Query         gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 75
No_of_seqs    105 out of 117
Neff          2.6 
Searched_HMMs 23785
Date          Mon May 30 13:53:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780735.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2akh_Z Preprotein translocase   16.4      63  0.0026   14.2   4.3   37    8-44     31-67  (111)
  2 2hi2_A Fimbrial protein; type   12.0      85  0.0036   13.5   2.9   18    9-26      3-20  (158)
  3 3lr2_A Major ampullate spidroi   7.9 1.2E+02  0.0048   12.8   1.2   29   15-43     76-104 (137)
  4 1oqw_A Fimbrial protein; type    7.7 1.3E+02  0.0053   12.6   2.9   18    9-26      3-20  (144)
  5 2kdu_B MUNC13-1, protein UNC-1   7.4      96   0.004   13.3   0.6   26   31-56     10-36  (36)
  6 1v0w_A Phospholipase D; hydrol   7.1      97  0.0041   13.2   0.5   17   54-72    452-468 (506)
  7 2k3q_A TUSP1; eggcase SILK, st   6.2 1.3E+02  0.0055   12.5   0.8   30   15-44     40-69  (118)
  8 3mi9_C Protein TAT; P-TEFB, HI   5.1 1.8E+02  0.0075   11.8   2.8   27   48-74     14-49  (86)
  9 2ims_A Apoptosis regulator BAK   4.4   2E+02  0.0086   11.6   2.1   22    7-28    110-131 (171)
 10 2kjf_A Carnocyclin-A; circular   4.4   2E+02  0.0086   11.5   0.9   26   18-43     27-52  (60)

No 1  
>2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z
Probab=16.44  E-value=63  Score=14.21  Aligned_cols=37  Identities=14%  Similarity=0.127  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999999999861048899999975421667
Q gi|254780735|r    8 GMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQT   44 (75)
Q Consensus         8 GLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls~aT   44 (75)
                      ++++.++....+...|.-|.++-..|+++-.++.+-+
T Consensus        31 ~~~~~~~~a~~i~~~T~kG~~~~~f~~e~r~ElkKV~   67 (111)
T 2akh_Z           31 AVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVI   67 (111)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999982303589999999999984386


No 2  
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=12.02  E-value=85  Score=13.53  Aligned_cols=18  Identities=17%  Similarity=0.512  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999861
Q gi|254780735|r    9 MMAALIAVAIIAAVTKLG   26 (75)
Q Consensus         9 LIaaLIAVaII~avt~lG   26 (75)
                      ||--||-|+||+-+.+++
T Consensus         3 LIELlVVIaIIgILaaia   20 (158)
T 2hi2_A            3 LIELMIVIAIVGILAAVA   20 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             428999999999999999


No 3  
>3lr2_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT wild- structural protein; 1.70A {Euprosthenops australis} PDB: 3lr8_A* 3lr6_A* 3lrd_A*
Probab=7.87  E-value=1.2e+02  Score=12.84  Aligned_cols=29  Identities=38%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999986104889999997542166
Q gi|254780735|r   15 AVAIIAAVTKLGGSLKGAFEEVANQMSHQ   43 (75)
Q Consensus        15 AVaII~avt~lG~~L~~~F~~Ia~~Ls~a   43 (75)
                      +++=|+++-.=|.++...-+.|++.|+++
T Consensus        76 SiAEIa~~E~gg~~~~~~t~aI~~aL~~A  104 (137)
T 3lr2_A           76 SMAEIAASEEGGGSLSTKTSSIASAMSNA  104 (137)
T ss_dssp             HHHHHHHHSCCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999998256631898999999999999


No 4  
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=7.67  E-value=1.3e+02  Score=12.62  Aligned_cols=18  Identities=28%  Similarity=0.552  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999861
Q gi|254780735|r    9 MMAALIAVAIIAAVTKLG   26 (75)
Q Consensus         9 LIaaLIAVaII~avt~lG   26 (75)
                      ||--||.|+||+-+.++.
T Consensus         3 LIELmvViaIigILaaia   20 (144)
T 1oqw_A            3 LIELMIVVAIIGILAAIA   20 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             689999999999999999


No 5  
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis}
Probab=7.40  E-value=96  Score=13.25  Aligned_cols=26  Identities=15%  Similarity=0.027  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf             9999997542166-7789856436788
Q gi|254780735|r   31 GAFEEVANQMSHQ-TTKPPVTRPVTPT   56 (75)
Q Consensus        31 ~~F~~Ia~~Ls~a-Tttpp~t~p~tp~   56 (75)
                      -.|++|--+|-.+ .-.+|+.+||.++
T Consensus        10 Ra~nKVRlQLQE~~~e~~~~~s~w~kg   36 (36)
T 2kdu_B           10 RAFNKVRMQLQEARGEGEMSKSLWFKG   36 (36)
T ss_dssp             HHHHHHHHHHHHHTTCCCCTTHHHHTC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             999999999997126789876533369


No 6  
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=7.06  E-value=97  Score=13.24  Aligned_cols=17  Identities=24%  Similarity=0.274  Sum_probs=10.7

Q ss_pred             CCCCCCCCCHHHHCCCCCC
Q ss_conf             7888899851121025444
Q gi|254780735|r   54 TPTSTEMPPRSRYNTGIGY   72 (75)
Q Consensus        54 tp~ss~~~~r~~~~~~~~~   72 (75)
                      .=||.|+.|||  |+.+|+
T Consensus       452 ~VGSaNldprS--~~E~~~  468 (506)
T 1v0w_A          452 YIGSKNLYPSW--LQDFGY  468 (506)
T ss_dssp             EEESCCSSCCC--SBCEEE
T ss_pred             EEECCCCCCCC--CCCCCE
T ss_conf             99652389865--482418


No 7  
>2k3q_A TUSP1; eggcase SILK, structural protein; NMR {Nephila antipodiana}
Probab=6.17  E-value=1.3e+02  Score=12.54  Aligned_cols=30  Identities=17%  Similarity=0.168  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999861048899999975421667
Q gi|254780735|r   15 AVAIIAAVTKLGGSLKGAFEEVANQMSHQT   44 (75)
Q Consensus        15 AVaII~avt~lG~~L~~~F~~Ia~~Ls~aT   44 (75)
                      +++-|++.--=|.++...-+.|++.|+++-
T Consensus        40 S~AEia~~EsgG~~~~~ktnai~~aL~~aF   69 (118)
T 2k3q_A           40 SLADLLISESSGSSYQTQISALTNILSDCF   69 (118)
T ss_dssp             HHHHHHTTTTSSCSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             999999997136539999999999999999


No 8  
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=5.12  E-value=1.8e+02  Score=11.85  Aligned_cols=27  Identities=30%  Similarity=0.572  Sum_probs=17.2

Q ss_pred             CCCCCCCCCCCCCCCHHHHC---------CCCCCCC
Q ss_conf             85643678888998511210---------2544456
Q gi|254780735|r   48 PVTRPVTPTSTEMPPRSRYN---------TGIGYGR   74 (75)
Q Consensus        48 p~t~p~tp~ss~~~~r~~~~---------~~~~~~~   74 (75)
                      |++.|.||-+.-.--+.-|.         -||-|||
T Consensus        14 PgsqP~t~Cn~CyCK~Cc~HCq~CFl~KGLGIsYgR   49 (86)
T 3mi9_C           14 PGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGR   49 (86)
T ss_dssp             CCCCCSSCCCSCCSTTGGGSSHHHHHHTTSCCCSCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             798888867573010056674787730466623055


No 9  
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 2jby_B 2voh_B*
Probab=4.38  E-value=2e+02  Score=11.55  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999999986104
Q gi|254780735|r    7 YGMMAALIAVAIIAAVTKLGGS   28 (75)
Q Consensus         7 YGLIaaLIAVaII~avt~lG~~   28 (75)
                      +|-|++|++.+-..++-.+-.+
T Consensus       110 WGRIval~~F~~~la~~~~~~~  131 (171)
T 2ims_A          110 WGRVVALLGFGYRLALHVYQHG  131 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999999859


No 10 
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=4.36  E-value=2e+02  Score=11.54  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999986104889999997542166
Q gi|254780735|r   18 IIAAVTKLGGSLKGAFEEVANQMSHQ   43 (75)
Q Consensus        18 II~avt~lG~~L~~~F~~Ia~~Ls~a   43 (75)
                      ||.-+..+.-.|+++|..+..++...
T Consensus        27 iisilggvtvglsgvftavkaaiakq   52 (60)
T 2kjf_A           27 IISILGGVTVGLSGVFTAVKAAIAKQ   52 (60)
T ss_dssp             HHHHHCSSCTTTHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCEECHHHHHHHHHHHHHHH
T ss_conf             88765472550035799999999998


Done!