RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780735|ref|YP_003065148.1| hypothetical protein
CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62]
(75 letters)
>gnl|CDD|152989 pfam12555, TPPK_C, Thiamine pyrophosphokinase C terminal. This
domain family is found in bacteria, and is
approximately 50 amino acids in length. The proteins in
this family catalyses the pyrophosphorylation of
thiamine in yeast and synthesizes thiamine
pyrophosphate (TPP), a thiamine coenzyme.
Length = 53
Score = 27.5 bits (62), Expect = 0.84
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 9 MMAALIAVAIIAAVTKLGGSL 29
++AAL+A+A+ V+ G S
Sbjct: 20 VLAALVALAVALLVSPAGQSF 40
>gnl|CDD|182822 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 8 GMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQ 43
M +A A I V G SL A + ++S +
Sbjct: 1 SMNLRALAAAAILQVVDQGQSLSAALPALQQKVSDK 36
>gnl|CDD|132189 TIGR03145, cyt_nit_nrfE, cytochrome c nitrate reductase biogenesis
protein NrfE. Members of this protein family closely
resemble the CcmF protein of the CcmABCDEFGH system, or
system I, for c-type cytochrome biogenesis
(GenProp0678). Members are found, as a rule, next to
closely related paralogs of CcmG and CcmH and always
located near other genes associated with the cytochrome
c nitrite reductase enzyme complex. As a rule, members
are found in species that also encode bona fide members
of the CcmF, CcmG, and CcmH families.
Length = 628
Score = 25.8 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 1 MQRLYEYGMMAALIAVAIIAAVTKLGGSLKGAF-EEVANQMSHQTTKP 47
+L + GM+ A + VAI A +G + F E+ +++ Q +P
Sbjct: 478 TLKLRQLGMVLAHLGVAICA----IGAIMVSYFGSEIGVRLAPQQQQP 521
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional.
Length = 961
Score = 25.3 bits (56), Expect = 3.2
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 19/59 (32%)
Query: 2 QRLYEYGMMAALI-------AVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKPPVTRPV 53
QR Y +M A+I +A +AA T F V N + P +T PV
Sbjct: 223 QRYYSANLMKAVIYSNQPLPELAKLAADT---------FGRVPN---KNASVPEITVPV 269
>gnl|CDD|149519 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 25.2 bits (56), Expect = 3.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 1 MQRLYEYGMMAA---LIAVAIIAAV 22
M+ L EYG+ A + VAIIA V
Sbjct: 1 MEFLAEYGLFLAKTVTVVVAIIAVV 25
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 24.8 bits (54), Expect = 5.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 32 AFEEVANQMSHQTTKPPVTRPV 53
FE+ AN + + +PPV +P+
Sbjct: 1157 EFEDTANNLILEGKQPPVGQPL 1178
>gnl|CDD|130392 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase. This
model describes O-succinylhomoserine sulfhydrylase, one
of several related pyridoxal phosphate-dependent enzymes
of cysteine and methionine metabolism. This enzyme is
part of an alternative pathway of homocysteine
biosynthesis, a step in methionine biosynthesis.
Length = 380
Score = 24.8 bits (54), Expect = 5.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 45 TKPPVTRPVTPTSTEMPPRSRYNTGIGYG 73
K +T P T T M P R GIG G
Sbjct: 330 AKSTITHPATTTHGRMQPEERAAAGIGDG 358
>gnl|CDD|139352 PRK13029, PRK13029, 2-oxoacid ferredoxin oxidoreductase;
Provisional.
Length = 1186
Score = 24.4 bits (53), Expect = 7.1
Identities = 24/74 (32%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 12 ALIAVAIIAAVTKLGGSLK------------GAFEEVANQMSHQTTKPPVTRPVTP--TS 57
ALIA AI + LG A E A Q T + P P TS
Sbjct: 406 ALIAKAIARRLAALGLPADVAARMDARVADIEAKERAAAQPRLLTERKPWFCSGCPHNTS 465
Query: 58 TEMPPRSRYNTGIG 71
T +P SR GIG
Sbjct: 466 TRVPEGSRALAGIG 479
>gnl|CDD|178374 PLN02775, PLN02775, Probable dihydrodipicolinate reductase.
Length = 286
Score = 24.2 bits (53), Expect = 8.1
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 15 AVAIIAAVTKLGGSLKGAFEEVANQM--SHQTTK 46
VA AA+ + GAF ++ SHQ TK
Sbjct: 140 VVAFQAAMEIMAEQFPGAFSGYTLEVVESHQATK 173
>gnl|CDD|148367 pfam06724, DUF1206, Domain of Unknown Function (DUF1206). This
region consists of two a pair of transmembrane helices
and occurs three times in each of the family member
proteins.
Length = 73
Score = 24.0 bits (53), Expect = 8.7
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 7 YGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQ 39
Y ++ L A + G GA +A+Q
Sbjct: 11 YLLIGVLALQAALGGGGGGAGGTSGALATLASQ 43
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.129 0.368
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,240,635
Number of extensions: 60015
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 29
Length of query: 75
Length of database: 5,994,473
Length adjustment: 45
Effective length of query: 30
Effective length of database: 5,022,113
Effective search space: 150663390
Effective search space used: 150663390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)