Query gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 60
No_of_seqs 109 out of 244
Neff 4.6
Searched_HMMs 33803
Date Wed Jun 1 14:10:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780736.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2wbi_A Acyl-COA dehydrogenase 15.3 48 0.0014 15.6 0.5 27 7-33 84-110 (276)
2 >1kcz_A Beta-methylaspartase; 6.5 2.1E+02 0.0062 12.3 2.2 20 11-30 123-142 (148)
3 >2nxx_E Ecdysone receptor (ECR 6.2 2.2E+02 0.0064 12.2 2.2 22 8-29 23-44 (89)
4 >1n0q_A 3ANK, 3 ankyrin repeat 5.8 2.3E+02 0.0068 12.1 1.1 22 9-30 63-84 (93)
5 >1m56_D Cytochrome C oxidase; 5.3 2.5E+02 0.0073 11.9 1.3 18 16-33 33-50 (51)
6 >3i6v_A Periplasmic His/Glu/Gl 5.2 35 0.001 16.2 -3.4 17 10-26 31-47 (83)
7 >2gpj_A Siderophore-interactin 4.5 2.5E+02 0.0075 11.9 0.6 16 1-16 95-110 (122)
8 >1qle_D Cytochrome AA3, ccytoc 4.4 2.9E+02 0.0085 11.6 0.8 18 16-33 25-42 (43)
9 >3ci9_A Heat shock factor-bind 4.2 3E+02 0.009 11.5 3.5 24 31-54 7-30 (48)
10 >1kko_A 3-methylaspartate ammo 4.0 3.1E+02 0.0092 11.4 2.2 19 11-29 87-105 (112)
No 1
>>2wbi_A Acyl-COA dehydrogenase family member 11; human, polymorphism, phosphoprotein, oxidoreductase, alternative splicing; HET: FAD; 2.80A {Homo sapiens} (A:1-111,A:264-428)
Probab=15.33 E-value=48 Score=15.58 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=21.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 995034682399999999999999999
Q gi|254780736|r 7 KLLKDESGAAAIEYGMLVALIAVAIIA 33 (60)
Q Consensus 7 ~f~~De~GaTAIEYgLIaalIav~ii~ 33 (60)
-|+-++.|-|-.||++++-...-..++
T Consensus 84 l~lp~~~gl~~~eya~~~e~~g~s~~~ 110 (276)
T 2wbi_A 84 LFLPAVSGLSHVDYALIAEETGKCFFA 110 (276)
T ss_dssp TTCHHHHCCCHHHHHHHHHHHTTSTTH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 779641389889999999997530456
No 2
>>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} (A:1-148)
Probab=6.48 E-value=2.1e+02 Score=12.31 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 34682399999999999999
Q gi|254780736|r 11 DESGAAAIEYGMLVALIAVA 30 (60)
Q Consensus 11 De~GaTAIEYgLIaalIav~ 30 (60)
.++=-|||+||+=-+|.--+
T Consensus 123 g~rLhtAiRYGvSQalL~A~ 142 (148)
T 1kcz_A 123 GNRLHTAIRYGITQAILDAV 142 (148)
T ss_dssp TEECCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 94057899998999999999
No 3
>>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum} (E:1-30,E:151-209)
Probab=6.19 E-value=2.2e+02 Score=12.22 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=17.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9503468239999999999999
Q gi|254780736|r 8 LLKDESGAAAIEYGMLVALIAV 29 (60)
Q Consensus 8 f~~De~GaTAIEYgLIaalIav 29 (60)
++.+|---+-.||+|+.|++-.
T Consensus 23 ~~~~~~~~d~~EyaLLkAIvLf 44 (89)
T 2nxx_E 23 YFQNEYEHDNAEYALLTAIVIF 44 (89)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9998745899999999999995
No 4
>>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} (A:)
Probab=5.77 E-value=2.3e+02 Score=12.09 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=15.3
Q ss_pred HHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5034682399999999999999
Q gi|254780736|r 9 LKDESGAAAIEYGMLVALIAVA 30 (60)
Q Consensus 9 ~~De~GaTAIEYgLIaalIav~ 30 (60)
.+|+.|.|++.|+..-+-..++
T Consensus 63 ~~d~~g~T~Lh~A~~~~~~~~~ 84 (93)
T 1n0q_A 63 AKDKNGRTPLHLAARNGHLEVV 84 (93)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCCCCCCCHHHHHHHCCCHHHH
T ss_conf 3434447559999995889999
No 5
>>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (D:)
Probab=5.31 E-value=2.5e+02 Score=11.94 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 399999999999999999
Q gi|254780736|r 16 AAIEYGMLVALIAVAIIA 33 (60)
Q Consensus 16 TAIEYgLIaalIav~ii~ 33 (60)
|-.-+.+|+-||.++++.
T Consensus 33 t~~~i~ii~~liFlAif~ 50 (51)
T 1m56_D 33 TWAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999962
No 6
>>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} (A:91-173)
Probab=5.18 E-value=35 Score=16.25 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=10.7
Q ss_pred HCCCCCCHHHHHHHHHH
Q ss_conf 03468239999999999
Q gi|254780736|r 10 KDESGAAAIEYGMLVAL 26 (60)
Q Consensus 10 ~De~GaTAIEYgLIaal 26 (60)
--++|+|.+||+-.---
T Consensus 31 vA~sGATLvEfaTpdEt 47 (83)
T 3i6v_A 31 IAESGATLVEFATPEET 47 (83)
T ss_dssp HHHSSSEEEEESSHHHH
T ss_pred HHCCCCEEEEECCHHHH
T ss_conf 63578458996988999
No 7
>>2gpj_A Siderophore-interacting protein; ZP_00813641.1, structural genomics, PSI, protein structure initiative; HET: FAD; 2.20A {Shewanella putrefaciens cn-32} (A:108-229)
Probab=4.52 E-value=2.5e+02 Score=11.88 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=10.5
Q ss_pred CHHHHHHHHHCCCCCC
Q ss_conf 9799999950346823
Q gi|254780736|r 1 MINCMNKLLKDESGAA 16 (60)
Q Consensus 1 M~~~~~~f~~De~GaT 16 (60)
|.+.+|+++++|.|..
T Consensus 95 ~vk~lR~~l~~~~g~~ 110 (122)
T 2gpj_A 95 SXRALRRHFKQAHALP 110 (122)
T ss_dssp HHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999853999
No 8
>>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (D:)
Probab=4.40 E-value=2.9e+02 Score=11.60 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 399999999999999999
Q gi|254780736|r 16 AAIEYGMLVALIAVAIIA 33 (60)
Q Consensus 16 TAIEYgLIaalIav~ii~ 33 (60)
|-.-+..|+-||.++++.
T Consensus 25 t~~~i~ii~~liflAif~ 42 (43)
T 1qle_D 25 TWVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999963
No 9
>>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} (A:)
Probab=4.18 E-value=3e+02 Score=11.49 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999985589999999985314
Q gi|254780736|r 31 IIAAVTMLGGSLKGTFEEAANRIS 54 (60)
Q Consensus 31 ii~av~~lG~~l~~~f~~i~~~l~ 54 (60)
+-..|..+=.++.+.|+.+++++-
T Consensus 7 Lt~~Vq~LLqQmQ~kFq~mSd~Ii 30 (48)
T 3ci9_A 7 LTSVVQTLLQQMQDKFQTISDQII 30 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998899999
No 10
>>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} (A:1-14,A:51-148)
Probab=4.02 E-value=3.1e+02 Score=11.42 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=13.4
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 3468239999999999999
Q gi|254780736|r 11 DESGAAAIEYGMLVALIAV 29 (60)
Q Consensus 11 De~GaTAIEYgLIaalIav 29 (60)
..+=-|||+||+=-+|.--
T Consensus 87 g~rLHtAirYGvSQAlLdA 105 (112)
T 1kko_A 87 GNLLHTAVRYGLSQALLDA 105 (112)
T ss_dssp TEECCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 9406789999999999999
Done!