Query gi|254780737|ref|YP_003065150.1| hypothetical protein CLIBASIA_03120 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 60
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 30 13:58:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780737.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ohe_A CDC14B, CDC14B2 phospha 18.1 36 0.0015 15.8 1.2 31 26-56 67-97 (348)
2 1igq_A Transcriptional repress 6.7 1E+02 0.0043 13.7 0.4 19 29-47 2-20 (62)
3 2ory_A Lipase; alpha/beta hydr 6.3 81 0.0034 14.1 -0.2 23 4-30 6-28 (346)
4 1x4p_A Putative splicing facto 5.1 2E+02 0.0083 12.3 1.2 16 17-32 48-63 (66)
5 2i9f_A Nucleocapsid; structure 4.5 1.5E+02 0.0062 12.9 0.1 10 10-19 30-39 (69)
6 1wff_A Riken cDNA 2810002D23 p 4.1 1.1E+02 0.0047 13.5 -0.8 16 19-34 65-80 (85)
7 2w9y_A CE-FAR-7, fatty acid/re 3.7 2.5E+02 0.011 11.8 0.8 11 24-34 128-138 (140)
8 3f0i_A Arsenate reductase; str 3.4 2.8E+02 0.012 11.6 1.5 24 21-44 78-104 (119)
9 3fz4_A Putative arsenate reduc 3.1 3E+02 0.013 11.5 2.3 27 15-41 72-101 (120)
10 1hj0_A Thymosin BETA9; actin b 2.9 2.6E+02 0.011 11.8 0.2 12 41-52 17-28 (41)
No 1
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A
Probab=18.05 E-value=36 Score=15.82 Aligned_cols=31 Identities=32% Similarity=0.269 Sum_probs=24.0
Q ss_pred HHHHCCCCCHHCCEEEEHHHHHHHHHHHHHH
Q ss_conf 6531286500065500005555566688776
Q gi|254780737|r 26 EIKKNNPTLEKKPIVLMKHEIQEKKTLAAFT 56 (60)
Q Consensus 26 eikknnptlekkpivlmkheiqekktlaaft 56 (60)
.-+-++|...+|+||.--..-+++++-|||-
T Consensus 67 ~~~L~~~~~~~k~iv~yt~~~~~~r~Naa~L 97 (348)
T 1ohe_A 67 NKKLKSITMLRKKIVHFTGSDQRKQANAAFL 97 (348)
T ss_dssp HHHHHCGGGTTSEEEEEECSCHHHHHHHHHH
T ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 9998281004975999858982888889999
No 2
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=6.68 E-value=1e+02 Score=13.68 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=14.3
Q ss_pred HCCCCCHHCCEEEEHHHHH
Q ss_conf 1286500065500005555
Q gi|254780737|r 29 KNNPTLEKKPIVLMKHEIQ 47 (60)
Q Consensus 29 knnptlekkpivlmkheiq 47 (60)
...|+--|||||...|.-+
T Consensus 2 e~Dpdklkk~iv~V~~dgr 20 (62)
T 1igq_A 2 EPDPDKLKKAIVQVEHDER 20 (62)
T ss_dssp -------CCCEEEEEETTE
T ss_pred CCCHHHHHCCEEEEEECCH
T ss_conf 8880034376899998884
No 3
>2ory_A Lipase; alpha/beta hydrolase; 2.20A {Photobacterium SP}
Probab=6.35 E-value=81 Score=14.14 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHC
Q ss_conf 445478999988655431147665312
Q gi|254780737|r 4 TQIALALSFFMITHSYYAFSQDEIKKN 30 (60)
Q Consensus 4 tqialalsffmithsyyafsqdeikkn 30 (60)
-||-|+||+. |||.|++-...+-
T Consensus 6 ~~~~l~~s~l----~y~~~~~~~~~~~ 28 (346)
T 2ory_A 6 EQLMLAFSYM----SYYGITHTGSAKK 28 (346)
T ss_dssp HHHHHHHHHH----TTTTTTCC----C
T ss_pred HHHHHHHHHH----HHCCCCCCCCCCH
T ss_conf 9999999999----8667776688520
No 4
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=5.12 E-value=2e+02 Score=12.30 Aligned_cols=16 Identities=25% Similarity=0.677 Sum_probs=6.8
Q ss_pred HHHHHHCHHHHHHCCC
Q ss_conf 5543114766531286
Q gi|254780737|r 17 HSYYAFSQDEIKKNNP 32 (60)
Q Consensus 17 hsyyafsqdeikknnp 32 (60)
|.||..--.|+++.+|
T Consensus 48 ~~YYr~kl~e~k~~~~ 63 (66)
T 1x4p_A 48 YKYYKLKLAEMQRSGP 63 (66)
T ss_dssp HHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 5999999999997176
No 5
>2i9f_A Nucleocapsid; structure, crystallography, assembly, viral protein; 2.00A {Equine arteritis virus} SCOP: d.254.1.1
Probab=4.51 E-value=1.5e+02 Score=12.92 Aligned_cols=10 Identities=50% Similarity=0.796 Sum_probs=7.4
Q ss_pred HHHHHHHHHH
Q ss_conf 9999886554
Q gi|254780737|r 10 LSFFMITHSY 19 (60)
Q Consensus 10 lsffmithsy 19 (60)
-.||||.|.-
T Consensus 30 qrffmighgs 39 (69)
T 2i9f_A 30 QRFFMIGHGS 39 (69)
T ss_dssp HHHHHTTCSE
T ss_pred HEEEEECCCC
T ss_conf 1025762552
No 6
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=4.07 E-value=1.1e+02 Score=13.49 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=11.5
Q ss_pred HHHHCHHHHHHCCCCC
Q ss_conf 4311476653128650
Q gi|254780737|r 19 YYAFSQDEIKKNNPTL 34 (60)
Q Consensus 19 yyafsqdeikknnptl 34 (60)
|-....++|.++||.+
T Consensus 65 yK~~~k~~L~k~NP~i 80 (85)
T 1wff_A 65 YKSAGRRYLEEANPVS 80 (85)
T ss_dssp CSSSCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 4888899999978875
No 7
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=3.67 E-value=2.5e+02 Score=11.81 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=5.4
Q ss_pred HHHHHHCCCCC
Q ss_conf 76653128650
Q gi|254780737|r 24 QDEIKKNNPTL 34 (60)
Q Consensus 24 qdeikknnptl 34 (60)
|++++++.|.+
T Consensus 128 K~eLkk~FP~I 138 (140)
T 2w9y_A 128 QAALRKNNPDI 138 (140)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHHCCCC
T ss_conf 99999868777
No 8
>3f0i_A Arsenate reductase; structural genomics, IDP01300, center for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=3.39 E-value=2.8e+02 Score=11.58 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHCHHHHHH---CCCCCHHCCEEEEHH
Q ss_conf 114766531---286500065500005
Q gi|254780737|r 21 AFSQDEIKK---NNPTLEKKPIVLMKH 44 (60)
Q Consensus 21 afsqdeikk---nnptlekkpivlmkh 44 (60)
..|.+++.. .||.|-|.||+.-..
T Consensus 78 ~~s~~~~i~ll~~~P~LikRPIi~~~~ 104 (119)
T 3f0i_A 78 QLSDDALFAAMAEHPKLIERPIVVCNG 104 (119)
T ss_dssp TCCHHHHHHHHHHCGGGBCSCEEEETT
T ss_pred CCCHHHHHHHHHHCHHHCCCCEEEECC
T ss_conf 599999999999683340297899799
No 9
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159}
Probab=3.15 E-value=3e+02 Score=11.46 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHHCHHHHHH---CCCCCHHCCEEE
Q ss_conf 865543114766531---286500065500
Q gi|254780737|r 15 ITHSYYAFSQDEIKK---NNPTLEKKPIVL 41 (60)
Q Consensus 15 ithsyyafsqdeikk---nnptlekkpivl 41 (60)
+.....+.|.+++.. .||.|-|.||+.
T Consensus 72 l~~~~~~ls~~e~i~ll~~~P~LikRPIl~ 101 (120)
T 3fz4_A 72 LKDKLHQLSLDEAANLLASDGMLIKRPLLV 101 (120)
T ss_dssp HHHHGGGCCHHHHHHHHHHCGGGBCSCEEE
T ss_pred HHHCCCCCCHHHHHHHHHHCHHHEECCEEE
T ss_conf 010120059999999999590432476799
No 10
>1hj0_A Thymosin BETA9; actin binding peptide, T-cell differentiation, immunopotentiation, thymus, actin; NMR {Bos taurus} SCOP: j.86.1.1
Probab=2.88 E-value=2.6e+02 Score=11.76 Aligned_cols=12 Identities=67% Similarity=0.703 Sum_probs=0.0
Q ss_pred EEHHHHHHHHHH
Q ss_conf 000555556668
Q gi|254780737|r 41 LMKHEIQEKKTL 52 (60)
Q Consensus 41 lmkheiqekktl 52 (60)
|-|.|.|||.+|
T Consensus 17 LKktetqEKN~L 28 (41)
T 1hj0_A 17 LKKTETQEKNTL 28 (41)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHCCCCCC
T ss_conf 011120336889
Done!