RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62] (176 letters) >d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40 [TaxId: 10633]} Length = 80 Score = 26.0 bits (57), Expect = 1.8 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 14/46 (30%) Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113 V++ C+CF F +WFG + L + I+G Sbjct: 44 VWVDCYCFDCF--------------RMWFGLDLCEGTLLLWCDIIG 75 >d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157 Score = 24.3 bits (52), Expect = 5.8 Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 4/52 (7%) Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 I + L + W P+ IL G+LS + Sbjct: 65 PSIYMITPNGRFKCNTRLCLSITDFHPDTWNPA----WSVSTILTGLLSFMV 112 >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Score = 24.1 bits (51), Expect = 8.3 Identities = 6/13 (46%), Positives = 9/13 (69%) Query: 164 SYLFKVALMGLSA 176 SYLFK ++G + Sbjct: 1 SYLFKYIIIGDTG 13 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.337 0.149 0.463 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 642,696 Number of extensions: 28169 Number of successful extensions: 159 Number of sequences better than 10.0: 1 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 45 Length of query: 176 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 97 Effective length of database: 1,322,926 Effective search space: 128323822 Effective search space used: 128323822 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 50 (23.3 bits)