Query gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 58
No_of_seqs 102 out of 256
Neff 4.4
Searched_HMMs 23785
Date Mon May 30 13:49:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780732.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zih_A Vacuolar protein sortin 5.3 1.9E+02 0.0079 12.2 1.5 22 9-30 79-105 (347)
2 1u8b_A ADA polyprotein; protei 4.9 2E+02 0.0084 12.1 1.5 20 4-23 108-127 (133)
3 1zcd_A Na(+)/H(+) antiporter 1 3.5 2.1E+02 0.0088 12.0 0.2 16 3-18 1-16 (388)
4 1y7o_A ATP-dependent CLP prote 3.4 1E+02 0.0042 13.6 -1.5 10 15-24 197-206 (218)
5 2hi2_A Fimbrial protein; type 3.4 2.7E+02 0.011 11.5 3.0 27 17-43 2-28 (158)
6 3p2l_A ATP-dependent CLP prote 3.3 1.5E+02 0.0061 12.8 -0.8 10 15-24 180-189 (201)
7 1tg6_A Putative ATP-dependent 3.2 1.5E+02 0.0063 12.7 -0.8 12 14-25 231-242 (277)
8 2jsp_A Transcriptional regulat 2.7 2.8E+02 0.012 11.4 0.2 20 3-22 31-50 (87)
9 2f6i_A ATP-dependent CLP prote 2.5 2E+02 0.0083 12.1 -0.8 7 18-24 191-197 (215)
10 3kn1_A Golgi phosphoprotein 3; 2.5 3.5E+02 0.015 10.9 2.3 20 10-29 22-46 (249)
No 1
>2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS, golgi localization, VPS74, tetramer, golgi apparatus, phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB: 2zii_A
Probab=5.30 E-value=1.9e+02 Score=12.23 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=15.8
Q ss_pred HHHCCCCCC-----HHHHHHHHHHHHH
Q ss_conf 950236832-----9999999999999
Q gi|254780732|r 9 FLQDESGAT-----AIEYGLLASLIAV 30 (58)
Q Consensus 9 f~~De~GaT-----AIEYgLIaalIav 30 (58)
-++|++|.. .++|||-.++++=
T Consensus 79 ~L~D~~G~~s~~~~~l~~aLaGAiL~E 105 (347)
T 2zih_A 79 GLRDREGYLSFWNDSISYALRGCIIIE 105 (347)
T ss_dssp TCCSSSGGGSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 336788973235430899998999999
No 2
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=4.90 E-value=2e+02 Score=12.09 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=16.2
Q ss_pred HHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999950236832999999
Q gi|254780732|r 4 HIVKNFLQDESGATAIEYGL 23 (58)
Q Consensus 4 ~~~~~f~~De~GaTAIEYgL 23 (58)
.-+.|.++.+-|.|-.||-.
T Consensus 108 ~~l~R~Fk~~~G~tp~~yl~ 127 (133)
T 1u8b_A 108 FHLHRLFKATTGMTPKAWQQ 127 (133)
T ss_dssp HHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999998929999999
No 3
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=3.49 E-value=2.1e+02 Score=12.00 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=11.9
Q ss_pred HHHHHHHHHCCCCCCH
Q ss_conf 6999999502368329
Q gi|254780732|r 3 MHIVKNFLQDESGATA 18 (58)
Q Consensus 3 m~~~~~f~~De~GaTA 18 (58)
||.++||++.|....-
T Consensus 1 ~~~l~~f~~~e~~~gi 16 (388)
T 1zcd_A 1 MKHLHRFFSSDASGGI 16 (388)
T ss_dssp --------CCSSHHHH
T ss_pred CHHHHHHHHCCHHHHH
T ss_conf 9158999851036899
No 4
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=3.45 E-value=1e+02 Score=13.56 Aligned_cols=10 Identities=30% Similarity=0.880 Sum_probs=4.9
Q ss_pred CCCHHHHHHH
Q ss_conf 8329999999
Q gi|254780732|r 15 GATAIEYGLL 24 (58)
Q Consensus 15 GaTAIEYgLI 24 (58)
+.-|+|||||
T Consensus 197 a~EAleyGli 206 (218)
T 1y7o_A 197 AQETLEYGFI 206 (218)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999985998
No 5
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=3.44 E-value=2.7e+02 Score=11.46 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 299999999999999999999975489
Q gi|254780732|r 17 TAIEYGLLASLIAVAIIASVTTLGGKL 43 (58)
Q Consensus 17 TAIEYgLIaalIav~ii~av~~lG~~l 43 (58)
|-||-=+..+.|++-.-.++..+.+..
T Consensus 2 TLIELlVVIaIIgILaaia~P~~~~~~ 28 (158)
T 2hi2_A 2 TLIELMIVIAIVGILAAVALPAYQDYT 28 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 442899999999999999999999999
No 6
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp}
Probab=3.27 E-value=1.5e+02 Score=12.77 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=4.5
Q ss_pred CCCHHHHHHH
Q ss_conf 8329999999
Q gi|254780732|r 15 GATAIEYGLL 24 (58)
Q Consensus 15 GaTAIEYgLI 24 (58)
+.-|+|||+|
T Consensus 180 a~EAleyGli 189 (201)
T 3p2l_A 180 ADEAKAYGLI 189 (201)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999984998
No 7
>1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=3.19 E-value=1.5e+02 Score=12.72 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=6.4
Q ss_pred CCCCHHHHHHHH
Q ss_conf 683299999999
Q gi|254780732|r 14 SGATAIEYGLLA 25 (58)
Q Consensus 14 ~GaTAIEYgLIa 25 (58)
+..-|+|||||-
T Consensus 231 sa~EA~eyGliD 242 (277)
T 1tg6_A 231 SPMEAQEFGILD 242 (277)
T ss_dssp CHHHHHHHTSCS
T ss_pred CHHHHHHCCCCC
T ss_conf 599999839987
No 8
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=2.70 E-value=2.8e+02 Score=11.36 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.8
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q ss_conf 69999995023683299999
Q gi|254780732|r 3 MHIVKNFLQDESGATAIEYG 22 (58)
Q Consensus 3 m~~~~~f~~De~GaTAIEYg 22 (58)
+++++|.+...-|-|.=||=
T Consensus 31 ~k~LkRHL~~~hgltp~eYR 50 (87)
T 2jsp_A 31 FKSLKRHLTTHHSMTPEEYR 50 (87)
T ss_dssp ESBHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHH
T ss_conf 55899998887198999999
No 9
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=2.54 E-value=2e+02 Score=12.12 Aligned_cols=7 Identities=43% Similarity=1.046 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780732|r 18 AIEYGLL 24 (58)
Q Consensus 18 AIEYgLI 24 (58)
|+|||+|
T Consensus 191 A~e~Gli 197 (215)
T 2f6i_A 191 AKQYGII 197 (215)
T ss_dssp HHHHTSC
T ss_pred HHHCCCC
T ss_conf 9983998
No 10
>3kn1_A Golgi phosphoprotein 3; beta hairpin, phosphoinositide binding domain, cell membrane, cytoplasm, endosome, golgi apparatus, membrane, mitochondrion; HET: MSE; 2.90A {Homo sapiens}
Probab=2.49 E-value=3.5e+02 Score=10.89 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=0.0
Q ss_pred HHCCCCCC-----HHHHHHHHHHHH
Q ss_conf 50236832-----999999999999
Q gi|254780732|r 10 LQDESGAT-----AIEYGLLASLIA 29 (58)
Q Consensus 10 ~~De~GaT-----AIEYgLIaalIa 29 (58)
++|++|-. .++|||-++++.
T Consensus 22 l~d~~G~~~~~~~~l~~~L~GaiL~ 46 (249)
T 3kn1_A 22 LKDREGYTSFWNDCISSGLRGCMLI 46 (249)
T ss_dssp CCSSSCTTCCCCHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 3378897500533499999999999
Done!