RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780735|ref|YP_003065148.1| hypothetical protein
CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)



>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
          oxidoreductase, N-terminal domain {Zymomonas mobilis
          [TaxId: 542]}
          Length = 221

 Score = 23.1 bits (48), Expect = 6.4
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 48 PVTRPVTPTSTEMPPRSRYNTG-IGYGR 74
          P  RP+      MP   R+    +G G+
Sbjct: 16 PAGRPMPYAIRPMPEDRRFGYAIVGLGK 43


>d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella
           succinogenes [TaxId: 844]}
          Length = 198

 Score = 23.1 bits (49), Expect = 6.7
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 6/40 (15%)

Query: 36  VANQMSHQTTKPPVT-RPVTPTSTEMPPRSRYNTGIGYGR 74
           +A+  + + T P +    +     E+ P  R     GYG 
Sbjct: 108 LASWPNPEQTLPTLEYEALDVNEMEIAPGYR-----GYGA 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.368 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 260,551
Number of extensions: 8630
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 4
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)