Query gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 56 No_of_seqs 107 out of 264 Neff 4.6 Searched_HMMs 23785 Date Tue May 31 17:01:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780733.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zih_A Vacuolar protein sortin 4.9 1.9E+02 0.008 11.9 1.5 21 9-29 79-104 (347) 2 1zcd_A Na(+)/H(+) antiporter 1 4.6 1.5E+02 0.0063 12.4 0.2 16 3-18 1-16 (388) 3 1u8b_A ADA polyprotein; protei 4.1 2.2E+02 0.0093 11.6 2.0 21 3-23 107-127 (133) 4 1y7o_A ATP-dependent CLP prote 3.3 1.1E+02 0.0044 13.2 -1.5 10 15-24 197-206 (218) 5 3p2l_A ATP-dependent CLP prote 3.2 1.5E+02 0.0062 12.5 -0.8 10 15-24 180-189 (201) 6 2jsp_A Transcriptional regulat 3.2 2.4E+02 0.0099 11.4 0.2 20 3-22 31-50 (87) 7 1tg6_A Putative ATP-dependent 3.1 1.5E+02 0.0064 12.4 -0.8 11 14-24 231-241 (277) 8 2hi2_A Fimbrial protein; type 3.1 2.8E+02 0.012 11.1 3.0 27 17-43 2-28 (158) 9 1n11_A Ankyrin; clathrin, BAND 2.9 2.9E+02 0.012 11.0 1.1 17 11-27 373-389 (437) 10 3b71_D T-cell surface glycopro 2.9 3E+02 0.013 10.9 1.4 13 2-14 4-16 (26) No 1 >2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS, golgi localization, VPS74, tetramer, golgi apparatus, phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB: 2zii_A Probab=4.91 E-value=1.9e+02 Score=11.91 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=15.2 Q ss_pred HHHCCCCCC-----HHHHHHHHHHHH Q ss_conf 950346833-----999999999999 Q gi|254780733|r 9 FLKDESGAT-----AIEYGLLASLIA 29 (56) Q Consensus 9 f~~De~GaT-----AIEYgLIaalIa 29 (56) -++|++|.. .++|||-.+++. T Consensus 79 ~L~D~~G~~s~~~~~l~~aLaGAiL~ 104 (347) T 2zih_A 79 GLRDREGYLSFWNDSISYALRGCIII 104 (347) T ss_dssp TCCSSSGGGSCCCHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 33678897323543089999899999 No 2 >1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Probab=4.59 E-value=1.5e+02 Score=12.44 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=12.0 Q ss_pred HHHHHHHHHCCCCCCH Q ss_conf 5999999503468339 Q gi|254780733|r 3 MNIVKDFLKDESGATA 18 (56) Q Consensus 3 m~~~~~f~~De~GaTA 18 (56) ||.++||+|.|....- T Consensus 1 ~~~l~~f~~~e~~~gi 16 (388) T 1zcd_A 1 MKHLHRFFSSDASGGI 16 (388) T ss_dssp --------CCSSHHHH T ss_pred CHHHHHHHHCCHHHHH T ss_conf 9158999851036899 No 3 >1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A Probab=4.12 E-value=2.2e+02 Score=11.59 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.0 Q ss_pred HHHHHHHHHCCCCCCHHHHHH Q ss_conf 599999950346833999999 Q gi|254780733|r 3 MNIVKDFLKDESGATAIEYGL 23 (56) Q Consensus 3 m~~~~~f~~De~GaTAIEYgL 23 (56) -..+.|.++.+-|.|-.||-. T Consensus 107 ~~~l~R~Fk~~~G~tp~~yl~ 127 (133) T 1u8b_A 107 PFHLHRLFKATTGMTPKAWQQ 127 (133) T ss_dssp HHHHHHHHHHHTSSCHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHH T ss_conf 999999999998929999999 No 4 >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Probab=3.29 E-value=1.1e+02 Score=13.23 Aligned_cols=10 Identities=30% Similarity=0.880 Sum_probs=4.9 Q ss_pred CCCHHHHHHH Q ss_conf 8339999999 Q gi|254780733|r 15 GATAIEYGLL 24 (56) Q Consensus 15 GaTAIEYgLI 24 (56) +.-|+|||++ T Consensus 197 a~EAleyGli 206 (218) T 1y7o_A 197 AQETLEYGFI 206 (218) T ss_dssp HHHHHHHTSC T ss_pred HHHHHHCCCC T ss_conf 9999985998 No 5 >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Probab=3.22 E-value=1.5e+02 Score=12.48 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=4.5 Q ss_pred CCCHHHHHHH Q ss_conf 8339999999 Q gi|254780733|r 15 GATAIEYGLL 24 (56) Q Consensus 15 GaTAIEYgLI 24 (56) +.-|+|||++ T Consensus 180 a~EAleyGli 189 (201) T 3p2l_A 180 ADEAKAYGLI 189 (201) T ss_dssp HHHHHHHTSC T ss_pred HHHHHHCCCC T ss_conf 9999984998 No 6 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} Probab=3.17 E-value=2.4e+02 Score=11.44 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.8 Q ss_pred HHHHHHHHHCCCCCCHHHHH Q ss_conf 59999995034683399999 Q gi|254780733|r 3 MNIVKDFLKDESGATAIEYG 22 (56) Q Consensus 3 m~~~~~f~~De~GaTAIEYg 22 (56) +++++|.+...-|-|.=||= T Consensus 31 ~k~LkRHL~~~hgltp~eYR 50 (87) T 2jsp_A 31 FKSLKRHLTTHHSMTPEEYR 50 (87) T ss_dssp ESBHHHHHHHTTCSCHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHH T ss_conf 55899998887198999999 No 7 >1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Probab=3.14 E-value=1.5e+02 Score=12.41 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=5.9 Q ss_pred CCCCHHHHHHH Q ss_conf 68339999999 Q gi|254780733|r 14 SGATAIEYGLL 24 (56) Q Consensus 14 ~GaTAIEYgLI 24 (56) +..-|+||||| T Consensus 231 sa~EA~eyGli 241 (277) T 1tg6_A 231 SPMEAQEFGIL 241 (277) T ss_dssp CHHHHHHHTSC T ss_pred CHHHHHHCCCC T ss_conf 59999983998 No 8 >2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A* Probab=3.10 E-value=2.8e+02 Score=11.07 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=10.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 399999999999999999999985589 Q gi|254780733|r 17 TAIEYGLLASLIAVAIIASVTTLGGKL 43 (56) Q Consensus 17 TAIEYgLIaalIav~ii~av~~lG~~l 43 (56) |-||-=+..+.|+|-...++..+.... T Consensus 2 TLIELlVVIaIIgILaaia~P~~~~~~ 28 (158) T 2hi2_A 2 TLIELMIVIAIVGILAAVALPAYQDYT 28 (158) T ss_dssp CHHHHHHHHHHHHHHHHHHTTTHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 442899999999999999999999999 No 9 >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Probab=2.95 E-value=2.9e+02 Score=10.98 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=7.8 Q ss_pred HCCCCCCHHHHHHHHHH Q ss_conf 03468339999999999 Q gi|254780733|r 11 KDESGATAIEYGLLASL 27 (56) Q Consensus 11 ~De~GaTAIEYgLIaal 27 (56) +|..|-|+.+|+...+- T Consensus 373 ~d~~G~t~L~~A~~~~~ 389 (437) T 1n11_A 373 VSSDGTTPLAIAKRLGY 389 (437) T ss_dssp CCSSSCCHHHHHHHTTC T ss_pred CCCCCCCHHHHHHHCCC T ss_conf 69999899999998599 No 10 >3b71_D T-cell surface glycoprotein CD4; four-helix bundle, protein-protein complex, acetylation, alternative splicing, ATP-binding, cell junction, kinase; 2.82A {Homo sapiens} Probab=2.85 E-value=3e+02 Score=10.92 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=0.0 Q ss_pred HHHHHHHHHHCCC Q ss_conf 2599999950346 Q gi|254780733|r 2 KMNIVKDFLKDES 14 (56) Q Consensus 2 ~m~~~~~f~~De~ 14 (56) ||..++|++.+.+ T Consensus 4 rmsqikrllsekk 16 (26) T 3b71_D 4 RMSQIKRLLSEKK 16 (26) T ss_pred HHHHHHHHHHHCC T ss_conf 8999999981042 Done!