RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780736|ref|YP_003065149.1| hypothetical protein
CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)



>gnl|CDD|183848 PRK13024, PRK13024, bifunctional preprotein translocase subunit
           SecD/SecF; Reviewed.
          Length = 755

 Score = 25.2 bits (56), Expect = 3.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 14  GAAAIEYGMLVALIAVAIIA 33
           G  AI+ G++  +I  A+I 
Sbjct: 261 GQDAIDAGIIAGIIGFALIF 280


>gnl|CDD|131015 TIGR01960, ndhF3_CO2, NAD(P)H dehydrogenase, subunit NdhF3 family. 
           This family represents a subfamily of NAD(P)H
           dehydrogenase subunit 5, or ndhF. It is restricted to
           two paralogs in each completed cyanobacterial genome, in
           which several subtypes of ndhF are found. Included in
           this family is NdhF3, shown to play a role in
           high-affinity CO2 uptake in Synechococcus sp. PCC7002.
           In all cases, neighboring genes include a paralog of
           ndhD but do include other NAD(P)H dehydrogenase
           subunits. Instead, genes related to C02 uptake tend to
           be found nearby.
          Length = 606

 Score = 24.7 bits (54), Expect = 6.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 24  VALIAVAIIAAVTMLGGSL 42
           VAL A+  I +VT +GGSL
Sbjct: 282 VALTALIAIGSVTAIGGSL 300


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.130    0.336 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 885,364
Number of extensions: 41766
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 23
Length of query: 60
Length of database: 5,994,473
Length adjustment: 32
Effective length of query: 28
Effective length of database: 5,303,017
Effective search space: 148484476
Effective search space used: 148484476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)