RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780736|ref|YP_003065149.1| hypothetical protein
CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)



>gnl|CDD|113726 pfam04964, Flp_Fap, Flp/Fap pilin component. 
          Length = 47

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 27/47 (57%), Positives = 32/47 (68%)

Query: 8  LLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRIS 54
           LKDESGA AIEYG++ ALIAV IIA VT LG +LK  F      ++
Sbjct: 1  FLKDESGATAIEYGLIAALIAVVIIAYVTTLGTALKTKFTSIGTALT 47


>gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp
          [Intracellular trafficking and secretion].
          Length = 58

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 1  MINCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISN 55
          M   + + L+DE GA AIEYG++ ALIAV IIA  + LG +LKG F      ++ 
Sbjct: 1  MKKLLRRFLRDEDGATAIEYGLIAALIAVVIIAGGSTLGTALKGAFTAIGAALTG 55


>gnl|CDD|34568 COG4961, TadG, Flp pilus assembly protein TadG [Intracellular
          trafficking and secretion].
          Length = 185

 Score = 25.1 bits (54), Expect = 4.1
 Identities = 7/32 (21%), Positives = 17/32 (53%)

Query: 4  CMNKLLKDESGAAAIEYGMLVALIAVAIIAAV 35
           + +  +D  GAAA+E+ ++   + + +   V
Sbjct: 11 LLRRFRRDRRGAAAVEFALVAPPLLLLVFGIV 42


>gnl|CDD|144408 pfam00798, Arena_glycoprot, Arenavirus glycoprotein. 
          Length = 473

 Score = 23.8 bits (52), Expect = 9.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 18 IEYGMLVALIAVAIIAAV 35
          I+  + +ALIAV++IA +
Sbjct: 15 IQEALNIALIAVSLIAII 32


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.130    0.336 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 579,381
Number of extensions: 21181
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 14
Length of query: 60
Length of database: 6,263,737
Length adjustment: 32
Effective length of query: 28
Effective length of database: 5,572,249
Effective search space: 156022972
Effective search space used: 156022972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)