RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62] (60 letters) >gnl|CDD|113726 pfam04964, Flp_Fap, Flp/Fap pilin component. Length = 47 Score = 49.9 bits (120), Expect = 1e-07 Identities = 27/47 (57%), Positives = 32/47 (68%) Query: 8 LLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRIS 54 LKDESGA AIEYG++ ALIAV IIA VT LG +LK F ++ Sbjct: 1 FLKDESGATAIEYGLIAALIAVVIIAYVTTLGTALKTKFTSIGTALT 47 >gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]. Length = 58 Score = 47.5 bits (113), Expect = 7e-07 Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 1 MINCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISN 55 M + + L+DE GA AIEYG++ ALIAV IIA + LG +LKG F ++ Sbjct: 1 MKKLLRRFLRDEDGATAIEYGLIAALIAVVIIAGGSTLGTALKGAFTAIGAALTG 55 >gnl|CDD|34568 COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]. Length = 185 Score = 25.1 bits (54), Expect = 4.1 Identities = 7/32 (21%), Positives = 17/32 (53%) Query: 4 CMNKLLKDESGAAAIEYGMLVALIAVAIIAAV 35 + + +D GAAA+E+ ++ + + + V Sbjct: 11 LLRRFRRDRRGAAAVEFALVAPPLLLLVFGIV 42 >gnl|CDD|144408 pfam00798, Arena_glycoprot, Arenavirus glycoprotein. Length = 473 Score = 23.8 bits (52), Expect = 9.5 Identities = 8/18 (44%), Positives = 14/18 (77%) Query: 18 IEYGMLVALIAVAIIAAV 35 I+ + +ALIAV++IA + Sbjct: 15 IQEALNIALIAVSLIAII 32 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.317 0.130 0.336 Gapped Lambda K H 0.267 0.0779 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 579,381 Number of extensions: 21181 Number of successful extensions: 129 Number of sequences better than 10.0: 1 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 14 Length of query: 60 Length of database: 6,263,737 Length adjustment: 32 Effective length of query: 28 Effective length of database: 5,572,249 Effective search space: 156022972 Effective search space used: 156022972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (23.3 bits)