RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780732|ref|YP_003065145.1| hypothetical protein
CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62]
         (58 letters)



>gnl|CDD|183848 PRK13024, PRK13024, bifunctional preprotein translocase subunit
           SecD/SecF; Reviewed.
          Length = 755

 Score = 25.6 bits (57), Expect = 2.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 15  GATAIEYGLLASLIAVAIIA 34
           G  AI+ G++A +I  A+I 
Sbjct: 261 GQDAIDAGIIAGIIGFALIF 280


>gnl|CDD|150640 pfam09990, DUF2231, Predicted membrane protein (DUF2231).  This
          domain, found in various hypothetical bacterial
          proteins, has no known function.
          Length = 100

 Score = 24.4 bits (54), Expect = 6.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 21 YGLLASLIAVAIIASVTTLGGKLTAVF 47
           GL  SL+ VA++     LGG+L   +
Sbjct: 71 SGLALSLVVVALLGVQGWLGGELVYRY 97


>gnl|CDD|162214 TIGR01129, secD, protein-export membrane protein SecD.  SecD from
           Mycobacterium tuberculosis has a long Pro-rich insert.
          Length = 397

 Score = 24.2 bits (53), Expect = 9.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 15  GATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55
           GA +IE G+ A LI + ++     L  +L  + A I+  +N
Sbjct: 243 GADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVIN 283


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.130    0.338 

Gapped
Lambda     K      H
   0.267   0.0741    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 837,242
Number of extensions: 36622
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 21
Length of query: 58
Length of database: 5,994,473
Length adjustment: 30
Effective length of query: 28
Effective length of database: 5,346,233
Effective search space: 149694524
Effective search space used: 149694524
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.0 bits)