Query gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 120
No_of_seqs 110 out of 335
Neff 2.6
Searched_HMMs 23785
Date Mon May 30 14:09:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780730.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zih_A Vacuolar protein sortin 8.7 97 0.0041 12.2 1.6 26 8-33 78-108 (347)
2 2akh_Z Preprotein translocase 8.7 97 0.0041 12.2 4.3 48 9-57 19-66 (111)
3 2ra4_A Small-inducible cytokin 8.2 85 0.0036 12.5 0.6 11 69-79 1-11 (76)
4 2kjf_A Carnocyclin-A; circular 8.2 46 0.0019 14.0 -0.8 31 27-57 22-52 (60)
5 3ci9_A Heat shock factor-bindi 6.8 1.2E+02 0.005 11.7 3.3 23 32-54 7-29 (48)
6 1cii_A Colicin IA; bacteriocin 6.4 1.1E+02 0.0045 12.0 0.4 26 18-43 556-581 (602)
7 3pe5_A Uncharacterized protein 5.3 1.1E+02 0.0048 11.8 0.0 24 38-61 54-77 (403)
8 3ixz_B Potassium-transporting 4.5 1.7E+02 0.0071 10.8 3.3 66 3-82 14-86 (290)
9 2ao6_B NCOA-2, 14-MER fragment 4.1 1.8E+02 0.0076 10.7 2.2 20 4-23 4-23 (26)
10 2kdc_A Diacylglycerol kinase; 4.0 1.8E+02 0.0077 10.6 1.2 39 15-55 49-87 (121)
No 1
>2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS, golgi localization, VPS74, tetramer, golgi apparatus, phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB: 2zii_A
Probab=8.72 E-value=97 Score=12.18 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=17.7
Q ss_pred HHHHCCCCHH-----HHHHHHHHHHHHHHHH
Q ss_conf 9961225702-----9999999999999999
Q gi|254780730|r 8 KILKNGSGAT-----AIEYGLLASLVSVAII 33 (120)
Q Consensus 8 rFl~DEsGAT-----AIEYgLIaALIaVAII 33 (120)
--++|++|.. .++|||.+++++=-.+
T Consensus 78 L~L~D~~G~~s~~~~~l~~aLaGAiL~ELaL 108 (347)
T 2zih_A 78 MGLRDREGYLSFWNDSISYALRGCIIIELAL 108 (347)
T ss_dssp HTCCSSSGGGSCCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6336788973235430899998999999984
No 2
>2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z
Probab=8.69 E-value=97 Score=12.17 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=33.6
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9612257029999999999999999999876358999999997310147
Q gi|254780730|r 9 ILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKG 57 (120)
Q Consensus 9 Fl~DEsGATAIEYgLIaALIaVAIIaavt~LGt~L~~~FttVst~LnkG 57 (120)
+..|++...- --++++.++....+...+.-|.++-+-|..+-.++.|=
T Consensus 19 ~f~~~~~~~r-~l~~~~~~~~a~~i~~~T~kG~~~~~f~~e~r~ElkKV 66 (111)
T 2akh_Z 19 LYRDIMLPLR-ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKV 66 (111)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 9985229999-99999999999999998230358999999999998438
No 3
>2ra4_A Small-inducible cytokine A13; CCL13, MCP-4, CC chemokine family, chemotaxis, monocytes, inflammatory response, polymorphism; 1.70A {Homo sapiens}
Probab=8.25 E-value=85 Score=12.52 Aligned_cols=11 Identities=36% Similarity=0.607 Sum_probs=7.5
Q ss_pred CCCCCCCCCCC
Q ss_conf 78677877432
Q gi|254780730|r 69 MQPESSNPSTR 79 (120)
Q Consensus 69 ~~~~~~~~~~~ 79 (120)
|||||.|-++.
T Consensus 1 ~~p~s~~~p~~ 11 (76)
T 2ra4_A 1 MQPDALNVPST 11 (76)
T ss_dssp ---CCCCCCEE
T ss_pred CCCCCCCCCCC
T ss_conf 98864799855
No 4
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=8.24 E-value=46 Score=14.02 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999876358999999997310147
Q gi|254780730|r 27 LVSVAIISAVSTLGDRMKGVYQTISTELDKG 57 (120)
Q Consensus 27 LIaVAIIaavt~LGt~L~~~FttVst~LnkG 57 (120)
|-...||..+..+--.++++|+.|...+.+-
T Consensus 22 ltvgsiisilggvtvglsgvftavkaaiakq 52 (60)
T 2kjf_A 22 LTVGSIISILGGVTVGLSGVFTAVKAAIAKQ 52 (60)
T ss_dssp CCHHHHHHHHCSSCTTTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCEECHHHHHHHHHHHHHHH
T ss_conf 4166788765472550035799999999998
No 5
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=6.85 E-value=1.2e+02 Score=11.68 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999876358999999997310
Q gi|254780730|r 32 IISAVSTLGDRMKGVYQTISTEL 54 (120)
Q Consensus 32 IIaavt~LGt~L~~~FttVst~L 54 (120)
+...|..|=.++.+.|+++++++
T Consensus 7 Lt~~Vq~LL~QmQ~kFq~mSd~I 29 (48)
T 3ci9_A 7 LTSVVQTLLQQMQDKFQTISDQI 29 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999889999
No 6
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=6.40 E-value=1.1e+02 Score=11.95 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998763589
Q gi|254780730|r 18 AIEYGLLASLVSVAIISAVSTLGDRM 43 (120)
Q Consensus 18 AIEYgLIaALIaVAIIaavt~LGt~L 43 (120)
.+.|++.+.++++.+.++++.+|..+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (602)
T 1cii_A 556 NAATALVALVFSILTGSALGIIGYGL 581 (602)
T ss_dssp CBHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13999999999988633899999999
No 7
>3pe5_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.38A {Clostridium leptum}
Probab=5.27 E-value=1.1e+02 Score=11.79 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 763589999999973101478987
Q gi|254780730|r 38 TLGDRMKGVYQTISTELDKGDVPP 61 (120)
Q Consensus 38 ~LGt~L~~~FttVst~LnkG~~pp 61 (120)
.....+...+..+..........+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~ 77 (403)
T 3pe5_A 54 YAHGLLAGMYQNLDSTVLDSSAKE 77 (403)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999886544421333212333333
No 8
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa}
Probab=4.46 E-value=1.7e+02 Score=10.83 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCC-----CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 699999961225-----7029999999999999--999999876358999999997310147898767887557867787
Q gi|254780730|r 3 MNIIKKILKNGS-----GATAIEYGLLASLVSV--AIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSN 75 (120)
Q Consensus 3 Mn~ikrFl~DEs-----GATAIEYgLIaALIaV--AIIaavt~LGt~L~~~FttVst~LnkG~~pp~~p~~~~~~~~~~~ 75 (120)
++-.++|+.|-+ |-|+-..+.|..+-.+ ++++++ +.-.+..+|++++... | ..|...+|
T Consensus 14 ~~~fk~fl~n~~~~~~lGRT~~sW~kI~lFYliFY~~La~~--Fa~~m~v~~~tl~~~~---------P---~~q~~~s~ 79 (290)
T 3ixz_B 14 MEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGI--FALCIYVLMRTIDPYT---------P---DYQDQLKS 79 (290)
T ss_pred HHHHHHHEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCC---------C---CCCCCCCC
T ss_conf 88888757858889161757647999999999999999999--9999999998768889---------9---86536889
Q ss_pred CCCCCCC
Q ss_conf 7432458
Q gi|254780730|r 76 PSTRLQP 82 (120)
Q Consensus 76 ~~~~~~~ 82 (120)
|.--..|
T Consensus 80 PGL~~rP 86 (290)
T 3ixz_B 80 PGVTLRP 86 (290)
T ss_pred CCEEEEC
T ss_conf 9646437
No 9
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=4.13 E-value=1.8e+02 Score=10.68 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=15.2
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999961225702999999
Q gi|254780730|r 4 NIIKKILKNGSGATAIEYGL 23 (120)
Q Consensus 4 n~ikrFl~DEsGATAIEYgL 23 (120)
.++|-++..++|-.|..|-|
T Consensus 4 allrylldkddgnaalryll 23 (26)
T 2ao6_B 4 ALLRYLLDKDDGNAALRYLL 23 (26)
T ss_pred HHHHHHHCCCCCHHHHHHHH
T ss_conf 59999861556569999996
No 10
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=4.04 E-value=1.8e+02 Score=10.64 Aligned_cols=39 Identities=31% Similarity=0.373 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 70299999999999999999998763589999999973101
Q gi|254780730|r 15 GATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELD 55 (120)
Q Consensus 15 GATAIEYgLIaALIaVAIIaavt~LGt~L~~~FttVst~Ln 55 (120)
+.+..|+.++...+.++++ +-.+.+.+..+.+.++.+.+
T Consensus 49 ~~~~~e~~~li~~i~lvl~--~EllNTaIE~~vD~i~~e~~ 87 (121)
T 2kdc_A 49 DVDAITRVLLISSVMLVMI--VEILNSAIEAVVDRIGSEYH 87 (121)
T ss_dssp CCCCSHHHHHHHHHHHHHH--HHTHHHHHHHHHTTCCCCSC
T ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCC
T ss_conf 5989999999999999999--99999999999988472426
Done!