RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type
IV [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.8 bits (64), Expect = 0.74
 Identities = 44/261 (16%), Positives = 75/261 (28%), Gaps = 116/261 (44%)

Query: 11  VFLIPPFCLVFAA--LSDLFSAMIPNRV----------SIV-MLGSFL------------ 45
           V L+P     F A  L + F+ ++P             +   ++G FL            
Sbjct: 19  VLLVPT-ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77

Query: 46  ----------LTAF----LLGMDYELIALHLL------VGLIVFIICFCFFAFNIMGG-- 83
                     LT F    L G D   +A  LL      +     +I   +    IM    
Sbjct: 78  GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK-NYITARIMAKRP 136

Query: 84  ---------------GDVKLLTSTAVWFG---------------WT--PSFLSFLFFVAI 111
                          G+ +L+   A+ FG               +      +  L  +  
Sbjct: 137 FDKKSNSALFRAVGEGNAQLV---AI-FGGQGNTDDYFEELRDLYQTYHVLVGDL--IKF 190

Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSF-LMK-----NKIP---Y--GIAISMG--GL 158
               LS       +I   +    +F  +   +++     +  P   Y   I IS    G+
Sbjct: 191 SAETLS------ELIRTTLDAEKVF-TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243

Query: 159 ISYPDSYL--FKVA--LMGLS 175
           I      L  + V   L+G +
Sbjct: 244 IQ-----LAHYVVTAKLLGFT 259



 Score = 26.8 bits (59), Expect = 2.9
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 19/50 (38%)

Query: 2   KESKMVFSAVFLIP---PF---CLVFAA---LSDL------FSA---MIP 33
            E K+ FS  FL P   PF    LV A+     DL      F+A    IP
Sbjct: 410 SERKLKFSNRFL-PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458


>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
           ION channel, electron microscopy, ION transport,
           postsynaptic membrane; 4.00A {Torpedo marmorata}
          Length = 370

 Score = 25.8 bits (56), Expect = 5.5
 Identities = 12/67 (17%), Positives = 24/67 (35%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            +      + A L          ++S+ +     LT FLL +  ++    L V +I+  +
Sbjct: 216 IVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYL 275

Query: 72  CFCFFAF 78
            F     
Sbjct: 276 MFIMILV 282


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.337    0.149    0.463 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,477,271
Number of extensions: 65081
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 82
Length of query: 176
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 90
Effective length of database: 3,608,246
Effective search space: 324742140
Effective search space used: 324742140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 53 (24.7 bits)