RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780730|ref|YP_003065143.1| hypothetical protein
CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
>gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp
[Intracellular trafficking and secretion].
Length = 58
Score = 60.3 bits (146), Expect = 1e-10
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 3 MNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELD 55
++++ L++ GATAIEYGL+A+L++V II+ STLG +KG + I L
Sbjct: 2 KKLLRRFLRDEDGATAIEYGLIAALIAVVIIAGGSTLGTALKGAFTAIGAALT 54
>gnl|CDD|113726 pfam04964, Flp_Fap, Flp/Fap pilin component.
Length = 47
Score = 56.8 bits (138), Expect = 1e-09
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 10 LKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELD 55
LK+ SGATAIEYGL+A+L++V II+ V+TLG +K + +I T L
Sbjct: 2 LKDESGATAIEYGLIAALIAVVIIAYVTTLGTALKTKFTSIGTALT 47
>gnl|CDD|36658 KOG1445, KOG1445, KOG1445, Tumor-specific antigen (contains WD
repeats) [Cytoskeleton].
Length = 1012
Score = 29.7 bits (66), Expect = 0.22
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 60 PPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVK 115
PP +P P ++ + PPA P + SS P + PA KK V+
Sbjct: 398 PPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVR 453
>gnl|CDD|37888 KOG2677, KOG2677, KOG2677, Stoned B synaptic vesicle biogenesis
protein [Intracellular trafficking, secretion, and
vesicular transport].
Length = 922
Score = 28.6 bits (63), Expect = 0.41
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 61 PTKPGSVPMQPESSN-PSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKS 119
P P + P++PE P+T P A + IP +S S K+ P ++ K K
Sbjct: 243 PLPPVTSPLKPEIRRVPNTPAIPSASRSVIPDVPYNSMGSFKKRDRPKSTLMNFSKVQKL 302
Query: 120 S 120
Sbjct: 303 D 303
>gnl|CDD|35734 KOG0514, KOG0514, KOG0514, Ankyrin repeat protein [General function
prediction only].
Length = 452
Score = 27.4 bits (60), Expect = 0.86
Identities = 21/97 (21%), Positives = 34/97 (35%)
Query: 24 LASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSNPSTRLQPP 83
LA S A +A T G +G K PP+ M+P +S +T P
Sbjct: 6 LARGFSKASPTATRTGGAVRRGTSADSRIPRPKHSSPPSPVRKSFMRPNTSTLATPTPEP 65
Query: 84 AKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120
+ S S + + +++ +P K S
Sbjct: 66 KARLPSLQEKPPSVSSEQASEPLPESQSFIRQPQKDS 102
>gnl|CDD|33967 COG4244, COG4244, Predicted membrane protein [Function unknown].
Length = 160
Score = 27.5 bits (61), Expect = 0.93
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 3 MNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQ 48
+ + + +N + A GLL SL +V +++ LG ++ +
Sbjct: 103 LTAWRYVHRNDAVAAVSPAGLLLSLATVLLVALQGYLGAQLVYEHG 148
>gnl|CDD|35779 KOG0559, KOG0559, KOG0559, Dihydrolipoamide succinyltransferase
(2-oxoglutarate dehydrogenase, E2 subunit) [Energy
production and conversion].
Length = 457
Score = 27.3 bits (60), Expect = 0.96
Identities = 11/59 (18%), Positives = 15/59 (25%)
Query: 53 ELDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKK 111
E P P PPA + PV + K S + + P
Sbjct: 164 EPKTAPAAAAPPKPSSKPPPKEAAPVAESPPAPSSPEPVPASAKKPSVAQPKPPPSEGA 222
>gnl|CDD|35384 KOG0162, KOG0162, KOG0162, Myosin class I heavy chain
[Cytoskeleton].
Length = 1106
Score = 26.9 bits (59), Expect = 1.3
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 34 SAVSTLGDRMKGVYQTISTELDKGDVP----PTKPGSVPMQPESSNPSTRLQPPAKPT-S 88
+ L D K + ++ T L P P K ++++ TR P K
Sbjct: 903 EDLKVLKDIYKSLTVSVGTGLPPNSKPSRKKPRKATGYSSGRDAASTPTRRAPQNKQAYG 962
Query: 89 IPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120
+ ++K SP Q P P +S
Sbjct: 963 QNGVSPAAKGSPLPAQKPVNTYNQRPPPVSTS 994
Score = 24.9 bits (54), Expect = 4.7
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 57 GDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPK 101
G P K +P Q N + PP ++ + S++ S K
Sbjct: 965 GVSPAAKGSPLPAQK-PVNTYNQRPPPVSTSTTTSQQPSARPSSK 1008
>gnl|CDD|38063 KOG2852, KOG2852, KOG2852, Possible oxidoreductase [General
function prediction only].
Length = 380
Score = 26.5 bits (58), Expect = 1.7
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 14 SGATAIEYGLLASLVSVAIISAVST--------LGDRMKGV----YQTISTELDKGDVPP 61
GA+ G LA +II ++T L D GV Y+ ++T K D
Sbjct: 52 GGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYDGVNNWGYRALTTWSCKADWEN 111
Query: 62 TKPGSVPMQPESSNPS 77
T P VP +
Sbjct: 112 TNPAKVPEGLDWIQRE 127
>gnl|CDD|146909 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 324
Score = 25.9 bits (57), Expect = 2.5
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 70 QPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120
+ +P + P+KPTSI K+ + + KN KP +
Sbjct: 223 NDNTPSPKSGSSSPSKPTSILKKSAAKRSEAPSSSKAKKNSLGIPKPKSAL 273
>gnl|CDD|36309 KOG1093, KOG1093, KOG1093, Predicted protein kinase (contains TBC
and RHOD domains) [General function prediction only].
Length = 725
Score = 26.1 bits (57), Expect = 2.6
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 71 PESSNPSTRLQPPAKPTSIPVKTKSSKKSPK 101
P+S P P KPTS+ ++ SS+ P+
Sbjct: 594 PKSITPRQHANPF-KPTSLSLQQLSSEHCPR 623
>gnl|CDD|38799 KOG3592, KOG3592, KOG3592, Microtubule-associated proteins
[Cytoskeleton].
Length = 934
Score = 25.9 bits (56), Expect = 3.0
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 63 KPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNK 118
P + E+ P+TR P K P K ++K P ++ PAK+ + K
Sbjct: 319 AGPEKPTKTETKEPATRTAVPKKAPK-PSKAAVAEKQPTEVKRPAKSAPALKKGAP 373
>gnl|CDD|32941 COG3127, COG3127, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, permease component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 829
Score = 25.6 bits (56), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 23 LLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDV 59
L A ++VA I+A+ +L DRM+ + E GD
Sbjct: 25 LAALALAVAAIAALGSLSDRMEKGLAQQAREFLAGDR 61
>gnl|CDD|144551 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 371
Score = 25.6 bits (57), Expect = 3.6
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 20 EYGLLASLVSVAIISAVST------LGDRM---KGVYQTISTEL 54
LL +L+ A +SA S L +R + I E
Sbjct: 105 GIPLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGES 148
>gnl|CDD|147212 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 25.4 bits (56), Expect = 3.8
Identities = 14/61 (22%), Positives = 18/61 (29%)
Query: 51 STELDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNK 110
D PP S P S PPA + K+ + Q K+K
Sbjct: 312 HLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAAFERPLALSPKRKREGDKKQKKKKSK 371
Query: 111 K 111
K
Sbjct: 372 K 372
>gnl|CDD|35481 KOG0260, KOG0260, KOG0260, RNA polymerase II, large subunit
[Transcription].
Length = 1605
Score = 24.6 bits (53), Expect = 6.2
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 61 PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKS 112
PT P P P S +P++ P P+ P S SP SP+ + S
Sbjct: 1538 PTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSTSPSYSPTS 1588
>gnl|CDD|38806 KOG3600, KOG3600, KOG3600, Thyroid hormone receptor-associated
protein complex, subunit TRAP240 [Transcription].
Length = 2238
Score = 24.7 bits (53), Expect = 6.4
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 76 PSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120
S+ P P I ++ + K+SP + KK + + K
Sbjct: 551 VSSPQPPKLSPYPIDMQKEIVKRSPSQPLVLLSYKKKFQQYLKEV 595
>gnl|CDD|145975 pfam03117, Herpes_UL49_1, UL49 family. Members of this family,
found in several herpesviruses, include EBV BFRF2 and
other UL49 proteins (e.g. HCMVA UL49, HSV6 U33). There
are eight conserved cysteine residues in this
alignment, all lying towards the C-terminus. Their
function is unknown.
Length = 234
Score = 24.6 bits (54), Expect = 6.5
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 7 KKILKNGSGATAIEYGLLASLVSVAIISAVST 38
KI+ + + + Y LL+S++S+ ++ T
Sbjct: 53 PKIVTDL-LSKVLSYNLLSSVISLPVLCPCVT 83
>gnl|CDD|35840 KOG0621, KOG0621, KOG0621, Phospholipid scramblase [Cell
wall/membrane/envelope biogenesis].
Length = 292
Score = 24.5 bits (53), Expect = 6.8
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 59 VPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAK 108
T P + E+S +L+PPAK + P+ +P
Sbjct: 1 TSLTSAYRSPEEVETSADKKKLEPPAKRARFGRMRGGGTRLPQARDTPMV 50
>gnl|CDD|36310 KOG1094, KOG1094, KOG1094, Discoidin domain receptor DDR1 [Signal
transduction mechanisms].
Length = 807
Score = 24.6 bits (53), Expect = 6.9
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 58 DVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAK 108
VPP P SVP E+ + + +++P K P ++ P
Sbjct: 488 LVPPPPPNSVPHYGEADIVTLQGVSGGNSSAVPYLPPGVGKGPALVEFPRS 538
>gnl|CDD|35969 KOG0750, KOG0750, KOG0750, Mitochondrial solute carrier protein
[Energy production and conversion].
Length = 304
Score = 24.5 bits (53), Expect = 7.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 10 LKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDK 56
K+GSGA LA LV+ + + V T D +K QT+ D
Sbjct: 202 KKDGSGAAVFYQSFLAGLVAGSASAIVVTPLDVVKTRIQTLGDNEDN 248
>gnl|CDD|34568 COG4961, TadG, Flp pilus assembly protein TadG [Intracellular
trafficking and secretion].
Length = 185
Score = 24.3 bits (52), Expect = 7.5
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 6 IKKILKNGSGATAIEYGLLASLVSVAIISAV 36
+++ ++ GA A+E+ L+A + + + V
Sbjct: 12 LRRFRRDRRGAAAVEFALVAPPLLLLVFGIV 42
>gnl|CDD|146621 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 235
Score = 24.3 bits (53), Expect = 7.9
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 18/73 (24%)
Query: 55 DKGDVPPTKPGSVPMQPESSNPST----------------RLQPPAKPTSIPVKTKSSKK 98
K + + S P SS PST R + AK +S +K
Sbjct: 103 KKQESATSAESSPSSTPNSSRPSTPSLLKAKEGPGGRTSRRAKKAAKLSSTASSGD--EK 160
Query: 99 SPKRIQSPAKNKK 111
SPK+ ++P K K
Sbjct: 161 SPKKKKAPKKGGK 173
>gnl|CDD|144452 pfam00860, Xan_ur_permease, Permease family. This family includes
permeases for diverse substrates such as xanthine,
uracil, and vitamin C. However many members of this
family are functionally uncharacterized and may
transport other substrates. Members of this family have
ten predicted transmembrane helices.
Length = 389
Score = 24.2 bits (53), Expect = 9.0
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 15 GATAIEYGLLASLVSVAIISAVSTLGD 41
G GL+ ++++VA+++ V + GD
Sbjct: 225 GTPLFNPGLILTVLAVALVAIVESTGD 251
>gnl|CDD|99895 cd05834, HDGF_related, The PWWP domain is an essential part of the
Hepatoma Derived Growth Factor (HDGF) family of
proteins, and is necessary for DNA binding by HDGF. This
family of endogenous nuclear-targeted mitogens includes
HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2,
HPR3, HPR4, respectively) and lens epithelium-derived
growth factor, LEDGF. Members of the HDGF family have
been linked to human diseases, and HDGF is a prognostic
factor in several types of cancer. The PWWP domain,
named for a conserved Pro-Trp-Trp-Pro motif, is a small
domain consisting of 100-150 amino acids. The PWWP
domain is found in numerous proteins that are involved
in cell division, growth and differentiation. Most
PWWP-domain proteins seem to be nuclear, often
DNA-binding, proteins that function as transcription
factors regulating a variety of developmental
processes..
Length = 83
Score = 24.2 bits (53), Expect = 9.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 100 PKRIQSPAKNKKSYVKPNK 118
P+ + +NKK + KP K
Sbjct: 51 PEDLFPYTENKKKFGKPKK 69
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.305 0.123 0.329
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,257,468
Number of extensions: 53714
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 91
Length of query: 120
Length of database: 6,263,737
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,491,799
Effective search space: 170688362
Effective search space used: 170688362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.6 bits)