Query gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 75 No_of_seqs 105 out of 117 Neff 2.6 Searched_HMMs 23785 Date Mon May 30 13:53:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780735.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2akh_Z Preprotein translocase 16.4 63 0.0026 14.2 4.3 37 8-44 31-67 (111) 2 2hi2_A Fimbrial protein; type 12.0 85 0.0036 13.5 2.9 18 9-26 3-20 (158) 3 3lr2_A Major ampullate spidroi 7.9 1.2E+02 0.0048 12.8 1.2 29 15-43 76-104 (137) 4 1oqw_A Fimbrial protein; type 7.7 1.3E+02 0.0053 12.6 2.9 18 9-26 3-20 (144) 5 2kdu_B MUNC13-1, protein UNC-1 7.4 96 0.004 13.3 0.6 26 31-56 10-36 (36) 6 1v0w_A Phospholipase D; hydrol 7.1 97 0.0041 13.2 0.5 17 54-72 452-468 (506) 7 2k3q_A TUSP1; eggcase SILK, st 6.2 1.3E+02 0.0055 12.5 0.8 30 15-44 40-69 (118) 8 3mi9_C Protein TAT; P-TEFB, HI 5.1 1.8E+02 0.0075 11.8 2.8 27 48-74 14-49 (86) 9 2ims_A Apoptosis regulator BAK 4.4 2E+02 0.0086 11.6 2.1 22 7-28 110-131 (171) 10 2kjf_A Carnocyclin-A; circular 4.4 2E+02 0.0086 11.5 0.9 26 18-43 27-52 (60) No 1 >2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z Probab=16.44 E-value=63 Score=14.21 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999999999999999861048899999975421667 Q gi|254780735|r 8 GMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQT 44 (75) Q Consensus 8 GLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls~aT 44 (75) ++++.++....+...|.-|.++-..|+++-.++.+-+ T Consensus 31 ~~~~~~~~a~~i~~~T~kG~~~~~f~~e~r~ElkKV~ 67 (111) T 2akh_Z 31 AVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVI 67 (111) T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999982303589999999999984386 No 2 >2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A* Probab=12.02 E-value=85 Score=13.53 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999861 Q gi|254780735|r 9 MMAALIAVAIIAAVTKLG 26 (75) Q Consensus 9 LIaaLIAVaII~avt~lG 26 (75) ||--||-|+||+-+.+++ T Consensus 3 LIELlVVIaIIgILaaia 20 (158) T 2hi2_A 3 LIELMIVIAIVGILAAVA 20 (158) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 428999999999999999 No 3 >3lr2_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT wild- structural protein; 1.70A {Euprosthenops australis} PDB: 3lr8_A* 3lr6_A* 3lrd_A* Probab=7.87 E-value=1.2e+02 Score=12.84 Aligned_cols=29 Identities=38% Similarity=0.424 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999986104889999997542166 Q gi|254780735|r 15 AVAIIAAVTKLGGSLKGAFEEVANQMSHQ 43 (75) Q Consensus 15 AVaII~avt~lG~~L~~~F~~Ia~~Ls~a 43 (75) +++=|+++-.=|.++...-+.|++.|+++ T Consensus 76 SiAEIa~~E~gg~~~~~~t~aI~~aL~~A 104 (137) T 3lr2_A 76 SMAEIAASEEGGGSLSTKTSSIASAMSNA 104 (137) T ss_dssp HHHHHHHHSCCSSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 99999998256631898999999999999 No 4 >1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1 Probab=7.67 E-value=1.3e+02 Score=12.62 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999861 Q gi|254780735|r 9 MMAALIAVAIIAAVTKLG 26 (75) Q Consensus 9 LIaaLIAVaII~avt~lG 26 (75) ||--||.|+||+-+.++. T Consensus 3 LIELmvViaIigILaaia 20 (144) T 1oqw_A 3 LIELMIVVAIIGILAAIA 20 (144) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 689999999999999999 No 5 >2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis} Probab=7.40 E-value=96 Score=13.25 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=17.9 Q ss_pred HHHHHHHHHHCCC-CCCCCCCCCCCCC Q ss_conf 9999997542166-7789856436788 Q gi|254780735|r 31 GAFEEVANQMSHQ-TTKPPVTRPVTPT 56 (75) Q Consensus 31 ~~F~~Ia~~Ls~a-Tttpp~t~p~tp~ 56 (75) -.|++|--+|-.+ .-.+|+.+||.++ T Consensus 10 Ra~nKVRlQLQE~~~e~~~~~s~w~kg 36 (36) T 2kdu_B 10 RAFNKVRMQLQEARGEGEMSKSLWFKG 36 (36) T ss_dssp HHHHHHHHHHHHHTTCCCCTTHHHHTC T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 999999999997126789876533369 No 6 >1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Probab=7.06 E-value=97 Score=13.24 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=10.7 Q ss_pred CCCCCCCCCHHHHCCCCCC Q ss_conf 7888899851121025444 Q gi|254780735|r 54 TPTSTEMPPRSRYNTGIGY 72 (75) Q Consensus 54 tp~ss~~~~r~~~~~~~~~ 72 (75) .=||.|+.||| |+.+|+ T Consensus 452 ~VGSaNldprS--~~E~~~ 468 (506) T 1v0w_A 452 YIGSKNLYPSW--LQDFGY 468 (506) T ss_dssp EEESCCSSCCC--SBCEEE T ss_pred EEECCCCCCCC--CCCCCE T ss_conf 99652389865--482418 No 7 >2k3q_A TUSP1; eggcase SILK, structural protein; NMR {Nephila antipodiana} Probab=6.17 E-value=1.3e+02 Score=12.54 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999861048899999975421667 Q gi|254780735|r 15 AVAIIAAVTKLGGSLKGAFEEVANQMSHQT 44 (75) Q Consensus 15 AVaII~avt~lG~~L~~~F~~Ia~~Ls~aT 44 (75) +++-|++.--=|.++...-+.|++.|+++- T Consensus 40 S~AEia~~EsgG~~~~~ktnai~~aL~~aF 69 (118) T 2k3q_A 40 SLADLLISESSGSSYQTQISALTNILSDCF 69 (118) T ss_dssp HHHHHHTTTTSSCSCHHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 999999997136539999999999999999 No 8 >3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A Probab=5.12 E-value=1.8e+02 Score=11.85 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=17.2 Q ss_pred CCCCCCCCCCCCCCCHHHHC---------CCCCCCC Q ss_conf 85643678888998511210---------2544456 Q gi|254780735|r 48 PVTRPVTPTSTEMPPRSRYN---------TGIGYGR 74 (75) Q Consensus 48 p~t~p~tp~ss~~~~r~~~~---------~~~~~~~ 74 (75) |++.|.||-+.-.--+.-|. -||-||| T Consensus 14 PgsqP~t~Cn~CyCK~Cc~HCq~CFl~KGLGIsYgR 49 (86) T 3mi9_C 14 PGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGR 49 (86) T ss_dssp CCCCCSSCCCSCCSTTGGGSSHHHHHHTTSCCCSCC T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 798888867573010056674787730466623055 No 9 >2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 2jby_B 2voh_B* Probab=4.38 E-value=2e+02 Score=11.55 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999999986104 Q gi|254780735|r 7 YGMMAALIAVAIIAAVTKLGGS 28 (75) Q Consensus 7 YGLIaaLIAVaII~avt~lG~~ 28 (75) +|-|++|++.+-..++-.+-.+ T Consensus 110 WGRIval~~F~~~la~~~~~~~ 131 (171) T 2ims_A 110 WGRVVALLGFGYRLALHVYQHG 131 (171) T ss_dssp HHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999999859 No 10 >2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum} Probab=4.36 E-value=2e+02 Score=11.54 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999986104889999997542166 Q gi|254780735|r 18 IIAAVTKLGGSLKGAFEEVANQMSHQ 43 (75) Q Consensus 18 II~avt~lG~~L~~~F~~Ia~~Ls~a 43 (75) ||.-+..+.-.|+++|..+..++... T Consensus 27 iisilggvtvglsgvftavkaaiakq 52 (60) T 2kjf_A 27 IISILGGVTVGLSGVFTAVKAAIAKQ 52 (60) T ss_dssp HHHHHCSSCTTTHHHHHHHHHHHHHT T ss_pred HHHHHCCCEECHHHHHHHHHHHHHHH T ss_conf 88765472550035799999999998 Done!