RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780733|ref|YP_003065146.1| hypothetical protein
CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>gnl|CDD|113726 pfam04964, Flp_Fap, Flp/Fap pilin component. 
          Length = 47

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 31/47 (65%), Positives = 34/47 (72%)

Query: 9  FLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDIEKGIK 55
          FLKDESGATAIEYGL+A+LIAV IIA VTTLG  L   F  I   + 
Sbjct: 1  FLKDESGATAIEYGLIAALIAVVIIAYVTTLGTALKTKFTSIGTALT 47


>gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp
          [Intracellular trafficking and secretion].
          Length = 58

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 27/48 (56%), Positives = 34/48 (70%)

Query: 3  MNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDI 50
            +++ FL+DE GATAIEYGL+A+LIAV IIA  +TLG  L   F  I
Sbjct: 2  KKLLRRFLRDEDGATAIEYGLIAALIAVVIIAGGSTLGTALKGAFTAI 49


>gnl|CDD|34568 COG4961, TadG, Flp pilus assembly protein TadG [Intracellular
          trafficking and secretion].
          Length = 185

 Score = 29.7 bits (66), Expect = 0.20
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 9  FLKDESGATAIEYGLLASLIAVAIIASV 36
          F +D  GA A+E+ L+A  + + +   V
Sbjct: 15 FRRDRRGAAAVEFALVAPPLLLLVFGIV 42


>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
           of unknown function belongs to the
           alpha-D-phosphohexomutase superfamily and is found in
           both archaea and bacteria. The
           alpha-D-phosphohexomutases include several related
           enzymes that catalyze a reversible intramolecular
           phosphoryl transfer on their sugar substrates. Other
           members of this superfamily include phosphoglucosamine
           mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
           the bacterial phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four structural domains (subdomains)
           with a centrally located active site formed by four
           loops, one from each subdomain. All four subdomains are
           included in this alignment model..
          Length = 461

 Score = 26.4 bits (59), Expect = 1.7
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 22  GLLASLIAVAIIASVTTLGGKLSKVFEDIEK 52
           G+LA L+ +  +A     G  LS++  ++E+
Sbjct: 342 GILAGLLLLEAVA---KTGKPLSELVAELEE 369


>gnl|CDD|36328 KOG1112, KOG1112, KOG1112, Ribonucleotide reductase, alpha subunit
           [Nucleotide transport and metabolism].
          Length = 796

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 8   DFLKDESGATAI----EYGLLASLIAVAIIASVTTLGGKLSKVFEDIEK 52
           D L  E+ A+      +Y +LA+ IAV+ +   T      S+V ED+  
Sbjct: 57  DNLAAETAASMTTKHPDYAILAARIAVSNLHKQTK--KVFSEVIEDLHN 103


>gnl|CDD|36560 KOG1346, KOG1346, KOG1346, Programmed cell death 8
           (apoptosis-inducing factor) [Signal transduction
           mechanisms].
          Length = 659

 Score = 25.1 bits (54), Expect = 4.8
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 6   VKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFED 49
           ++  L ++   T I  G L S +A ++       G ++ +VFE+
Sbjct: 340 LEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEE 383


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.135    0.344 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 563,867
Number of extensions: 19205
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 10
Length of query: 56
Length of database: 6,263,737
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,658,685
Effective search space: 158443180
Effective search space used: 158443180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)