RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62] (62 letters) >3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I Length = 138 Score = 24.5 bits (53), Expect = 5.8 Identities = 10/44 (22%), Positives = 17/44 (38%) Query: 16 ATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAIVTTSP 59 AI + L+A +LKKAF + D+ ++ Sbjct: 73 VYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADS 116 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.131 0.336 Gapped Lambda K H 0.267 0.0605 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 465,924 Number of extensions: 15775 Number of successful extensions: 55 Number of sequences better than 10.0: 1 Number of HSP's gapped: 55 Number of HSP's successfully gapped: 3 Length of query: 62 Length of database: 5,693,230 Length adjustment: 33 Effective length of query: 29 Effective length of database: 4,893,178 Effective search space: 141902162 Effective search space used: 141902162 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.3 bits)