Query: 91 S----TAVWFGWTPS--FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
A W W S L +V L ++ +L+ + + + M
Sbjct: 322 VAYCVLAAWLLWEHLRWVPSLLIWVNCLEAGVATAMLSTAALQVMLVFLPRSASRDLTMA 381
Query: 145 NKIPYGIAISMGGLISYPDSYLFKVA 170
I G A ++G + SY LF VA
Sbjct: 382 MAISLGPAFAVGAVASYLRIKLFHVA 407
>gi|28900573|ref|NP_800228.1| hypothetical protein VPA0718 [Vibrio parahaemolyticus RIMD 2210633]
gi|28808953|dbj|BAC62061.1| putative membrane protein [Vibrio parahaemolyticus RIMD 2210633]
Length = 147
Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 16/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ A++L ++ D+ ++ +R +++ + LL+ F L V
Sbjct: 4 INFALWLTCLVNVLLIFYGDIRYRIVKHRFLLIIFITSLLSLFFTPEPLTQ----LAVST 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
VFI F + NI+GGGDVKL+ + + + + G + V L
Sbjct: 60 SVFICFFILWLINIVGGGDVKLIGVLFLGVNDEYMLAAIVAIGLLGGIQILVMWLMSVYR 119
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+N IPY I I + GL + S
Sbjct: 120 KKTPF------------ENGIPYTIPIGISGLFFFYMS 145
>gi|302387868|ref|YP_003823690.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
gi|302198496|gb|ADL06067.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
Length = 188
Score = 37.5 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 55/157 (35%), Gaps = 28/157 (17%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ ++ L+ A + DL + IP+ + +++ + L+ ++ + L ++
Sbjct: 60 TALRCVLLCQVLMVAGVFDLMTYEIPDCLHLMIAMAGLI-------HFQPLPALLGFLIV 112
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+GGGDVKL+ ++ G T ++ +AI
Sbjct: 113 PLPFLIAALKTEKIGGGDVKLMAASGFSLGVTGGIWMMIWGLAIA--------------- 157
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ + +P ++ G ++ +
Sbjct: 158 ------LLWNRAFCREQKSLPLAPFLAFGAFLTLFPT 188
>gi|237737590|ref|ZP_04568071.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
gi|229419470|gb|EEO34517.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
Length = 143
Score = 37.5 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 23/147 (15%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC----FFAF 78
D+ IPN +++++L + E + + + + + +
Sbjct: 14 MWIDIKKLYIPNFLNLLLLIIAIYLKKFDYEIIENSIIGMGIYTLPLLFLYGYLSDILNK 73
Query: 79 NIMGGGDVKLLTSTAVWFGWTPSF--LSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
+ G GD+KLL + G++ F F I + + +L +
Sbjct: 74 EVFGFGDIKLLMTLGYILGYSNFFDIYLFYLISFISASFIGIILLIRK------------ 121
Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPD 163
+ +IP+ + +G L +
Sbjct: 122 -----TKRKEIPFSPFLIIGFLFLWLR 143
>gi|81429383|ref|YP_396384.1| putative type IV leader peptidase ( type II secretion system)
[Lactobacillus sakei subsp. sakei 23K]
gi|78611026|emb|CAI56079.1| Putative type IV leader peptidase (Bacterial type II secretion
system) [Lactobacillus sakei subsp. sakei 23K]
Length = 229
Score = 37.5 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 24/155 (15%)
Query: 12 FLIPPFCLVFAALSDLFSAMI-PNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
L + +L DLF ++ P + ++ F L L +
Sbjct: 97 LAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHW--------LGAIVFCCG 148
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ + + G GDV+LLT +W G L I +
Sbjct: 149 LLLTTYWASGFGFGDVELLTILTLWVGLESVLRILLAACLICILFQGI------------ 196
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
P +IP+ ISMG +I +
Sbjct: 197 ---KKIWPSPKQATRQIPFIPYISMGVVIILLQTP 228
>gi|84496688|ref|ZP_00995542.1| hypothetical protein JNB_04175 [Janibacter sp. HTCC2649]
gi|84383456|gb|EAP99337.1| hypothetical protein JNB_04175 [Janibacter sp. HTCC2649]
Length = 232
Score = 37.5 bits (86), Expect = 0.71, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 22/166 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSF--LLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ V D+ +P ++ L +F LL + + + V
Sbjct: 81 FAWLSVCLVWIDIDVHRLPVGLTRPALPAFALLLIPPTIATGEWDRLVSAGICCAVLTAI 140
Query: 73 FCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTVRMIT 127
+ FAF GGGDV+L + + GW + +LGG + +L
Sbjct: 141 YVAFAFLPGGGFGGGDVQLAPTIGLLLGWFSVGHVVVGTLAAFVLGGFGAGVLLVTGRAG 200
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
K+ + +G + G ++ + L+G
Sbjct: 201 ---------------RKSAMAFGPFMCGGVFVALAGTEQVLAGLVG 231
>gi|315652224|ref|ZP_07905219.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315485530|gb|EFU75917.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 212
Score = 37.5 bits (86), Expect = 0.72, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 25/160 (15%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--------YE 56
++ + L + A D +IPN + +L + + +
Sbjct: 61 DILKTFKALAIISITLITARIDCREKIIPNEAIVCILSIACVLMIINAFTNTVEALAIFI 120
Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+ +L+G+++F N +G GD+KL+ + ++ T + + L I I
Sbjct: 121 DSIVAMLIGVLLFAASKVISK-NGVGMGDIKLVGALGLYL-RTYALMGVLLVALISIAIY 178
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
+ + + S K++IP+G ++ G
Sbjct: 179 GLIKIISK---------------SATAKDEIPFGPFVAFG 203
>gi|322805633|emb|CBZ03198.1| late competence protein ComC, processing protease [Clostridium
botulinum H04402 065]
Length = 139
Score = 37.5 bits (86), Expect = 0.72, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 18/149 (12%)
Query: 27 LFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICFCFFAFNIMGGG 84
+ + + ++++I + ++ + + V L I F MG G
Sbjct: 1 MDTTDVYSKITISAMIIGVIYILIEKFYFGYGIKTYMYAVLLCTTAIGTIIFTTKGMGSG 60
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
D+ + +++ G+ + ++ LFF I G ++ +F++ + K
Sbjct: 61 DLDIYIIVSLFLGFKITAMT-LFFSFIFGALIGIFLIISKRK---------------TKK 104
Query: 145 NKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ IP+G I+M + S + +
Sbjct: 105 DYIPFGPFIAMASIFSILFGDKVSLLYIS 133
>gi|146296099|ref|YP_001179870.1| peptidase A24A domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409675|gb|ABP66679.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 258
Score = 37.5 bits (86), Expect = 0.72, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFS--AMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHL 62
+ + + + L++ ++ D + + N + + +L + I L
Sbjct: 95 ISAFLLFVIGCVLLYISVVDFKTYEMSVGNLLLLAILKLAFEVSIKGIAKTTIIYILLGP 154
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ + + + MG GDV LL + + F + + + +
Sbjct: 155 ILNTFLVGLIYIISRGIAMGLGDVLLLMAGGIGFSVRQAIVCNFVAFFVAFLYVL----- 209
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F + K K +IP+G IS+G +S
Sbjct: 210 -------GLKFVQSILKGNEKKREIPFGPFISIGIFVS 240
>gi|282163924|ref|YP_003356309.1| putative A24 family peptidase [Methanocella paludicola SANAE]
gi|282156238|dbj|BAI61326.1| putative A24 family peptidase [Methanocella paludicola SANAE]
Length = 267
Score = 37.5 bits (86), Expect = 0.74, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 10/160 (6%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + + I L ++ ++D PNR+ +M G L+
Sbjct: 1 MYGWEWLDIVRIAICLVILGYSCVTDWKIRRAPNRLWYIMGGIGLVLGLYQLYSLNFNNY 60
Query: 61 HLLVGLIVFIICFCFFA----------FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+ + I F + +GG D K L + A+ F + P +
Sbjct: 61 LVFSWALNIIFIFVLMYFLFYFFQYFGMSGLGGADAKALMAIALMFPYYPIIDIAGLSLP 120
Query: 111 ILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYG 150
+ S+ + + +P+G
Sbjct: 121 LTSVSRSIIFGLAVFGNALALNLVVPIAILIYNLVTVPFG 160
>gi|332845669|ref|XP_510917.3| PREDICTED: serine/threonine-protein kinase TAO2 isoform 2 [Pan
troglodytes]
Length = 1235
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 978 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 1032
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 1033 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 1079
>gi|332266089|ref|XP_003282048.1| PREDICTED: serine/threonine-protein kinase TAO2 isoform 2 [Nomascus
leucogenys]
Length = 1184
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 927 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 981
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 982 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 1028
>gi|332266087|ref|XP_003282047.1| PREDICTED: serine/threonine-protein kinase TAO2 isoform 1 [Nomascus
leucogenys]
Length = 1235
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 978 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 1032
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 1033 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 1079
>gi|297698503|ref|XP_002826357.1| PREDICTED: serine/threonine-protein kinase TAO2-like isoform 2
[Pongo abelii]
Length = 1122
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 865 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 919
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 920 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 966
>gi|219841904|gb|AAI44345.1| TAOK2 protein [Homo sapiens]
Length = 1122
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 865 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 919
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 920 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 966
>gi|148745103|gb|AAI42664.1| TAO kinase 2 [Homo sapiens]
gi|153217436|gb|AAI51222.1| TAO kinase 2 [Homo sapiens]
Length = 1235
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 978 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 1032
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 1033 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 1079
>gi|30353923|gb|AAH51798.1| TAOK2 protein [Homo sapiens]
Length = 1426
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 1169 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 1223
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 1224 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 1270
>gi|6808064|emb|CAB70882.1| hypothetical protein [Homo sapiens]
gi|119600371|gb|EAW79965.1| TAO kinase 2, isoform CRA_c [Homo sapiens]
Length = 1062
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 805 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 859
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 860 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 906
>gi|45505130|ref|NP_057235.2| serine/threonine-protein kinase TAO2 isoform 2 [Homo sapiens]
gi|116242813|sp|Q9UL54|TAOK2_HUMAN RecName: Full=Serine/threonine-protein kinase TAO2; AltName:
Full=Kinase from chicken homolog C; Short=hKFC-C;
AltName: Full=Prostate-derived STE20-like kinase 1;
Short=PSK-1; AltName: Full=Thousand and one amino acid
protein 2
gi|119600369|gb|EAW79963.1| TAO kinase 2, isoform CRA_a [Homo sapiens]
gi|187957506|gb|AAI36654.1| TAO kinase 2 [Homo sapiens]
gi|223460882|gb|AAI36656.1| TAO kinase 2 [Homo sapiens]
Length = 1235
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 978 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 1032
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 1033 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 1079
>gi|5616074|gb|AAD45616.1|AF061943_1 prostate derived STE20-like kinase PSK [Homo sapiens]
Length = 1235
Score = 37.5 bits (86), Expect = 0.75, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
G ++G G LL TA+ S +A + +V L
Sbjct: 978 AAQGGGGLQAALLALEVGLVGLGASYLLLCTAL-----HLPSSLFLLLAQGTALGAVLGL 1032
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
+ R +P+ +P +A++ GG +
Sbjct: 1033 SWRRGLMGVPLGLGAAWLLAWPGLALPL-VAMAAGGRWVRQQGPRVRR 1079
>gi|326403161|ref|YP_004283242.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
gi|325050022|dbj|BAJ80360.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
Length = 252
Score = 37.5 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L + ++ + +G GD KLL + A W + + + + +
Sbjct: 161 YLGFTGLRLLWRRLRGIDALGAGDAKLLAAGAAWLPPAALPWAVVIAGIAGLAGFAAWAV 220
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K+P+G A++ G L+
Sbjct: 221 LRAEAGGAPLA-----------RQKLPFGPALAFGLLVV 248
>gi|330873721|gb|EGH07870.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 158
Score = 37.5 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 43/153 (28%), Gaps = 6/153 (3%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ V A D I N +++ G + + +
Sbjct: 3 LFLLLVWFVICAEQDARRKHISNGLTLGATTLAAAWLAGTGTTWLGAPPLEAALALALAL 62
Query: 72 CFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+A +G GDVKL+ + A +F+ + + I
Sbjct: 63 ALGLTLPSYALGKLGAGDVKLMAALAFASDSVYLLCTFIGAGIAALTWVLLARKVQHHIN 122
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++ +K P+ + G L++
Sbjct: 123 QRVAQRYAYMFP--DAPDKYPFSPFLLAGLLLT 153
>gi|167725244|ref|ZP_02408480.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei DM98]
Length = 130
Score = 37.5 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 14/129 (10%)
Query: 51 LGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+ + A L + F+ M GDVKL+ + W G T + L
Sbjct: 1 MPGPHTGFAAWLAGAATGAGLLLPFYLVRGMAAGDVKLMLAIGAWVGPTLALHIALATFV 60
Query: 111 ILGGILSVFILTVRMITNHIP--------------IFGMFVPKSFLMKNKIPYGIAISMG 156
+ G + + +PYG+AI++G
Sbjct: 61 VGGAWALAVVARRGRFRKLLANLRHLFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIG 120
Query: 157 GLISYPDSY 165
L +
Sbjct: 121 TLGVLFAAA 129
>gi|17226363|gb|AAL37753.1|AF436069_1 leader peptidase PilD [Thermus thermophilus HB27]
Length = 354
Score = 37.5 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 24/95 (25%)
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MG GDVKLL + W G FL +F +
Sbjct: 281 AMGYGDVKLLGALGAWLGPYAFLALFL------------------------GVFAGALLG 316
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
L + K+P+G +++GG++++ A + L
Sbjct: 317 LLLRQRKLPFGPYLALGGVVAFFFGEALWGAYLRL 351
>gi|257791510|ref|YP_003182116.1| peptidase A24A prepilin type IV [Eggerthella lenta DSM 2243]
gi|257475407|gb|ACV55727.1| peptidase A24A prepilin type IV [Eggerthella lenta DSM 2243]
Length = 306
Score = 37.2 bits (85), Expect = 0.84, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 22/166 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL------GMDYELIAL 60
+ A++ F V AL D+ S IP + +V++ + G L +
Sbjct: 153 ISVALYGGIVFSSVVLALCDVRSRTIPFVMPLVLVVLGAAFQWASFGLEKLGAAVVLALV 212
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ ++ +G GDV + + + G + + A+ +L
Sbjct: 213 FGAALLVTSLVGSFVRKSQAVGMGDVLTMPAVVLCAGLPGAAYGLVLGFALGAIVLV--- 269
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
V + ++P+G ++ + +
Sbjct: 270 -------------TRRVVLGLRIMERVPFGPVLAACAIAGPLITVW 302
>gi|148239485|ref|YP_001224872.1| prepilin peptidase, type IV [Synechococcus sp. WH 7803]
gi|147848024|emb|CAK23575.1| Prepilin peptidase, type IV [Synechococcus sp. WH 7803]
Length = 271
Score = 37.2 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 16/118 (13%)
Query: 53 MDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
A LLV + + +G GD KL W G +S V
Sbjct: 161 NHLIASAAGLLVMEGLSALAERLLGQPALGLGDAKLAAMAGAWLGLGGLGISMALAVFSG 220
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
+ ++ T R + P+G I+ G +++ +
Sbjct: 221 AAVGTLGRWTGR----------------LGPRQPFPFGPFIAFGIWMTWLMGAPWWWQ 262
>gi|256826973|ref|YP_003150932.1| hypothetical protein Ccur_05290 [Cryptobacterium curtum DSM 15641]
gi|256583116|gb|ACU94250.1| hypothetical protein Ccur_05290 [Cryptobacterium curtum DSM 15641]
Length = 323
Score = 37.2 bits (85), Expect = 0.88, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
+GGGD+KL+ GW + S + +L ++ + V
Sbjct: 243 IGGGDIKLIACITFCCGWWSTL-SLVGVACLLALASAILRQLYSRLHAAKNRKPFSVYPR 301
Query: 141 FLMKNKIPYGIAISMGGLIS 160
L P+ +I++ +
Sbjct: 302 LLSHATFPFVPSIAVAFWVV 321
>gi|268608761|ref|ZP_06142488.1| prepilin peptidase [Ruminococcus flavefaciens FD-1]
Length = 298
Score = 37.2 bits (85), Expect = 0.91, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 30/161 (18%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVG 65
V S + + L+ A D + I V ++ + A + + + L
Sbjct: 126 VKSIITCLLMSLLIVVAFMDWDTMEISEAVVGIIFLLAIPLAVFTDDVPLKHRIIGALAV 185
Query: 66 LIVFIICFCFFA----------FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
+ F I F + GD L+ + G +S L +
Sbjct: 186 SVPFFIIGEISRPFIRKKFGEDFRAIELGDTILMFAAGAVLGTQAIIVSTLIGIFAAAIG 245
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
+ K+ +K +G +++G
Sbjct: 246 GGII-------------------KAVTKDSKFAFGPYLAIG 267
>gi|297543565|ref|YP_003675867.1| peptidase A24A prepilin type IV [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841340|gb|ADH59856.1| peptidase A24A prepilin type IV [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 147
Score = 37.2 bits (85), Expect = 0.91, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V + L + + +DL +P+ + + + + ++ L +
Sbjct: 3 VNEIKHIPIVMILSYLSYTDLKKREVPDFAVLAL----FIYSLFTCTSFKESILMAALVF 58
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
I+ +I F +GGGD+KLLT+ A + G S L+F F+ ++ ++
Sbjct: 59 ILLLIPSILFE-GSIGGGDIKLLTALAFFMGRDFSVLAFPMFILLVATLI 107
>gi|189017148|ref|YP_001909465.1| Predicted type IV prepilin-like protein specific leader peptidase
[Erwinia tasmaniensis Et1/99]
gi|188027085|emb|CAO94869.1| Predicted type IV prepilin-like protein specific leader peptidase
[Erwinia tasmaniensis Et1/99]
Length = 203
Score = 37.2 bits (85), Expect = 0.91, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 4/107 (3%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
AA D + +P+ + + L T D + + V +I ++
Sbjct: 70 LTFFIALFGSAAYIDYVTRWVPDILIFALSWIALSTVMPGEFDAAPVLVSAAVMVIPCLV 129
Query: 72 CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
+ GD+ LL + VW + + G
Sbjct: 130 VNVIAIMRCQRPALASGDIYLLPAIGVWLRPEWGAACLVTSFLLAGL 176
>gi|259505886|ref|ZP_05748788.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166560|gb|EEW51114.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 203
Score = 37.2 bits (85), Expect = 0.94, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 18/158 (11%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRV---SIVMLGSFLLTAFLLGMDYELIALHLLV 64
+ DL +P+R+ +++ L L + +G + LL
Sbjct: 55 ELIGLAAAAVGCTLLMVIDLAVCRLPDRLVAATLLALVLGFLASAAVGGTWNDWVRALLA 114
Query: 65 GLIVFIICFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
GL++ + F A +G GDVK V+ GW
Sbjct: 115 GLVLLLGYFALAFIAPAGLGLGDVKFAAVVGVFLGWFSW-------------QHVAIGTL 161
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ + N + + + + K IP+G + G +++
Sbjct: 162 LAFVLNVVVAVAVLLTRCGNRKTDIPFGPWMVAGAVLA 199
>gi|149199778|ref|ZP_01876809.1| prepilin peptidase [Lentisphaera araneosa HTCC2155]
gi|149137183|gb|EDM25605.1| prepilin peptidase [Lentisphaera araneosa HTCC2155]
Length = 384
Score = 37.2 bits (85), Expect = 0.95, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD 54
+ + + LI LV A+L+D+ + IP ++ L + + A
Sbjct: 114 LSQTLLALIATSILVAASLTDIETRTIPIQLVYFGLATAFILALAFPES 162
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
++GGGD+ L+T A + G + +S F ++++ +
Sbjct: 301 VIGGGDLSLITLCAAFVGIQGALVSLGFASLFG----MIYLMISKKEAKMT--------- 347
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ IP+ I++ + L+ + +
Sbjct: 348 ----QRAIPFAPFIAI---FVWSWFLLWPFYIEQI 375
>gi|324999309|ref|ZP_08120421.1| hypothetical protein PseP1_11111 [Pseudonocardia sp. P1]
Length = 212
Score = 37.2 bits (85), Expect = 0.95, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 28/86 (32%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ + V + +DL +PN +++ L + G L + V L
Sbjct: 69 LLAALTWLGVAGSATDLLRRRLPNALTLPALPLVVGALVPAGAAAVLRGMAGAVLLGAAY 128
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWF 96
+ MG GDVKL
Sbjct: 129 AAVHLVSPPAMGAGDVKLALPVGAAV 154
>gi|20091424|ref|NP_617499.1| hypothetical protein MA2598 [Methanosarcina acetivorans C2A]
gi|19916565|gb|AAM05979.1| predicted protein [Methanosarcina acetivorans C2A]
Length = 131
Score = 37.2 bits (85), Expect = 0.95, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
++ LV A +DL + NR +M + L + +++ ++F+I
Sbjct: 4 IILISLFLVLACYTDLRYRRVSNRSCFLMFVISVPFIVQL-----ISVRYVITVGLIFLI 58
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F F GGGD K L ++ F + +F +++ +L + R
Sbjct: 59 IFFAFKKGCFGGGDAKSLILISLLFPDPVLIIWIMFISSVIVIVLFLLKRVGR 111
>gi|145636571|ref|ZP_01792239.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
PittHH]
gi|145270396|gb|EDK10331.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
PittHH]
Length = 168
Score = 37.2 bits (85), Expect = 0.97, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 27/162 (16%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLV 64
+F+ + L + D + +I + +L L A +
Sbjct: 22 IFTVWIGLTLIILWTISYLDWYYQLISTTPCLWLLTLGLFGADNNFSLLTLSESIKSAAS 81
Query: 65 GLIVFIICFCF----FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
IVF + + G GD L + + + FL ++LG S+
Sbjct: 82 FFIVFYAIYWIAKCYYRKEAFGRGDYWLAMALGSFIHLE-TLPHFLLLASVLGICFSLI- 139
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
K IP+ +++ +I Y
Sbjct: 140 -------------------HKKKKEFIPFAPFMNLSAIIIYL 162
>gi|283769325|ref|ZP_06342224.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Bulleidia extructa W1219]
gi|283103982|gb|EFC05366.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Bulleidia extructa W1219]
Length = 156
Score = 37.2 bits (85), Expect = 0.99, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHL 62
+F + FL+ ++ D + +IPN + +++ + + + +
Sbjct: 2 SFIFLSFFLVFELFAAVISMIDFRARIIPNELVMILSAIGFIYSLVTKGLQGLGVALIAP 61
Query: 63 LVGLIVFIICFCFF-----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+V I+F+I F +MG GD+KL+ + ++ G F FL +A
Sbjct: 62 VVLFILFMIIMVGFQKLTGKQFVMGAGDLKLMMAASLVVGNLAGFQIFLLGMAGFMMAYI 121
Query: 118 VFILTVRMITNHIPIFGM 135
+ L ++ IT +
Sbjct: 122 LIGLGLKKITLYSLYPMA 139
>gi|46200018|ref|YP_005685.1| type 4 prepilin peptidase pilD [Thermus thermophilus HB27]
gi|46197645|gb|AAS82058.1| type 4 prepilin peptidase pilD [Thermus thermophilus HB27]
Length = 354
Score = 37.2 bits (85), Expect = 0.99, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 24/95 (25%)
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MG GDVKLL + W G FL +F +
Sbjct: 281 AMGYGDVKLLGALGAWLGPYAFLALFL------------------------GVFAGALLG 316
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
L + K+P+G +++GG++++ A + L
Sbjct: 317 LLLRQRKLPFGPYLALGGVVAFFFGEALWGAYLRL 351
>gi|260888937|ref|ZP_05900200.1| putative leader peptidase / N-methyltransferase [Leptotrichia
hofstadii F0254]
gi|260861384|gb|EEX75884.1| putative leader peptidase / N-methyltransferase [Leptotrichia
hofstadii F0254]
Length = 148
Score = 37.2 bits (85), Expect = 0.99, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 19/157 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--V 64
+ ++ DL +IP +++L L++A +
Sbjct: 1 MNIVFEIVKYCIFFRIIWIDLKKRIIPEESFVILLALGLISAIQNINLEGYYLGICAYSM 60
Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSVFILT 122
+IV I +F ++G GDVKL+ G+ ++F + I GI++ L
Sbjct: 61 PMIVLYILEDYFGKTLIGFGDVKLMMGIGSILGYFGVEKIINFYMILYIFSGIVAFLFLF 120
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
++ + IP+ I + +I
Sbjct: 121 LKK---------------WKKYEYIPFAPFIIISYVI 142
>gi|323970465|gb|EGB65726.1| type IV leader peptidase [Escherichia coli TA007]
Length = 216
Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 7/132 (5%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
I L L+D+ +P ++ ++ L+ + +
Sbjct: 66 LLFLSILTGLLTVMTLTDIAVCRLPRIFTLSLIILGAAFR-YSQDSLAHALLNASLWFGM 124
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ F +G GDV L+ A+W + + A G L + I R
Sbjct: 125 IYLLRRIFLAAKGTEALGLGDVFLIAGIAMWTQPQHTP--LIITAAASGAFLFILIFCRR 182
Query: 125 MITNHIPIFGMF 136
+P
Sbjct: 183 RRQLALPFAPFL 194
>gi|118473379|ref|YP_888151.1| polyprenol-monophosphomannose synthase Ppm1 [Mycobacterium
smegmatis str. MC2 155]
gi|118174666|gb|ABK75562.1| polyprenol-monophosphomannose synthase Ppm1 [Mycobacterium
smegmatis str. MC2 155]
Length = 615
Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 11/121 (9%)
Query: 41 LGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF-----AFNIMGGGDVKLLTSTAVW 95
L + + L + + I + ++ + G G + L
Sbjct: 91 LSAAIGGGLALWLSFPPIGWWFTAFPGLALLGWVLTRTATTKAGGFGYGVLFGLAFYVPL 150
Query: 96 FGWTPSF------LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
W L+ F ++ G+ + + V + F + K+ P+
Sbjct: 151 LPWISGLVGAVPWLALAFAESLFCGLFGLGAVVVVRLPGWPLWFATLWVAAEWAKSTFPF 210
Query: 150 G 150
G
Sbjct: 211 G 211
>gi|115444429|ref|NP_001045994.1| Os02g0165000 [Oryza sativa Japonica Group]
gi|49388056|dbj|BAD25170.1| zinc finger (C3HC4-type RING finger) protein-like [Oryza sativa
Japonica Group]
gi|49388413|dbj|BAD25546.1| zinc finger (C3HC4-type RING finger) protein-like [Oryza sativa
Japonica Group]
gi|113535525|dbj|BAF07908.1| Os02g0165000 [Oryza sativa Japonica Group]
gi|215697496|dbj|BAG91490.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218190127|gb|EEC72554.1| hypothetical protein OsI_05980 [Oryza sativa Indica Group]
gi|222622238|gb|EEE56370.1| hypothetical protein OsJ_05507 [Oryza sativa Japonica Group]
Length = 487
Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 8/106 (7%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
MV + + L+ A D+ S + + L + M +
Sbjct: 336 MVSTLAYFCFLEQLLVA---DMKSRALAISLPFSCLLGIFSSILASTMATDNYLWAFATF 392
Query: 66 LIVFIICF--CFFAFNIMGGGDVKLLT---STAVWFGWTPSFLSFL 106
F+I F F+ MG LL + + +L
Sbjct: 393 QFAFLILFAHIFYNLLKMGAVLAILLASFTGFGIAISLNAMLIEYL 438
>gi|167836798|ref|ZP_02463681.1| peptidase, putative [Burkholderia thailandensis MSMB43]
Length = 104
Score = 37.2 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Query: 38 IVMLGSFLLTAFLLGMDYELIALHLLVGL-IVFIICFCFFAFNIMGGGDVKLLTSTAVWF 96
+ ++ F +E LVG + + F FFA +MG DVK+ W
Sbjct: 2 FAGFAAVIIFTFCRQNPFETTLTGALVGATVGLVSLFPFFALRVMGAADVKVFAVLGAWC 61
Query: 97 GWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
G ++ G +L R + G
Sbjct: 62 GLPALPRLWIVASVAAGIHALGLMLVTRTPLGSLGRNGAPA 102
>gi|315650389|ref|ZP_07903460.1| A24 family peptidase [Eubacterium saburreum DSM 3986]
gi|315487316|gb|EFU77627.1| A24 family peptidase [Eubacterium saburreum DSM 3986]
Length = 159
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V+ I L+F ++D+F IPN + ++ G+ + L+ +I
Sbjct: 1 MVYYIVGSLLLFTTITDIFWRRIPNILILIYFGAGIFIL---------HLDFLIRFIISL 51
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
I F+ G GD+KL + + G + + + G V+++
Sbjct: 52 FIFSAFYRIRFFGAGDIKLFSLIIGFLGIYDGINMSVISLVLAGVGSLVYLIF 104
>gi|220921784|ref|YP_002497085.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
2060]
gi|219946390|gb|ACL56782.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
2060]
Length = 192
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 16/166 (9%), Positives = 44/166 (26%), Gaps = 22/166 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + L + D+ + I + + + ++ + L
Sbjct: 40 LSLMLGLALAVAVAQIVWQDIATLTIADGTVVAVGLVGIVARVTAQEPAAAALPLAVDAL 99
Query: 67 IVFIICFCFFAF-------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ + + +G GDVKL + + G +
Sbjct: 100 VCGGSFWLIREVHYRRRGHDGIGMGDVKLAAAGGLVAGLDG---------------FAWA 144
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+L + + P+ +++P+G + L +
Sbjct: 145 VLLASLAGLALVGASRLRPRPLGTADRLPFGAFLGPALLAVFAWGP 190
>gi|219848737|ref|YP_002463170.1| peptidase A24A domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542996|gb|ACL24734.1| peptidase A24A domain protein [Chloroflexus aggregans DSM 9485]
Length = 246
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 20/163 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
A L+ + D I V + + + G + + L L+G + F
Sbjct: 96 AYLAFVGAVLIVTGVVDWLYRWIYTFVILGGALIAFIWGSIAGAGWRELLLGSLIGGVGF 155
Query: 70 IICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ + G GDV L G + ++ V + G + + +L
Sbjct: 156 LFLYLLALILFPSKSAPFGLGDVYLAIFIGAALGLRHLGPALIYGVFMAGIVAAGILLAR 215
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
R+ +PYG + +G L+
Sbjct: 216 RLGRATP--------------EYLPYGAYLCLGVLLYVAFGGY 244
>gi|301154755|emb|CBW14218.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
Length = 225
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 6/112 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ I L + D +I +++ L + L E
Sbjct: 84 LFTLWLTITLSLLFVISWLDWHYQLISPTPCLLLFFLGLFGSQQEFSVLTLSQSLESAVS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
V I++ + F+ +G GD L + L +
Sbjct: 144 FFGVFYIIYHLSKWFYKKEALGRGDYWLALGIGAYLTIAHLPLFLFIACLLG 195
>gi|282858106|ref|ZP_06267301.1| peptidase, A24 (type IV prepilin peptidase) family [Pyramidobacter
piscolens W5455]
gi|282584028|gb|EFB89401.1| peptidase, A24 (type IV prepilin peptidase) family [Pyramidobacter
piscolens W5455]
Length = 219
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
AL+DL I +R L + L + L + V + M
Sbjct: 77 ALTDLSDGYIYDRAVAASLAAALALRLPYGFLPGAKEILLGMAAGTVPLALIVLVTRGGM 136
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
G GD L+ GW + L+ L+ + GG+ ++ +L + +
Sbjct: 137 GWGDAFLMAGLGALLGWKLTALT-LYGGIVSGGVAALVLLLAKRVG-------------- 181
Query: 142 LMKNKIPYGIAISMGGLISYPDSYLF 167
K+ +P + +G L + +
Sbjct: 182 -RKDALPLAPFLLIGLLFALWAAPWI 206
>gi|41407179|ref|NP_960015.1| hypothetical protein MAP1081 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41395530|gb|AAS03398.1| hypothetical protein MAP_1081 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 142
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 3/132 (2%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M +A + + L + D+ +PN +++ + L A L G +A +
Sbjct: 1 MRIAAAGAVLTW-LAVLSCYDIRQHRLPNALTLTGAAAILAAAGLAGRGPSALAGAAALA 59
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
I ++ A MG GDVKL G + FL +A + V +L
Sbjct: 60 AIYLLVHAV--APGGMGAGDVKLALGVGALTGCGGVGVWFLAALAAPLLTVLVGVLARVR 117
Query: 126 ITNHIPIFGMFV 137
G +
Sbjct: 118 RAGPTVPHGPSL 129
>gi|332798618|ref|YP_004460117.1| peptidase A24A prepilin type IV [Tepidanaerobacter sp. Re1]
gi|332696353|gb|AEE90810.1| peptidase A24A prepilin type IV [Tepidanaerobacter sp. Re1]
Length = 223
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG------MDYELIAL 60
+ + + + +A+ D +I N + + +L + ++ F+ G +
Sbjct: 71 TSAVLTCVFITVAIVSAIIDYHIHIIANEIVLFLLMTGIVYRFIDGGITSLIGALWAFLI 130
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ + + + +G GD+KL+ + AV G+ F A + V +
Sbjct: 131 TIGIFGGAAVFTYWRKGTIGIGAGDLKLVMAIAVTVGYPGVFYFLAGIAAAIILYCFVGL 190
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
+ N + FL PY
Sbjct: 191 KFRMLTWNSSFPMCAHIMIGFLTGLFYPY 219
>gi|167620227|ref|ZP_02388858.1| peptidase, putative [Burkholderia thailandensis Bt4]
gi|257139292|ref|ZP_05587554.1| peptidase, putative [Burkholderia thailandensis E264]
Length = 113
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+ L+ G + + F FFA +MG DVK+ W G P+ ++ GI +
Sbjct: 1 MVGALIGGAVGLVSLFPFFALRLMGAADVKVFAVLGAWCGL-PALPRLWIVASVAAGIHA 59
Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
+ +L + + + PY
Sbjct: 60 LGLLLLTRTPLGSLGRNGAPAFALGARRSAPY 91
>gi|326802955|ref|YP_004320773.1| bacterial peptidase A24, N-terminal domain protein [Aerococcus
urinae ACS-120-V-Col10a]
gi|326650962|gb|AEA01145.1| bacterial peptidase A24, N-terminal domain protein [Aerococcus
urinae ACS-120-V-Col10a]
Length = 237
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 1/138 (0%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
++ + L A++DL +P+R ++ S + L ++L + +
Sbjct: 95 QASYLVTLHSLLFIMAMTDLEEMWVPDRFQVLFFLSLIAYHGLFTPSSHYLSLLVHLLAC 154
Query: 68 VFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ + +GG DVK+ S A++F L + L V
Sbjct: 155 GLVLALLVYLIPGSLGGADVKIFLSLALFFPPLSYSLFICLASGLALLYLLVAAQLKERS 214
Query: 127 TNHIPIFGMFVPKSFLMK 144
F + +F +
Sbjct: 215 LKDPLAFFPLIWLAFDLT 232
>gi|148259905|ref|YP_001234032.1| peptidase A24A domain-containing protein [Acidiphilium cryptum
JF-5]
gi|146401586|gb|ABQ30113.1| peptidase A24A domain protein [Acidiphilium cryptum JF-5]
Length = 252
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L + ++ + +G GD KLL S A W + + + + +
Sbjct: 161 YLGFTGLRLLWRRLRGIDALGAGDAKLLASGAAWLPPAALPWAVVIAGLAGLAGFAAWAV 220
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K+P+G A++ G L+
Sbjct: 221 LRAEAGGAPLA-----------RQKLPFGPALAFGLLVV 248
>gi|296139688|ref|YP_003646931.1| peptidase A24A prepilin type IV [Tsukamurella paurometabola DSM
20162]
gi|296027822|gb|ADG78592.1| peptidase A24A prepilin type IV [Tsukamurella paurometabola DSM
20162]
Length = 142
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 2/110 (1%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
D+ +PN +++ ++ A L + AL + +
Sbjct: 10 VAAWCAALCWFDVRQRRLPNALTVPAAACGVIAALTLALCGAPSALAGMGLWGGTYL--V 67
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F +G GDVKL + G + L V I + + VR
Sbjct: 68 VFLLGGVGAGDVKLAPALGALVGGLAGASAVLLAVLGAQAITVAWSVVVR 117
>gi|298346849|ref|YP_003719536.1| hypothetical protein HMPREF0573_11723 [Mobiluncus curtisii ATCC
43063]
gi|315656693|ref|ZP_07909580.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|298236910|gb|ADI68042.1| hypothetical protein HMPREF0573_11723 [Mobiluncus curtisii ATCC
43063]
gi|315492648|gb|EFU82252.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 227
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 5/142 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELI 58
M + ++ + + L+D ++PNR+ + L ++ +
Sbjct: 67 MCCTHLLLTLPVYLSTAPFCALFLTDARYRLLPNRLLGLGAAMLLPLLSIVAIILHDPEA 126
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG---WTPSFLSFLFFVAILGGI 115
+ + + F +G GDVKL + W G W + L + G
Sbjct: 127 LARVWGLSLAMGLVLAFATHFGLGMGDVKLGALLSAWLGLYDWFAPLVMLLLASFLAGVF 186
Query: 116 LSVFILTVRMITNHIPIFGMFV 137
+ I++ ++ ++ FG ++
Sbjct: 187 ALILIISKKLDLDNDIAFGPWL 208
>gi|254463466|ref|ZP_05076882.1| peptidase A24A, prepilin type IV [Rhodobacterales bacterium
HTCC2083]
gi|206680055|gb|EDZ44542.1| peptidase A24A, prepilin type IV [Rhodobacteraceae bacterium
HTCC2083]
Length = 138
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 27 LFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDV 86
+ + IPN + M G +++ L + + + L+V +I F A ++G
Sbjct: 1 MRAMRIPNWCVLAMFGVYVVIGI-LTLPFSVYLWGFFGLLVVLVIGFLMNAVGMIGA--- 56
Query: 87 KLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNK 146
A F F +A+ + LT R+ S+ +
Sbjct: 57 -GDAKFAAAAAPFIHSSDFRFVLALFAANILAAFLTHRLTAKTKMTKLAPKWDSWERTWE 115
Query: 147 IPYGIAISMGGLISYP 162
P G+++ G L Y
Sbjct: 116 FPMGLSLG-GTLAIYL 130
>gi|167829711|ref|ZP_02461182.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 9]
Length = 84
Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 27/75 (36%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L V AA DL S IPNR+ + L L+ L + A L
Sbjct: 10 IPLCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAG 69
Query: 71 ICFCFFAFNIMGGGD 85
+ F+ M GD
Sbjct: 70 LLLPFYLVRGMAAGD 84
>gi|330953035|gb|EGH53295.1| peptidase A24A, prepilin type IV [Pseudomonas syringae Cit 7]
Length = 156
Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 8/153 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--IALHLLVGLIVF 69
A D I N +++ ++ L GM + LL + +
Sbjct: 3 LFFLLIWFAICAEQDARCKQISNGLTLGAAALAIIYLALTGMTWLGSPALEALLAVTLAW 62
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +A +G DVKL+T+ A+ +F+ G ++ +++ + H
Sbjct: 63 ALTLPGYALGKLGAADVKLMTALALASNSAYLLCTFIGA----GLTMAAWLIVGKSSWPH 118
Query: 130 IPIFGMFVPKSFLMKNK--IPYGIAISMGGLIS 160
+ + P+ + G L+S
Sbjct: 119 TQQWVAQRYRYMNPGTPDKYPFSPFLFAGLLLS 151
>gi|325968741|ref|YP_004244933.1| hypothetical protein VMUT_1226 [Vulcanisaeta moutnovskia 768-28]
gi|323707944|gb|ADY01431.1| hypothetical protein VMUT_1226 [Vulcanisaeta moutnovskia 768-28]
Length = 253
Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 35/97 (36%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + ++ + ++ + A++ DL + I + I+ + + L
Sbjct: 1 MINAYLLLTVDYVFAIIIQIIASIQDLMTREISDWTWIIGSIICIPLGLYSVFVLGQLLL 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
+++ +I F + MGG D K + +
Sbjct: 61 YIIGVVIGSAFAFMAYWLRAMGGADSKSIAFISASIP 97
>gi|150388960|ref|YP_001319009.1| heavy metal translocating P-type ATPase [Alkaliphilus
metalliredigens QYMF]
gi|149948822|gb|ABR47350.1| heavy metal translocating P-type ATPase [Alkaliphilus
metalliredigens QYMF]
Length = 639
Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ +FLI + + D+ + I N I ++ L+
Sbjct: 15 TILFLILSAISLLISFFDIGNFKI-NAAWIAIILCGFPIIKGAVEGLIQNFDIKADVLVS 73
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWF 96
+ F G+V L+ +
Sbjct: 74 IALVAAVFIGENFAAGEVALIMALGALL 101
>gi|329767472|ref|ZP_08258996.1| hypothetical protein HMPREF0428_00693 [Gemella haemolysans M341]
gi|328835920|gb|EGF85636.1| hypothetical protein HMPREF0428_00693 [Gemella haemolysans M341]
Length = 239
Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 48/144 (33%), Gaps = 19/144 (13%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D+ S + + + +++ + ++ + + + LI+ F +G GD
Sbjct: 115 DIKSFEVNDELFYLLIILNFSSIYIHYYLFNFLDF---IYLIIIFHILYIFTRGGLGYGD 171
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
+K+ A+ L F + G +++++ ++ + K
Sbjct: 172 IKVFCVLALNLNLFEGVY-LLIFTFLYAGFFAIWLIILKKVK---------------RKT 215
Query: 146 KIPYGIAISMGGLISYPDSYLFKV 169
K+P I++ L
Sbjct: 216 KLPLVPFIALSYLTIILIREGLLW 239
>gi|55980238|ref|YP_143535.1| type IV prepilin peptidase PilD [Thermus thermophilus HB8]
gi|55771651|dbj|BAD70092.1| type IV prepilin peptidase (PilD) [Thermus thermophilus HB8]
Length = 355
Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 24/95 (25%)
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
MG GDVKLL + W G FL +F +
Sbjct: 282 AMGYGDVKLLGALGAWLGPYAFLALFL------------------------GVFAGALLG 317
Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
L + K+P+G +++GG++++ A + L
Sbjct: 318 LLLRQRKLPFGPYLALGGVVAFFFGEALWGAYLRL 352
>gi|33593021|ref|NP_880665.1| hypothetical protein BP1992 [Bordetella pertussis Tohama I]
gi|33563396|emb|CAE42272.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|332382433|gb|AEE67280.1| hypothetical protein BPTD_1962 [Bordetella pertussis CS]
Length = 174
Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL---- 57
E+ + + + + DL +PNR+ I + +
Sbjct: 1 MENLLREHVWWAVYVAFNLLVVFYDLRVRRVPNRLLIAAALAQCAWLAWHAWGVQATPAA 60
Query: 58 ---IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
+G ++ + + +MG GDVK L + G P L +
Sbjct: 61 GARGWSDAGLGFVLGMAFVMLWRMRLMGAGDVKYLAVLGLAIGAWPWLLVLVLAG 115
>gi|262066834|ref|ZP_06026446.1| integral membrane protein [Fusobacterium periodonticum ATCC 33693]
gi|291379446|gb|EFE86964.1| integral membrane protein [Fusobacterium periodonticum ATCC 33693]
Length = 160
Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 6/154 (3%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + L+F D+ IPN ++ +L + + ++ I V I+
Sbjct: 4 ILIIFLYIALIFIMYIDINKKYIPNVLNFSILILSVFIRGISEIENFFIGAACYVLPILI 63
Query: 70 IICFC--FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ + G GD+KL+ + F+ I L VF+ I
Sbjct: 64 FYGYVSDILKREVFGFGDIKLIIALGGLL----YLSEINIFLQIYIFYLLVFLFATLYII 119
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+I I+ + +I + I + I Y
Sbjct: 120 FYICIYFCRNRALKIRGVEIAFAPYICITFFIIY 153
>gi|302185173|ref|ZP_07261846.1| peptidase A24A, prepilin type IV [Pseudomonas syringae pv. syringae
642]
Length = 156
Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 4/151 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI--ALHLLVGLIVF 69
A D I N +++ + GM + LL +
Sbjct: 3 LFFLLIWFAICAEQDARCKQISNELTLGAAALAMTYLAFTGMTWLGSPALEALLAATLAL 62
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +A +G GDVKL+T+ A+ +F+ + L V
Sbjct: 63 ALTLPGYALGKLGAGDVKLMTALALASNSAYLLCTFIGAGVAMAVWLIVGKSAWPQARQW 122
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
++ + K+ P+ + G L+S
Sbjct: 123 AAQRYRYMNPAAPDKH--PFSPFLFAGLLLS 151
>gi|269216190|ref|ZP_06160044.1| leader peptidase PilD [Slackia exigua ATCC 700122]
gi|269130449|gb|EEZ61527.1| leader peptidase PilD [Slackia exigua ATCC 700122]
Length = 234
Score = 36.8 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 39/179 (21%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL----TAFLLGMDYELIALHL 62
+ +A + LV D+ S ++PN + + +++L A G D I
Sbjct: 72 LETAGCSVLACALVLIVWHDVRSRVVPNALVGAIACAWILHAGACALRSGSDAAGIDARF 131
Query: 63 LVGLIVFIICF-----------------CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
GL+VF + F ++GGGDVKLL + +W G + +
Sbjct: 132 APGLLVFALTGFLLLGGLPLLCAILLERVFDLTEVLGGGDVKLLAALGLWLGPSSGLVML 191
Query: 106 LFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
L + + V P+ ++ +
Sbjct: 192 LSACMLACTVQLVRRFVRGCAP------------------PFPFAPYLACASALVLIGG 232
>gi|167582066|ref|ZP_02374940.1| peptidase, putative [Burkholderia thailandensis TXDOH]
Length = 113
Score = 36.8 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ G + + F FFA +MG DVK+ W G P+ ++ GI ++ +
Sbjct: 4 ALIGGAVGLVSLFPFFALRLMGAADVKVFAVLGAWCGL-PALPRLWIVASVAAGIHALGL 62
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
L + + + PY
Sbjct: 63 LLLTRTPLGSLGRNGAPAFALGARRSAPY 91
>gi|315282470|ref|ZP_07870877.1| type IV leader peptidase family protein [Listeria marthii FSL
S4-120]
gi|313613888|gb|EFR87625.1| type IV leader peptidase family protein [Listeria marthii FSL
S4-120]
Length = 155
Score = 36.8 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
++ I + L F ++D+F +PN + ++ + L L + + ++ + ++
Sbjct: 18 IYCIIYYFLAFFFVTDIFYLYVPNSILLLFVCILFLLFILFNQPWMDLIYSGVMSSLFYL 77
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+ F F +G GD+K+L + + G+ + F + + IL
Sbjct: 78 LFFSIFRK-GIGLGDIKILIILSTFLGFKVGYYIFFLAIILGTIIL 122
>gi|260495326|ref|ZP_05815453.1| integral membrane protein [Fusobacterium sp. 3_1_33]
gi|260197104|gb|EEW94624.1| integral membrane protein [Fusobacterium sp. 3_1_33]
Length = 157
Score = 36.8 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 6/142 (4%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFN 79
D+ IPN ++ +L + + +D I I+ +
Sbjct: 16 VMYIDINKKYIPNILNFSILVLSIFICGIDKIDSFFIGASCYTLPILIFYGYISDVLKKE 75
Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
+ G GD+KL+T + FL + S+ L + + V
Sbjct: 76 VFGFGDIKLITPLGGLL-YQGEINIFLQIYIFYLLVFSLATLYIIIYIVISYCRNKSVK- 133
Query: 140 SFLMKNKIPYGIAISMGGLISY 161
+ ++ + I + +I Y
Sbjct: 134 --IRGVELAFAPYICLVFIIIY 153
>gi|304389446|ref|ZP_07371409.1| prepilin peptidase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|304327256|gb|EFL94491.1| prepilin peptidase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
Length = 227
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 5/142 (3%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELI 58
M + ++ + + L+D ++PNR+ + L +L +
Sbjct: 67 MCCTHLLLTLPVYLSTAPFCALFLTDARYRLLPNRLLGLGAAMLLPLLSILAIILHDPEA 126
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG---WTPSFLSFLFFVAILGGI 115
+ + + F +G GDVKL + W G W + L + G
Sbjct: 127 LARVWGLSLAMGLVLAFATHFGLGMGDVKLGALLSAWLGLYDWFAPLVMLLLASFLAGVF 186
Query: 116 LSVFILTVRMITNHIPIFGMFV 137
+ I++ ++ ++ FG ++
Sbjct: 187 ALILIISKKLDLDNDIAFGPWL 208
>gi|212224898|ref|YP_002308134.1| V-type ATP synthase subunit I [Thermococcus onnurineus NA1]
gi|212009855|gb|ACJ17237.1| archaeal/vacuolar-type H+-ATPase, subunit I [Thermococcus
onnurineus NA1]
Length = 659
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 32 IPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTS 91
I +++S +++ ++ LGM + L G +F F G + +L +
Sbjct: 491 ILDQLSWMLIILGVVF-LALGMTGKEALT--LPGKALFGAGLVLFTIGEFRNGALAVLLT 547
Query: 92 TAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGI 151
+ +FG+ S+LS+ +A+ + ++ ++ + +P GI
Sbjct: 548 ISDFFGFVGSWLSYARLMALALATAGIAMVINILVQMVWGVSI----------GPVPIGI 597
Query: 152 AISMGGLISYPDSYLFKVALMGLSA 176
I GLI + LF VA+ L A
Sbjct: 598 VI---GLILFVGGQLFSVAINALGA 619
>gi|328958736|ref|YP_004376122.1| membrane protease and transmethylase [Carnobacterium sp. 17-4]
gi|328675060|gb|AEB31106.1| membrane protease and transmethylase [Carnobacterium sp. 17-4]
Length = 244
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 16/154 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ +SD++ ++PN + + L ++ + +G
Sbjct: 101 EGLFITGIVAFSLIFIVSDIYYQLLPNNLMLPFFLWVFLGRLVIHPYPISFYIFSGLGFF 160
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
F F + +GGGDVKLL + G+ S ++ LF + + + R+
Sbjct: 161 SFFYLFYQLSSTPIGGGDVKLLGIIGLLLGYHSSLVALLFASLSAILVCLPLMFSKRISY 220
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
NH IP+ I +G I+Y
Sbjct: 221 NH----------------PIPFAPFIFLGTFIAY 238
>gi|240173212|ref|ZP_04751870.1| polyprenol-monophosphomannose synthase, Ppm1A [Mycobacterium
kansasii ATCC 12478]
Length = 663
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 9/125 (7%)
Query: 35 RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA---FNIMGGGDVKLLTS 91
R+ +++ +V + + A +G G + L
Sbjct: 81 RLPRLLVCVGAGLLLYASFPPVNWWWAAIVAVALLTWVLMHRATTPVGALGYGFLFGLAF 140
Query: 92 TAVWFGWTPSF------LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
W S L A+ G+ + + VR + F + +K+
Sbjct: 141 YVPLLPWIGSLVGPMPWLVLATVSALFPGLFGLLAVVVRGLPGWPIWFAVLWAAQEWLKS 200
Query: 146 KIPYG 150
+P+G
Sbjct: 201 LMPFG 205
>gi|239980160|ref|ZP_04702684.1| hypothetical protein SalbJ_12015 [Streptomyces albus J1074]
Length = 238
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 7/136 (5%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
AV+L+ + A+ DL +P+ +++ + L + L
Sbjct: 89 ELAVWLLAAPVGLLLAVVDLRVMRLPDPLTLPLAAGVLALLGVAAALPGAAGSWLGALYG 148
Query: 68 VFI-----ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ + GDVKL + GW FL F ++G + +F+
Sbjct: 149 LLALGGGAFVLFLINPDGFAFGDVKLCLALGAALGWYGLGAVFLGAFAGLLVGAVHGLFL 208
Query: 121 LTVRMITNHIPIFGMF 136
+ +
Sbjct: 209 VLAKGAGRRTAFAFGP 224
>gi|27381134|ref|NP_772663.1| prepilin peptidase [Bradyrhizobium japonicum USDA 110]
gi|27354301|dbj|BAC51288.1| blr6023 [Bradyrhizobium japonicum USDA 110]
Length = 198
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 46/170 (27%), Gaps = 23/170 (13%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL--TAFLLGMDYELIALHLLVGLIVFII 71
++ A D +IPN ++ LL AF+ + E + L V +
Sbjct: 41 FLAALMLAIATHDARHYLIPNELTGTAFALALLRAGAFVPDVGLEALIWPLARAAAVALP 100
Query: 72 CFCFFA-------FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
+ +G GDVKL W + G + R
Sbjct: 101 LLLLMVLYRRWRGRDGLGLGDVKLAAVCGAWLDLATVAAVIELAALLAIGAYAANAALQR 160
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+P+G+ ++ I + + L G
Sbjct: 161 RPLRATAF--------------LPFGLFLAPAIWIGWLGETWYANWLGGW 196
>gi|328951619|ref|YP_004368954.1| Prepilin peptidase [Marinithermus hydrothermalis DSM 14884]
gi|328451943|gb|AEB12844.1| Prepilin peptidase [Marinithermus hydrothermalis DSM 14884]
Length = 362
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 23/94 (24%)
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
MG GDVKL W G+ P F+ LF + G +L V +
Sbjct: 288 MGFGDVKLAGMLGAWLGFWP-FVVGLFLAVLAGAVLGVLL-------------------- 326
Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ ++P+G +++GG + A +G
Sbjct: 327 --RQRRLPFGPYLALGGAAALFWGEALIRAYLGW 358
>gi|317124719|ref|YP_004098831.1| peptidase A24A prepilin type IV [Intrasporangium calvum DSM 43043]
gi|315588807|gb|ADU48104.1| peptidase A24A prepilin type IV [Intrasporangium calvum DSM 43043]
Length = 233
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 25/164 (15%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLLVG 65
+ +L V A D +P+ ++ ML L A L D+ L+ G
Sbjct: 78 APAYLGFATVAVALAWVDADVHRLPHGLTRPAYPMLIGQLALASLASGDWTAFRRALIAG 137
Query: 66 LIVFIICFCFFA-----FNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSV 118
+++ + F + G GDV L + G+ ++ + + +L G+ +
Sbjct: 138 AVLWAVYFVLALLAALLRSGFGLGDVTLAGLIGLATGYVSAWGPVIATYAAFLLSGVYGL 197
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ R K+ I +G + +G L++
Sbjct: 198 GRIIARRG---------------SRKDHIAFGPWMLVGALVALL 226
>gi|198284416|ref|YP_002220737.1| peptidase A24A prepilin type IV [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|198248937|gb|ACH84530.1| peptidase A24A prepilin type IV [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 152
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 2/105 (1%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
V+ A D +PNR+++ L L L G + +
Sbjct: 8 VALWAVWGAQGDYRRQRLPNRLTLSALALGLAVLPLTGRCLLGAPWSAALLGVAAAFLAL 67
Query: 75 F--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+ + ++ GDVK + G F +L I +++
Sbjct: 68 LPAYVWRLVAAGDVKFFMAMGALGGVDVLFPIYLAAGVITLALVA 112
>gi|330798723|ref|XP_003287400.1| hypothetical protein DICPUDRAFT_151484 [Dictyostelium purpureum]
gi|325082605|gb|EGC36082.1| hypothetical protein DICPUDRAFT_151484 [Dictyostelium purpureum]
Length = 1387
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 13/99 (13%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
+ L C+V +D+ + IP R M+ F++ + GM + + + + +
Sbjct: 168 LALFLASCIVLIFENDIRT--IPGR----MILLFVIISISSGMTFLPTIISSGILGLFYF 221
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
+ F + +K + S++ +
Sbjct: 222 LYFILYTK-------IKGKAMVLISLVLLVSWIILMLIS 253
>gi|317133747|ref|YP_004089658.1| peptidase A24A prepilin type IV [Ruminococcus albus 7]
gi|315450209|gb|ADU23772.1| peptidase A24A prepilin type IV [Ruminococcus albus 7]
Length = 146
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 4/138 (2%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
++ A+++D+ IP + + +T + L ++G I F I
Sbjct: 1 MLIAMIIASITDIKKKEIP-IFLFPLFTTIFITINHAVIHPIDSLLGFVIGAISFSILAW 59
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
F+ GGGD+ +++ +G + ++ + + +
Sbjct: 60 KFSG---GGGDIIMMSCIGAAYGTKILSHIIIISSIMILVYYIIMKIQKKTKRTVPYAPF 116
Query: 135 MFVPKSFLMKNKIPYGIA 152
+ + FL+ I YGI
Sbjct: 117 VTISFIFLLLGGIFYGIY 134
>gi|184201408|ref|YP_001855615.1| A24A family peptidase [Kocuria rhizophila DC2201]
gi|183581638|dbj|BAG30109.1| putative A24A family peptidase [Kocuria rhizophila DC2201]
Length = 179
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 18/155 (11%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS-----FLLTAFLLGMDYELIALHLL 63
+ L+ V+ A +D+ +P V + D L L
Sbjct: 32 ALAVLVLACSGVWLAATDIREHRLPGTVVRPLYPVTALLLGAAALLAHDSDRLWWMLWGL 91
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
V + + MG GDV+L + G++ + L A +
Sbjct: 92 VIMGGLFLVLRLLHPAGMGLGDVRLAGVLGILTGFSSVTHTVLALAATFVLAGLFCAVL- 150
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ ++ +++IP G + +G L
Sbjct: 151 ------------LLARAADARSRIPLGPFMIVGSL 173
>gi|169837969|ref|ZP_02871157.1| hypothetical protein cdivTM_12889 [candidate division TM7
single-cell isolate TM7a]
Length = 138
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--VGLIVFIICFCFFAFN 79
D+ +IP +++++ L+TA + + +IV I +F
Sbjct: 6 IIWVDVKKRIIPEESAVILIILGLITAVQNDNLEKYYLGICAYSMPMIVLYILEDYFGKM 65
Query: 80 IMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
++G GDVKL+ G+ L+F + I GI++ L ++
Sbjct: 66 LIGFGDVKLMMGIGGLLGYFEIEKVLNFYMILYIFSGIIAFLFLFLKK------------ 113
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
+ IP+ I + +I
Sbjct: 114 ---WKKYEYIPFAPFIVVSYVI 132
>gi|134298822|ref|YP_001112318.1| hypothetical protein Dred_0958 [Desulfotomaculum reducens MI-1]
gi|134051522|gb|ABO49493.1| hypothetical protein Dred_0958 [Desulfotomaculum reducens MI-1]
Length = 156
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 15/154 (9%)
Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM-------- 81
+IP V+ + + + + + L L I F +
Sbjct: 1 MLIPKWVTTTLFITGVGIHSYK-LGFSGAINSLAGALSFAIFVFILCRLPGLINPNAIKR 59
Query: 82 -GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFGMFVPK 139
GGGD KL W G ++ + + I V ++L+++ I + K
Sbjct: 60 LGGGDYKLALGCGAWVGQENVWILMAIYTYLYALIKIVQYLLSIKRSGGRIIGNLVADLK 119
Query: 140 SFLMKNKIP----YGIAISMGGLISYPDSYLFKV 169
+ + P + ++ L++ +
Sbjct: 120 AEVYGYGTPHREAFAPYLAAPFLLTMYALEFYNW 153
>gi|313634452|gb|EFS01028.1| sulfatase family protein [Listeria seeligeri FSL N1-067]
Length = 617
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMI---PNRVSIVM------LGSFLLTAFLLG 52
M+ + LI + L+ I PN +++ M L L+ F
Sbjct: 1 MPQSMLERGIQLILFYFLLIVGKFTFAYFQIFKTPNFLALGMDLLFIVLILGLIHLFAPV 60
Query: 53 MDYELIALHLLVGLIVFIICFCFFAF 78
+ + + + V ++ +A
Sbjct: 61 RSHVYWYAGMSLFVGVLMLICVLYAR 86
>gi|311113056|ref|YP_003984278.1| type IV leader peptidase family protein [Rothia dentocariosa ATCC
17931]
gi|310944550|gb|ADP40844.1| type IV leader peptidase family protein [Rothia dentocariosa ATCC
17931]
Length = 177
Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 22/142 (15%)
Query: 26 DLFSAMIPNRVSIVMLGSF-----LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
DL +PNR+ + + ++ A L + L F + +F
Sbjct: 40 DLRKHRLPNRIVFPFVFATHTALPVIAALSGQWGTILRVWGSGLVLWAFYVLMRMLSFGA 99
Query: 81 MGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
+G GDVKL + G+ L ++GG+ +V ++ R
Sbjct: 100 LGRGDVKLALALGGLIGYFSWANLLWATLVTFVVGGLCAVVLVLSR-------------- 145
Query: 139 KSFLMKNKIPYGIAISMGGLIS 160
S + +I +G + +G + +
Sbjct: 146 -SVTRRTRIAFGPFMLIGMIAA 166
>gi|134298696|ref|YP_001112192.1| hypothetical protein Dred_0829 [Desulfotomaculum reducens MI-1]
gi|134051396|gb|ABO49367.1| hypothetical protein Dred_0829 [Desulfotomaculum reducens MI-1]
Length = 174
Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 2/139 (1%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLL 63
MVF ++ +V L D++ +IP ++ + + L I L
Sbjct: 1 MVFLGFDMLVGVLVVGGCLKDIWHRVIPKWCTVGIFLLAVTVNILKFGWLSGIINTLTGA 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ L + +GGGD KL+ + + GW + G + +
Sbjct: 61 LFLTSMYLMLGVMFKQRLGGGDWKLIIALGAYVGWNDMSGLLPIQLFFAGIMELLHFAVR 120
Query: 124 RMITNHIPIFGMFVPKSFL 142
F +
Sbjct: 121 SKAILPWSFVMAFKDRLIA 139
>gi|148252849|ref|YP_001237434.1| putative Type II secretory pathway, prepilin signal peptidase
[Bradyrhizobium sp. BTAi1]
gi|146405022|gb|ABQ33528.1| putative Type II secretory pathway, prepilin signal peptidase
[Bradyrhizobium sp. BTAi1]
Length = 163
Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 21/161 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ +DL S ++P+ ++ ++ S L+ +
Sbjct: 5 IDILCIAALLPTCAGLIWTDLRSGLLPDWMNAIIAISGLVRMAAGDDPSSALWGAAAALA 64
Query: 67 IVFIICFC------FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ ++ +G GDVK L + +W G + + L + V
Sbjct: 65 VGIVLLLLRRLYAMVRGRQGLGLGDVKFLMAATLWTGLSGLPILLLVATMTALAGVLVLF 124
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ R + +P+G + +G L
Sbjct: 125 VMGRR---------------LTGQTALPFGPFLVIGLLAVL 150
>gi|308371052|ref|ZP_07423676.2| hypothetical protein TMCG_01796 [Mycobacterium tuberculosis
SUMu003]
gi|308375553|ref|ZP_07444318.2| hypothetical protein TMGG_02322 [Mycobacterium tuberculosis
SUMu007]
gi|308379236|ref|ZP_07485601.2| hypothetical protein TMJG_01531 [Mycobacterium tuberculosis
SUMu010]
gi|308329946|gb|EFP18797.1| hypothetical protein TMCG_01796 [Mycobacterium tuberculosis
SUMu003]
gi|308345970|gb|EFP34821.1| hypothetical protein TMGG_02322 [Mycobacterium tuberculosis
SUMu007]
gi|308357630|gb|EFP46481.1| hypothetical protein TMJG_01531 [Mycobacterium tuberculosis
SUMu010]
Length = 134
Score = 36.4 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 2/131 (1%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
+ + D+ +PN +++ G LL A L G +A + + ++
Sbjct: 1 MLAWMGVLCVCDVRQRRLPNWLTLPGAGVILLFAGLAGRGVPALAGAAALAGVYLLVHLA 60
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
A MG GDVKL G + FL +A ++ +P
Sbjct: 61 LPA--AMGAGDVKLAIGLGGLTGCFGVEVWFLAALAAPLLTAVCGVMVTPWGVRTLPHGP 118
Query: 135 MFVPKSFLMKN 145
S
Sbjct: 119 SMCVASLGAVG 129
>gi|111017168|ref|YP_700140.1| apolipoprotein N-acyltransferase [Rhodococcus jostii RHA1]
gi|110816698|gb|ABG91982.1| apolipoprotein N-acyltransferase [Rhodococcus jostii RHA1]
Length = 567
Score = 36.4 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 11/126 (8%)
Query: 35 RVSIVMLGSFLLTAFLLGMDYE---LIALHLLVGLIVFIICFCFFAFNIMGGGD------ 85
R + + FL+ A I + LL ++ G G
Sbjct: 19 RSVLSVAAGFLVFAGFPPRPLWFLAPIGIALLTLILTGAGGAAPRLRAGFGYGYLAGLGF 78
Query: 86 -VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
V LL V+ G P +G + +L R+ + I + +L
Sbjct: 79 LVPLLPWIGVFVGALPWLALAAVESLYIGLFGVLAVLVSRLRWAPLWIAACWSLTEWLRA 138
Query: 145 NKIPYG 150
+ +P+G
Sbjct: 139 S-VPFG 143
>gi|320160862|ref|YP_004174086.1| hypothetical protein ANT_14580 [Anaerolinea thermophila UNI-1]
gi|319994715|dbj|BAJ63486.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
Length = 260
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 26/152 (17%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN- 79
+ D +I + SI + L +A ++F++ F
Sbjct: 115 LIVVIDFEHRLILEKTSIAGGILAFVIGVRLHGIGMTLAGGTAGAALLFLLFLGGEVFRR 174
Query: 80 -------------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
MG GDV L + GW + G + + + ++ +
Sbjct: 175 WMEKRRGEPISEVAMGFGDVILSGIIGLILGWPGILAGLFLAILAGGIVSGLIMFSMIIR 234
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
N+ IPYG + L
Sbjct: 235 KNYQAF------------TAIPYGPYLIFATL 254
>gi|154246048|ref|YP_001417006.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2]
gi|154160133|gb|ABS67349.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2]
Length = 195
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 45/152 (29%), Gaps = 21/152 (13%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF-------C 74
A+ D +IP+ ++ + L A + + +L G + +
Sbjct: 53 IAVIDARHFIIPDSLNALGALLGLAAAATAPEPADGLGAAILGGAALAFVFLAIHLGYRA 112
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+ +G GDVKL +W T ++ + L
Sbjct: 113 LRGRDGLGLGDVKLAAVAGIWLSVTAMPVAVEIAALAGLLAYGITRLAAGRAVRV----- 167
Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
++++P+G+ + I +
Sbjct: 168 ---------RDRLPFGLFFAPAIWIGWLFDRW 190
>gi|197123320|ref|YP_002135271.1| peptidase A24A prepilin type IV [Anaeromyxobacter sp. K]
gi|196173169|gb|ACG74142.1| peptidase A24A prepilin type IV [Anaeromyxobacter sp. K]
Length = 170
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 1/124 (0%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M F F L AA SD I NR+++ + + + G +
Sbjct: 2 MASPLAFGTFGFLLAVAAASDAAGRRISNRITVPLAVGGIALQAVAGGLAGAAGALVATA 61
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + + ++ +GGGD KL + A W G GG+ +V L
Sbjct: 62 AVG-ALLWVPWSRGWLGGGDWKLAVAAAPWVGLGSLASYLTTSAVAAGGLATVAWLASGG 120
Query: 126 ITNH 129
Sbjct: 121 AARR 124
>gi|86741896|ref|YP_482296.1| peptidase A24A, prepilin type IV [Frankia sp. CcI3]
gi|86568758|gb|ABD12567.1| peptidase A24A, prepilin type IV [Frankia sp. CcI3]
Length = 218
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 22/157 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIV----MLGSFLLTAFLLGMDYELIALHLLVGL 66
++ V+ A+ DL +P+ + + + G F L A L G L+ +
Sbjct: 71 AYVYLAVVGVWLAVIDLRVHRLPDHLVLPSYPVLAGLFGLAALLTGEPGRLLRAGMAAAA 130
Query: 67 I-VFIICFCFFAFNIMGGGDVKL--LTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ V + +G GDVK+ L A+ + PS + LF +LGG+ + +L
Sbjct: 131 VWVIFLGVHCLPRAGLGRGDVKVSGLLGGALGWLGWPSVVFGLFAGIVLGGLWASALLVA 190
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++I YG + G L++
Sbjct: 191 GRVG---------------RHDRIAYGPFLLAGTLLA 212
>gi|269926516|ref|YP_003323139.1| peptidase A24A prepilin type IV [Thermobaculum terrenum ATCC
BAA-798]
gi|269790176|gb|ACZ42317.1| peptidase A24A prepilin type IV [Thermobaculum terrenum ATCC
BAA-798]
Length = 207
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 5/129 (3%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-----TAFLLGMDYELIALHLLVGLIV 68
I L DL ++ V I + + LL L + L+V ++
Sbjct: 65 IYIAILAACGAIDLQRRLVYPSVVITGILASLLLNPLLCNTNLTNTLVGLLEGLIVFTLI 124
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
F I F + +G GD+ L G + + + V + G ++ ++T +
Sbjct: 125 FAIGIMIFRASALGVGDILLAAMIGGMVGARSALAALILGVVLAGVYATLLLITGKASRK 184
Query: 129 HIPIFGMFV 137
FG +
Sbjct: 185 SYFAFGAPL 193
>gi|21070279|gb|AAM34242.1|AF508194_1 FlaK [Methanococcus voltae PS]
Length = 233
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLLVGL 66
+ I L+ A++ D+ S I N + I M LL + L + I + +
Sbjct: 2 IAYAIGLLGLLIASIQDIKSREIENYIWIGMAVIGLLLSTYLSFTTGNFMPIISSISGFI 61
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
I FII + F +GG D K+L
Sbjct: 62 ICFIIGYLMFVL-GIGGADGKILMGMGALIP 91
>gi|262039371|ref|ZP_06012684.1| type IV prepilin leader peptidase PilD [Leptotrichia goodfellowii
F0264]
gi|261746633|gb|EEY34159.1| type IV prepilin leader peptidase PilD [Leptotrichia goodfellowii
F0264]
Length = 150
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 2/134 (1%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FF 76
L + + D+ +IP R +++L L A E + + + +
Sbjct: 12 LAYIFIIDIKRKIIPERGFLILLAMGFLKALYFNYLTEWYLGICAFSMPLLFLYIVEDYV 71
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
++G GD+KL+ + + + F++ + I +
Sbjct: 72 KKELIGFGDIKLMMAVGGLLRYENISETVRFYIFLYILGGIFSIFLSAYLKIRKKKTEYI 131
Query: 137 VPKSFLMKNKIPYG 150
F++ I +G
Sbjct: 132 AFGPFIIMTYIVFG 145
>gi|297619745|ref|YP_003707850.1| peptidase A24A domain-containing protein [Methanococcus voltae A3]
gi|297378722|gb|ADI36877.1| Peptidase A24A domain protein [Methanococcus voltae A3]
Length = 338
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 13/136 (9%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+++ F + A +D+ +IP+ ++I+M + F ++ IA + ++
Sbjct: 5 IIAYILNGFLIGLATYTDIKEKIIPHYITIIMFLLNVSVGFY-YFGFDSIAALISTLILG 63
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF------LSFLFFVAILGGILSVFILT 122
I+ MGGGD+KL + A F ++ + + I I + +
Sbjct: 64 LILGV------GMGGGDIKLFATLAPIFAYSSFLYVPIPIFAIILLSFIFASIWPMKTIF 117
Query: 123 VRMITNHIPIFGMFVP 138
++ +P G
Sbjct: 118 IKYWKEIVPSAGYMAM 133
>gi|94984482|ref|YP_603846.1| peptidase A24A-like protein [Deinococcus geothermalis DSM 11300]
gi|94554763|gb|ABF44677.1| peptidase A24A-like protein [Deinococcus geothermalis DSM 11300]
Length = 380
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 21/112 (18%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---------MDYELIALHLLVGLIVFII 71
A++ DL + IP+ +++ + L A L+G + +
Sbjct: 117 VASVIDLDTFTIPDELTLPGVALGLAFAGWNTRAGAVAAGLPTLAGALQGALLGAGLLVT 176
Query: 72 CFCF------------FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ +G + L W G + L A+
Sbjct: 177 IDLLGSWVLRRFRERQYPERPIGYQQISLGLLVGAWLGPWWGLGAALLSAAV 228
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 19/99 (19%)
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
F + MG GDVKL + GW ++ + V + + + R
Sbjct: 298 FDPSAMGFGDVKLAAVIGAFLGWERLLVAVVVAVFAGALLGLLQVALRRENRVK------ 351
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G +++G +++ G+
Sbjct: 352 -------------FGPYLALGAVVALFWGGEIVATYRGI 377
>gi|320333398|ref|YP_004170109.1| Prepilin peptidase [Deinococcus maricopensis DSM 21211]
gi|319754687|gb|ADV66444.1| Prepilin peptidase [Deinococcus maricopensis DSM 21211]
Length = 375
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 19/96 (19%)
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
F + MG GDVKL + GW ++ + V + V + R
Sbjct: 293 FDASAMGFGDVKLAAVIGAFLGWEQFLVALVVAVLAGAVLGVVQLAIWRENRLK------ 346
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
+G +++G L++ A
Sbjct: 347 -------------FGPYLAIGALVALLFGQQLIHAY 369
>gi|257413128|ref|ZP_04742090.2| putative type IV prepilin peptidase [Roseburia intestinalis L1-82]
gi|257204523|gb|EEV02808.1| putative type IV prepilin peptidase [Roseburia intestinalis L1-82]
gi|291540426|emb|CBL13537.1| Type IV leader peptidase family [Roseburia intestinalis XB6B4]
Length = 146
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 20/158 (12%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
KM+ + + L +A D + I + LL M+ +I + L
Sbjct: 5 YGKMLQNTLILGFFSI---SAFQDYRNRKINIYFLLTGGIIGLLFHLYS-MELSIIEILL 60
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
+G+ + I+ F ++ +G D +L + ++ G+ + F+ + + G +
Sbjct: 61 GMGIGMMILFFGLWSGGSVGRADGMILVVSGIFLGFEKNVEVFVMGLFLAGITSLFLSVI 120
Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
R +IP+ + G L
Sbjct: 121 RRK----------------GRTYRIPFAPFLLAGYLFV 142
>gi|134298815|ref|YP_001112311.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
gi|134051515|gb|ABO49486.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
Length = 142
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 3/127 (2%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ I + A++D +I +++++ + + LL AL ++ +
Sbjct: 1 MTWYIVFTFTLACAVTDYRKYLIYDKITLPAMATGLLFHITPWGFGNKYALVGILFGFII 60
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
F D KLL + W G+ L + ++ L +
Sbjct: 61 GYLGAIFGGGGG---DAKLLMAIGAWQGFYNLILIIFIALWSALVYFAILHLYYFIKKQP 117
Query: 130 IPIFGMF 136
P F
Sbjct: 118 APKVIPF 124
>gi|222530416|ref|YP_002574298.1| peptidase A24A prepilin type IV [Caldicellulosiruptor bescii DSM
6725]
gi|222457263|gb|ACM61525.1| peptidase A24A prepilin type IV [Caldicellulosiruptor bescii DSM
6725]
Length = 147
Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + ++ L FAA+ D IPN +++L + L + + + +
Sbjct: 1 MSKVILSVLLILILSFAAVYDFKKREIPNIAVVLLLFVAAVKVILNRN-FGNVIIFAIYT 59
Query: 66 LIVFIICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
L + F I +G GD+KLL++ +++FG+ FL L I G + V
Sbjct: 60 LFLLATYFFSEKRGIYLLGEGDIKLLSALSLYFGFD--FLKVLLLTCISGFVAGFIAGIV 117
Query: 124 RMITNHIPIFGMFV 137
+
Sbjct: 118 NKTYLETYVPLAPF 131
>gi|333025154|ref|ZP_08453218.1| putative type IV peptidase [Streptomyces sp. Tu6071]
gi|332745006|gb|EGJ75447.1| putative type IV peptidase [Streptomyces sp. Tu6071]
Length = 247
Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 24/160 (15%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALH 61
V+L+ V +DL +P+ +++ L + + L
Sbjct: 94 ELFVWLLLAPPGVLLFRTDLRVQRLPDPLTLTTAPLAAALLGLAALHPEHAGSWPRALLG 153
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVF 119
+ F + F + + +G GDVKL + W + +F +L + +
Sbjct: 154 AVALAGGFAVLF-LVSPSGLGFGDVKLALLLGLALTWYGWGALFLGVFAGFLLAALYGLV 212
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
++ +R + IP+G A+ G +
Sbjct: 213 LIALRRA---------------TRRTAIPFGPALLAGAYL 237
>gi|89897410|ref|YP_520897.1| hypothetical protein DSY4664 [Desulfitobacterium hafniense Y51]
gi|89336858|dbj|BAE86453.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 172
Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 22/149 (14%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
L+ ++ D+ +IP+ + + + + L + L + L+ +
Sbjct: 44 FFAALLLAVSVFDIRKKIIPDSLCLGIAMTGLFAFEPAKLAGLLASALFLLAALALGGMG 103
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
D+KL+ + + G++ S A++G + +I +
Sbjct: 104 GG---------DIKLMATAGLVLGFSKS-----IAAAVIGLTALLVFHVGNIIIQKLCGR 149
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ P +S+G L +Y
Sbjct: 150 --------DARKSYPLAPFLSLGCLAAYF 170
>gi|332765440|gb|EGJ95658.1| putative membrane protein [Shigella flexneri 2930-71]
Length = 110
Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L+ V ++ F F+ I+GGGDVKLLT ++ + ++ +L
Sbjct: 19 LVAAGSVLLVGFFLFSAGIIGGGDVKLLTVLSLAIDEHELANFLVAMTFCGALVVLAGLL 78
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
R + +N +PY + IS+ L++YP LF
Sbjct: 79 FFRKS---------------IRENGVPYAVPISLAFLLTYPVFPLF 109
>gi|284008055|emb|CBA74186.1| conjugative transfer prepilin peptidase PilU [Arsenophonus
nasoniae]
Length = 215
Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 43/159 (27%), Gaps = 16/159 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELI 58
M + L+ L D S +P ++V + + LL + +
Sbjct: 53 MLAPSPLQGLFSLVFLAFLALFIYLDAASRCLPRCFTLVFGLTGAVFRLLLSPESVLTAL 112
Query: 59 ALHLLVGLIVFIICFCFFAFNI---MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
L++ ++ + + + G GDV L+ +WF + G
Sbjct: 113 LAALIIFGVLLGLRTFAYRRDGYAQFGLGDVYLMAGLGMWFSFPAVLWVISGAAVSGGIF 172
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
L + + P+ +
Sbjct: 173 LLA-----------RRSRHPMQWQENVTYRSAPFAPFLC 200
>gi|154508863|ref|ZP_02044505.1| hypothetical protein ACTODO_01374 [Actinomyces odontolyticus ATCC
17982]
gi|153798497|gb|EDN80917.1| hypothetical protein ACTODO_01374 [Actinomyces odontolyticus ATCC
17982]
Length = 230
Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF---- 78
A D + +PN ++ M +L + G+ L LL LI +I F A
Sbjct: 90 AYVDARTHRLPNAYTVAMGIGVVLGVIVGGVISPLWQERLLGALIGALIWFVPIALLNRL 149
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MGGGDVKL G +G + F L + ++ + V
Sbjct: 150 PGGMGGGDVKLAPVLGALVG-------------SVGLHAAFFALALSFVSAGVAALWKIV 196
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
S K ++P G + L+
Sbjct: 197 VGSAGTKTRVPMGPWMIGAALV 218
>gi|146342613|ref|YP_001207661.1| AcrB family metabolite exporter [Bradyrhizobium sp. ORS278]
gi|146195419|emb|CAL79444.1| putative multidrug efflux transporter (AcrB family); putative
acriflavin resistance protein [Bradyrhizobium sp.
ORS278]
Length = 849
Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 45/153 (29%), Gaps = 18/153 (11%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII-- 71
+ ++ L D + ++P V + LG L L +V I ++
Sbjct: 40 VLVLIVILIFLQDWRAMLVPTTTVPVTIIGAFAAMAALGFTINLSTLFAIVLAIGIVVDD 99
Query: 72 ------CFCFFAFNIMGGGDVKLLTS---TAVWFGWTPSFLSFLFFVAILGGI------- 115
M G D + A G T ++ A L G+
Sbjct: 100 AIVVVEGAAHNIERGMNGHDAAIRAMDQLFAPIVGVTLVLIAVFLPAAFLPGLTGRIYAQ 159
Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIP 148
++ I +++ ++ ++ +P
Sbjct: 160 FALVIAATALLSAINAAMLKPTQRALWLRPPVP 192
>gi|312794263|ref|YP_004027186.1| peptidase a24a prepilin type IV [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181403|gb|ADQ41573.1| peptidase A24A prepilin type IV [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 143
Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M + + + L++AA+ D IPN + ++ F ++A + ++ + + V
Sbjct: 1 MSKTIISTLLILILLYAAVYDFKKREIPN---VAVILLFFVSAAKVILNRSYSNVIVFVI 57
Query: 66 LIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+F + F ++G GD+KLL+ +++FG FL L I G +
Sbjct: 58 YTLFFLAIYIFVEKKGIYLLGEGDIKLLSVLSLYFGLD--FLKVLILTCISGFAAGIVTG 115
Query: 122 TVRMITNHIPIFGMFV 137
V+ I
Sbjct: 116 IVKKTYLKTCIPLAPF 131
>gi|227824332|ref|ZP_03989164.1| peptidase A24A [Acidaminococcus sp. D21]
gi|226904831|gb|EEH90749.1| peptidase A24A [Acidaminococcus sp. D21]
Length = 248
Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 18/159 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
LV ++ D + + S++ L L L G + + L + +
Sbjct: 103 FYLFSFLVLISVMDGKEKFVYDA-SLLFLIGGALFHLLFGASFFRMVGGSLFLGLPLWMI 161
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ + MG GDV L S ++ S L+ + ++ + R
Sbjct: 162 YGL-SRGRMGFGDVTLAFSLGLFLDGERSLLTLFLASLLGIAFSALMMALGRRKW----- 215
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
++ +P+ + + + ++
Sbjct: 216 -----------RDPLPFAPFLCTAAFFLFVRPDVARLYF 243
>gi|254252522|ref|ZP_04945840.1| Type II secretory pathway prepilin signal peptidase PulO
[Burkholderia dolosa AUO158]
gi|124895131|gb|EAY69011.1| Type II secretory pathway prepilin signal peptidase PulO
[Burkholderia dolosa AUO158]
Length = 134
Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 2/111 (1%)
Query: 40 MLGSFLLTAFLLGMDYELIALHLLVG-LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98
L L AF+ + + A+ +G L + F FF +MG DVK+ W G
Sbjct: 3 GLTGALAGAFIGANPFGISAMQAALGMLAGLVGLFPFFLLRVMGAADVKIFAVLGAWCG- 61
Query: 99 TPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
+ L ++ GI ++ ++ + + PY
Sbjct: 62 AHALLWLWVAASVAAGIHALVVMLLSRTPIGALWRRGAPALTLGGYRATPY 112
>gi|170701749|ref|ZP_02892685.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria IOP40-10]
gi|170133332|gb|EDT01724.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria IOP40-10]
Length = 106
Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
L+ + F FA +MG DVK+ W G P L ++ G+ + ++ +
Sbjct: 2 LVGLVSFFPLFAMRVMGAADVKVFAVLGAWCGL-PILLWLWVIASLAAGVHVLGLMLLTR 60
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ + PY + + I
Sbjct: 61 TPLGALWVRGLPAMALGGRRSTPYAACLVVPAAI 94
>gi|300934539|ref|ZP_07149795.1| hypothetical protein CresD4_10746 [Corynebacterium resistens DSM
45100]
Length = 152
Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 1/118 (0%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+ + ++L + D + +PN ++ + + +L L
Sbjct: 1 MGTTTLAGVIWLAYGVWGGWICWIDATTRRLPNTLTWPAFIATAIFTVVLPHWQPQQLLG 60
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
L+ + I GGGD KL + F +A+ G +
Sbjct: 61 GLLWAMFIIFAPLVSRRMQAGGGDAKLALTLGT-LATGEEFWGLWVAMAVAGLVGVGI 117
>gi|254177482|ref|ZP_04884137.1| putative fimbriae assembly-related protein [Burkholderia mallei
ATCC 10399]
gi|160698521|gb|EDP88491.1| putative fimbriae assembly-related protein [Burkholderia mallei
ATCC 10399]
Length = 149
Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 19/148 (12%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ + L AL+DL + + + A + A H +G F +
Sbjct: 7 LVASWTLASLALADLRTRRL----------ATFAVALVGAPGDGGFASHAALGAAAFALG 56
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F + GGDVKL +W G ++ + +V I R
Sbjct: 57 AAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGRAPRVLAW- 115
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
F +PYG+A++ GGL++
Sbjct: 116 --------FAPARGVPYGVALAAGGLLA 135
>gi|118462509|ref|YP_882609.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Mycobacterium avium 104]
gi|254775873|ref|ZP_05217389.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Mycobacterium avium subsp. avium ATCC 25291]
gi|118163796|gb|ABK64693.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Mycobacterium avium 104]
Length = 142
Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
L + D+ +PN +++ + L A L G +A + I ++ A
Sbjct: 12 WLAVLSCYDIRQHRLPNALTLTGAAAILAAAGLAGRGPSALAGAAALAAIYLLVHAV--A 69
Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MG GDVKL G + FL +A V +L G +
Sbjct: 70 PGGMGAGDVKLALGVGALTGCGGVGVWFLAALAAPLLTALVGVLARVRRAGPAVPHGPSL 129
>gi|330887958|gb|EGH20619.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
mori str. 301020]
Length = 156
Score = 36.0 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 4/151 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ V A D I N +++ G + + +
Sbjct: 3 LFLLLVWFVICAEQDARRKHISNGLTLGAAALAAAWLAGTGTTWLGAPPLEAALALALAL 62
Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+A +G GDVKL+ + A+ +F+ + + + I
Sbjct: 63 GLTLPGYALGKLGAGDVKLMAALALASDSVYLLCTFIGAGIAVLTWVVLARKVQHHINQR 122
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++ +K P+ + G L++
Sbjct: 123 VARRYAYMFP--DAPDKYPFSPFLLAGLLLT 151
>gi|318057890|ref|ZP_07976613.1| type IV peptidase [Streptomyces sp. SA3_actG]
Length = 247
Score = 36.0 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 24/160 (15%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALH 61
V+L+ V +DL +P+ +++ L + + L
Sbjct: 94 ELFVWLLLAPPGVLLFHTDLRVQRLPDPLTLTTAPLAAALLGLAALHPEHAGSWPRALLG 153
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVF 119
+ F + F + + +G GDVKL + W + +F +L + +
Sbjct: 154 AVALAGGFAVLF-LVSPSGLGFGDVKLALLLGLALTWYGWGALFLGVFAGFLLAALYGLV 212
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
++ +R + IP+G A+ G +
Sbjct: 213 LIALRRA---------------TRRTAIPFGPALLAGAYL 237
>gi|312215002|emb|CBX94955.1| hypothetical protein [Leptosphaeria maculans]
Length = 871
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Query: 10 AVFLIPPFCLVFAALSD-LFSAMIPNRV---SIVMLGSFLLTAFLLGMDYELIALHLLVG 65
V LI P +V D L +I + V + L L F ++ + L
Sbjct: 357 VVALIFPVVVVALRSPDILRIFLISDLVSAAVVPCLVLGLSERFYWYRGFDFVIGGLGGI 416
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+F+ F+ ++ G++ LL + ++ F +F+ A GG+L
Sbjct: 417 FTIFLFGLVFYDGDVTMAGNL-LLLESGLYADDWSVFGAFV--AAPFGGLLWAMGACGLR 473
Query: 126 ITNHIPIFGMFVPKSFLMKNKIP 148
I+ + + + IP
Sbjct: 474 ISFLWIMAKARGRRFDALDRPIP 496
>gi|239629084|ref|ZP_04672115.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519230|gb|EEQ59096.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 139
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 16/124 (12%)
Query: 55 YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
A +V+ + F FF + G GD+K+ A G S ++ + +LG
Sbjct: 15 LTAAAGFAARMALVWALGFPFFVLGMTGAGDIKMAGLIAASLGIRDS-VTAVMAGLVLGA 73
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNK---------------IPYGIAISMGGLI 159
+L++ + + + + + K IP+G + G L+
Sbjct: 74 VLALGRMLHQGSICQRFSYLSAYIRRTVQTRKAEKYYCPQRDGYGCVIPFGACLYAGTLL 133
Query: 160 SYPD 163
+
Sbjct: 134 TVLW 137
>gi|70570843|dbj|BAE06631.1| patched receptor [Ciona intestinalis]
Length = 976
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 18/92 (19%)
Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
DL + + V+ F++ + +L + + L + +I + MG
Sbjct: 534 YIDLRY-WLFVSLGCVIAAVFVVLSIVLFNPWAAAIMALFLAMIATELL------GFMGA 586
Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
VKL + + +I G+
Sbjct: 587 AGVKLSAV-----------PAVILVASIGLGV 607
>gi|289191833|ref|YP_003457774.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus sp.
FS406-22]
gi|288938283|gb|ADC69038.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus sp.
FS406-22]
Length = 254
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 39/177 (22%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL--------- 60
++ C ++ A+ D + + + I ML +L FL I +
Sbjct: 3 LAYIYGLICSIYGAVEDWKKREVSDFLWISMLWVGVLVHFLYNKSLLTIFIEILAILFIT 62
Query: 61 -----------------------------HLLVGLIVFIICFCFFAFNIMGGGDVKLLTS 91
L LI ++I + N MGGGD K L
Sbjct: 63 ISVRYEKFNKLVYVGIFLFLLSFILFKSYFALSFLIFYLIGIFLYYLNFMGGGDCKFLMG 122
Query: 92 TAVWFGWTPSFLSFL-FFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
G +F+ FL + ++ L++ ++ ++ + +K I
Sbjct: 123 LGYLKGMFFTFVIFLNAILFVIPYCLAILLINIKNKSYKGLKLKNLPLLFIALKKDI 179
>gi|241890142|ref|ZP_04777440.1| A24 family peptidase [Gemella haemolysans ATCC 10379]
gi|241863764|gb|EER68148.1| A24 family peptidase [Gemella haemolysans ATCC 10379]
Length = 254
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 47/144 (32%), Gaps = 19/144 (13%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D+ S + + + +++ + ++ + + + L++ F +G GD
Sbjct: 130 DIKSFEVNDELFYLLIILNFSSIYIHYYLFNFLDF---IYLVIIFHILYIFTRGGLGYGD 186
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
+K+ A+ L F + G ++ ++ ++ + K
Sbjct: 187 IKVFCVLALNLNLFEGVY-LLIFTFLYAGFFAIGLIILKKVK---------------RKT 230
Query: 146 KIPYGIAISMGGLISYPDSYLFKV 169
K+P I++ L
Sbjct: 231 KLPLVPFIALSYLTIILIREGLLW 254
>gi|283853774|ref|ZP_06370999.1| peptidase A24A domain protein [Desulfovibrio sp. FW1012B]
gi|283570836|gb|EFC18871.1| peptidase A24A domain protein [Desulfovibrio sp. FW1012B]
Length = 263
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 21/169 (12%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-LTAFLLGMDYELIALHLLVGLIV 68
A FL + A+ D ++PN ++ + + A + A+ G V
Sbjct: 110 AAFLALGGLYIVASGIDFQVYLLPNFLTYPAAVLGIGIGALHPAVGPWSAAVGAAAGFGV 169
Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
F + + + +GGGDVKL+ S G S L
Sbjct: 170 FWLLATGYRLAKGVDGLGGGDVKLMLSIGGALGVLGLPYSVLLGSIAA------------ 217
Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
+ + IP+G + G ++ L G
Sbjct: 218 ----LVASPFYVRGQGKGRSMPIPFGPFLCFGAMVQILYGPALFRLLAG 262
>gi|255026816|ref|ZP_05298802.1| hypothetical protein LmonocytFSL_11676 [Listeria monocytogenes FSL
J2-003]
Length = 193
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
++ I + L F ++D+F +PN + IV A L + + + +
Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQTLMDLIYSGGISCLFY 157
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
++ F F +G GD+K+L + + G+ + F
Sbjct: 158 LLFFIIFRK-GIGLGDIKILIILSTFLGFKIGYYIFF 193
>gi|293192683|ref|ZP_06609637.1| peptidase, A24 family [Actinomyces odontolyticus F0309]
gi|292820190|gb|EFF79187.1| peptidase, A24 family [Actinomyces odontolyticus F0309]
Length = 230
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF---- 78
A D + +PN ++ M +L + G+ L LL LI +I F A
Sbjct: 90 AYVDARTHRLPNAYTVAMGIGVVLGVIVGGVISPLWQERLLGALIGALIWFVPIALLNRL 149
Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
MGGGDVKL G +G + F L + ++ + V
Sbjct: 150 PGGMGGGDVKLAPVLGALVGS-------------VGLHAAFFALALSFVSAGVAALWKIV 196
Query: 138 PKSFLMKNKIPYGIAISMGGLI 159
S K ++P G + L+
Sbjct: 197 VGSAGTKTRVPMGPWMIGAALV 218
>gi|167570109|ref|ZP_02362983.1| peptidase, putative [Burkholderia oklahomensis C6786]
Length = 113
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 30/85 (35%)
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ G++ + F FFA +MG DVK+ W G + ++ G +
Sbjct: 4 ALIGGIVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLSALPWLWIVASIAAGIHALGLM 63
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKN 145
L R + G ++
Sbjct: 64 LLSRTSFGSLGRHGAPAFALGARRS 88
>gi|292657101|ref|YP_003536998.1| prepilin peptidase [Haloferax volcanii DS2]
gi|291370373|gb|ADE02600.1| prepilin peptidase [Haloferax volcanii DS2]
Length = 350
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 9/110 (8%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL---------L 51
M + + L L + A+ D+ + +PN V + +
Sbjct: 1 MFGIGTLPDLLRLAVLPVLAWTAVRDVRTRRVPNIVWYPLAALGIALLAWELLGHFPPET 60
Query: 52 GMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
D + + +V + + F+ GG D K L AV PS
Sbjct: 61 VFDRLYLIRVGVSVCLVVPLSYLFWRLGGFGGADAKALMVFAVLLPTFPS 110
>gi|331082854|ref|ZP_08331976.1| hypothetical protein HMPREF0992_00900 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400183|gb|EGG79832.1| hypothetical protein HMPREF0992_00900 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 169
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 1/109 (0%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L A D + N +V + + L L+ ++
Sbjct: 6 LFVLCFSGIAMCMDFLMERVVNGFIVVFFLTGFFWQ-MGENGIAGTLSGGLGLLLPCVLL 64
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
F F F ++G GD+KL + ++ G T F L + + G + F++
Sbjct: 65 FPLFYFRMLGAGDIKLFSGLGIFLGVTAVFKLILCSLFLGGLLSFAFLI 113
>gi|218665130|ref|YP_002427085.1| hypothetical protein AFE_2708 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218517343|gb|ACK77929.1| membrane protein, putative [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 147
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 2/105 (1%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
V+ A D +PNR+++ L L L G + +
Sbjct: 3 VALWAVWGAQGDYRRQRLPNRLTLSALALGLAVLPLTGRCLLGAPWSAALLGVAAAFLAL 62
Query: 75 F--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+ + ++ GDVK + G F +L I +++
Sbjct: 63 LPAYVWRLVAAGDVKFFMAMGALGGVDVLFPIYLAAGVITLALVA 107
>gi|145597004|ref|YP_001161301.1| hypothetical protein Strop_4495 [Salinispora tropica CNB-440]
gi|145306341|gb|ABP56923.1| hypothetical protein Strop_4495 [Salinispora tropica CNB-440]
Length = 255
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 18/140 (12%)
Query: 26 DLFSAMIPN-----RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
DL +P+ V ++ L + A+ V + +
Sbjct: 126 DLRVLRLPDPLVGVAVGGGLVLLALAAVADQAVPALGRAVLAAALCGVGYLTLALLPRSP 185
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
+G GDVKL + ++ GW LG + + + N + G+ V
Sbjct: 186 LGFGDVKLGAALGLYLGW-------------LGWPTVAVGVLLAPLVNLPLVIGLLVTGR 232
Query: 141 FLMKNKIPYGIAISMGGLIS 160
+ IPYG A+ + + +
Sbjct: 233 ADRRTPIPYGPAMLVSAIAA 252
>gi|315424982|dbj|BAJ46657.1| hypothetical conserved protein [Candidatus Caldiarchaeum
subterraneum]
Length = 237
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVGLIVFII 71
I L++++ D+ + + V ++ LL ++ + + L+ +
Sbjct: 8 IVSLTLLYSSYLDIKKREVDDIVWVIPSILGLLLNLYTVYVVGFDYLVRYGAAVLVSAGV 67
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
F + + GG D K L + A+ ++ + L ++ +
Sbjct: 68 GFALYFAGLYGGADAKALVTIALVQPFSYTGLQLHGVTSLTVLTNGMIF 116
>gi|160934262|ref|ZP_02081649.1| hypothetical protein CLOLEP_03133 [Clostridium leptum DSM 753]
gi|156866935|gb|EDO60307.1| hypothetical protein CLOLEP_03133 [Clostridium leptum DSM 753]
Length = 683
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 55/176 (31%), Gaps = 11/176 (6%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT---AFLLGMDYEL 57
M M+ ++I F L+F + S +I R L + L + +E
Sbjct: 54 MTLQSMLSFGSWVIGAFALIFLFYT--NSFLIRRRKKEFGLYNILGMGKGNLARILLWES 111
Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGD-VKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+ + + + +G + V + ++ G + L F I +L
Sbjct: 112 LIVAGIALIAGLFFGILLSKLAELGMVNLVNGDITFSLSLGPDAILRTLLLFAVIFLLLL 171
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
+ + + I + N +++ G++ +Y V +
Sbjct: 172 LNALRQIHLTNPIELIHSENAGERPPKANW-----FLALAGIVILGAAYFIAVTIE 222
>gi|325284210|ref|YP_004256751.1| Prepilin peptidase [Deinococcus proteolyticus MRP]
gi|324316019|gb|ADY27134.1| Prepilin peptidase [Deinococcus proteolyticus MRP]
Length = 388
Score = 35.6 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 19/99 (19%)
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
F + MG GDVKL + + G + +S L G IL V + ++
Sbjct: 306 FDPSAMGFGDVKLAGAIGAFLGLSGVLVS-LGVAIFAGAILGVIQMAMKAENRLK----- 359
Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+G +++G +++ G+
Sbjct: 360 -------------FGPYLAIGAVVAMLWGDDVVSWYRGM 385
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--------DYELIAL 60
+ ++ L+ + DL + IP+ +++ + L A L G ++
Sbjct: 107 TLGLMLFFTILLAGSAIDLDTYTIPDELTLPGVALGLGFAALAGAGLTAGGLPNFSDALN 166
Query: 61 HLLVGLIV-----FIICFCFFAFNI-------MGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
L+G + + + F +G + L W G + L
Sbjct: 167 GALMGAGILMTIDLLGSWVLRRFRERQYPDLPIGHQQIALALLVGAWAGPLWGLGAALLS 226
Query: 109 VAILGGI 115
A+ G
Sbjct: 227 AAVNAGA 233
>gi|289675729|ref|ZP_06496619.1| peptidase A24A, prepilin type IV [Pseudomonas syringae pv. syringae
FF5]
Length = 156
Score = 35.6 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 8/153 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVF 69
A D I N +++ ++ L GM + LL +
Sbjct: 3 LFFLLIWFAICAEQDARCKQISNGLTLGAAALAIIYLALTGMTWLGSPAREALLAVTLAL 62
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +A +G DVKL+T+ A+ +F+ G ++ +++ +
Sbjct: 63 ALTLPGYALGKLGAADVKLMTALALASNSAYLLGTFIGA----GVAMATWLIIAKRAWPP 118
Query: 130 IPIFGMFVPKSFLMKNK--IPYGIAISMGGLIS 160
+ + P+ + G L+S
Sbjct: 119 TQQWVTQRYRYMNPTAPDKYPFSPFLFAGLLLS 151
>gi|146343140|ref|YP_001208188.1| putative Type II secretory pathway, prepilin signal peptidase
[Bradyrhizobium sp. ORS278]
gi|146195946|emb|CAL79973.1| putative Type II secretory pathway, prepilin signal peptidase
[Bradyrhizobium sp. ORS278]
Length = 177
Score = 35.6 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 21/166 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF------LLGMDYELIAL 60
+ S ++ +DL ++P+ ++ ++ S L+ D
Sbjct: 19 IASICIIVLLLACAGLIWTDLREGLLPDWMNALVAASGLVRTVVLTDLPQALWDIAAALA 78
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L++ + +G GDVK L + +W G + L +
Sbjct: 79 VGAALLLLRRLYLIARGRQGLGLGDVKFLMAATLWAGLPGLPILLLIATMTALVAVLFLR 138
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
+ +S + +P+G + +G L
Sbjct: 139 M---------------RGQSMTGETALPFGPFLVIGLLSVLVLQTW 169
>gi|282598561|gb|ADA83536.1| replicase polyprotein 1ab [Infectious bronchitis virus]
Length = 6630
Score = 35.6 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 4/120 (3%)
Query: 56 ELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV----AI 111
I + L ++ ++ FA IM G K + +F+ V +I
Sbjct: 2557 PNIYMQLATMFLILVVVVLIFAMVIMFEGVFKAYATIVFTIMLVWVINAFVLCVHSYNSI 2616
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
L IL V ++T+ M F +P +A G + Y + L
Sbjct: 2617 LAVILLVIYCYASLVTSRNTAIIMHCWLVFTFGLIVPMWLACCYLGFVIYMYTPLVVWCY 2676
>gi|298488975|ref|ZP_07006998.1| Conserved domain protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298156473|gb|EFH97570.1| Conserved domain protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
Length = 157
Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 4/151 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ V A D I N +++ G + + +
Sbjct: 4 LFLLLVWFVICAEQDARRKHISNGLTLGATALAAAWLAGTGTSWLGAPPLEAALALALAL 63
Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+A +G GDVKL+ + A+ +F+ + + I
Sbjct: 64 GLTLPGYALGKLGAGDVKLMAALALASDSVYLLCTFIGAGIAALTWVLLARKVQHHINQR 123
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++ +K P+ + G L++
Sbjct: 124 VARRYAYMFP--DAPDKYPFSPFLLAGLLLT 152
>gi|289751170|ref|ZP_06510548.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691757|gb|EFD59186.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length = 125
Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 2/114 (1%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
S + + + D+ +PN +++ G LL A L G +A + +
Sbjct: 12 SMLAAAVLAWMGVLCVCDVRQRRLPNWLTLPGAGVILLFAGLAGRGVPALAGAAALAGVY 71
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
++ A MG GDVKL G + FL +A ++
Sbjct: 72 LLVHLALPA--AMGAGDVKLAIGLGGLTGCFGVEVWFLAALAAPLLTAVCGVMV 123
>gi|221636278|ref|YP_002524154.1| prepilin peptidase [Thermomicrobium roseum DSM 5159]
gi|221157856|gb|ACM06974.1| prepilin peptidase [Thermomicrobium roseum DSM 5159]
Length = 241
Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 21/161 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-----YELIALH 61
+ + + L A D +I I L LL L
Sbjct: 92 LQAFRVSLSILFLALIARIDWAHHLIYLVTIIPALLLGLLLTLLASPAAFLAALVGSLAG 151
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
L+ + + + + + +G GDV L S GW + L
Sbjct: 152 ALLFALFYGLGWLLYRRPALGSGDVLLAASIGALTGWQHLLHA----------------L 195
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+ M + + + + +PYG ++ G +++
Sbjct: 196 ALGMTAAALAAVWLLARRRASRYSYLPYGSYLAGGTILALL 236
>gi|193213108|ref|YP_001999061.1| peptidase A24A prepilin type IV [Chlorobaculum parvum NCIB 8327]
gi|193086585|gb|ACF11861.1| peptidase A24A prepilin type IV [Chlorobaculum parvum NCIB 8327]
Length = 242
Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 22/165 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
++ LV AL D + ++P+ V + + +++++ + L+ + ++
Sbjct: 90 AVLLWACLSSTLVLLALIDWDTTLLPDLVVLPLGIVGMVSSYAGFTSHTLLVSTVSAAVV 149
Query: 68 VFIICFCFFAFN------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++ +AF +GGGD+KLL + A W+G F L + ++ L
Sbjct: 150 FGLLGGLAWAFQRIKGVSGVGGGDLKLLAALATWYGVIGVFYVVLLGSV----VTVIWHL 205
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
R P P+G A+ + L+ S
Sbjct: 206 VWRRFKGFDPQAEW------------PFGPALVLAALVWLVGSLY 238
>gi|218509312|ref|ZP_03507190.1| prepilin peptidase protein [Rhizobium etli Brasil 5]
Length = 51
Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+N I G+ +P S L+ KIPYGIAI++GG +++P S +F AL L
Sbjct: 2 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESL 50
>gi|197334382|ref|YP_002155267.1| hypothetical protein VFMJ11_0513 [Vibrio fischeri MJ11]
gi|197315872|gb|ACH65319.1| conserved hypothetical protein [Vibrio fischeri MJ11]
Length = 109
Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
HLL LI+ + F F FNI+ GD+K + ++ L + + G
Sbjct: 16 HLLSPLIILFVGFILFKFNIIAAGDIKYYAAMSLMIEQQYLLLVTCIILCLGGL------ 69
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
++ +PYG+AIS+G L S
Sbjct: 70 -----QAYCQYCIYKLTGNERWIERGVPYGVAISIGSLFGILAS 108
>gi|291459836|ref|ZP_06599226.1| late competence protein [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291417626|gb|EFE91345.1| late competence protein [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 235
Score = 35.6 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 7/135 (5%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-------GMDYELIALHL 62
A L+ L +A++D +IPN +VML LL + + +
Sbjct: 88 AKILLAFMVLTVSAVTDARLQIIPNPCPVVMLVGKLLIGICELIFLKAEPLALLINSFSA 147
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
L+ ++F++ + +G GDVKL ++ G ++ LF + ++
Sbjct: 148 LLIALIFLLIMAKLSGGGIGMGDVKLFSALGFLCGLAAFCITLLFSFVLCALFSIPALIM 207
Query: 123 VRMITNHIPIFGMFV 137
+ G F+
Sbjct: 208 KKKGLKDALPLGPFI 222
>gi|258514749|ref|YP_003190971.1| peptidase A24A prepilin type IV [Desulfotomaculum acetoxidans DSM
771]
gi|257778454|gb|ACV62348.1| peptidase A24A prepilin type IV [Desulfotomaculum acetoxidans DSM
771]
Length = 147
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 22/149 (14%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
L+ A++SD+ +IP+ V + + + +L +E + L ++ +F+I
Sbjct: 19 FFVALLLAASVSDIRMKIIPDGVCLGVALTGML-------TFEPVKLAGILAAALFLITA 71
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
F M GGD+KL+ ++ + G++ S + + + L + ++
Sbjct: 72 LLF--GGMDGGDIKLMAASGLVLGFSKSMAATVIGLTALLVFHGGNHIIQKLRGRTA--- 126
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYP 162
P +S+G + +Y
Sbjct: 127 ----------GKAYPLAPFLSLGCIAAYF 145
>gi|229827063|ref|ZP_04453132.1| hypothetical protein GCWU000182_02447 [Abiotrophia defectiva ATCC
49176]
gi|229788681|gb|EEP24795.1| hypothetical protein GCWU000182_02447 [Abiotrophia defectiva ATCC
49176]
Length = 170
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 22/171 (12%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL------ 60
+ +FL+ V A++ D+ ++ N I ++ + + ++ E I
Sbjct: 9 IGLVIFLLYIILSVKASIYDIKYRLVKNETYISLIFLSVSNIIRMIVETEEIDWFICFIR 68
Query: 61 ----HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
+L+ + +I N MGGGDVK + + ++ + + I+ ++
Sbjct: 69 FLTYSMLIMSVAVVIIIFVIVTNAMGGGDVKYIFCSMLFLVPEREVSVLILWFLIMFTLM 128
Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
++ + V+ K KN IP IS G+I S
Sbjct: 129 LIYGIVVQ------------YTKPDKRKNGIPMIPFISGAGIIMVIISDFI 167
>gi|260586992|ref|ZP_05852905.1| peptidase, A24 family [Blautia hansenii DSM 20583]
gi|260542676|gb|EEX23245.1| peptidase, A24 family [Blautia hansenii DSM 20583]
Length = 344
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT--AFLLGMDYELIALHLL 63
M+ + ++ V A +D+ + N+ + + + + + ++
Sbjct: 4 MLEGIMIILMLILCVQAGKTDIRDGKVYNKTLLFFGFIGIALDVLYYSAFNKTMFVPFMI 63
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW------FGWTPSFLSFLFFVAILGGILS 117
++ + F + GGD KLL ++ ++ S ++ +F V I
Sbjct: 64 NLAVMIVASLVLFYSHSFAGGDCKLLMVLTLFYPANYYISYSGSLITVVFTVGIALFFGY 123
Query: 118 VFILT 122
+++L
Sbjct: 124 IYLLA 128
>gi|289704932|ref|ZP_06501349.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Micrococcus luteus SK58]
gi|289558428|gb|EFD51702.1| peptidase, A24 (type IV prepilin peptidase) family protein
[Micrococcus luteus SK58]
Length = 167
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 8/142 (5%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-----DYE 56
+ +++S + C +DL +PNR ++ + L + D
Sbjct: 13 TATAVLWSLGLVWFAVCAGVLVRTDLREHRLPNRWTLRLALGGLAAMTGGALLAGRGDLA 72
Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW---FGWTPSFLSFLFFVAILG 113
L +L +G V ++ + +G GDVKL V+ G T + + + + G
Sbjct: 73 LCSLLGGLGYTVAMLALHVLSRGGLGMGDVKLAGGLGVYTGVLGPTAVLAAGVGAILLGG 132
Query: 114 GILSVFILTVRMITNHIPIFGM 135
+ V +L R FG
Sbjct: 133 VVAGVLVLAGRATGRTALPFGP 154
>gi|1073211|pir||D53374 type IV prepilin peptidase (EC 3.4.99.-) - Neisseria sicca
(strain LNP3265) (fragment)
Length = 98
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFII 71
LI L+ D + +P+R++ ++ LL + + G +
Sbjct: 28 LILTAILIALTFIDADTQYLPDRMTQPLIWIGLLFTLNDTFVPLHSAVWGAIAGYMSLYT 87
Query: 72 CFCFFAF 78
+
Sbjct: 88 LCAVYKL 94
>gi|145223704|ref|YP_001134382.1| apolipoprotein N-acyltransferase [Mycobacterium gilvum PYR-GCK]
gi|145216190|gb|ABP45594.1| apolipoprotein N-acyltransferase [Mycobacterium gilvum PYR-GCK]
Length = 560
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 36/124 (29%), Gaps = 11/124 (8%)
Query: 38 IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA-----FNIMGGGDVKLLTST 92
+ L + ++ L + + + L ++ + G G + L
Sbjct: 28 LPRLTAAIVAGLALCVSFPPFGWWYIAILAFAVLGWVLTRERTTVAGGAGYGLLFGLAFY 87
Query: 93 AVWFGWTPSF------LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNK 146
W L+ A+ + + + VR + F +K+
Sbjct: 88 VPLLPWISGLVGAVPWLALSVVEALFCALFGMLAVVVRRLPGWPLWFAGLWSAQEWLKST 147
Query: 147 IPYG 150
+P+G
Sbjct: 148 VPFG 151
>gi|167769287|ref|ZP_02441340.1| hypothetical protein ANACOL_00610 [Anaerotruncus colihominis DSM
17241]
gi|167668255|gb|EDS12385.1| hypothetical protein ANACOL_00610 [Anaerotruncus colihominis DSM
17241]
Length = 139
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 17/149 (11%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L A+ D IP+ + ++ + L++ V + ++
Sbjct: 4 FLFLTALAAASAVDCRKRTIPDFLCLLTAAAGLISFSPAQF--------FGVLAALPLLI 55
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
MGGGD+KL + G+ + + +L + I + +P
Sbjct: 56 AALIRPECMGGGDIKLTAAAGFVLGFWRGIWGMALGLLLAVLYFCTAMLFQKFIHHPLPA 115
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ +P G +S+G Y
Sbjct: 116 MT---------RAALPLGPFLSIGFAALY 135
>gi|120403629|ref|YP_953458.1| peptidase A24A, prepilin type IV [Mycobacterium vanbaalenii PYR-1]
gi|119956447|gb|ABM13452.1| peptidase A24A, prepilin type IV [Mycobacterium vanbaalenii PYR-1]
Length = 150
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 4/143 (2%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ + L+ D+ +PN +++ L A L G + +
Sbjct: 6 AAVAVIGVSGWLIALCAFDIRQRRLPNMLTVPGAAVILAVAALAGHGRPAALGAAALFTV 65
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP--SFLSFLFFVAILGGILSVFILTVRM 125
A MG GDVKL G +++ ++L G+L++ +
Sbjct: 66 --YATVHLLAPAAMGAGDVKLAIGLGALTGVFGVDAWVLAAVGASVLTGVLALCLRMAGA 123
Query: 126 ITNHIPIFGMFVPKSFLMKNKIP 148
M + + ++ +P
Sbjct: 124 GATVPHGPSMCLSTAAVLALALP 146
>gi|257483367|ref|ZP_05637408.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|330987590|gb|EGH85693.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012582|gb|EGH92638.1| type IV leader peptidase family protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 156
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 4/151 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ V A D I N +++ G + + +
Sbjct: 3 LFLLLVWFVICAEQDARRKHISNGLTLGAAALAAAWLAGTGTTWLGAPPLEAALALALAL 62
Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+A +G GDVKL+ + A+ +F+ + + + I
Sbjct: 63 GLTLPGYALGKLGAGDVKLMAALALASDSVYLLCTFIGAGIAVLTWVLLARKVQHHINQR 122
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ ++ +K P+ + G L++
Sbjct: 123 VARRYAYMFP--DAPDKYPFSPFLLAGLLLT 151
>gi|218296067|ref|ZP_03496836.1| peptidase A24A domain protein [Thermus aquaticus Y51MC23]
gi|218243444|gb|EED09973.1| peptidase A24A domain protein [Thermus aquaticus Y51MC23]
Length = 355
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
+ + LV A DL + +P+ ++ +L L ++ + + L+
Sbjct: 97 AFLVFAFLAFLVALAFIDLDTYELPDALTYGLLFLGLAASYFLAFPLPFRKSLDGALMAA 156
Query: 67 IVFIIC 72
+
Sbjct: 157 GGLGLV 162
>gi|150021661|ref|YP_001307015.1| peptidase A24A domain-containing protein [Thermosipho melanesiensis
BI429]
gi|149794182|gb|ABR31630.1| peptidase A24A domain protein [Thermosipho melanesiensis BI429]
Length = 232
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 24/154 (15%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ I F V A D MIP+ ++ +L F + L + L + L
Sbjct: 96 ECILLNIFIFSTVVVAYVDFKIMMIPDFSWWLLWIVSVLDLFRDTRFWYLRFVSLFIVLS 155
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+F+I + +G GD+ L+T A S
Sbjct: 156 IFLILKKIY-VEGLGEGDIYLITPIAFILNLPLSIY-----------------------H 191
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ + K +P+G IS+ G + Y
Sbjct: 192 LLLSSILALIFSLVNKKKIVPFGPFISISGYVLY 225
>gi|87311738|ref|ZP_01093853.1| probable type 4 prepilin-like proteins leader peptide processing
enzyme [Blastopirellula marina DSM 3645]
gi|87285522|gb|EAQ77441.1| probable type 4 prepilin-like proteins leader peptide processing
enzyme [Blastopirellula marina DSM 3645]
Length = 428
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 39/144 (27%), Gaps = 27/144 (18%)
Query: 36 VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--------NIMGGGDVK 87
+++ ++G + G D L LVG+ MG GDV
Sbjct: 264 LAVGLIGITAVWWIAAGSDSWQGMLSALVGMAFAGALVWLVRIFAGAALGREAMGFGDVT 323
Query: 88 LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
L+ + GW P+ F I + LT +
Sbjct: 324 LMFMIGAYAGWQPAIAIFFLAPMIACLFAVIRWLTTGDVALA------------------ 365
Query: 148 PYGIAISMGGLISYPDSYLFKVAL 171
+G + G L + F
Sbjct: 366 -FGPYLCFGTLFLFLYWPSFWQQY 388
>gi|258623897|ref|ZP_05718850.1| hypothetical protein VMB_01510 [Vibrio mimicus VM603]
gi|258583691|gb|EEW08487.1| hypothetical protein VMB_01510 [Vibrio mimicus VM603]
Length = 152
Score = 35.2 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 16/158 (10%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M ++ + + + + SD + IPN + + +L L G +
Sbjct: 1 MMTILLLQWILIAVLLYLSLAVCYSDNQNRKIPNTLVWQIGLCSVLLGILGGYIFTAS-- 58
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L V ++ F + +GGGD+KL L V + + V
Sbjct: 59 --AHALAVLLLGFLTWLSGKIGGGDIKLSFVFLFGIDPQWLILCAPLLVCLTTLQIVVMG 116
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
L ++ K IP GI +++ G
Sbjct: 117 LYAQLSDVPAY------------KKGIPLGIPLALTGW 142
>gi|325577720|ref|ZP_08147995.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Haemophilus parainfluenzae ATCC 33392]
gi|325160465|gb|EGC72591.1| leader peptidase (prepilin peptidase)/N-methyltransferase
[Haemophilus parainfluenzae ATCC 33392]
Length = 225
Score = 35.2 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 6/118 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ I + + D +I + + L A L E
Sbjct: 84 LFTLWLAITLSLIFVISWLDWHYQLISPTPCLFLFFLGLFGAHQEFSILTLSQSLESAVS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
V I++ + F+ +G GD L + L + + +
Sbjct: 144 FFSVFYIIYHLSKWFYKKEALGRGDYWLALGIGTYLTIEYLPLFLFIACLLGIIVYWI 201
>gi|320093736|ref|ZP_08025595.1| hypothetical protein HMPREF9005_0207 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319979321|gb|EFW10812.1| hypothetical protein HMPREF9005_0207 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 230
Score = 35.2 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 18/155 (11%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVML---GSFLLTAFLLGMDYELIALHLLVGLI 67
L V +A D + +PN + M + L+ L+ ++ +G++
Sbjct: 78 AILAVAMVGVLSAYVDALTHRLPNGYTAAMAVGVCAGLVGGALVSPFWKERLTGSALGVV 137
Query: 68 VFIICFCFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+++ MG GDVKL G +G + L +
Sbjct: 138 IWLAPVWLLNRLPGGMGAGDVKLAPVLGAMVG-------------SVGVEAAAAGLALAF 184
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
++ + V S K+++P G + L +
Sbjct: 185 VSAGVAALWKLVVGSAGTKSRVPMGPWMIGAALFA 219
>gi|307546237|ref|YP_003898716.1| membrane-bound serine protease (ClpP class) [Halomonas elongata DSM
2581]
gi|307218261|emb|CBV43531.1| K07403 membrane-bound serine protease (ClpP class) [Halomonas
elongata DSM 2581]
Length = 506
Score = 35.2 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 19/147 (12%)
Query: 26 DLFSAMI-----PNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
D + ++ PN V+ ++ + + + + + + F F +
Sbjct: 289 DWRTRLLAVITNPN-VAYFLMIIGFYGLIFELSNPGSLVPGTVGIISLLLALFAFQVLPV 347
Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
G +L + G + + GGI++ I +V ++ + +
Sbjct: 348 NYAGLALILVGMGLIVGEALMPSFGILGM---GGIVAFVIGSVMLMDADTLNISLPLIG- 403
Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLF 167
G+A+ GL+ + +
Sbjct: 404 ---------GVALVAAGLMLWVVTRFM 421
>gi|329848231|ref|ZP_08263259.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Asticcacaulis biprosthecum C19]
gi|328843294|gb|EGF92863.1| type 4 prepilin-like protein leader peptide-processing enzyme
[Asticcacaulis biprosthecum C19]
Length = 245
Score = 35.2 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 28/136 (20%)
Query: 28 FSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI---MGGG 84
+ +P+ ++ + L+ AFL G + + +++ + + + +G G
Sbjct: 125 KTLRLPDILTTGIAACALVLAFLSGHVVSGLIAAAVAAAVLYGVKYVLERRHGAAMLGLG 184
Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
DVKL+ + A+W + A++G ++ K
Sbjct: 185 DVKLVAALALWLNVRT--PVMVAVAAVIGLVVI-----------------------RNRK 219
Query: 145 NKIPYGIAISMGGLIS 160
+P+G I+ +
Sbjct: 220 GLMPFGPMIAAAAFVI 235
>gi|307249761|ref|ZP_07531739.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|306858176|gb|EFM90254.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4
str. M62]
Length = 108
Score = 35.2 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 44 FLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103
LL + ++ ++ +I F F N++G GDVKLL + + +
Sbjct: 2 ALLLVIIPFSYLMYGSISWFPAILCLVIGFVLFLLNVIGAGDVKLLAVLMLAVPSSFAIF 61
Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
I+ + L R + + +PYGIAIS G L +
Sbjct: 62 FLFLTACSGLLIIIIGWLFYRQT---------------IREKGLPYGIAISAGFLTTLL 105
>gi|302387185|ref|YP_003823007.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
gi|302197813|gb|ADL05384.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
Length = 140
Score = 35.2 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L AA +D+ IP + + M+ LL + +
Sbjct: 10 VLFFSLLGIAAYTDIKKREIPGILCVAMVLISLLDF--------KAVSVFGILAALPFFI 61
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + +GGGD+KL+ + + G+ + +A + I + IL +
Sbjct: 62 AAMISPSGIGGGDIKLMAAVGLVLGFWETMFGMTIGLAAVVVIHGIRILLFKKK 115
>gi|154249691|ref|YP_001410516.1| peptidase A24A domain-containing protein [Fervidobacterium nodosum
Rt17-B1]
gi|154153627|gb|ABS60859.1| peptidase A24A domain protein [Fervidobacterium nodosum Rt17-B1]
Length = 238
Score = 35.2 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 23/151 (15%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
S V I V A D ++P+ IV+L S + + L+ + +V
Sbjct: 101 SIVLNIIFTVSVPAVFIDFKKMLLPDYTWIVILISSFYSNVAHFKENILLDTFGALITLV 160
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
++ + +G GD+ L A G+ L L ++ G I S
Sbjct: 161 ILLLLKIRYKDGIGEGDIFLFPVVAFSTGFIFMPL-LLLISSVSGIIFSFL--------- 210
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
IP+G I + G I
Sbjct: 211 -------------KKNKLIPFGPFILISGYI 228
>gi|258510607|ref|YP_003184041.1| peptidase A24A prepilin type IV [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477333|gb|ACV57652.1| peptidase A24A prepilin type IV [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 147
Score = 35.2 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 1/112 (0%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
AA DL + IP ++I +L L L+ I +++ + +
Sbjct: 18 AAFHDLRTETIPWWLTICGSVVGVLLHA-LFQGVMGGLNSLIACAIWWVLAELLWRVAPI 76
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
GGGD+ LL +A + G L + + G+ V M
Sbjct: 77 GGGDLNLLAMSAAYTGLVGPVLIYFLAGIVQIGVYVVAFARGDMRLERPFAP 128
>gi|321271558|gb|ADW79647.1| IncI1 conjugal transfer prepilin peptidase PilU [Escherichia coli]
gi|332346614|gb|AEE59946.1| IncI1 conjugal transfer prepilin peptidase PilU [Escherichia coli
UMNK88]
Length = 227
Score = 35.2 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 49/132 (37%), Gaps = 1/132 (0%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ S++++ ++ ++ A++D + ++P + L + +L+ + +
Sbjct: 75 LSPSQLLYRIHAVLILSFMLQMAVTDALTGLLPGTFTRRFLIAGILSQITTDIWWLRATE 134
Query: 61 HLLVGLIVFIICFCFFAFNI-MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ +++F + + +G GD+ L+ W G + S L S +
Sbjct: 135 IVSAAIVLFCLHKLVNRHRLNIGTGDLWLIAGITAWSGLYNAIWSVLLGAGGFVLWHSTW 194
Query: 120 ILTVRMITNHIP 131
+ P
Sbjct: 195 CIKGHKEGPLGP 206
>gi|319950152|ref|ZP_08024088.1| Co/Zn/Cd cation transporter CzcD [Dietzia cinnamea P4]
gi|319436193|gb|EFV91377.1| Co/Zn/Cd cation transporter CzcD [Dietzia cinnamea P4]
Length = 296
Score = 35.2 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 5 KMVFSAVFLIPPFCLVFAAL--------SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE 56
+V + + + LV+A + +D +I + ++ V + L A+ G
Sbjct: 116 SVVAAVLNGVVGLVLVWAGVRHRSPTLRADGKH-LITDVITSVGVVVGLALAWATGWQVL 174
Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKL 88
+ + VGL + I + + MG D L
Sbjct: 175 DPIVAIGVGLNILFIGYRLVHESGMGLMDATL 206
>gi|315501064|ref|YP_004079951.1| peptidase a24a prepilin type iv [Micromonospora sp. L5]
gi|315407683|gb|ADU05800.1| peptidase A24A prepilin type IV [Micromonospora sp. L5]
Length = 258
Score = 35.2 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 45/161 (27%), Gaps = 22/161 (13%)
Query: 10 AVFLIPPFCLVFA---ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIAL 60
A L + LV+A + D + +P+R++ + + L
Sbjct: 106 AARLALAWWLVWAVPMTIVDAMAHRLPDRLTWPAAAGVWALLGVAALTGPGVDPLVRAVL 165
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L F F G GD KL GW + V
Sbjct: 166 AALALGGGFAATTLLFGRRGFGLGDAKLALGAGALLGWYGWPV-------------LVAG 212
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
L + ++ + + +P+G + +G +
Sbjct: 213 LVLALLLAGSAGVALLAARRVRWSGHLPFGPFLVLGTAATL 253
>gi|225017399|ref|ZP_03706591.1| hypothetical protein CLOSTMETH_01325 [Clostridium methylpentosum
DSM 5476]
gi|224949809|gb|EEG31018.1| hypothetical protein CLOSTMETH_01325 [Clostridium methylpentosum
DSM 5476]
Length = 148
Score = 35.2 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 3/125 (2%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ L AAL D+ IPN + ++L L+ L + L + G +
Sbjct: 9 VVFGLLLACAALWDMKEREIPNLIPAMILVCGLI---ELRPAASVAGLLVTGGPYLLAAL 65
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+GGGD+KL+ + G P L + + + + R + I +
Sbjct: 66 LTHGKTLAIGGGDIKLMGACGFVLGVWPGLLHSILSLILAVLTGVMLFGVRRQDFSSIRL 125
Query: 133 FGMFV 137
Sbjct: 126 PLAPF 130
>gi|153811263|ref|ZP_01963931.1| hypothetical protein RUMOBE_01655 [Ruminococcus obeum ATCC 29174]
gi|149832761|gb|EDM87845.1| hypothetical protein RUMOBE_01655 [Ruminococcus obeum ATCC 29174]
Length = 136
Score = 35.2 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 41 LGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP 100
+ + G + A + I ++ F F ++G GD+KL G
Sbjct: 1 MLIGFVYDLWRG-GWNGTAFFISGTGIPLVVLGWLFYFRMLGSGDIKLFCVLGGIMGPVH 59
Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
+ + GG+LS+ IL + + + + K+++
Sbjct: 60 ILWCIW-YAFLTGGLLSLAILILCGGFSQRIQYLVKYMKTYIRTG 103
>gi|160935913|ref|ZP_02083287.1| hypothetical protein CLOBOL_00806 [Clostridium bolteae ATCC
BAA-613]
gi|158441155|gb|EDP18872.1| hypothetical protein CLOBOL_00806 [Clostridium bolteae ATCC
BAA-613]
Length = 194
Score = 35.2 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 25/156 (16%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF---- 69
+ + A D+ IPNR + L + + G+ +
Sbjct: 4 ALYGIMSYCAFMDIRRYRIPNRALAAAAAAGLAVSVEAWVSGAGNVGLWAAGIGFWMQDT 63
Query: 70 ---------------------IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
F FF ++G GD+K + A FG F S +
Sbjct: 64 GFWAAAAEGAAVFIMRLMLAAAAGFPFFLLRMVGAGDIKFMALVAGCFGLERGFWSVVIG 123
Query: 109 VAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
+ + + +L I ++ + K
Sbjct: 124 LCLGAVLALGKMLREGSICQRFLYLTAYIRRLIQSK 159
>gi|210613906|ref|ZP_03289970.1| hypothetical protein CLONEX_02183 [Clostridium nexile DSM 1787]
gi|210150931|gb|EEA81939.1| hypothetical protein CLONEX_02183 [Clostridium nexile DSM 1787]
Length = 140
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 1/125 (0%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
I L++ ++SDL + IP + I+M + ++ + + +F +
Sbjct: 7 FIMLLFLLWCSISDLRTKKIPTVLLIIMSLTVIMIRLIFIRQEIAGMAGGALMGAIFWLI 66
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+ +G GD LL + ++ G + G + I+ + N
Sbjct: 67 SK-YTNQAIGYGDSWLLGNMGIYLGGISMLEVATTAFFLTGLVSLAGIVIKQWKKNVTVP 125
Query: 133 FGMFV 137
F F+
Sbjct: 126 FAPFL 130
>gi|254168123|ref|ZP_04874970.1| Oligosaccharyl transferase STT3 subunit family [Aciduliprofundum
boonei T469]
gi|197622889|gb|EDY35457.1| Oligosaccharyl transferase STT3 subunit family [Aciduliprofundum
boonei T469]
Length = 2041
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 27/141 (19%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAM-----IPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+VF+A++ I F + F + + IP V ++ L + L + + L
Sbjct: 236 LVFTAIYTIVGFLMAFPWYF-VTHRLGSWYEIPLIVILIPLFTALYFEMTSKYPWPFVFL 294
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG-----------------WTPSFL 103
+G VF + F ++ G KL++ + + SF
Sbjct: 295 AGGIGFGVFAVILNVFFPDVWG----KLVSGQGYFVHSKLYSTIAEAQPATMGVLSMSFG 350
Query: 104 SFLFFVAILGGILSVFILTVR 124
+F ++I G +++L R
Sbjct: 351 IGIFLLSITGVFYLIYLLKKR 371
>gi|169629928|ref|YP_001703577.1| hypothetical protein MAB_2844c [Mycobacterium abscessus ATCC 19977]
gi|169241895|emb|CAM62923.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length = 146
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ + + D+ +PN +++ + L +
Sbjct: 7 VAVLCWMTALSYFDIRYRRLPNWLTLPAAVVIITVGLWGRGP---SIWAGAAALTALYLA 63
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
+ MG GDVKL ST G FL
Sbjct: 64 AHLLSPRAMGAGDVKLAVSTGGLAGAFGLDAWFLAA 99
>gi|256372484|ref|YP_003110308.1| hypothetical protein Afer_1719 [Acidimicrobium ferrooxidans DSM
10331]
gi|256009068|gb|ACU54635.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM
10331]
Length = 221
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 16/154 (10%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--IALHLLVGLIVFII 71
+ V A D + IP + L + ++ L A+ + ++ +
Sbjct: 70 LAWSVAVVGATVDWQTRRIPRSLVDGALVTEVVIFGLGPHALRAVAAAIGGALAVVGAWM 129
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+ + +G GD+ LL ++ L + L +
Sbjct: 130 LVRWLSRGGLGRGDIALLGMLGAVEAPLGWWVPVLAALVAL--------------SLGAL 175
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
+ + ++++P G AI++G L++ ++
Sbjct: 176 GALWHLLRGGSHRDRLPLGPAIAVGALVALIVAH 209
>gi|317500901|ref|ZP_07959112.1| hypothetical protein HMPREF1026_01055 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897699|gb|EFV19759.1| hypothetical protein HMPREF1026_01055 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 157
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 38/132 (28%), Gaps = 1/132 (0%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ ++ A+ D+ + + + +L+ + ++ F++
Sbjct: 21 ITFLIYMIILAVMDIKRRQVHLGFLLSGIIWVILSVICERTVSTGEIIAGILAGAFFLLL 80
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
G GD L+ + G+ + G + +L +
Sbjct: 81 SKLTK-ESFGYGDSILIVIMGAFLGFWSLMSVLFMAFFMAGLFSVIMLLKTKFHKKSKFP 139
Query: 133 FGMFVPKSFLMK 144
F F+ ++
Sbjct: 140 FIPFLMAAYAGG 151
>gi|239990375|ref|ZP_04711039.1| hypothetical protein SrosN1_23913 [Streptomyces roseosporus NRRL
11379]
Length = 168
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 22/158 (13%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----L 62
+L+ V A+ D +P+ +++ + + +L +
Sbjct: 16 ELVGWLVLAPVAVLLAVVDRRVHRLPDVLTLPLAAAAVLLLGGAALLPGHAGSWTSGLLG 75
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFI 120
+ L F + N MG GDVKL + V GW + FL F + G + +
Sbjct: 76 GLALGGFYLLLFLINPNGMGFGDVKLALALGVALGWYGWTVLFLGGFAGFLFGAAYGLAL 135
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+ +R + IP+G ++ G L
Sbjct: 136 VLLRRAG---------------RRTGIPFGPFMAAGAL 158
>gi|330938305|gb|EGH41952.1| peptidase A24A, prepilin type IV [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 156
Score = 34.8 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 8/153 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI--ALHLLVGLIVF 69
A D I N +++ ++ L GM + LL +
Sbjct: 3 LFFLLIWFAICAEQDARCKQISNGLTLGAAALAIIYLALTGMTWLGSPALEALLAVTLAL 62
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +A +G DVKL+T+ A+ +F+ G ++ +++ +
Sbjct: 63 ALTLPGYALGKLGAADVKLMTALALASNSAYLLGTFIGA----GVAMATWLIVAKRAWPP 118
Query: 130 IPIFGMFVPKSFLMKNK--IPYGIAISMGGLIS 160
+ + P+ + G L+S
Sbjct: 119 TQQWVTQRYRYMNPTAPDKYPFSPFLFAGLLLS 151
>gi|331660216|ref|ZP_08361151.1| putative leader peptidase (prepilin peptidase) [Escherichia coli
TA206]
gi|331052483|gb|EGI24519.1| putative leader peptidase (prepilin peptidase) [Escherichia coli
TA206]
Length = 191
Score = 34.8 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
L ++D +P +++ + + + A L ++ + V + + F+
Sbjct: 65 LLCACTVTDALRTWLPAELTLPLAVTMIWHASLSPWGFQSALIWGAVWAAFYGGRWLFYR 124
Query: 78 F----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
+ G GD+ L + G + + FL AI G
Sbjct: 125 LQRREDTPGSGDIILAGIAGIAGGPSSA---FLIASAIAG 161
>gi|153815440|ref|ZP_01968108.1| hypothetical protein RUMTOR_01675 [Ruminococcus torques ATCC 27756]
gi|331089199|ref|ZP_08338101.1| hypothetical protein HMPREF1025_01684 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847299|gb|EDK24217.1| hypothetical protein RUMTOR_01675 [Ruminococcus torques ATCC 27756]
gi|330405751|gb|EGG85280.1| hypothetical protein HMPREF1025_01684 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 157
Score = 34.8 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 38/132 (28%), Gaps = 1/132 (0%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ ++ A+ D+ + + + +L+ + ++ F++
Sbjct: 21 ITFLIYMIILAVMDIKRRQVHLGFLLSGIIWVILSVICERTVSTGEIIAGILAGAFFLLI 80
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
G GD L+ + G+ + G + +L +
Sbjct: 81 SKLTK-ESFGYGDSILIVIMGAFLGFWSLMSVLFMAFFMAGLFSVIMLLKTKFHKKSKFP 139
Query: 133 FGMFVPKSFLMK 144
F F+ ++
Sbjct: 140 FIPFLMAAYAGG 151
>gi|254168056|ref|ZP_04874904.1| Oligosaccharyl transferase STT3 subunit family [Aciduliprofundum
boonei T469]
gi|197623099|gb|EDY35666.1| Oligosaccharyl transferase STT3 subunit family [Aciduliprofundum
boonei T469]
Length = 2041
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 27/141 (19%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAM-----IPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+VF+A++ I F + F + + IP V ++ L + L + + L
Sbjct: 236 LVFTAIYTIVGFLMAFPWYF-VTHRLGSWYEIPLIVILIPLFTALYFEMTSKYPWPFVFL 294
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG-----------------WTPSFL 103
+G VF + F ++ G KL++ + + SF
Sbjct: 295 AGGIGFGVFAVILNVFFPDVWG----KLVSGQGYFVHSKLYSTIAEAQPATMGVLSMSFG 350
Query: 104 SFLFFVAILGGILSVFILTVR 124
+F ++I G +++L R
Sbjct: 351 IGIFLLSITGVFYLIYLLKKR 371
>gi|313887140|ref|ZP_07820836.1| V-type ATPase 116kDa subunit family protein [Porphyromonas
asaccharolytica PR426713P-I]
gi|312923369|gb|EFR34182.1| V-type ATPase 116kDa subunit family protein [Porphyromonas
asaccharolytica PR426713P-I]
Length = 609
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 53/188 (28%), Gaps = 29/188 (15%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-----------LTAFL 50
S++ + +F D + I +L + + +
Sbjct: 311 NYSELDSTPLFAPFFMLFFSLCFGDAGY-----GLVIFLLATLFKRKVKGQSTKDICSLA 365
Query: 51 LGMDYELIALHLLVGLIVFIICFCFFAFNIMGG--GDVKL----LTSTAVWFGWTPSFLS 104
+ + + L+G + ++ +++G D L L +V G +
Sbjct: 366 QWLGGTTVVVGSLLGTVFGMVMPWANDGSVLGSVRNDYFLNQDNLMLLSVVLGIIQILFA 425
Query: 105 FLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIP-------YGIAISMGG 157
+ + + + + IP YG+AI+ G
Sbjct: 426 KTVAAVKIQKQRGLKYALSSYAWVIVIFALIMAVALPMAATGIPSYVTTIFYGLAIAAGL 485
Query: 158 LISYPDSY 165
++ + +S
Sbjct: 486 VVVFYNSP 493
>gi|291546615|emb|CBL19723.1| Type IV leader peptidase family [Ruminococcus sp. SR1/5]
Length = 136
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 1/108 (0%)
Query: 42 GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
L + V + V ++ F F+++G GD+KLL + G
Sbjct: 1 MIGFLIQITENGPKGGVIFLAGVAVPVLLLGI-LFIFHMIGAGDIKLLCALGGIMGPRTV 59
Query: 102 FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
++ + GI +++ I ++ + + PY
Sbjct: 60 MECIVYSLLAGAGISLAILISTGGIRRRFLYLYQYMNEFYCTGEIRPY 107
>gi|290958270|ref|YP_003489452.1| preprotein-processsing peptidase [Streptomyces scabiei 87.22]
gi|260647796|emb|CBG70901.1| putative preprotein-processsing peptidase [Streptomyces scabiei
87.22]
Length = 276
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 7/138 (5%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----L 62
AV+L+ V AL DL + +P+ +++ G L E
Sbjct: 124 ELAVWLLLAPLGVLLALVDLGAQRLPDPLTLPFAGLALTLLGGAAFVPEHAGEWRTAAYG 183
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFI 120
+ L F F +G GDVKL GW + F A++G +V +
Sbjct: 184 ALALGGFYFLFFLIRPVALGFGDVKLAVGLGAVLGWYGWGALYLGTFAGALIGSAYTVVV 243
Query: 121 LTVRMITNHIPIFGMFVP 138
+
Sbjct: 244 AVRGRAVRGQLVALGPFM 261
>gi|123443689|ref|YP_001007660.1| type IV prepilin peptidase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090650|emb|CAL13521.1| type IV prepilin peptidase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 222
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ + +L+D S +P + L + LL A G + + L+ +
Sbjct: 81 VLFVPFIYRLSLTDRLSGWLPQEFTWSCLAAGLLIAVGSGEFLSSAMTIIALLLLCGSVR 140
Query: 73 FC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ ++G GDV L+ + W GW+ + +
Sbjct: 141 IASGHYAKRELLGLGDVWLIAALGAWLGWSLALFTI 176
>gi|28572345|ref|NP_789125.1| peptidase [Tropheryma whipplei TW08/27]
gi|28410476|emb|CAD66862.1| putative peptidase [Tropheryma whipplei TW08/27]
Length = 194
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 10/155 (6%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVG 65
+ F+ +D+ +PN +++ ++ ++ + I L+
Sbjct: 29 ATLAFIAIFVSTPALFRADIRELRLPNAITLPLIAIGIVALLADQIVHPNLDIVFSALIA 88
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + F F MG GDVKL + + + + IL
Sbjct: 89 IGLSSFLFIVSIFGGMGMGDVKLSLALLLCAANLGPAFPIIAISSAFLVAFCFCILIF-- 146
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K+ + +P+G + +G +
Sbjct: 147 ------VGLFRFFKNSGRISCLPFGPFLLLGFWTT 175
>gi|239917052|ref|YP_002956610.1| type IV leader peptidase [Micrococcus luteus NCTC 2665]
gi|281414485|ref|ZP_06246227.1| type IV leader peptidase [Micrococcus luteus NCTC 2665]
gi|239838259|gb|ACS30056.1| type IV leader peptidase [Micrococcus luteus NCTC 2665]
Length = 167
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 8/140 (5%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-----DYELI 58
+ +++S + C +DL +PNR ++ + L + D L
Sbjct: 15 TAVLWSLGLVWFAVCTGVLVRTDLREHRLPNRWTLRLALGGLTMMTGGALLAGRGDLALC 74
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW---FGWTPSFLSFLFFVAILGGI 115
+L +G V ++ + +G GDVKL V+ G T + + + + G +
Sbjct: 75 SLLGGLGYTVAMLALHVLSRGGLGMGDVKLAGGLGVYTGALGPTAVLAAGVGAILLGGVV 134
Query: 116 LSVFILTVRMITNHIPIFGM 135
+ +L R FG
Sbjct: 135 AGLLVLAGRATGRTALPFGP 154
>gi|28493544|ref|NP_787705.1| hypothetical protein TWT577 [Tropheryma whipplei str. Twist]
gi|28476586|gb|AAO44674.1| unknown [Tropheryma whipplei str. Twist]
Length = 194
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 10/155 (6%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVG 65
+ F+ +D+ +PN +++ ++ ++ + I L L+
Sbjct: 29 ATLAFIAIFVSTPALFRADIRELRLPNAITLPLIAIGIVALLADQIVHPNLDIVLSALIA 88
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
+ + F F MG GDVKL + + + + IL
Sbjct: 89 IGLSSFLFIVSIFGGMGMGDVKLSLALLLCAANLGPAFPIIAISSAFLVAFCFCILIF-- 146
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ K+ + +P+G + +G +
Sbjct: 147 ------VGLFRFFKNSGRISCLPFGPFLLLGFWTT 175
>gi|11125575|emb|CAC15462.1| putative polyprenol-phosphate-mannose synthase 2 (Ppm2)
[Mycobacterium smegmatis]
Length = 594
Score = 34.8 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 34/121 (28%), Gaps = 11/121 (9%)
Query: 41 LGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF-----AFNIMGGGDVKLLTSTAVW 95
L + + L + + I + ++ + G G + L
Sbjct: 70 LSAAIGGGLALWLSFPPIGWWFTAFPGLALLGWVLTRTATTKAGGFGYGVLFGLAFYVPL 129
Query: 96 FGWTPSF------LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
W L+ F ++ G+ + + V + F + K+ P+
Sbjct: 130 LPWISGLVGAVPWLALAFAESLFCGLFELGAVVVVRLPGWPLWFATLWVAAEWAKSTFPF 189
Query: 150 G 150
G
Sbjct: 190 G 190
>gi|253574467|ref|ZP_04851808.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251846172|gb|EES74179.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 122
Score = 34.8 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 16/123 (13%)
Query: 42 GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
+ G+ AL L G + ++ + MG GDVKLLT G+
Sbjct: 1 MLLVAAPLAGGVPLWSQALGALGGGGLLLLIALLTSGKGMGMGDVKLLTVFGWVVGFPGV 60
Query: 102 FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ L + + +G +++G L+ Y
Sbjct: 61 ----------------LLALFLASAAGAAAGLLQLAWGRRRRGQTLAFGPFLAIGTLVVY 104
Query: 162 PDS 164
Sbjct: 105 MYG 107
>gi|15609688|ref|NP_217067.1| hypothetical protein Rv2551c [Mycobacterium tuberculosis H37Rv]
gi|15842089|ref|NP_337126.1| hypothetical protein MT2628 [Mycobacterium tuberculosis CDC1551]
gi|31793734|ref|NP_856227.1| hypothetical protein Mb2581c [Mycobacterium bovis AF2122/97]
gi|121638436|ref|YP_978660.1| hypothetical protein BCG_2574c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662390|ref|YP_001283913.1| hypothetical protein MRA_2580 [Mycobacterium tuberculosis H37Ra]
gi|148823747|ref|YP_001288501.1| hypothetical protein TBFG_12572 [Mycobacterium tuberculosis F11]
gi|167968838|ref|ZP_02551115.1| hypothetical protein MtubH3_12725 [Mycobacterium tuberculosis
H37Ra]
gi|215404500|ref|ZP_03416681.1| hypothetical protein Mtub0_12620 [Mycobacterium tuberculosis
02_1987]
gi|215412325|ref|ZP_03421085.1| hypothetical protein Mtub9_13352 [Mycobacterium tuberculosis
94_M4241A]
gi|215431509|ref|ZP_03429428.1| hypothetical protein MtubE_12713 [Mycobacterium tuberculosis
EAS054]
gi|215446804|ref|ZP_03433556.1| hypothetical protein MtubT_12989 [Mycobacterium tuberculosis T85]
gi|218754291|ref|ZP_03533087.1| hypothetical protein MtubG1_13044 [Mycobacterium tuberculosis GM
1503]
gi|224990930|ref|YP_002645617.1| hypothetical protein JTY_2568 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798368|ref|YP_003031369.1| hypothetical protein TBMG_01421 [Mycobacterium tuberculosis KZN
1435]
gi|254232673|ref|ZP_04926000.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254366756|ref|ZP_04982799.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551602|ref|ZP_05142049.1| hypothetical protein Mtube_14277 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260187565|ref|ZP_05765039.1| hypothetical protein MtubCP_16251 [Mycobacterium tuberculosis
CPHL_A]
gi|260201678|ref|ZP_05769169.1| hypothetical protein MtubT4_16642 [Mycobacterium tuberculosis T46]
gi|260205870|ref|ZP_05773361.1| hypothetical protein MtubK8_16396 [Mycobacterium tuberculosis K85]
gi|289444087|ref|ZP_06433831.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289448200|ref|ZP_06437944.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289553659|ref|ZP_06442869.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289575257|ref|ZP_06455484.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289746343|ref|ZP_06505721.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289754669|ref|ZP_06514047.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289758680|ref|ZP_06518058.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289762721|ref|ZP_06522099.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294994338|ref|ZP_06800029.1| hypothetical protein Mtub2_07438 [Mycobacterium tuberculosis 210]
gi|297635162|ref|ZP_06952942.1| hypothetical protein MtubK4_13620 [Mycobacterium tuberculosis KZN
4207]
gi|297732154|ref|ZP_06961272.1| hypothetical protein MtubKR_13745 [Mycobacterium tuberculosis KZN
R506]
gi|298526024|ref|ZP_07013433.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776826|ref|ZP_07415163.1| hypothetical protein TMAG_02355 [Mycobacterium tuberculosis
SUMu001]
gi|306780591|ref|ZP_07418928.1| hypothetical protein TMBG_01091 [Mycobacterium tuberculosis
SUMu002]
gi|306789953|ref|ZP_07428275.1| hypothetical protein TMDG_00265 [Mycobacterium tuberculosis
SUMu004]
gi|306794033|ref|ZP_07432335.1| hypothetical protein TMEG_03227 [Mycobacterium tuberculosis
SUMu005]
gi|306798432|ref|ZP_07436734.1| hypothetical protein TMFG_03779 [Mycobacterium tuberculosis
SUMu006]
gi|306804311|ref|ZP_07440979.1| hypothetical protein TMHG_01745 [Mycobacterium tuberculosis
SUMu008]
gi|306969850|ref|ZP_07482511.1| hypothetical protein TMIG_03346 [Mycobacterium tuberculosis
SUMu009]
gi|307080651|ref|ZP_07489821.1| hypothetical protein TMKG_02980 [Mycobacterium tuberculosis
SUMu011]
gi|307085238|ref|ZP_07494351.1| hypothetical protein TMLG_02279 [Mycobacterium tuberculosis
SUMu012]
gi|313659488|ref|ZP_07816368.1| hypothetical protein MtubKV_13759 [Mycobacterium tuberculosis KZN
V2475]
gi|1781051|emb|CAB06187.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13882370|gb|AAK46940.1| hypothetical protein MT2628 [Mycobacterium tuberculosis CDC1551]
gi|31619328|emb|CAD94766.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121494084|emb|CAL72562.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601732|gb|EAY60742.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134152267|gb|EBA44312.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506542|gb|ABQ74351.1| hypothetical protein MRA_2580 [Mycobacterium tuberculosis H37Ra]
gi|148722274|gb|ABR06899.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224774043|dbj|BAH26849.1| hypothetical protein JTY_2568 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319871|gb|ACT24474.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289417006|gb|EFD14246.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289421158|gb|EFD18359.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289438291|gb|EFD20784.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289539688|gb|EFD44266.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289686871|gb|EFD54359.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289695256|gb|EFD62685.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289710227|gb|EFD74243.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289714244|gb|EFD78256.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|298495818|gb|EFI31112.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308214753|gb|EFO74152.1| hypothetical protein TMAG_02355 [Mycobacterium tuberculosis
SUMu001]
gi|308326525|gb|EFP15376.1| hypothetical protein TMBG_01091 [Mycobacterium tuberculosis
SUMu002]
gi|308333562|gb|EFP22413.1| hypothetical protein TMDG_00265 [Mycobacterium tuberculosis
SUMu004]
gi|308337590|gb|EFP26441.1| hypothetical protein TMEG_03227 [Mycobacterium tuberculosis
SUMu005]
gi|308341255|gb|EFP30106.1| hypothetical protein TMFG_03779 [Mycobacterium tuberculosis
SUMu006]
gi|308349062|gb|EFP37913.1| hypothetical protein TMHG_01745 [Mycobacterium tuberculosis
SUMu008]
gi|308352659|gb|EFP41510.1| hypothetical protein TMIG_03346 [Mycobacterium tuberculosis
SUMu009]
gi|308361572|gb|EFP50423.1| hypothetical protein TMKG_02980 [Mycobacterium tuberculosis
SUMu011]
gi|308365192|gb|EFP54043.1| hypothetical protein TMLG_02279 [Mycobacterium tuberculosis
SUMu012]
gi|323718824|gb|EGB27980.1| hypothetical protein TMMG_02562 [Mycobacterium tuberculosis
CDC1551A]
gi|326904166|gb|EGE51099.1| hypothetical protein TBPG_02060 [Mycobacterium tuberculosis W-148]
gi|328458138|gb|AEB03561.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 139
Score = 34.8 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 2/136 (1%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
+ + + D+ +PN +++ G LL A L G +A + +
Sbjct: 1 MLAAAVLAWMGVLCVCDVRQRRLPNWLTLPGAGVILLFAGLAGRGVPALAGAAALAGVYL 60
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
++ A MG GDVKL G + FL +A ++
Sbjct: 61 LVHLALPA--AMGAGDVKLAIGLGGLTGCFGVEVWFLAALAAPLLTAVCGVMVTPWGVRT 118
Query: 130 IPIFGMFVPKSFLMKN 145
+P S
Sbjct: 119 LPHGPSMCVASLGAVG 134
>gi|331086797|ref|ZP_08335874.1| hypothetical protein HMPREF0987_02177 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409963|gb|EGG89398.1| hypothetical protein HMPREF0987_02177 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 140
Score = 34.8 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 2/122 (1%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
LV A DL +P + LL + V IV I
Sbjct: 10 FLFLVVCAAIDLKKRSLPMWLLWAGSLGVLLISLWNTRLNLFPLFQGAVPGIVLGIISWI 69
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
+G GDV ++T ++ G + + + I +V L + I +
Sbjct: 70 TR-EAVGYGDVWIITLLGIYLGIWDT-ATLVCIAFFFSSIAAVGCLVWKKFRRDTRIPFV 127
Query: 136 FV 137
Sbjct: 128 PF 129
>gi|154359872|gb|ABS79814.1| VAR2CSA [Plasmodium falciparum]
Length = 2681
Score = 34.8 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
P+ S +++ IP+G+A+++G L+ Y
Sbjct: 2642 FKGKCDCPKPLPLFSDNTSDILQKTIPFGVALALGSLLFY 2681
>gi|312621775|ref|YP_004023388.1| peptidase a24a prepilin type iv [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202242|gb|ADQ45569.1| peptidase A24A prepilin type IV [Caldicellulosiruptor
kronotskyensis 2002]
Length = 151
Score = 34.8 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
M ++ A+ D+ + IP+ + + + + + + + L+
Sbjct: 1 MQSLLSLILAVAITAIASYYDIKTRQIPDWIWALTVVLAIAIWQKNLLKNGNLMVAALIF 60
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
+ +F++ + ++GGGD+KL+++ A+ G
Sbjct: 61 ICLFLLAYY----KLLGGGDLKLISALALLVG 88
>gi|299822788|ref|ZP_07054674.1| possible prepilin peptidase [Listeria grayi DSM 20601]
gi|299816317|gb|EFI83555.1| possible prepilin peptidase [Listeria grayi DSM 20601]
Length = 247
Score = 34.8 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 5/104 (4%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
K + + +L+ L+F ++D IP R +L + + L
Sbjct: 107 KYNFSISFFYYLLLFIFLLFFTVTDYLYMYIPLRYLYFLLVILFIWNL-TNWPFYQSLLL 165
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ + F +G GD++LL + GW ++ F
Sbjct: 166 CSIFYACLYLLFH----QGIGSGDIQLLIIYSAALGWRQGYILF 205
>gi|332687205|ref|YP_004456979.1| type IV prepilin peptidase [Melissococcus plutonius ATCC 35311]
gi|332371214|dbj|BAK22170.1| type IV prepilin peptidase [Melissococcus plutonius ATCC 35311]
Length = 205
Score = 34.8 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 20/153 (13%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
S I +L+D + ++ + L L +G+ +
Sbjct: 71 SFYIYIFLLQAFLLSLTDFLYWKVEPKILYPLFLFLLSLHLFLNQTL---FWKTGIGIFL 127
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
CF +F N MG GDV LL+ ++ G + L +
Sbjct: 128 LFTCFTYFTNNSMGYGDVILLSCWSILLGHIAILHIIFLASINGLLFCIINKLLFKKNY- 186
Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
KIP+ +S+G
Sbjct: 187 ----------------RKIPFVPFLSIGLFFYL 203
>gi|291561785|emb|CBL40585.1| Type IV leader peptidase family [butyrate-producing bacterium
SS3/4]
Length = 143
Score = 34.8 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ L AA DL + I V ++T I L ++ G+ + +I
Sbjct: 3 LFFVFLGTAAWQDLRTRSISLEVLAGGAAVGIITCIWKERLPGEIVLAMIPGITLLLIGM 62
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
++G GD + + GW + + G ++
Sbjct: 63 L--TRGLLGEGDGWFFIVSGFFLGWQECVMLLISGQIFCGIFGLAIMV 108
>gi|154505639|ref|ZP_02042377.1| hypothetical protein RUMGNA_03178 [Ruminococcus gnavus ATCC 29149]
gi|153794078|gb|EDN76498.1| hypothetical protein RUMGNA_03178 [Ruminococcus gnavus ATCC 29149]
Length = 143
Score = 34.8 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 1/115 (0%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+ L ++ D+ IP + + G ++ + + VF++
Sbjct: 7 ICFGGYLCVVSMWDIRKREIPVWLIAAGGILSASLGYFHGKIPLVLMVTGALVGGVFLLI 66
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
G GD ++ T V+ G+ ++ + ++
Sbjct: 67 SRLTQ-EAFGYGDSLMIAVTGVYLGFWNVLYLLVWAYVLAAVFAGYVLIRKGFQK 120
>gi|289178707|gb|ADC85953.1| hypothetical protein BIF_02254 [Bifidobacterium animalis subsp.
lactis BB-12]
Length = 172
Score = 34.8 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 10/147 (6%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG------MDYELIALHLLVGLIVFIICF 73
+ +++DL ++P + + + G + L+ + V +
Sbjct: 25 LAISVTDLRRRIVPRPWVMAGVAVQCVVFLTAGIRSHDLWPFVCACFGLVGAVGVQLSLA 84
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+ +G GDV G+ F + G+L V + + + +
Sbjct: 85 MAIPRHALGLGDVTASGMAGFATGYFGLECYLWF--WLCMGVLGVGWVPAYSVYSRVRSR 142
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLIS 160
G ++ +P+ I+ ++
Sbjct: 143 GRTGDGVGRLR--VPFVPVIATAAALA 167
>gi|289595987|ref|YP_003482683.1| Oligosaccharyl transferase STT3 subunit [Aciduliprofundum boonei
T469]
gi|289533774|gb|ADD08121.1| Oligosaccharyl transferase STT3 subunit [Aciduliprofundum boonei
T469]
Length = 2073
Score = 34.8 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 27/141 (19%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAM-----IPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+VF+A++ I F + F + + IP V ++ L + L + + L
Sbjct: 268 LVFTAIYTIVGFLMAFPWYF-VTHRLGSWYEIPLIVILIPLFTALYFEMTSKYPWPFVFL 326
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG-----------------WTPSFL 103
+G VF + F ++ G KL++ + + SF
Sbjct: 327 AGGIGFGVFAVILNVFFPDVWG----KLVSGQGYFVHSKLYSTIAEAQPATMGVLSMSFG 382
Query: 104 SFLFFVAILGGILSVFILTVR 124
+F ++I G +++L R
Sbjct: 383 IGIFLLSITGVFYLIYLLKKR 403
>gi|332300399|ref|YP_004442320.1| V-type ATPase 116 kDa subunit [Porphyromonas asaccharolytica DSM
20707]
gi|332177462|gb|AEE13152.1| V-type ATPase 116 kDa subunit [Porphyromonas asaccharolytica DSM
20707]
Length = 609
Score = 34.8 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 53/188 (28%), Gaps = 29/188 (15%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-----------LTAFL 50
S++ + +F D + I +L + + +
Sbjct: 311 NYSELDSTPLFAPFFMLFFSLCFGDAGY-----GLVIFLLATLFKRKVKGQSTKDICSLA 365
Query: 51 LGMDYELIALHLLVGLIVFIICFCFFAFNIMGG--GDVKL----LTSTAVWFGWTPSFLS 104
+ + + L+G + ++ +++G D L L +V G +
Sbjct: 366 QWLGGTTVVVGSLLGTVFGMVMPWANDGSVLGSVRNDYFLNQDNLMLLSVVLGIIQILFA 425
Query: 105 FLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIP-------YGIAISMGG 157
+ + + + + IP YG+AI+ G
Sbjct: 426 KTVAAVKIQKQRGLKYALSSYAWVIVIFALIMAVALPMAATGIPSYVTTIFYGLAIAAGL 485
Query: 158 LISYPDSY 165
++ + +S
Sbjct: 486 VVVFYNSP 493
>gi|315301864|ref|ZP_07872889.1| sulfatase family protein [Listeria ivanovii FSL F6-596]
gi|313629767|gb|EFR97875.1| sulfatase family protein [Listeria ivanovii FSL F6-596]
Length = 619
Score = 34.8 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMI---PNRVSIVM------LGSFLLTAFLLGM 53
M+ + LI + L+ I PN +++ M L L+ F
Sbjct: 4 PQSMLERGINLILFYFLLIIGKFTFAYFQIFKDPNFLALGMDLLFIVLILGLIHLFAPVR 63
Query: 54 DYELIALHLLVGLIVFIICFCFFAF 78
+ + + + + ++ +A
Sbjct: 64 SHIYWYAGMSLFVGILMLVCVLYAR 88
>gi|255087574|ref|XP_002505710.1| predicted protein [Micromonas sp. RCC299]
gi|226520980|gb|ACO66968.1| predicted protein [Micromonas sp. RCC299]
Length = 444
Score = 34.8 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 13/125 (10%)
Query: 23 ALSDLFSAMIPNRVSIVMLGSF--LLTAFLLGMDYELIALHLLVGLIVFII-CFCFFAFN 79
+ D+ + IPN +SI S + + ELI ++ + + +N
Sbjct: 146 SYGDIAT--IPNALSIARGASGPLIAAGIVNDAPPELILAAVVAAGASDWLDGYLARRWN 203
Query: 80 IMG--------GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
G GD + S AV W + ++L + V + +
Sbjct: 204 QTGVAGSYLDPAGDKAFVASVAVALAWKGAIPAWLAACFLSRDAALVAGVAFQRARGLGW 263
Query: 132 IFGMF 136
+ +
Sbjct: 264 RWETW 268
>gi|145299829|ref|YP_001142670.1| flp pilus prepilin peptidase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|88866584|gb|ABD57352.1| FlpA [Aeromonas salmonicida subsp. salmonicida A449]
gi|142852601|gb|ABO90922.1| flp pilus prepilin peptidase [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 138
Score = 34.8 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 9/132 (6%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + + +SDLF IPN +V+ L + L L LL+GL
Sbjct: 1 MTALGQWLAILMACWCLVSDLFERRIPNLAVLVLALWALWLLPFNPLSLTLALLTLLLGL 60
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ G GD KLL +G + + L ++A+ GG+LS+ L
Sbjct: 61 FA-------YHRGWCGAGDSKLLAVC--LYGASGRWPELLLWMALSGGVLSLVCLVYARF 111
Query: 127 TNHIPIFGMFVP 138
+
Sbjct: 112 RPSPEPVTVPYG 123
>gi|330976815|gb|EGH76849.1| peptidase A24A, prepilin type IV [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 158
Score = 34.8 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 8/153 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI--ALHLLVGLIVF 69
A D I N +++ ++ L GM + LL +
Sbjct: 5 LFFLLIWFAICAEQDARCKQISNGLTLGAAALAIIYLALTGMTWLGSPALEALLAVTLAL 64
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+ +A +G DVKL+T+ A+ +F+ G ++ + + +
Sbjct: 65 ALTLPGYALGKLGAADVKLMTALALASNSAYLLGTFIGA----GVAMATWFIVAKRAWPP 120
Query: 130 IPIFGMFVPKSFLMKNK--IPYGIAISMGGLIS 160
+ + P+ + G L+S
Sbjct: 121 TQQWVTQRYRYMNPTAPDKYPFSPFLFAGLLLS 153
>gi|242310519|ref|ZP_04809674.1| bacterial Peptidase A24 N [Helicobacter pullorum MIT 98-5489]
gi|239522917|gb|EEQ62783.1| bacterial Peptidase A24 N [Helicobacter pullorum MIT 98-5489]
Length = 242
Score = 34.8 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 10/123 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ V + ++ D IP+ ++ + L ++ L G L+ + +
Sbjct: 93 ISGIVCFLLLLNFYVLSVIDWQFFEIPDSLNFLNLAFAVVFGGLFGEAKWLLDSWVESFV 152
Query: 67 IVFIICFC----------FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
F+ F ++G GD+ + + G L+ LF +
Sbjct: 153 CAFLFMGIASFLRLFVGSIFKKEVLGEGDIIVFGALGASLGIFGGSLAILFASGYALVFM 212
Query: 117 SVF 119
Sbjct: 213 LFA 215
>gi|116328641|ref|YP_798361.1| prepilin leader peptidase [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116121385|gb|ABJ79428.1| Prepilin leader peptidase [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
Length = 282
Score = 34.8 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 17/161 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-LHLLVGL 66
FS VFL L+ + L+D F + +L + + FL + L++L G
Sbjct: 122 FSLVFLFLCGHLLISCLTDAFHFSLDYENLPWILFFGITSVFLFNGKLPGLNELYVLGGF 181
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F +G GDV A+ G + F + + +L IL R
Sbjct: 182 FLVFLILFFLFPGGIGFGDVLFAPVYALIAG--HPWWMFFLNASYIPAVLLTIILRERGK 239
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ K IP G+ +G ++++ F
Sbjct: 240 SL--------------RKAPIPMGLYFGIGLMLTFLSRVFF 266
>gi|148825425|ref|YP_001290178.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
PittEE]
gi|148715585|gb|ABQ97795.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Haemophilus influenzae
PittEE]
Length = 202
Score = 34.8 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 6/110 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIAL 60
+F+ + L + D + +I + +L L A L + A
Sbjct: 84 IFAIWLGLTLLILWAISYLDWYYQLISTTPCLWLLTIGLFGADNNFSLLTLSESIKSAAS 143
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
+V ++ I ++ G GD L + + F+ ++
Sbjct: 144 FFIVFYAIYWIAKFYYGKEAFGRGDYWLAMALGSFIHLETLPHFFIISLS 193
>gi|1086137|pir||E53374 type IV prepilin peptidase (EC 3.4.99.-) pilD - Neisseria
subflava (strain LNP3260) (fragment)
Length = 97
Score = 34.8 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFII 71
LI L+ D + +P+ ++ ++ LL + + G +
Sbjct: 27 LILTAILIALTFIDADTQYLPDSLTQPLIWIGLLFNLNDTFVSLHSAVWGAIAGYMSLYT 86
Query: 72 CFCFFAF 78
+
Sbjct: 87 LCAVYKL 93
>gi|313647368|gb|EFS11820.1| type 4 prepilin-like s leader peptide-processing enzyme domain
protein [Shigella flexneri 2a str. 2457T]
gi|332749569|gb|EGJ79986.1| type IV leader peptidase family protein [Shigella flexneri K-671]
gi|332750792|gb|EGJ81199.1| type IV leader peptidase family protein [Shigella flexneri
2747-71]
gi|333012532|gb|EGK31913.1| type IV leader peptidase family protein [Shigella flexneri K-304]
Length = 54
Score = 34.8 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAV 94
+ +VG F + + + +G GDVK L +
Sbjct: 1 MFYQVCHPDGLADALWGAIVGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGA 54
>gi|291543488|emb|CBL16597.1| Type II secretory pathway, prepilin signal peptidase PulO and
related peptidases [Ruminococcus sp. 18P13]
Length = 278
Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 18/161 (11%), Positives = 49/161 (30%), Gaps = 30/161 (18%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIV 68
+ + L+ D + I R+ + + + +A L + + + +
Sbjct: 118 IICCLFFSLLIVVGFMDWNTLEIDLRILLCIALLAIPSALLTDTLTIPQRLIGAVCVSVP 177
Query: 69 FIICFCFF----------AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
F + + GD L+ ++ + G + ++ L + +
Sbjct: 178 FFLIGEISGAVIKRRTGEKVRGIELGDTLLMAASGLLVGPKVTAVAALIGIFLAAVCGLA 237
Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
+ K ++K +G +S+G +I
Sbjct: 238 Y-------------------KKITGESKFAFGPFLSIGLVI 259
>gi|315604254|ref|ZP_07879320.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313960|gb|EFU62011.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 230
Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 22/156 (14%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSI-------VMLGSFLLTAFLLGMDYELIALHLL 63
L+ +A D + +PN ++ + + + L + L
Sbjct: 78 AVLVVSMVGALSAYVDARTHRLPNAYTLVMGIGVAAGIAIGAVISPLWQERLSGSLIGAL 137
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ L+ + MGGGDVKL G +G +VF L +
Sbjct: 138 IWLVPIWVLNRL--PGGMGGGDVKLAPVLGAMVGS-------------VGMHAAVFALVL 182
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
++ + V S K+++ G + L+
Sbjct: 183 SFVSAGVAALWKIVVGSAGTKSRVAMGPWMIGSALV 218
>gi|228982428|ref|ZP_04142687.1| hypothetical protein bthur0002_55610 [Bacillus thuringiensis Bt407]
gi|228776611|gb|EEM24919.1| hypothetical protein bthur0002_55610 [Bacillus thuringiensis Bt407]
Length = 166
Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
+ I L A +DL + I ++ + V + LL L + +
Sbjct: 21 HIFIVAILLLFLFIATYTDLKNMKIYDKFNAVFFVTRLLIIILPFGITYQWTHLIGGLIG 80
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+ GGD+K + ++ G + + L I V I +
Sbjct: 81 GLFLLIPAMVLMHKMGGDIKFMFIFGMYLGGYYTIVLLLLSCLIHFIYSIVSIFIFKRQN 140
Query: 128 NHIPIFGMFV 137
+
Sbjct: 141 KKTMVPFAPF 150
>gi|194223572|ref|XP_001498309.2| PREDICTED: G protein-coupled receptor 116 [Equus caballus]
Length = 1347
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
+ +A L+ + AA D I N + + +F + F L + + ++ L L
Sbjct: 1053 TCIVNIAASLLVADIWFIVAAAID-DHHYILNE-TACVATTFFIHFFYLSVFFWMLTLGL 1110
Query: 63 LVGL-IVFII 71
++ +VFI+
Sbjct: 1111 MLFYRLVFIL 1120
>gi|323356583|ref|YP_004222979.1| type II secretory pathway, prepilin signal peptidase PulO
[Microbacterium testaceum StLB037]
gi|323272954|dbj|BAJ73099.1| type II secretory pathway, prepilin signal peptidase PulO
[Microbacterium testaceum StLB037]
Length = 152
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 37/140 (26%), Gaps = 7/140 (5%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
A+ D + +P+ + + +L + A VG
Sbjct: 8 ALSAFAVLSGVLAVVDARTRRLPDAIVLPGGAVVVLLLGAAALAAGEPARFAGVGSGALS 67
Query: 71 ICFC-----FFAFNIMGGGDVKLLTSTAVWFGWT--PSFLSFLFFVAILGGILSVFILTV 123
GGGDVKL GW + S + + GI + +L
Sbjct: 68 AFAACLAVRLARPGAFGGGDVKLAAVCGAVLGWGGLGAVASGIVLAFLAAGIGAAGVLLA 127
Query: 124 RMITNHIPIFGMFVPKSFLM 143
I + ++
Sbjct: 128 GRRGASIAFGPFLLFGAWWR 147
>gi|327412697|emb|CAX67693.1| putative prepilin peptidase (PilU) [Yersinia enterocolitica]
Length = 222
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ + +L+D S +P + L + LL A G + + L+ +
Sbjct: 81 VLFVPFIYRLSLTDRLSGWLPQEFTWSCLAAGLLIAVGSGEFLSSAMTIIALLLLCGSVR 140
Query: 73 FC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ ++G GDV L+ + W GW+ + +
Sbjct: 141 IVSGHYAKRELLGLGDVWLIAALGAWLGWSLALFTI 176
>gi|160942268|ref|ZP_02089577.1| hypothetical protein CLOBOL_07154 [Clostridium bolteae ATCC
BAA-613]
gi|158434825|gb|EDP12592.1| hypothetical protein CLOBOL_07154 [Clostridium bolteae ATCC
BAA-613]
Length = 131
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 23/149 (15%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ F L+ ++ DL IP+ VS + LL L+GLI +
Sbjct: 4 VLFFFLLLASSFVDLKRREIPDWVSGSIAALTLLHFRPE----------YLLGLIPALFF 53
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
GGGDVKL + + G + + + + + + + + +
Sbjct: 54 LAAAVRGGFGGGDVKLAAACGLVLGLPAALMGTILGLLLQLLFHLGALCVLPLFKRQVW- 112
Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ P +++G ++Y
Sbjct: 113 ------------SAYPMAPFLAIGYAVAY 129
>gi|86360432|ref|YP_472320.1| hypothetical protein RHE_PE00156 [Rhizobium etli CFN 42]
gi|86284534|gb|ABC93593.1| hypothetical protein RHE_PE00156 [Rhizobium etli CFN 42]
Length = 185
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 2/144 (1%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + A + C AA+ D IPN V+ L + A + G +
Sbjct: 1 MTYDLTLMPAAAALAVACATTAAVFDHRYGQIPNAVTYPCLLGGFMLAAIGGGLAGIGLA 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
+ I F A GGDVKL+ + G P+ ++GG ++VF
Sbjct: 61 FAGLLASGLIFIIAFAAGGCG-GGDVKLMAALGAVLGLWPAI-DVTLASLMIGGAIAVFS 118
Query: 121 LTVRMITNHIPIFGMFVPKSFLMK 144
+ R+ +
Sbjct: 119 MARRVQWGVLARTVGLFALLLPAG 142
>gi|269468751|gb|EEZ80366.1| Type II secretory prepilin signal peptidase PulO [uncultured SUP05
cluster bacterium]
Length = 254
Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 39/127 (30%), Gaps = 9/127 (7%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + ++ + L+ + D +P+ + IV++ L+ + LL +
Sbjct: 99 LDLILTIVLFYTLIVLSFIDFKFKAVPDYLLIVVVILTLMVGDWKNALIFMGGFVLLELI 158
Query: 67 IVFIICFCFFAF---------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
+ F I +G GD+ + + G + +
Sbjct: 159 LTFYIQTIKAKITKNKELENQRALGEGDIPIAGAIGGLLGIHLGISAIFLAAILALIPAV 218
Query: 118 VFILTVR 124
++ +
Sbjct: 219 YGLMVKK 225
>gi|330954318|gb|EGH54578.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae Cit 7]
Length = 190
Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGL 66
+A L+ + L+ +L D ++P+ + + +L L+ F L + G
Sbjct: 131 QAAAILVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190
>gi|269102477|ref|ZP_06155174.1| hypothetical AcrB/AcrD/AcrF family protein [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268162375|gb|EEZ40871.1| hypothetical AcrB/AcrD/AcrF family protein [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 1031
Score = 34.5 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 22/170 (12%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
+ + ++ + +V + + +MI VS + G LL+ ++ + + L
Sbjct: 864 NLLANLSLVITLMIMVVVVSFNSFRLSMIIFAVSALAAGLGLLSVWVFQYPFGFTVIIAL 923
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+GLI I + P+ + G +
Sbjct: 924 LGLIGLAINAAIVILSEFKA---------------DPAAREGNITAVVSG-----TMSCT 963
Query: 124 RMITNHIPIFGMFVPKSFLMKNKI--PYGIAISMGGLISYPDSYLFKVAL 171
R IT+ L P+ +AI+ G L++ S+ F A+
Sbjct: 964 RHITSTTITTVGGFLPLILAGGGFWPPFAVAIAGGTLLTTLLSFYFVPAM 1013
>gi|320539749|ref|ZP_08039411.1| putative conjugative transfer prepilin peptidase PilU [Serratia
symbiotica str. Tucson]
gi|320030183|gb|EFW12200.1| putative conjugative transfer prepilin peptidase PilU [Serratia
symbiotica str. Tucson]
Length = 221
Score = 34.5 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 36/160 (22%), Gaps = 16/160 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVG 65
+ L+ L S +P ++V + + FL L L
Sbjct: 65 LQGLFALVFLEFLALFTYLYAASRCLPRCFTLVFGVTGAVLRFLLSPERVLPALLTALSL 124
Query: 66 LIVFIICFCFFAFNIMGG----GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
V G GDV L+ +WF + G L
Sbjct: 125 FGVLWALRTLAYRRDGGAQCGLGDVYLMAGLGMWFSFPAVLWVISGAAVSGGLFLLA--- 181
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ P+ + I+Y
Sbjct: 182 --------RRSLHPMQWQKNDNYRSAPFAPFLCGAAAIAY 213
>gi|325663215|ref|ZP_08151665.1| hypothetical protein HMPREF0490_02406 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470669|gb|EGC73899.1| hypothetical protein HMPREF0490_02406 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 140
Score = 34.5 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 2/122 (1%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
LV A DL +P + LL + V I I
Sbjct: 10 FLFLVVCAAIDLKKRSLPMWLLWAGSLGVLLISLWNTRLNLFPLFQGAVPGIFLGIISWI 69
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
+G GDV ++T ++ G + ++ + I +V L + I +
Sbjct: 70 TR-EAVGYGDVWIITLLGIYLGIWDT-VTLVCIAFFFSSIAAVGCLVWKKFRRDTRIPFV 127
Query: 136 FV 137
Sbjct: 128 PF 129
>gi|134098634|ref|YP_001104295.1| hypothetical protein SACE_2064 [Saccharopolyspora erythraea NRRL
2338]
gi|133911257|emb|CAM01370.1| hypothetical protein SACE_2064 [Saccharopolyspora erythraea NRRL
2338]
Length = 190
Score = 34.5 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 36/128 (28%)
Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
V L + V DL + +P+ +++ L L L LV
Sbjct: 44 VPLWLGWLAVLLTACDLIARRLPDVLTLTAYPVAALLLGAADPGLLLGGLTGLVLFAGLY 103
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ + +G GDVKL S G G L V + H
Sbjct: 104 LGVRVLSPASIGPGDVKLAGSLGAVVGAVSVPAVLGCVAVAAGLTLVVAARSRGAAVAHG 163
Query: 131 PIFGMFVP 138
P +
Sbjct: 164 PAMLLPAW 171
>gi|168770548|ref|ZP_02795555.1| PilU [Escherichia coli O157:H7 str. EC4486]
gi|226201062|ref|YP_002756674.1| PilU [Escherichia coli]
gi|301030054|ref|ZP_07193008.1| peptidase, A24 family protein [Escherichia coli MS 196-1]
gi|189360542|gb|EDU78961.1| PilU [Escherichia coli O157:H7 str. EC4486]
gi|219881691|gb|ACL52061.1| PilU [Escherichia coli]
gi|299877188|gb|EFI85399.1| peptidase, A24 family protein [Escherichia coli MS 196-1]
Length = 208
Score = 34.5 bits (78), Expect = 6.3, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 46/162 (28%), Gaps = 24/162 (14%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLVGL 66
I C+ L+D S +P +I+ L S G L+ L
Sbjct: 66 LFMTIMTGCMTLMTLTDAASCRLPRPFTIMYLISGSAFRLWQGDWLTGLCSAGFWFLLLL 125
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ +G GDV L+ A+W + A G +L +
Sbjct: 126 LFRQYTSYRRKTETIGLGDVFLIAGIAIWSPPGDIPW--IVATAAGGALLYL-------- 175
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMG--GLISYPDSYL 166
+ + + ++P+G + YP
Sbjct: 176 ---------WCNRQRRITRELPFGPFLCASQYAFTFYPGGLW 208
>gi|68536111|ref|YP_250816.1| hypothetical protein jk1034 [Corynebacterium jeikeium K411]
gi|260578806|ref|ZP_05846713.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|68263710|emb|CAI37198.1| putative membrane protein [Corynebacterium jeikeium K411]
gi|258603104|gb|EEW16374.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length = 151
Score = 34.5 bits (78), Expect = 6.3, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 33/105 (31%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
M + + L + L D ++ +PN +++ + + L + L
Sbjct: 1 MNATPFLSWWPLLPFLPWAIALFLIDARTSRLPNYLTLPAIPAAGLVPLAMPGANHWALL 60
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
+ V I GGGD KL +T F +
Sbjct: 61 GGVAWWAVAFGLPLLHPRLIAGGGDAKLALTTGTLAAIVAPFGTV 105
>gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
thermophila DSM 6578]
Length = 752
Score = 34.5 bits (78), Expect = 6.4, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 36/145 (24%), Gaps = 10/145 (6%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
++ S FL+ F +L + VM + ++ + +
Sbjct: 101 DTVLVSGAFLVFVLRFPFVSLI---------TLLYVMYFGMIFSSLARYSPLSTVYAGVC 151
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
+ ++ F +G G G LF+ + L I +
Sbjct: 152 GAVGFSVVGFVLRESGSVGEGAPYFSFLLDP-VGIVAGGAVLLFYSGLGAAYLVTVIDFI 210
Query: 124 RMITNHIPIFGMFVPKSFLMKNKIP 148
+ + IP
Sbjct: 211 AKAARSEIQLKKSEERLEGIVQNIP 235
>gi|57639988|ref|YP_182466.1| signal peptidase [Thermococcus kodakarensis KOD1]
gi|57158312|dbj|BAD84242.1| archaeal signal peptidase, A24 family [Thermococcus kodakarensis
KOD1]
Length = 400
Score = 34.5 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 35 RVSIVMLGSFLLTAFLLGM---DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTS 91
R+ I +L LG+ D L L+ + F + + GDV +L +
Sbjct: 59 RIIIPSAEIGILYYLYLGLKSGDVLLALSGLIGLFVGFGLGLFLYYIGAWASGDVVILAA 118
Query: 92 TAVWFGWTP 100
+ P
Sbjct: 119 FSALLPLAP 127
>gi|257793133|ref|YP_003186531.1| peptidase A24A prepilin type IV [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479825|gb|ACV60142.1| peptidase A24A prepilin type IV [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 147
Score = 34.5 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 1/113 (0%)
Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
AA DL + IP ++I +L L + + F + + + +
Sbjct: 18 AAFHDLRTETIPWWLTIYGSVVGVLLHA-LFQGVMGGLNSFIACAVWFALAELLWRVSPI 76
Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
GGGD+ LL +A + G L +L + G+ M
Sbjct: 77 GGGDLNLLAMSAAYTGLVGPVLIYLLAGIVQIGVYVAAFARGDMRFQRPFAPA 129
>gi|116330702|ref|YP_800420.1| prepilin leader peptidase [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116124391|gb|ABJ75662.1| Prepilin leader peptidase [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 279
Score = 34.5 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 17/161 (10%)
Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-LHLLVGL 66
FS VFL L+ + L+D F + +L + + FL + L++L G
Sbjct: 119 FSLVFLFLCGHLLISCLTDAFHFSLDYENLPWILFFGITSVFLFNGKLPGLNELYVLGGF 178
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ + F +G GDV A+ G + F + + +L IL R
Sbjct: 179 FLVFLILFFLFPGGIGFGDVLFAPVYALIAG--HPWWMFFLNASYIPAVLLTIILRERGK 236
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
+ K IP G+ +G ++++ F
Sbjct: 237 SL--------------RKAPIPMGLYFGIGLMLTFLSRVFF 263
>gi|331002538|ref|ZP_08326055.1| hypothetical protein HMPREF0491_00917 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330409141|gb|EGG88597.1| hypothetical protein HMPREF0491_00917 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 207
Score = 34.5 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 25/149 (16%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--------LLGMDYELIALHLLVGLI 67
+ A D +IPN + +L + + + +L+G
Sbjct: 67 ISVALIVAGIDYREKIIPNEAVVFILSFACIFILLNVFKSTTEAPAVFIDALVAVLLGGG 126
Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
+F I N +G GD+KL+ + ++ T + + L + + +F + +
Sbjct: 127 LFAISKAISK-NGVGMGDIKLVAALGLYL-RTYALMGVLMVSLLSIALFGLFKVLTKKA- 183
Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
K++IP+ ++ G
Sbjct: 184 --------------TTKDEIPFAPFVAFG 198
>gi|291300025|ref|YP_003511303.1| putative signal transduction protein with Nacht domain
[Stackebrandtia nassauensis DSM 44728]
gi|290569245|gb|ADD42210.1| putative signal transduction protein with Nacht domain
[Stackebrandtia nassauensis DSM 44728]
Length = 1174
Score = 34.5 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 44/153 (28%), Gaps = 14/153 (9%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVG 65
+ + L + LSD P ++ + + L+ L D+ L L G
Sbjct: 997 IVVLIGLGFVSLYLLGGLSDRAYRRYPGLAALPLAPWAGLVVYRLFAEDWGPAWLQWLAG 1056
Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW-----------TPSFLSFLFFVAILGG 114
+ + + F +G V + + + + L V
Sbjct: 1057 AG--AVTYLLYCFEAVGRVLVLYRSFIGAFLPVTALSWIGLENRFDALPATLLSVGGYAF 1114
Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
+V I+ R + + + ++I
Sbjct: 1115 AATVTIVIDRYLLRRENPLRGTLAELTKRNDEI 1147
>gi|282598560|gb|ADA83535.1| replicase polyprotein 1a [Infectious bronchitis virus]
Length = 3952
Score = 34.5 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 4/120 (3%)
Query: 56 ELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV----AI 111
I + L ++ ++ FA IM G K + +F+ V +I
Sbjct: 2557 PNIYMQLATMFLILVVVVLIFAMVIMFEGVFKAYATIVFTIMLVWVINAFVLCVHSYNSI 2616
Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
L IL V ++T+ M F +P +A G + Y + L
Sbjct: 2617 LAVILLVIYCYASLVTSRNTAIIMHCWLVFTFGLIVPMWLACCYLGFVIYMYTPLVVWCY 2676
>gi|239625010|ref|ZP_04668041.1| peptidase A24A [Clostridiales bacterium 1_7_47_FAA]
gi|239521396|gb|EEQ61262.1| peptidase A24A [Clostridiales bacterium 1_7_47FAA]
Length = 140
Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 45/130 (34%), Gaps = 9/130 (6%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ L+ A+++DL ++P+ + +++ + ++ L
Sbjct: 11 AVQTIVFLLLLLLASVTDLKKRIVPDLLCMLIALTAAISFRPE---------QLWGIFSA 61
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
MGGGD+KL+ + + G + + + ++ + +
Sbjct: 62 LPFLLAAVFCGGMGGGDIKLMAAAGLVLGLPAGIFATILGLLLVLAYSVFLKICKKTQVI 121
Query: 129 HIPIFGMFVP 138
+P+
Sbjct: 122 AVPLVPFLSA 131
>gi|217076206|ref|YP_002333922.1| pilin secretion/fimbrial assembly signal peptidase, PilD
[Thermosipho africanus TCF52B]
gi|217036059|gb|ACJ74581.1| pilin secretion/fimbrial assembly signal peptidase, PilD
[Thermosipho africanus TCF52B]
Length = 232
Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 24/156 (15%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + I F ++ A D MIP+ I++ ++ L + L + +
Sbjct: 95 TEAILLNIIVFAIIPAIFIDFSIMMIPDFSWILIWVVSVIDLLLRHELWFLKTFSFITIM 154
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
I+F+I + +G GD+ L+ + S L F +I I ++
Sbjct: 155 IIFMIIKKIYK-EGLGEGDIYLIAPFSFLLIPPLSIY-LLLFSSISALIYALI------- 205
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
IP+G IS+ G Y
Sbjct: 206 ---------------KKNKIIPFGPFISISGYFLYF 226
>gi|308235925|ref|ZP_07666662.1| hypothetical protein GvagA14_06875 [Gardnerella vaginalis ATCC
14018]
gi|311114973|ref|YP_003986194.1| putative peptidase A24A, prepilin type IV [Gardnerella vaginalis
ATCC 14019]
gi|310946467|gb|ADP39171.1| possible peptidase A24A, prepilin type IV [Gardnerella vaginalis
ATCC 14019]
Length = 150
Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 9/149 (6%)
Query: 19 LVFAALSDLFSAMIPNRVSIVMLG-------SFLLTAFLLGMDYELIALHLLVGLIVFII 71
++ +DL S ++P ++ F L F L + +++
Sbjct: 1 MIAVCATDLTSRIVPRLWVVLAAFAQSAANLIFSLITFHNVNFLLRGWLFAVSVFAFYVL 60
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
+G GDV + A +F +I GI + + V I + +
Sbjct: 61 VQKLCVRGALGFGDVTCASMIAQALALFGFDCIIYWFASI--GIFGLIWILVWKICSKVC 118
Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
+ +NKIP+ ++ +I+
Sbjct: 119 LRFFRGHLVQNEQNKIPFVPVLAASAIIA 147
>gi|269955614|ref|YP_003325403.1| peptidase A24A prepilin type IV [Xylanimonas cellulosilytica DSM
15894]
gi|269304295|gb|ACZ29845.1| peptidase A24A prepilin type IV [Xylanimonas cellulosilytica DSM
15894]
Length = 160
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
A ++ L A+ D + IPNR+++ +L + ++ + V
Sbjct: 19 ATLVLIAPPLSAIAIIDARTHRIPNRLTLAVLAATVVAVAGRAFTEPGVLARAAVAAAAV 78
Query: 70 IICF-CFFAFNIMGGGDVKLLTSTAVWFGWTP 100
+ + + F +G GDVKL+ + A+ GW+
Sbjct: 79 GLFYLLLWRFADLGLGDVKLVATLALVAGWSG 110
>gi|167919163|ref|ZP_02506254.1| family A24A unassigned peptidase [Burkholderia pseudomallei BCC215]
Length = 77
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 26/74 (35%)
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ G + + F FFA +MG DVK+ W G ++ G +
Sbjct: 4 ALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLPALPRLWVVASVAAGVHALALM 63
Query: 121 LTVRMITNHIPIFG 134
L R + G
Sbjct: 64 LLTRTPPGSLGRGG 77
>gi|321271759|gb|ADW79846.1| IncI1 conjugal transfer protein PilU [Escherichia coli]
Length = 227
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 1/132 (0%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ S +++ ++ ++ A++D + ++P + L + +L+ + +
Sbjct: 75 LSSSPLIYRIHAVLILSFMLQMAVTDALTGLLPGTFTRRFLIAGILSQITTDIWWLRATE 134
Query: 61 HLLVGLIVFIICFCFFAFNI-MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ +++F + + +G GD+ L+ W G + S L S +
Sbjct: 135 IVSAAIVLFCLHKLVNRHRLNIGTGDLWLIAGITAWSGLYNAIWSVLLGAGGFVLWHSTW 194
Query: 120 ILTVRMITNHIP 131
+ P
Sbjct: 195 CIKGHKEGPLGP 206
>gi|300813229|ref|ZP_07093597.1| bacterial peptidase A24, N-terminal domain protein [Peptoniphilus
sp. oral taxon 836 str. F0141]
gi|300512682|gb|EFK39814.1| bacterial peptidase A24, N-terminal domain protein [Peptoniphilus
sp. oral taxon 836 str. F0141]
Length = 233
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 17/144 (11%)
Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
L + D + I + I ++ +L L + L+ +F+I
Sbjct: 103 LSILFLVSYCDFKTTYIYSMDIIFLIILQILFIILNHGEVLQSLNFALIISFIFLIIIIL 162
Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
MG GD++L + ++ L + G I ++F++
Sbjct: 163 TRQ--MGLGDMQLAFVSGLFANSYMDLLKIFTLSFVSGAIFAIFLIIFYKKGL------- 213
Query: 136 FVPKSFLMKNKIPYGIAISMGGLI 159
K ++P+G I++ L
Sbjct: 214 --------KTQMPFGPFIAIAILF 229
>gi|302864770|ref|YP_003833407.1| peptidase A24A prepilin type IV [Micromonospora aurantiaca ATCC
27029]
gi|302567629|gb|ADL43831.1| peptidase A24A prepilin type IV [Micromonospora aurantiaca ATCC
27029]
Length = 258
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 44/161 (27%), Gaps = 22/161 (13%)
Query: 10 AVFLIPPFCLVFA---ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIAL 60
A L + LV+A + D + +P+R++ + + + L
Sbjct: 106 AARLALAWWLVWAVPMTIVDAMAHRLPDRLTWLAAAGVWALLGVAALTGPGVDPLVRAVL 165
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L F F G GD KL GW L V L S +
Sbjct: 166 AALALGGGFAATTLLFGRRGFGLGDAKLALGAGALLGWYGWPLLVAGLVLALLLAGSAGV 225
Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
+ +P+G + +G +
Sbjct: 226 AL-------------LAARRVRWSGHLPFGPFLVLGTAATL 253
>gi|268679753|ref|YP_003304184.1| peptidase A24A domain protein [Sulfurospirillum deleyianum DSM
6946]
gi|268617784|gb|ACZ12149.1| peptidase A24A domain protein [Sulfurospirillum deleyianum DSM
6946]
Length = 243
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 22/173 (12%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
+E +V + + L+ ++ DL +P+ +S+ L TA L + L
Sbjct: 91 REPALVQALLIGSIFALLLALSIIDLRYKAVPDALSLPALIIAFCTASPL-ESLQNGLLF 149
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+ ++ + MG D +A + G L L
Sbjct: 150 MGALSLLRFLVSFLTQKEAMGEAD---------------------IIIAGIIGALLGIKL 188
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
+ I I + ++P+ +S+G I++ S + L
Sbjct: 189 GMAAIYIAALIALIAFMVVRKRGYELPFIPFLSLGLFITWLWSEPILSFMESL 241
>gi|307823211|ref|ZP_07653441.1| transglutaminase domain protein [Methylobacter tundripaludum SV96]
gi|307735986|gb|EFO06833.1| transglutaminase domain protein [Methylobacter tundripaludum SV96]
Length = 653
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 15/171 (8%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLL 63
+ VF L + + +P ++ I++L +L + G+ HL
Sbjct: 35 IPLTVFGFFCLLLSWRFIGIWKQNWLPGKLVILLLTVCGIAVLYSQHQGLFGRDAGTHLF 94
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL--SFLFFVAILGGILSVFIL 121
+ + + D+ L++ A + S L IL +
Sbjct: 95 ITALGLKLLEI--KKER----DLYLISYLAFIVAASQFLYEQSILMAAYILLVCCVLLAT 148
Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALM 172
V + + + +P I++ + +P K L
Sbjct: 149 LVCINSRTAQTLAALKTAVIITVQALP----IAVALFVLFPRVEAPKWMLF 195
>gi|307245741|ref|ZP_07527827.1| Fimbrial leader peptidase [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307259154|ref|ZP_07540884.1| Fimbrial leader peptidase [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|37929071|gb|AAO64349.1| fimbrial leader peptidase [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306853443|gb|EFM85662.1| Fimbrial leader peptidase [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306866821|gb|EFM98679.1| Fimbrial leader peptidase [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
Length = 212
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 1/128 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ V + L F + D + R + LL + + E + L
Sbjct: 70 ITDPVVALLLMILCFLSALDYCYYLTDIRYVAAVFVLALLHSVEMAYQ-ESLLFCCLFFG 128
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ + F I+G GD L + + F FL L + L ++
Sbjct: 129 MLGLCSHLIFKKEILGSGDSLLFIALSPLFSLEEVFLLLLIASFSGIAFYLFYFLVMKKT 188
Query: 127 TNHIPIFG 134
+P
Sbjct: 189 LKKLPFIP 196
>gi|317508441|ref|ZP_07966111.1| type IV leader peptidase [Segniliparus rugosus ATCC BAA-974]
gi|316253288|gb|EFV12688.1| type IV leader peptidase [Segniliparus rugosus ATCC BAA-974]
Length = 195
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 5/127 (3%)
Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
+ + LV AL+D ++PN +++ L + +G +
Sbjct: 58 VVVWWLVCLALADCSVRLLPNVLTLPGAAVVLAASAFVGRGGPAFL--GALCFAGLYAVI 115
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFG---WTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
F + MG GDVKL L L I G +L R
Sbjct: 116 HFVSPKSMGAGDVKLAFGLGALCAAVQPAAVLLVALLSSLISGVAAIAVLLWRRRAPPVG 175
Query: 131 PIFGMFV 137
G +
Sbjct: 176 VAHGASM 182
>gi|266625157|ref|ZP_06118092.1| peptidase, A24 family [Clostridium hathewayi DSM 13479]
gi|288862938|gb|EFC95236.1| peptidase, A24 family [Clostridium hathewayi DSM 13479]
Length = 135
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
+ ++ L+ A+++D+ ++P+ + +++ + ++ + I
Sbjct: 6 AVQAIVFLLLLLAASVTDIKKRVVPDLLCMLIALTAAISFHPEY---------VWGIFIA 56
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ MGGGD+KL+ + + G + + ++++ + + +
Sbjct: 57 LPFLLAAVFYGGMGGGDIKLMAAAGLVLGLPAGIAATIVGLSLVLVYSVLLKICKKTQVI 116
Query: 129 HIPIFGMFVP 138
+P+
Sbjct: 117 AVPLVPFLSA 126
>gi|296109468|ref|YP_003616417.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus infernus
ME]
gi|295434282|gb|ADG13453.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus infernus
ME]
Length = 233
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG---LIV 68
++I CL+ ++ D+ + + + + M+G L L + + I+ +L I
Sbjct: 4 YIIGLLCLILGSIQDIKKREVEDYIWLAMVGFGFLYHLFLTLKFGNISFLILFFESLFIS 63
Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103
FI+ + F GG D K L +
Sbjct: 64 FILGYFMFLL-GSGGADGKALIGIGALVPSMKMPI 97
>gi|315231463|ref|YP_004071899.1| V-type ATP synthase subunit I [Thermococcus barophilus MP]
gi|315184491|gb|ADT84676.1| V-type ATP synthase subunit I [Thermococcus barophilus MP]
Length = 659
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 18/154 (11%)
Query: 27 LFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD- 85
L + I V + ++ +L + + V +VF F FA + D
Sbjct: 482 LKNRQIKEAVLEQLSWMLIILGVILFALSMVGIGNAEVAKVVFGAGFVLFAVSEF-QSDL 540
Query: 86 ---VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
+KLL + + +FG+ ++LS+ +A+ + ++ ++ +
Sbjct: 541 PIPMKLLMTISDFFGFVGNWLSYARLMALALATSGIAMVVNIIVQMIWGLRI-------- 592
Query: 143 MKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
+P GIA+ GL+ + +F A+ L A
Sbjct: 593 --GPVPLGIAV---GLVVFIGGQIFSTAINALGA 621
>gi|19552836|ref|NP_600838.1| signal peptidase [Corynebacterium glutamicum ATCC 13032]
gi|62390507|ref|YP_225909.1| signal peptidase, membrane protein, cleaves prepilin-like proteins
[Corynebacterium glutamicum ATCC 13032]
gi|21324393|dbj|BAB99017.1| Signal peptidase, cleaves prepilin-like proteins [Corynebacterium
glutamicum ATCC 13032]
gi|41325844|emb|CAF21633.1| putative signal peptidase, membrane protein, cleaves prepilin-like
proteins [Corynebacterium glutamicum ATCC 13032]
Length = 137
Score = 34.1 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 43/140 (30%), Gaps = 7/140 (5%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
+ A+ D+ +P+ +++ LL Y L LV ++ +
Sbjct: 3 IFLVGLWCAVLAVIDIKYRRLPDVLTLPG---ALLINLWALTIYPQWMLGGLVWAGIYFL 59
Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+GGGD+KL + + + +++ +L V+ +
Sbjct: 60 TAVL--VGGIGGGDIKLALGLGTAVAALGMQALMVAIVGSSLISVLLGGIFAAVKGVKRP 117
Query: 130 IPIFGMFVPKSFLMKNKIPY 149
I + + +
Sbjct: 118 KFIPHGPSMVIASACSYVAF 137
>gi|319937917|ref|ZP_08012317.1| hypothetical protein HMPREF9488_03153 [Coprobacillus sp. 29_1]
gi|319806823|gb|EFW03462.1| hypothetical protein HMPREF9488_03153 [Coprobacillus sp. 29_1]
Length = 170
Score = 34.1 bits (77), Expect = 7.7, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
A++ + +F D N+ IV++ ++ A I L++ +
Sbjct: 3 ALYSLAVVICLFGVKEDCKERKFSNQKIIVLIVLGVMAAI----SANRIKEGLILFFTMN 58
Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
I+ A + +G D KL ++ ++ + S +F + L L + I
Sbjct: 59 ILGMFLSAAHFLGASDWKLFSALCLFIPFENISYSIVFIIMTLISTLIIKIAYTNKGYLK 118
Query: 130 IPIFGMF 136
+
Sbjct: 119 QSFADEW 125
>gi|260584949|ref|ZP_05852693.1| prepilin peptidase [Granulicatella elegans ATCC 700633]
gi|260157379|gb|EEW92451.1| prepilin peptidase [Granulicatella elegans ATCC 700633]
Length = 245
Score = 34.1 bits (77), Expect = 7.7, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL---TAFLLGMDYELI 58
E + + +F +L+DL +I + ++ ++ + L + +
Sbjct: 91 NEGEWTVLLDLWLLMSLAIFCSLTDLQEQVIYPKGLAIVGLLHIVIGLLSLLENLYFLST 150
Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
+ L + ++I+ + + + G GD L++ A+W+ L L +
Sbjct: 151 LVALGLYGGIYIVGYLLWKEEVFGLGDCYYLSTVALWYPIKEIVLIGLLSFVV 203
>gi|330959978|gb|EGH60238.1| peptidase A24A, prepilin type IV [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 156
Score = 34.1 bits (77), Expect = 7.7, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 4/151 (2%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
A D I NR+++ + F+ G + ++ +
Sbjct: 3 LFCLLVWFAVCAEQDARKKEISNRLTLGAMALAAGYLFVYGQTWLGAEPADAALALLIAL 62
Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
+A +G GDVKLL + A+ T +F+ + L V +I
Sbjct: 63 GLTLPGYALGRLGAGDVKLLAALALAANSTYLLCTFIGAGIAMLTWLIVGRSAWHLIHQG 122
Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
++ + K+ P+ + G L +
Sbjct: 123 FTQRYRYMNPAAPDKH--PFSPFLLAGLLTT 151
>gi|313884755|ref|ZP_07818510.1| bacterial peptidase A24, N-terminal domain protein [Eremococcus
coleocola ACS-139-V-Col8]
gi|312620016|gb|EFR31450.1| bacterial peptidase A24, N-terminal domain protein [Eremococcus
coleocola ACS-139-V-Col8]
Length = 225
Score = 34.1 bits (77), Expect = 7.7, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
S + + L DL IP+ I + + F + L+ + I+
Sbjct: 94 SLYYYLFYSILFLMICFDLSYQYIPDLFQIGL----FILLFYNYFTFRLLFISYHHFFIL 149
Query: 69 FIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
FI+ +F F N +GG D+KL+ V + F + +
Sbjct: 150 FILTILYFFFTNYIGGADLKLIGILCVCLPFEFIPYFFFLAASSGLCCCLI 200
>gi|325275744|ref|ZP_08141624.1| peptidase A24A prepilin type IV [Pseudomonas sp. TJI-51]
gi|324099121|gb|EGB97087.1| peptidase A24A prepilin type IV [Pseudomonas sp. TJI-51]
Length = 140
Score = 34.1 bits (77), Expect = 7.8, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 44/151 (29%), Gaps = 20/151 (13%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFI 70
L A D I N +++ L G + L IV +
Sbjct: 4 FALLVWLALCAGQDARERQIANVLTLGAATLALAWLLATGRSWLGAQGSDAALALFIVLL 63
Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
+ +A G GDVKLL + A+ ++F I G++ V VR
Sbjct: 64 LTLPGYALGQFGAGDVKLLGALALASSVAHVLVTF-----IAAGVVLVAWQLVRRGARQP 118
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
P+ + G +S
Sbjct: 119 RQKR-------------PFAPCLLAGFAVSL 136
>gi|156545776|ref|XP_001605651.1| PREDICTED: similar to GA13522-PA [Nasonia vitripennis]
Length = 1009
Score = 34.1 bits (77), Expect = 7.8, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 4/103 (3%)
Query: 6 MVFSAVFLIPPFCLV-FAALSDLFSAMIPNRVSIVMLGSF---LLTAFLLGMDYELIALH 61
M++ + L L+ L ++ +++ + A+ I
Sbjct: 17 MLWKGILLCTAIFLITVINYYGLMFYILFGLLTVCGTSFGPAIIFYAYTRLSPTYPIGWK 76
Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104
++ F + + FN++ LLT + G T
Sbjct: 77 YVLLSTTFFLVAWLYYFNLLFYVFYGLLTVCGMLIGPTVVLYI 119
>gi|162421658|ref|YP_001604874.1| type IV prepilin peptidase family protein [Yersinia pestis Angola]
gi|165925130|ref|ZP_02220962.1| type IV prepilin peptidase family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|166008875|ref|ZP_02229773.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
str. E1979001]
gi|167398990|ref|ZP_02304514.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|162354473|gb|ABX88421.1| type IV prepilin peptidase family [Yersinia pestis Angola]
gi|165923330|gb|EDR40481.1| type IV prepilin peptidase family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992214|gb|EDR44515.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
str. E1979001]
gi|167051494|gb|EDR62902.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 93
Score = 34.1 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ +++ ++ I + F FN+MGGGDVKL+T + S ++ + G ++ V
Sbjct: 5 VSIIIPIVALFIGYIIFHFNVMGGGDVKLITVLLLALTAEQSLNFIIYTAVMGGVVMVVG 64
Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
+L R + K +PY +AI+ G L
Sbjct: 65 LLINR---------------VDIQKRGVPYAVAITAGFL 88
>gi|314936233|ref|ZP_07843580.1| type III leader peptidase family protein [Staphylococcus hominis
subsp. hominis C80]
gi|313654852|gb|EFS18597.1| type III leader peptidase family protein [Staphylococcus hominis
subsp. hominis C80]
Length = 229
Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 50/141 (35%), Gaps = 8/141 (5%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ ++F++ L+ +L+D+ + I + + ++ + + L + + + +
Sbjct: 96 INYSLFILTCLMLITMSLTDIQTLTINSNLILIFFIVGIYISSLHLISF--------IFI 147
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ F +G GD+ LL+ ++++ + L AI +
Sbjct: 148 FFLLHTFYLLNSKSIGYGDILLLSILSIFYTYEFMLHLILLTCAIGLMFYIIMFRFKIRK 207
Query: 127 TNHIPIFGMFVPKSFLMKNKI 147
IP + N I
Sbjct: 208 IPLIPFISISYILLINFSNNI 228
>gi|46143866|ref|ZP_00204585.1| COG1989: Type II secretory pathway, prepilin signal peptidase PulO
and related peptidases [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208353|ref|YP_001053578.1| fimbrial leader peptidase [Actinobacillus pleuropneumoniae L20]
gi|126097145|gb|ABN73973.1| fimbrial leader peptidase [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 212
Score = 34.1 bits (77), Expect = 8.2, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 1/128 (0%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ V + L F + D + R + LL + + E + L
Sbjct: 70 IADPVVALLLMILCFLSALDYCYYLTDIRYVAAVFVLALLHSVEMAYQ-ESLLFCCLFFG 128
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
++ + F I+G GD L + + F FL L + L ++
Sbjct: 129 MLGLCSHLIFKKEILGSGDSLLFIALSPLFSLEEVFLLLLIASFSGIAFYLFYFLVMKKT 188
Query: 127 TNHIPIFG 134
+P
Sbjct: 189 LKKLPFIP 196
>gi|319785508|ref|YP_004144984.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171396|gb|ADV14934.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 164
Score = 34.1 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 20/142 (14%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-----GMDYELIALHLLVGLIVFIICFC 74
+++D +IP+ +++ + G L + A + F
Sbjct: 20 CAISIADFRRQVIPDGLNLALAGIGLAYQVATDANGLPVHILFAAATFAAAWAIRRGHFL 79
Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
+G GDVK+L + A W + A + ++
Sbjct: 80 MTGRIGLGLGDVKMLAAAACWISPLLLPVLLFIASASALLFVGGHVVATG---------- 129
Query: 135 MFVPKSFLMKNKIPYGIAISMG 156
K ++ +G I++G
Sbjct: 130 -----PAAAKARVAFGPFIAIG 146
>gi|119960947|ref|YP_947078.1| type IV leader peptidase family protein [Arthrobacter aurescens
TC1]
gi|119947806|gb|ABM06717.1| putative type IV leader peptidase family protein [Arthrobacter
aurescens TC1]
Length = 183
Score = 34.1 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 48/153 (31%), Gaps = 21/153 (13%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-------------------LT 47
+ +A L V + D+ S ++PNR+ +
Sbjct: 18 LVAAACLYFMVMAVRLTVIDIRSHLLPNRIVFPSYAVAGVLLLAAALLAYFADAPTEGAS 77
Query: 48 AFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSF 105
+L L + L +F MG GDVKL ++ G+ +
Sbjct: 78 GAVLFGVPGLSVIAGGAVLWLFYFVLRLVHPPGMGFGDVKLAGVLGLYLGYLGWSHIFAG 137
Query: 106 LFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
F +LGG+ S+ IL R T I
Sbjct: 138 TFAAFLLGGLWSLGILVARRGTLRSAIPFGPFM 170
>gi|254389701|ref|ZP_05004926.1| hypothetical protein SSCG_02253 [Streptomyces clavuligerus ATCC
27064]
gi|197703413|gb|EDY49225.1| hypothetical protein SSCG_02253 [Streptomyces clavuligerus ATCC
27064]
Length = 166
Score = 34.1 bits (77), Expect = 8.4, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 20/150 (13%)
Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFIIC 72
C + AL DL +P+ +++ L + E +L ++ ++
Sbjct: 29 LTACGITLALIDLAVQRLPDVLTLPACAGTFLLLAGAALAGEPGSLGRATAAAAVLTLVF 88
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSVFILTVRMITNHI 130
A +G GDVKL + GW+ +LG + +V +L
Sbjct: 89 LLLAAVAGLGLGDVKLAPAVGALLGWSSWTGLWWGAAAGFVLGAVCAVILLAAGR----- 143
Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
++++ +G + G L
Sbjct: 144 -----------DRRSQVAFGPFMVAGALAV 162
>gi|72382032|ref|YP_291387.1| hypothetical protein PMN2A_0192 [Prochlorococcus marinus str.
NATL2A]
gi|72001882|gb|AAZ57684.1| hypothetical protein PMN2A_0192 [Prochlorococcus marinus str.
NATL2A]
Length = 161
Score = 34.1 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 29/170 (17%)
Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD----------- 54
M+ + I + L ++ D+ + +I I+ S ++ LG+
Sbjct: 1 MIIISFTFILLYILFSISIEDINTMLISESKLIIFALSGIIYLACLGLSNDKIDITDLIT 60
Query: 55 --YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
+ + ++ + I + F N +G GD+KL + + +W G SFLS +
Sbjct: 61 NNSLSMIIIFIIMYSISYISYKIFGINSLGLGDIKLSSISTIWLGIEFSFLSLCISFLLS 120
Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
+T R I P+ +S+G S+
Sbjct: 121 AIYSLHGKITKRFIPFEQY----------------PFAPFLSIGIFSSWI 154
>gi|227539621|ref|ZP_03969670.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
spiritivorum ATCC 33300]
gi|227240534|gb|EEI90549.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
spiritivorum ATCC 33300]
Length = 1521
Score = 34.1 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 28/80 (35%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
S + + F +VF L D S +IP V L L +LG L+ L L
Sbjct: 341 SVITTLIEAFLLVFLVVFIFLQDFRSTLIPALAVPVCLIGALFFMQMLGFSINLLTLFAL 400
Query: 64 VGLIVFIICFCFFAFNIMGG 83
V I ++ +
Sbjct: 401 VLAIGIVVDNAIVVVEAVYA 420
>gi|260587083|ref|ZP_05852996.1| peptidase A24A, prepilin type IV [Blautia hansenii DSM 20583]
gi|260542573|gb|EEX23142.1| peptidase A24A, prepilin type IV [Blautia hansenii DSM 20583]
Length = 152
Score = 34.1 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
D + N +V + + L L+ ++ F F F ++G GD
Sbjct: 2 DFLMERVVNGFIVVFFLTGFFWQ-MGANGIAGTLSGGLGLLLPCVLLFPLFYFRMLGAGD 60
Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
+KL + ++ G T F L + + G + F++
Sbjct: 61 IKLFSGLGIFLGVTAVFKLILCSLFLGGLLSFAFLI 96
>gi|324020734|gb|EGB89953.1| peptidase, A24 family protein [Escherichia coli MS 117-3]
Length = 218
Score = 34.1 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 49/132 (37%), Gaps = 1/132 (0%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ S++++ ++ ++ A++D + ++P + L + +L+ + +
Sbjct: 66 LSPSQLLYRIHAVLILSFMLQMAVTDALTGLLPGTFTRRFLIAGILSQITTDIWWLRATE 125
Query: 61 HLLVGLIVFIICFCFFAFNI-MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ +++F + + +G GD+ L+ W G + S L S +
Sbjct: 126 IVSAAIVLFCLHKLVNRHRLNIGTGDLWLIAGITAWSGLYNAIWSVLLGAGGFVLWHSTW 185
Query: 120 ILTVRMITNHIP 131
+ P
Sbjct: 186 CIKGHKEGPLGP 197
>gi|307313392|ref|ZP_07593015.1| peptidase A24A prepilin type IV [Escherichia coli W]
gi|306906814|gb|EFN37324.1| peptidase A24A prepilin type IV [Escherichia coli W]
gi|315063756|gb|ADT78082.1| Type IVB thin prepilin peptidase [Escherichia coli W]
Length = 218
Score = 34.1 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 49/132 (37%), Gaps = 1/132 (0%)
Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
+ S++++ ++ ++ A++D + ++P + L + +L+ + +
Sbjct: 66 LSPSQLLYRIHAVLILSFMLQMAVTDALTGLLPGTFTRRFLIAGILSQITTDIWWLRATE 125
Query: 61 HLLVGLIVFIICFCFFAFNI-MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
+ +++F + + +G GD+ L+ W G + S L S +
Sbjct: 126 IVSAAIVLFCLHKLVNRHRLNIGTGDLWLIAGITAWSGLYNAIWSVLLGAGGFVLWHSTW 185
Query: 120 ILTVRMITNHIP 131
+ P
Sbjct: 186 CIKGHKEGPLGP 197
>gi|14590360|ref|NP_142426.1| hypothetical protein PH0446 [Pyrococcus horikoshii OT3]
gi|3256849|dbj|BAA29532.1| 394aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 394
Score = 34.1 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 38 IVMLGSFLLTAFLLGM---DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAV 94
I ++ +L LG+ + + ++ F I + + GDV +L + +
Sbjct: 55 IPIVELGILYNLFLGVKGDNLIQALSPFIGLVVGFAIGYFLYYTGGWASGDVIILGAYSA 114
Query: 95 WFGWTPS 101
+ P+
Sbjct: 115 LLPFAPA 121
>gi|290559791|gb|EFD93115.1| hypothetical protein BJBARM5_0125 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 782
Score = 34.1 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 20/173 (11%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
V AV L LV S L + N IV+ L+ L + +++ L+ +
Sbjct: 79 VAIAVILGAISFLVLYTNSVLLHFFL-NTF-IVLAFIGLILGI-LALVKSPMSVRLMGLI 135
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS-FLSFLFFVAILGGILSVFILTVRM 125
+ + F D L + + L + + I+ + + +R
Sbjct: 136 AALFLIYILF------ANDTGLTNAVNGFLHINILSILPIILGAVSILVIIVLILRGIRN 189
Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY--LFKVALMGLSA 176
+ + L+ IP G S+ S L +A++ + A
Sbjct: 190 HKSLPLRVVLAFILFLLITLIIP--------GFASFFFSPIVLIPLAIVIIVA 234
>gi|241190965|ref|YP_002968359.1| hypothetical protein Balac_0936 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196371|ref|YP_002969926.1| hypothetical protein Balat_0936 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|240249357|gb|ACS46297.1| hypothetical protein Balac_0936 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250925|gb|ACS47864.1| hypothetical protein Balat_0936 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295793954|gb|ADG33489.1| hypothetical protein BalV_0901 [Bifidobacterium animalis subsp.
lactis V9]
Length = 152
Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 10/147 (6%)
Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG------MDYELIALHLLVGLIVFIICF 73
+ +++DL ++P + + + G + L+ + V +
Sbjct: 5 LAISVTDLRRRIVPRPWVMAGVAVQCVVFLTAGIRSHDLWPFVCACFGLVGAVGVQLSLA 64
Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
+ +G GDV G+ F + G+L V + + + +
Sbjct: 65 MAIPRHALGLGDVTASGMAGFATGYFGLECYLWF--WLCMGVLGVGWVPAYSVYSRVRSR 122
Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLIS 160
G ++ +P+ I+ ++
Sbjct: 123 GRTGDGVGRLR--VPFVPVIATAAALA 147
>gi|167894497|ref|ZP_02481899.1| family A24A unassigned peptidase [Burkholderia pseudomallei 7894]
Length = 71
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%)
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ G + + F FFA +MG DVK+ W G ++ G +
Sbjct: 4 ALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLPALPRLWVVASVAAGVHALALM 63
Query: 121 LTVRMIT 127
L R
Sbjct: 64 LLTRTPP 70
>gi|167719790|ref|ZP_02403026.1| family A24A unassigned peptidase [Burkholderia pseudomallei DM98]
Length = 70
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%)
Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
L+ G + + F FFA +MG DVK+ W G ++ G +
Sbjct: 4 ALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLPALPRLWVVASVAAGVHALALM 63
Query: 121 LTVRMIT 127
L R
Sbjct: 64 LLTRTPP 70
>gi|269123025|ref|YP_003305602.1| hypothetical protein Smon_0240 [Streptobacillus moniliformis DSM
12112]
gi|268314351|gb|ACZ00725.1| hypothetical protein Smon_0240 [Streptobacillus moniliformis DSM
12112]
Length = 136
Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 41/116 (35%)
Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
L++ + D I +R +++ + + + + I +F
Sbjct: 7 LMLLYISYVDFVEGYIYDRDLVILFIFLYFSTTSGIYSSYVGMGIFSLPFFILWILESYF 66
Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
F I+G GD+KL+ ++FG F F+ + L I+ + P
Sbjct: 67 NFEIIGMGDIKLMLIFGMYFGIKDMHFIFTFYEIMYFSSLIYAIILRKKYVPFAPA 122
>gi|197302286|ref|ZP_03167345.1| hypothetical protein RUMLAC_01013 [Ruminococcus lactaris ATCC
29176]
gi|197298717|gb|EDY33258.1| hypothetical protein RUMLAC_01013 [Ruminococcus lactaris ATCC
29176]
Length = 150
Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 1/125 (0%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
+I L+ + SD+ + V ++ S L+ + G++ ++ +F+
Sbjct: 10 VIMGVYLISLSYSDMKRRKLSVGVIVLGFLSALVFQAITGIESWRAVAGGILTGFLFMGI 69
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
+G GD L+ + G + L + + + ++ + +
Sbjct: 70 SRLTE-EKIGYGDSLLIIVLGTFLGMWKLLILLLGAFGLAAAVSILLMIKRKFTRKSMIP 128
Query: 133 FGMFV 137
F F+
Sbjct: 129 FVPFL 133
>gi|300773769|ref|ZP_07083638.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759940|gb|EFK56767.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
spiritivorum ATCC 33861]
Length = 1521
Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 28/80 (35%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
S + + F +VF L D S +IP V L L +LG L+ L L
Sbjct: 341 SVITTLIEAFLLVFLVVFIFLQDFRSTLIPALAVPVCLIGALFFMQMLGFSINLLTLFAL 400
Query: 64 VGLIVFIICFCFFAFNIMGG 83
V I ++ +
Sbjct: 401 VLAIGIVVDNAIVVVEAVYA 420
>gi|49658867|emb|CAF28493.1| putative cysteine-type peptidase [Yersinia pseudotuberculosis]
Length = 222
Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
++ + +L+D S +P + L + LL A + + LI +
Sbjct: 81 MLFVPFVYRLSLTDRLSGWLPQEFTWSFLAAGLLVAAGNDELLSHSMTAIALLLICGSVR 140
Query: 73 FC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
+ ++G GDV T+ W W + L
Sbjct: 141 IVSGYYAQSEVLGLGDVWFATAIGAWLAWPLALLVLCV 178
>gi|255316495|ref|ZP_05358078.1| hypothetical protein CdifQCD-7_19202 [Clostridium difficile
QCD-76w55]
Length = 161
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 1/129 (0%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
V + L+FA+ SD I ++ + + ++ FL L ++ + F
Sbjct: 19 IVVITLTLFLLFASYSDFKYLKIYHKFNFIFFLLRIVFVFLPISSLPLTLSNINGVIFGF 78
Query: 70 IICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
+ + F + GGD++ ++ ++ G+ L + L V +
Sbjct: 79 CLMYIPAMFCGVSKGGDIRFISILGLYLGFPLLLNMLLITYCSIIIYLIVRKFIFKKNVT 138
Query: 129 HIPIFGMFV 137
++ I
Sbjct: 139 NLGIPLAPF 147
>gi|294636957|ref|ZP_06715280.1| putative type IV prepilin leader peptidase [Edwardsiella tarda ATCC
23685]
gi|291089826|gb|EFE22387.1| putative type IV prepilin leader peptidase [Edwardsiella tarda ATCC
23685]
Length = 223
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 30/116 (25%), Gaps = 20/116 (17%)
Query: 48 AFLLGMDYELIALHLLVGLIVFIICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFL 103
A VG ++ + F +GGGD KL+ + W G +
Sbjct: 113 ASYRPAALPDAVFGAAVGYLLLWLVAWGFWCWRGIEGLGGGDAKLVAALGAWVGASRLPT 172
Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
A L + R P+G + + GL
Sbjct: 173 LL--LAACLLALAGFAWRAWRQGGLVPYPA--------------PFGPPLVLAGLW 212
>gi|84385707|ref|ZP_00988738.1| putative membrane protein [Vibrio splendidus 12B01]
gi|84379687|gb|EAP96539.1| putative membrane protein [Vibrio splendidus 12B01]
Length = 147
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 16/158 (10%)
Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
+ + + C + +D++ + +R I+++ +++ + + L
Sbjct: 4 LKIFLSIAISICNLIVFYNDIYFRTVKHRFIIIIIILGVISLVFSNN----VIWQIGASL 59
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
I+F + F + NI+GGGDVKL+ + + S ++ + G + + +
Sbjct: 60 IIFCVFFMLWMMNIIGGGDVKLIGALFIGIAPEYSIIALATAGILGGVQILLMWV----- 114
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
+ N IPY I + + G + S
Sbjct: 115 -------SSLITHKDPFSNGIPYTIPLGLSGWFFFTLS 145
>gi|305667875|ref|YP_003864349.1| type IV pilus prepilin protein [Escherichia coli]
gi|304655624|emb|CBM42293.1| type IV pilus prepilin protein [Escherichia coli]
Length = 208
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 24/162 (14%)
Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLVGL 66
I C+ L+D S +P +I+ L S G L+ L
Sbjct: 66 LFMTIMTGCMTLMTLTDAASCRLPRPFTIMYLISGSAFRLWQGDWLTGLCSAGFWFLLLL 125
Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
+ +G GDV L+ A+W + A G +L +
Sbjct: 126 LFRQYTSYRRKTETIGLGDVFLIAGIAIWSPPGDIPW--IVATAAGGALLYL-------- 175
Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMG--GLISYPDSYL 166
+ + ++P+G + YP
Sbjct: 176 ---------RCNRQRRITRELPFGPFLCASQYAFTFYPGGLW 208
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.318 0.154 0.412
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,601,086,688
Number of Sequences: 14124377
Number of extensions: 53808828
Number of successful extensions: 1195366
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 3343
Number of HSP's successfully gapped in prelim test: 26461
Number of HSP's that attempted gapping in prelim test: 1160125
Number of HSP's gapped (non-prelim): 51862
length of query: 176
length of database: 4,842,793,630
effective HSP length: 129
effective length of query: 47
effective length of database: 3,020,748,997
effective search space: 141975202859
effective search space used: 141975202859
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.6 bits)
S2: 77 (34.1 bits)