BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780730|ref|YP_003065143.1| hypothetical protein
CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 120
Score = 231 bits (590), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVP 60
MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVP
Sbjct: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVP 60
Query: 61 PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120
PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS
Sbjct: 61 PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120
>gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 58
Score = 70.9 bits (172), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 47/55 (85%)
Query: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELD 55
MKM+I+K L++ SGATAIEYGLLASL++VAII++V+TLG ++ V+ IS++L+
Sbjct: 1 MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55
>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 56
Score = 69.7 bits (169), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 43/50 (86%)
Query: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50
MKMNI+K LK+ SGATAIEYGLLASL++VAII++V+TLG ++ V++ I
Sbjct: 1 MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDI 50
>gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str.
psy62]
Length = 62
Score = 64.3 bits (155), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 41/50 (82%)
Query: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50
MKM+I+K L++ SGATAIEYGLL SL++V II++V+TLG ++K ++ I
Sbjct: 1 MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAI 50
>gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 60
Score = 35.0 bits (79), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 3 MNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQ 48
+N + K+LK+ SGA AIEYG+L +L++VAII+AV+ LG +KG ++
Sbjct: 2 INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFE 47
>gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 75
Score = 23.5 bits (49), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 19 IEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSN 75
EYG++A+L++VAII+AV+ LG +KG ++ ++ ++ P P + P+ P S+
Sbjct: 5 YEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKP--PVTRPVTPTSTE 59
>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
Liberibacter asiaticus str. psy62]
Length = 461
Score = 21.2 bits (43), Expect = 5.7, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 19 IEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDV 59
+E GLL ++ I+ VS + ++ IST L G +
Sbjct: 271 LETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPGAI 311
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.305 0.123 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,681
Number of Sequences: 1233
Number of extensions: 2336
Number of successful extensions: 12
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 120
length of database: 328,796
effective HSP length: 64
effective length of query: 56
effective length of database: 249,884
effective search space: 13993504
effective search space used: 13993504
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 33 (17.3 bits)