RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780733|ref|YP_003065146.1| hypothetical protein
CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
          562]}
          Length = 417

 Score = 23.2 bits (48), Expect = 6.0
 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 9  FLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLS 44
          +L D +  +  + G++ + I++  +     L G LS
Sbjct: 33 WLHDINHISKSDTGIIFAAISLFSLLF-QPLFGLLS 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.344 

Gapped
Lambda     K      H
   0.267   0.0384    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 185,870
Number of extensions: 5637
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 56
Length of database: 2,407,596
Length adjustment: 27
Effective length of query: 29
Effective length of database: 2,036,886
Effective search space: 59069694
Effective search space used: 59069694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.8 bits)