Query gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62] Match_columns 62 No_of_seqs 106 out of 228 Neff 4.3 Searched_HMMs 23785 Date Tue May 31 15:32:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780734.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2hi2_A Fimbrial protein; type 4.9 1.9E+02 0.0078 11.8 3.0 17 24-40 4-20 (158) 2 1u8b_A ADA polyprotein; protei 4.8 1.9E+02 0.008 11.8 1.6 20 4-23 108-127 (133) 3 2zih_A Vacuolar protein sortin 4.4 2.1E+02 0.0086 11.6 1.5 23 8-30 78-105 (347) 4 1rh5_B Preprotein translocase 4.3 2.1E+02 0.0088 11.5 6.6 55 5-60 18-72 (74) 5 1zcd_A Na(+)/H(+) antiporter 1 4.1 1.7E+02 0.0071 12.0 0.2 16 3-18 1-16 (388) 6 1y7o_A ATP-dependent CLP prote 3.9 86 0.0036 13.5 -1.4 10 15-24 197-206 (218) 7 3ci9_A Heat shock factor-bindi 3.8 2.3E+02 0.0098 11.3 3.5 23 33-55 8-30 (48) 8 3p2l_A ATP-dependent CLP prote 3.7 1.2E+02 0.0052 12.7 -0.8 10 15-24 180-189 (201) 9 1tg6_A Putative ATP-dependent 3.7 1.3E+02 0.0053 12.7 -0.8 12 14-25 231-242 (277) 10 2jsp_A Transcriptional regulat 3.6 2.1E+02 0.0087 11.6 0.3 20 3-22 31-50 (87) No 1 >2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A* Probab=4.93 E-value=1.9e+02 Score=11.81 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=8.2 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999974 Q gi|254780734|r 24 LVSLIAVVIITSVTTLG 40 (62) Q Consensus 24 IaaLIav~ii~av~~lG 40 (62) |==||.|+||+.+.+++ T Consensus 4 IELlVVIaIIgILaaia 20 (158) T 2hi2_A 4 IELMIVIAIVGILAAVA 20 (158) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 28999999999999999 No 2 >1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A Probab=4.83 E-value=1.9e+02 Score=11.77 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=15.9 Q ss_pred HHHHHHHHCCCCCCHHHHHH Q ss_conf 99999961236831999999 Q gi|254780734|r 4 HIVKNFLQDESGATAIEYGL 23 (62) Q Consensus 4 ~~i~~fl~De~GaTAIEYgL 23 (62) .-+.|.+|.+-|.|-.||-. T Consensus 108 ~~l~R~Fk~~~G~tp~~yl~ 127 (133) T 1u8b_A 108 FHLHRLFKATTGMTPKAWQQ 127 (133) T ss_dssp HHHHHHHHHHTSSCHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHH T ss_conf 99999999998929999999 No 3 >2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS, golgi localization, VPS74, tetramer, golgi apparatus, phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB: 2zii_A Probab=4.39 E-value=2.1e+02 Score=11.60 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=16.2 Q ss_pred HHHHCCCCCC-----HHHHHHHHHHHHH Q ss_conf 9961236831-----9999999999999 Q gi|254780734|r 8 NFLQDESGAT-----AIEYGLLVSLIAV 30 (62) Q Consensus 8 ~fl~De~GaT-----AIEYgLIaaLIav 30 (62) --++|++|.. .++|||-.+++.= T Consensus 78 L~L~D~~G~~s~~~~~l~~aLaGAiL~E 105 (347) T 2zih_A 78 MGLRDREGYLSFWNDSISYALRGCIIIE 105 (347) T ss_dssp HTCCSSSGGGSCCCHHHHHHHHHHHHHH T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 6336788973235430899998999999 No 4 >1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B Probab=4.28 E-value=2.1e+02 Score=11.55 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=41.3 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999612368319999999999999999999997448999999999631577777 Q gi|254780734|r 5 IVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAIVTTSPA 60 (62) Q Consensus 5 ~i~~fl~De~GaTAIEYgLIaaLIav~ii~av~~lG~~l~~~f~~v~~~l~~a~~a 60 (62) --+|+++--+-.+.-||--++-..++.+ ..++.+|=-+.-.+.-+.+-+.+++++ T Consensus 18 ~~~rvlk~~~KP~~~Ef~~i~k~~~iG~-~i~G~IGf~Ikli~~~i~~iIk~~~~~ 72 (74) T 1rh5_B 18 ECRRVWLVLKKPTKDEYLAVAKVTALGI-SLLGIIGYIIHVPATYIKGILKPPTTP 72 (74) T ss_dssp HHHHHHHSEECCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC----- T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 9999999944998999999999999999-999999999999999801456899999 No 5 >1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Probab=4.13 E-value=1.7e+02 Score=12.04 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=11.8 Q ss_pred HHHHHHHHHCCCCCCH Q ss_conf 5999999612368319 Q gi|254780734|r 3 MHIVKNFLQDESGATA 18 (62) Q Consensus 3 m~~i~~fl~De~GaTA 18 (62) ||.++||+|.|....- T Consensus 1 ~~~l~~f~~~e~~~gi 16 (388) T 1zcd_A 1 MKHLHRFFSSDASGGI 16 (388) T ss_dssp --------CCSSHHHH T ss_pred CHHHHHHHHCCHHHHH T ss_conf 9158999851036899 No 6 >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Probab=3.94 E-value=86 Score=13.52 Aligned_cols=10 Identities=30% Similarity=0.880 Sum_probs=4.8 Q ss_pred CCCHHHHHHH Q ss_conf 8319999999 Q gi|254780734|r 15 GATAIEYGLL 24 (62) Q Consensus 15 GaTAIEYgLI 24 (62) +.-|+||||| T Consensus 197 a~EAleyGli 206 (218) T 1y7o_A 197 AQETLEYGFI 206 (218) T ss_dssp HHHHHHHTSC T ss_pred HHHHHHCCCC T ss_conf 9999985998 No 7 >3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} Probab=3.75 E-value=2.3e+02 Score=11.31 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999974489999999996315 Q gi|254780734|r 33 ITSVTTLGGKLKKAFEAIDKAIV 55 (62) Q Consensus 33 i~av~~lG~~l~~~f~~v~~~l~ 55 (62) -..|..+=.++.+.|+.+++++- T Consensus 8 t~~Vq~LL~QmQ~kFq~mSd~Ii 30 (48) T 3ci9_A 8 TSVVQTLLQQMQDKFQTISDQII 30 (48) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999998899999 No 8 >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Probab=3.73 E-value=1.2e+02 Score=12.73 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=4.4 Q ss_pred CCCHHHHHHH Q ss_conf 8319999999 Q gi|254780734|r 15 GATAIEYGLL 24 (62) Q Consensus 15 GaTAIEYgLI 24 (62) +.-|+|||+| T Consensus 180 a~EAleyGli 189 (201) T 3p2l_A 180 ADEAKAYGLI 189 (201) T ss_dssp HHHHHHHTSC T ss_pred HHHHHHCCCC T ss_conf 9999984998 No 9 >1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Probab=3.66 E-value=1.3e+02 Score=12.67 Aligned_cols=12 Identities=42% Similarity=0.542 Sum_probs=6.9 Q ss_pred CCCCHHHHHHHH Q ss_conf 683199999999 Q gi|254780734|r 14 SGATAIEYGLLV 25 (62) Q Consensus 14 ~GaTAIEYgLIa 25 (62) +..-|+|||||- T Consensus 231 sa~EA~eyGliD 242 (277) T 1tg6_A 231 SPMEAQEFGILD 242 (277) T ss_dssp CHHHHHHHTSCS T ss_pred CHHHHHHCCCCC T ss_conf 599999839987 No 10 >2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens} Probab=3.59 E-value=2.1e+02 Score=11.58 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.0 Q ss_pred HHHHHHHHHCCCCCCHHHHH Q ss_conf 59999996123683199999 Q gi|254780734|r 3 MHIVKNFLQDESGATAIEYG 22 (62) Q Consensus 3 m~~i~~fl~De~GaTAIEYg 22 (62) +++++|.+...-|-|.=||= T Consensus 31 ~k~LkRHL~~~hgltp~eYR 50 (87) T 2jsp_A 31 FKSLKRHLTTHHSMTPEEYR 50 (87) T ss_dssp ESBHHHHHHHTTCSCHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHH T ss_conf 55899998887198999999 Done!