RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780733|ref|YP_003065146.1| hypothetical protein
CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>gnl|CDD|183848 PRK13024, PRK13024, bifunctional preprotein translocase subunit
           SecD/SecF; Reviewed.
          Length = 755

 Score = 25.6 bits (57), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 15  GATAIEYGLLASLIAVAIIA 34
           G  AI+ G++A +I  A+I 
Sbjct: 261 GQDAIDAGIIAGIIGFALIF 280


>gnl|CDD|177576 PHA03286, PHA03286, envelope glycoprotein E; Provisional.
          Length = 492

 Score = 24.5 bits (53), Expect = 6.6
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 10  LKDESGATAIEYGLLASLIAVAIIASVTTLGG 41
           +  + G T I   L++S+ A AI+  V  L  
Sbjct: 379 IAFKEGPTVIYSLLVSSMAAGAIL--VVLLFA 408


>gnl|CDD|151095 pfam10552, ORF6C, ORF6C domain.  This domain was identified by
          Iyer and colleagues.
          Length = 114

 Score = 24.1 bits (53), Expect = 8.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 8  DFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLS--------KVFEDIEKGIKA 56
          D L++     A E   +   +   ++     LGGK S        KVF DI + +K 
Sbjct: 25 DDLEENMPLFAGEAKEIQKKVNKRVVE---LLGGKGSPAYKNLRKKVFRDIYRQLKR 78


>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
          Length = 1205

 Score = 24.2 bits (52), Expect = 8.9
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query: 6    VKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDIEKGIK 55
            + +++K+E     +E     S +  + I +  TLG KL    + ++  IK
Sbjct: 1002 ISNYIKEELNVLNVECSNDTSCLDFSAIPNYKTLGVKLGYNLKKVQNKIK 1051


>gnl|CDD|178300 PLN02697, PLN02697, lycopene epsilon cyclase.
          Length = 529

 Score = 24.0 bits (52), Expect = 10.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 1   MKMNIVKDFLKDESGATAIE 20
           ++M +V+  + D +GAT I+
Sbjct: 505 LRMQLVRHLISDPTGATMIK 524


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.135    0.344 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 841,990
Number of extensions: 37253
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 16
Length of query: 56
Length of database: 5,994,473
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,389,449
Effective search space: 150904572
Effective search space used: 150904572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.1 bits)