Query gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 56 No_of_seqs 107 out of 264 Neff 4.6 Searched_HMMs 13730 Date Wed Jun 1 08:51:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780733.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1kcza2 d.54.1.1 (A:1-160) bet 8.4 70 0.0051 12.9 2.3 22 13-34 124-145 (160) 2 d1kkoa2 d.54.1.1 (A:1-160) bet 6.2 91 0.0066 12.3 2.2 22 12-33 123-144 (160) 3 d1n11a_ d.211.1.1 (A:) Ankyrin 3.3 1.5E+02 0.011 11.2 1.1 17 12-28 360-376 (408) 4 d1pgja1 a.100.1.1 (A:179-478) 3.1 1.6E+02 0.012 11.1 1.7 10 18-27 12-21 (300) 5 d1d5ya1 a.4.1.8 (A:3-56) Rob t 3.0 1.7E+02 0.012 11.0 1.6 19 3-21 33-51 (54) 6 d1tg6a1 c.14.1.1 (A:1-193) Clp 2.7 1.1E+02 0.0077 12.0 -0.8 10 15-24 176-185 (193) 7 d1bl0a1 a.4.1.8 (A:9-62) MarA 2.5 1.9E+02 0.014 10.7 1.6 19 3-21 33-51 (54) 8 d2oara1 f.16.1.1 (A:10-118) Ga 2.5 1.9E+02 0.014 10.7 1.1 24 14-37 53-77 (109) 9 d1aipc1 a.5.2.2 (C:2-53) Elong 2.3 2E+02 0.015 10.5 1.3 18 2-20 2-19 (52) 10 d2cbya1 c.14.1.1 (A:15-193) Cl 2.2 1.3E+02 0.0096 11.5 -0.8 7 18-24 166-172 (179) No 1 >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Probab=8.42 E-value=70 Score=12.93 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=15.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 4683399999999999999999 Q gi|254780733|r 13 ESGATAIEYGLLASLIAVAIIA 34 (56) Q Consensus 13 e~GaTAIEYgLIaalIav~ii~ 34 (56) .+=-|||+||+=-+|..-+.-. T Consensus 124 ~~LHtAiRYGvSQALL~A~A~a 145 (160) T d1kcza2 124 NRLHTAIRYGITQAILDAVAKT 145 (160) T ss_dssp EECCHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHH T ss_conf 6014889972899999999998 No 2 >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Probab=6.19 E-value=91 Score=12.34 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=15.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH Q ss_conf 3468339999999999999999 Q gi|254780733|r 12 DESGATAIEYGLLASLIAVAII 33 (56) Q Consensus 12 De~GaTAIEYgLIaalIav~ii 33 (56) ..+=-|||+||+=-+|..-+.- T Consensus 123 g~~LHtAiRYGvSQALL~A~A~ 144 (160) T d1kkoa2 123 GNLLHTAVRYGLSQALLDATAL 144 (160) T ss_dssp TEECCHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHH T ss_conf 8701388997289999999999 No 3 >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Probab=3.30 E-value=1.5e+02 Score=11.18 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=8.8 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 34683399999999999 Q gi|254780733|r 12 DESGATAIEYGLLASLI 28 (56) Q Consensus 12 De~GaTAIEYgLIaalI 28 (56) |.+|-|+++|+...+=+ T Consensus 360 d~~G~t~L~~A~~~~~~ 376 (408) T d1n11a_ 360 SSDGTTPLAIAKRLGYI 376 (408) T ss_dssp CSSSCCHHHHHHHTTCH T ss_pred CCCCCCHHHHHHHCCCH T ss_conf 99998999999983999 No 4 >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Probab=3.07 E-value=1.6e+02 Score=11.05 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=5.5 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780733|r 18 AIEYGLLASL 27 (56) Q Consensus 18 AIEYgLIaal 27 (56) .||||.+-.+ T Consensus 12 gIEy~~mq~i 21 (300) T d1pgja1 12 SGEYAILQIW 21 (300) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 3989999999 No 5 >d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=2.96 E-value=1.7e+02 Score=10.99 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.1 Q ss_pred HHHHHHHHHCCCCCCHHHH Q ss_conf 5999999503468339999 Q gi|254780733|r 3 MNIVKDFLKDESGATAIEY 21 (56) Q Consensus 3 m~~~~~f~~De~GaTAIEY 21 (56) .+.+.|.++.+-|-|-.|| T Consensus 33 ~~~l~r~Fk~~~g~tp~~y 51 (54) T d1d5ya1 33 KWHLQRMFKDVTGHAIGAY 51 (54) T ss_dssp HHHHHHHHHHHHSSCHHHH T ss_pred HHHHHHHHHHHHCCCHHHH T ss_conf 9999999999999099999 No 6 >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Probab=2.70 E-value=1.1e+02 Score=12.01 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=4.3 Q ss_pred CCCHHHHHHH Q ss_conf 8339999999 Q gi|254780733|r 15 GATAIEYGLL 24 (56) Q Consensus 15 GaTAIEYgLI 24 (56) +.-|+|||++ T Consensus 176 a~EAl~yGli 185 (193) T d1tg6a1 176 PMEAQEFGIL 185 (193) T ss_dssp HHHHHHHTSC T ss_pred HHHHHHCCCC T ss_conf 9999983999 No 7 >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Probab=2.52 E-value=1.9e+02 Score=10.70 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.2 Q ss_pred HHHHHHHHHCCCCCCHHHH Q ss_conf 5999999503468339999 Q gi|254780733|r 3 MNIVKDFLKDESGATAIEY 21 (56) Q Consensus 3 m~~~~~f~~De~GaTAIEY 21 (56) -+.+.|.++...|-|-.|| T Consensus 33 ~~~l~r~Fk~~~g~tp~~Y 51 (54) T d1bl0a1 33 KWHLQRMFKKETGHSLGQY 51 (54) T ss_dssp HHHHHHHHHHHHSSCHHHH T ss_pred HHHHHHHHHHHHCCCHHHH T ss_conf 9999999999999199999 No 8 >d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]} Probab=2.46 E-value=1.9e+02 Score=10.66 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=15.9 Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHHH Q ss_conf 683399999-999999999999999 Q gi|254780733|r 14 SGATAIEYG-LLASLIAVAIIASVT 37 (56) Q Consensus 14 ~GaTAIEYg-LIaalIav~ii~av~ 37 (56) .|+..+.|| .+-++|.-.|++.+- T Consensus 53 ~~~~~i~~G~fi~a~InFlIiA~vv 77 (109) T d2oara1 53 GGGQTIDLNVLLSAAINFFLIAFAV 77 (109) T ss_dssp CSCEEECHHHHHHHHHHHHHHHHHH T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHH T ss_conf 7872343889999999999999999 No 9 >d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=2.32 E-value=2e+02 Score=10.55 Aligned_cols=18 Identities=22% Similarity=0.697 Sum_probs=0.0 Q ss_pred HHHHHHHHHHCCCCCCHHH Q ss_conf 2599999950346833999 Q gi|254780733|r 2 KMNIVKDFLKDESGATAIE 20 (56) Q Consensus 2 ~m~~~~~f~~De~GaTAIE 20 (56) .|..++.+ |++.|+...+ T Consensus 2 ~~elvK~L-R~~Tga~~~d 19 (52) T d1aipc1 2 QMELIKKL-REATGAGMMD 19 (52) T ss_dssp HHHHHHHH-HHHHCCCHHH T ss_pred HHHHHHHH-HHHHCCCHHH T ss_conf 18899999-9986987999 No 10 >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Probab=2.24 E-value=1.3e+02 Score=11.51 Aligned_cols=7 Identities=57% Similarity=1.284 Sum_probs=0.0 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780733|r 18 AIEYGLL 24 (56) Q Consensus 18 AIEYgLI 24 (56) |+|||++ T Consensus 166 A~~~Gli 172 (179) T d2cbya1 166 ALEYGFV 172 (179) T ss_dssp HHHHTSC T ss_pred HHHCCCC T ss_conf 9985998 Done!