RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type
IV [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)



>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional.
          Length = 406

 Score = 27.5 bits (61), Expect = 1.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMK-----NKI-PY--GIAISMGGLISYPDS 164
           GG++S   L  + I  ++ I G+    S  MK      KI  +  G++I  G  + YP  
Sbjct: 184 GGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGD 243

Query: 165 YLFKVA 170
             F +A
Sbjct: 244 LTFDIA 249


>gnl|CDD|163113 TIGR03030, CelA, cellulose synthase catalytic subunit
           (UDP-forming).  Cellulose synthase catalyzes the
           beta-1,4 polymerization of glucose residues in the
           formation of cellulose. In bacteria, the substrate is
           UDP-glucose. The synthase consists of two subunits (or
           domains in the frequent cases where it is encoded as a
           single polypeptide), the catalytic domain modelled here
           and the regulatory domain (pfam03170). The regulatory
           domain binds the allosteric activator cyclic di-GMP. The
           protein is membrane-associated and probably assembles
           into multimers such that the individual cellulose
           strands can self-assemble into multi-strand fibrils.
          Length = 713

 Score = 26.9 bits (60), Expect = 2.9
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 25/120 (20%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
              AV  +     +  A   L + +I      +   +FLL   L   + +   L LL+ L
Sbjct: 11  FIIAVAGLLALLALITAPVTLETQLI------IAGSAFLLLLILKRFNGKRPRL-LLLVL 63

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA--------ILGGILSV 118
            VFI     +            LT T  +          L  +A        +LG   +V
Sbjct: 64  SVFISLRYLWW----------RLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTV 113


>gnl|CDD|181246 PRK08136, PRK08136, glycosyl transferase family protein;
          Provisional.
          Length = 317

 Score = 25.2 bits (56), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 26 DLFSAMIPNRVSIVMLGSFLL 46
           L+ AM+  RV  + LG+ L+
Sbjct: 27 ALYGAMLDGRVPDLELGAILI 47


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.337    0.149    0.463 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,948,989
Number of extensions: 195689
Number of successful extensions: 1233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 186
Length of query: 176
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,114,577
Effective search space: 366197353
Effective search space used: 366197353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 54 (24.5 bits)