Query gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs 107 out of 264
Neff 4.6
Searched_HMMs 23785
Date Tue May 31 17:01:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780733.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zih_A Vacuolar protein sortin 4.9 1.9E+02 0.008 11.9 1.5 21 9-29 79-104 (347)
2 1zcd_A Na(+)/H(+) antiporter 1 4.6 1.5E+02 0.0063 12.4 0.2 16 3-18 1-16 (388)
3 1u8b_A ADA polyprotein; protei 4.1 2.2E+02 0.0093 11.6 2.0 21 3-23 107-127 (133)
4 1y7o_A ATP-dependent CLP prote 3.3 1.1E+02 0.0044 13.2 -1.5 10 15-24 197-206 (218)
5 3p2l_A ATP-dependent CLP prote 3.2 1.5E+02 0.0062 12.5 -0.8 10 15-24 180-189 (201)
6 2jsp_A Transcriptional regulat 3.2 2.4E+02 0.0099 11.4 0.2 20 3-22 31-50 (87)
7 1tg6_A Putative ATP-dependent 3.1 1.5E+02 0.0064 12.4 -0.8 11 14-24 231-241 (277)
8 2hi2_A Fimbrial protein; type 3.1 2.8E+02 0.012 11.1 3.0 27 17-43 2-28 (158)
9 1n11_A Ankyrin; clathrin, BAND 2.9 2.9E+02 0.012 11.0 1.1 17 11-27 373-389 (437)
10 3b71_D T-cell surface glycopro 2.9 3E+02 0.013 10.9 1.4 13 2-14 4-16 (26)
No 1
>2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS, golgi localization, VPS74, tetramer, golgi apparatus, phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB: 2zii_A
Probab=4.91 E-value=1.9e+02 Score=11.91 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=15.2
Q ss_pred HHHCCCCCC-----HHHHHHHHHHHH
Q ss_conf 950346833-----999999999999
Q gi|254780733|r 9 FLKDESGAT-----AIEYGLLASLIA 29 (56)
Q Consensus 9 f~~De~GaT-----AIEYgLIaalIa 29 (56)
-++|++|.. .++|||-.+++.
T Consensus 79 ~L~D~~G~~s~~~~~l~~aLaGAiL~ 104 (347)
T 2zih_A 79 GLRDREGYLSFWNDSISYALRGCIII 104 (347)
T ss_dssp TCCSSSGGGSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 33678897323543089999899999
No 2
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=4.59 E-value=1.5e+02 Score=12.44 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=12.0
Q ss_pred HHHHHHHHHCCCCCCH
Q ss_conf 5999999503468339
Q gi|254780733|r 3 MNIVKDFLKDESGATA 18 (56)
Q Consensus 3 m~~~~~f~~De~GaTA 18 (56)
||.++||+|.|....-
T Consensus 1 ~~~l~~f~~~e~~~gi 16 (388)
T 1zcd_A 1 MKHLHRFFSSDASGGI 16 (388)
T ss_dssp --------CCSSHHHH
T ss_pred CHHHHHHHHCCHHHHH
T ss_conf 9158999851036899
No 3
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=4.12 E-value=2.2e+02 Score=11.59 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q ss_conf 599999950346833999999
Q gi|254780733|r 3 MNIVKDFLKDESGATAIEYGL 23 (56)
Q Consensus 3 m~~~~~f~~De~GaTAIEYgL 23 (56)
-..+.|.++.+-|.|-.||-.
T Consensus 107 ~~~l~R~Fk~~~G~tp~~yl~ 127 (133)
T 1u8b_A 107 PFHLHRLFKATTGMTPKAWQQ 127 (133)
T ss_dssp HHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999998929999999
No 4
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=3.29 E-value=1.1e+02 Score=13.23 Aligned_cols=10 Identities=30% Similarity=0.880 Sum_probs=4.9
Q ss_pred CCCHHHHHHH
Q ss_conf 8339999999
Q gi|254780733|r 15 GATAIEYGLL 24 (56)
Q Consensus 15 GaTAIEYgLI 24 (56)
+.-|+|||++
T Consensus 197 a~EAleyGli 206 (218)
T 1y7o_A 197 AQETLEYGFI 206 (218)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999985998
No 5
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp}
Probab=3.22 E-value=1.5e+02 Score=12.48 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=4.5
Q ss_pred CCCHHHHHHH
Q ss_conf 8339999999
Q gi|254780733|r 15 GATAIEYGLL 24 (56)
Q Consensus 15 GaTAIEYgLI 24 (56)
+.-|+|||++
T Consensus 180 a~EAleyGli 189 (201)
T 3p2l_A 180 ADEAKAYGLI 189 (201)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999984998
No 6
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=3.17 E-value=2.4e+02 Score=11.44 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.8
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q ss_conf 59999995034683399999
Q gi|254780733|r 3 MNIVKDFLKDESGATAIEYG 22 (56)
Q Consensus 3 m~~~~~f~~De~GaTAIEYg 22 (56)
+++++|.+...-|-|.=||=
T Consensus 31 ~k~LkRHL~~~hgltp~eYR 50 (87)
T 2jsp_A 31 FKSLKRHLTTHHSMTPEEYR 50 (87)
T ss_dssp ESBHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHH
T ss_conf 55899998887198999999
No 7
>1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=3.14 E-value=1.5e+02 Score=12.41 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=5.9
Q ss_pred CCCCHHHHHHH
Q ss_conf 68339999999
Q gi|254780733|r 14 SGATAIEYGLL 24 (56)
Q Consensus 14 ~GaTAIEYgLI 24 (56)
+..-|+|||||
T Consensus 231 sa~EA~eyGli 241 (277)
T 1tg6_A 231 SPMEAQEFGIL 241 (277)
T ss_dssp CHHHHHHHTSC
T ss_pred CHHHHHHCCCC
T ss_conf 59999983998
No 8
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=3.10 E-value=2.8e+02 Score=11.07 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 399999999999999999999985589
Q gi|254780733|r 17 TAIEYGLLASLIAVAIIASVTTLGGKL 43 (56)
Q Consensus 17 TAIEYgLIaalIav~ii~av~~lG~~l 43 (56)
|-||-=+..+.|+|-...++..+....
T Consensus 2 TLIELlVVIaIIgILaaia~P~~~~~~ 28 (158)
T 2hi2_A 2 TLIELMIVIAIVGILAAVALPAYQDYT 28 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 442899999999999999999999999
No 9
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=2.95 E-value=2.9e+02 Score=10.98 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=7.8
Q ss_pred HCCCCCCHHHHHHHHHH
Q ss_conf 03468339999999999
Q gi|254780733|r 11 KDESGATAIEYGLLASL 27 (56)
Q Consensus 11 ~De~GaTAIEYgLIaal 27 (56)
+|..|-|+.+|+...+-
T Consensus 373 ~d~~G~t~L~~A~~~~~ 389 (437)
T 1n11_A 373 VSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp CCSSSCCHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHCCC
T ss_conf 69999899999998599
No 10
>3b71_D T-cell surface glycoprotein CD4; four-helix bundle, protein-protein complex, acetylation, alternative splicing, ATP-binding, cell junction, kinase; 2.82A {Homo sapiens}
Probab=2.85 E-value=3e+02 Score=10.92 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 2599999950346
Q gi|254780733|r 2 KMNIVKDFLKDES 14 (56)
Q Consensus 2 ~m~~~~~f~~De~ 14 (56)
||..++|++.+.+
T Consensus 4 rmsqikrllsekk 16 (26)
T 3b71_D 4 RMSQIKRLLSEKK 16 (26)
T ss_pred HHHHHHHHHHHCC
T ss_conf 8999999981042
Done!