BLAST/PSIBLAST alignment of GI: 254780735 and GI: 33596964 at iteration 2
>gi|33596964|ref|NP_884607.1| hypothetical protein BPP2371 [Bordetella parapertussis 12822] Length = 58
>gi|33600806|ref|NP_888366.1| hypothetical protein BB1821 [Bordetella bronchiseptica RB50] Length = 58
>gi|33566415|emb|CAE37668.1| putative membrane protein [Bordetella parapertussis] Length = 58
>gi|33568406|emb|CAE32318.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 58
 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 6  EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQ 43
          EYG++  LIAV II +V+ LG +LKG F+ +  ++S +
Sbjct: 19 EYGLIVGLIAVVIIGSVSLLGETLKGFFDTIQTELSAE 56