BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780735|ref|YP_003065148.1| hypothetical protein
CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 75

 Score =  153 bits (386), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MQRLYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKPPVTRPVTPTSTEM 60
          MQRLYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKPPVTRPVTPTSTEM
Sbjct: 1  MQRLYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKPPVTRPVTPTSTEM 60

Query: 61 PPRSRYNTGIGYGRT 75
          PPRSRYNTGIGYGRT
Sbjct: 61 PPRSRYNTGIGYGRT 75


>gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 58

 Score = 45.4 bits (106), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 30/36 (83%)

Query: 6  EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMS 41
          EYG++A+LIAVAIIA+VT LGG L   F +++++++
Sbjct: 20 EYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55


>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score = 45.1 bits (105), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 26/31 (83%)

Query: 6  EYGMMAALIAVAIIAAVTKLGGSLKGAFEEV 36
          EYG++A+LIAVAIIA+VT LGG L   FE++
Sbjct: 20 EYGLLASLIAVAIIASVTTLGGKLSKVFEDI 50


>gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 120

 Score = 44.3 bits (103), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 6  EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKP--PVTRPVTPTSTE 59
          EYG++A+L++VAII+AV+ LG  +KG ++ ++ ++      P  P + P+ P S+ 
Sbjct: 20 EYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSN 75


>gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 62

 Score = 42.7 bits (99), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 6  EYGMMAALIAVAIIAAVTKLGGSLKGAFEEV 36
          EYG++ +LIAV II +VT LGG LK AFE +
Sbjct: 20 EYGLLVSLIAVVIITSVTTLGGKLKKAFEAI 50


>gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 60

 Score = 36.6 bits (83), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 33/37 (89%)

Query: 6  EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSH 42
          EYGM+ ALIAVAIIAAVT LGGSLKG FEE AN++S+
Sbjct: 19 EYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISN 55


>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 342

 Score = 20.8 bits (42), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 31  GAFEEVANQMSHQTTKPPVTR 51
           G  ++  NQ+S  TT P V R
Sbjct: 255 GITQKNINQVSKDTTNPDVQR 275


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.129    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,223
Number of Sequences: 1233
Number of extensions: 1050
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 75
length of database: 328,796
effective HSP length: 45
effective length of query: 30
effective length of database: 273,311
effective search space:  8199330
effective search space used:  8199330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)