RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type
IV [Candidatus Liberibacter asiaticus str. psy62]
(176 letters)
>gnl|CDD|34567 COG4960, CpaA, Flp pilus assembly protein, protease CpaA
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 168
Score = 91.4 bits (227), Expect = 1e-19
Identities = 65/169 (38%), Positives = 92/169 (54%), Gaps = 2/169 (1%)
Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
M+ +++FLI P LVFAA SD+ S IPNR+ +V+L +F + A + GM L L
Sbjct: 1 MDMIIASLFLIFPVLLVFAAYSDIRSRTIPNRLVLVLLLAFAILAPVAGMPLAGAGLSLA 60
Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
I + F FA +MGGGDVKLL +W G + L FL + ++ GG+L+V IL +
Sbjct: 61 GAAIALALGFGLFALGVMGGGDVKLLAVLGLWLGPLQA-LYFLLYTSVAGGVLTVAILLL 119
Query: 124 RMITNHIPIFGMFVPKSFLMKNK-IPYGIAISMGGLISYPDSYLFKVAL 171
R + F + L IPYG+AI++G L + P S L AL
Sbjct: 120 RRVDLSAAAFKAPWLRRLLTPKGSIPYGVAIALGALAALPISPLMVSAL 168
>gnl|CDD|144901 pfam01478, Peptidase_A24, Type IV leader peptidase family.
Peptidase A24, or the prepilin peptidase as it is also
known, processes the N-terminus of the prepilins. The
processing is essential for the correct formation of the
pseudopili of type IV bacterial protein secretion. The
enzyme is found across eubacteria and archaea.
Length = 103
Score = 44.1 bits (105), Expect = 2e-05
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
L+ L+ +L DL + ++PNR+++ +L LL A LLG+ + LL L F++
Sbjct: 1 LLLLSLLLLLSLIDLRTRLLPNRLTLPLLWLGLLFALLLGLLS--LLDALLGALAGFLLL 58
Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
F + MGGGDVKLL + W GW L L ++LGG+ ++
Sbjct: 59 FLLYLKEGMGGGDVKLLAALGAWLGWQALLL-LLLLASLLGGLYAL 103
>gnl|CDD|37231 KOG2020, KOG2020, KOG2020, Nuclear transport receptor CRM1/MSN5
(importin beta superfamily) [Nuclear structure,
Intracellular trafficking, secretion, and vesicular
transport].
Length = 1041
Score = 27.3 bits (60), Expect = 2.6
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV--GLIVFIICFCFFAF 78
A + IP + ++ + T ++ D++ H L L+ ++ FCF AF
Sbjct: 790 NATIVPKLGEFIPAELPLINIAVLECTLEMINKDFQEYPEHRLNFLLLLEALLLFCFPAF 849
Query: 79 NIMGGGDVKLLTSTAVW 95
+ + VKL++ + VW
Sbjct: 850 SELPADQVKLVSDSIVW 866
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 27.2 bits (60), Expect = 2.6
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 85 DVKLLTSTAVWF--GWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
D++ T T + G S +S + F IL + T+ + IP + ++
Sbjct: 157 DIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWA 211
>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
(glycosyltransferases) [Cell wall/membrane/envelope
biogenesis].
Length = 862
Score = 26.9 bits (59), Expect = 3.6
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 18/131 (13%)
Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVM-------LGSF--LLTAFLLGMDYELIALHL 62
F + F L+ + +++ + N I++ F LL A G Y L
Sbjct: 640 FSMANFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFSLFMQLLGARPRGNVYMLAMSLY 699
Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
V +I ++C A + G+ +S L F + G+ V+IL
Sbjct: 700 SVLIIYSLLCAGVLAPASL-------FEGLLGTSGFIAIIISPLEFHMLTPGV--VYILL 750
Query: 123 VRMITNHIPIF 133
+ +PI+
Sbjct: 751 LPSWYFVLPIY 761
>gnl|CDD|36528 KOG1314, KOG1314, KOG1314, DHHC-type Zn-finger protein [General
function prediction only].
Length = 414
Score = 26.9 bits (59), Expect = 3.6
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 19/78 (24%)
Query: 97 GWT--PSFLSFLFFVAILGGILSVFILTVRMITN------------HIPIFGMFVPKSFL 142
GW FL FL F +I+G I IL H+PI F S +
Sbjct: 130 GWANHAYFLRFLLF-SIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLPIV-FFTLSSLI 187
Query: 143 MKNKIPYGIAISMGGLIS 160
+ + + +++G +++
Sbjct: 188 A---LVFSLGLAIGVVLA 202
>gnl|CDD|36576 KOG1362, KOG1362, KOG1362, Choline transporter-like protein [Lipid
transport and metabolism].
Length = 577
Score = 26.0 bits (57), Expect = 6.1
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 32 IPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
I + + I ++ S + T L + I + L++ ++ I FC+F + I+ V +
Sbjct: 152 ILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIG 211
Query: 90 TSTAVWFGWTPSFLSFLFFVAI-LGGILSVFILTVRMITNHIPI 132
+++ F + L+ L V I L I V +L + + IP+
Sbjct: 212 FTSS-LFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPL 254
>gnl|CDD|37513 KOG2302, KOG2302, KOG2302, T-type voltage-gated Ca2+ channel,
pore-forming alpha1I subunit [Inorganic ion transport and
metabolism, Signal transduction mechanisms].
Length = 1956
Score = 25.4 bits (55), Expect = 7.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 64 VGLIVFIICFCFFAFNIMG 82
+G IV I C F F I+G
Sbjct: 1260 IGNIVLICCAFFIIFGILG 1278
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.337 0.149 0.463
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,262,014
Number of extensions: 133346
Number of successful extensions: 1234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1172
Number of HSP's successfully gapped: 321
Length of query: 176
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,383,754
Effective search space: 390154106
Effective search space used: 390154106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 54 (24.5 bits)