BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type
IV [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 176

 Score =  341 bits (875), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL
Sbjct: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI
Sbjct: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
           LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA
Sbjct: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176


>gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 480

 Score = 23.1 bits (48), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 143 MKNKIPYGIAISMGGLISYPDSYLFKVAL 171
           +K K+  GI+I+    IS+PD++L   AL
Sbjct: 143 IKCKVIAGISIADRKGISFPDTFLTTQAL 171


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.337    0.149    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,839
Number of Sequences: 1233
Number of extensions: 4513
Number of successful extensions: 19
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 176
length of database: 328,796
effective HSP length: 68
effective length of query: 108
effective length of database: 244,952
effective search space: 26454816
effective search space used: 26454816
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 35 (18.1 bits)