BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component
[Candidatus Liberibacter asiaticus str. psy62]
(62 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str.
psy62]
Length = 62
Score = 122 bits (305), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAIVTTSPA 60
MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAIVTTSPA
Sbjct: 1 MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAIVTTSPA 60
Query: 61 AS 62
AS
Sbjct: 61 AS 62
>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 56
Score = 85.1 bits (209), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 47/54 (87%)
Query: 1 MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAI 54
MKM+IVK+FL+DESGATAIEYGLL SLIAV II SVTTLGGKL K FE I+K I
Sbjct: 1 MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDIEKGI 54
>gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 58
Score = 83.2 bits (204), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 42/50 (84%)
Query: 1 MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAI 50
MKMHIVKNFLQDESGATAIEYGLL SLIAV II SVTTLGGKL F I
Sbjct: 1 MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADI 50
>gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 120
Score = 63.9 bits (154), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 41/50 (82%)
Query: 1 MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAI 50
MKM+I+K L++ SGATAIEYGLL SL++V II++V+TLG ++K ++ I
Sbjct: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50
>gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 60
Score = 40.0 bits (92), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 4 HIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFE 48
+ + L+DESGA AIEYG+LV+LIAV II +VT LGG LK FE
Sbjct: 3 NCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFE 47
>gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 75
Score = 28.5 bits (62), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 20 EYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAI--VTTSPA 60
EYG++ +LIAV II +VT LGG LK AFE + + TT P
Sbjct: 6 EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKPP 48
>gi|254780571|ref|YP_003064984.1| hypothetical protein CLIBASIA_02290 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 182
Score = 21.2 bits (43), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 3 MHIVKN----FLQDESGATAIEYG-----LLVSLIAVVIITSVTTLGGKLKK 45
M +KN FL E+G A+E LL+ +AV IT + TL +L +
Sbjct: 1 MKCIKNYILRFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLTR 52
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 20.8 bits (42), Expect = 5.0, Method: Composition-based stats.
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 40 GGKLKKAFEAID 51
G KLK AFE++D
Sbjct: 768 GLKLKPAFESVD 779
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 853
Score = 20.4 bits (41), Expect = 5.5, Method: Composition-based stats.
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 4 HIVKNFLQDESGA 16
H++ FL+DE GA
Sbjct: 33 HVLHIFLEDEQGA 45
>gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter
asiaticus str. psy62]
Length = 384
Score = 20.4 bits (41), Expect = 6.5, Method: Composition-based stats.
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 7 KNFLQDESGATAIEYG 22
K L D+ G A+EYG
Sbjct: 62 KRALYDQGGHEALEYG 77
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.131 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,652
Number of Sequences: 1233
Number of extensions: 828
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 62
length of database: 328,796
effective HSP length: 34
effective length of query: 28
effective length of database: 286,874
effective search space: 8032472
effective search space used: 8032472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.8 bits)
S2: 31 (16.5 bits)