RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component
[Candidatus Liberibacter asiaticus str. psy62]
         (62 letters)



>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein,
           flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC
           7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I
          Length = 138

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 16  ATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAIVTTSP 59
             AI   +   L+A            +LKKAF + D+ ++    
Sbjct: 73  VYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADS 116


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.131    0.336 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 465,924
Number of extensions: 15775
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 62
Length of database: 5,693,230
Length adjustment: 33
Effective length of query: 29
Effective length of database: 4,893,178
Effective search space: 141902162
Effective search space used: 141902162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)