RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component
[Candidatus Liberibacter asiaticus str. psy62]
         (62 letters)



>gnl|CDD|113726 pfam04964, Flp_Fap, Flp/Fap pilin component. 
          Length = 47

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 31/46 (67%), Positives = 36/46 (78%)

Query: 9  FLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAI 54
          FL+DESGATAIEYGL+ +LIAVVII  VTTLG  LK  F +I  A+
Sbjct: 1  FLKDESGATAIEYGLIAALIAVVIIAYVTTLGTALKTKFTSIGTAL 46


>gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp
          [Intracellular trafficking and secretion].
          Length = 58

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 30/57 (52%), Positives = 39/57 (68%)

Query: 3  MHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAIVTTSP 59
            +++ FL+DE GATAIEYGL+ +LIAVVII   +TLG  LK AF AI  A+   + 
Sbjct: 2  KKLLRRFLRDEDGATAIEYGLIAALIAVVIIAGGSTLGTALKGAFTAIGAALTGAAA 58


>gnl|CDD|34568 COG4961, TadG, Flp pilus assembly protein TadG [Intracellular
          trafficking and secretion].
          Length = 185

 Score = 25.9 bits (56), Expect = 2.7
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 4  HIVKNFLQDESGATAIEYGLLVSLIAVVIITSV 36
           +++ F +D  GA A+E+ L+   + +++   V
Sbjct: 10 GLLRRFRRDRRGAAAVEFALVAPPLLLLVFGIV 42


>gnl|CDD|110935 pfam01983, CofC, Guanylyl transferase CofC like.  Coenzyme F420
          is a hydride carrier cofactor that functions during
          methanogenesis. This family of proteins represents
          CofC, a nucleotidyl transferase that is involved in
          coenzyme F420 biosynthesis. CofC has been shown to
          catalyse the formation of
          lactyl-2-diphospho-5'-guanosine from
          2-phospho-L-lactate and GTP.
          Length = 217

 Score = 24.5 bits (53), Expect = 6.3
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 5  IVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLG------------GKLKKAFEAIDK 52
          +++  L D   A      L+ S   VV+ +++  LG              + +AF A ++
Sbjct: 29 LLRLMLLDVIDALKPVDVLVFSEDEVVLPSALDVLGVEVVVETESDLNTAVNQAFMAPEE 88

Query: 53 AIVTTSPA 60
          A V   P+
Sbjct: 89 APVIIIPS 96


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.131    0.336 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 611,773
Number of extensions: 22556
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 9
Length of query: 62
Length of database: 6,263,737
Length adjustment: 34
Effective length of query: 28
Effective length of database: 5,529,031
Effective search space: 154812868
Effective search space used: 154812868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)