RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780737|ref|YP_003065150.1| hypothetical protein
CLIBASIA_03120 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)



>gnl|CDD|183415 PRK12297, obgE, GTPase CgtA; Reviewed.
          Length = 424

 Score = 24.3 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 24  QDEIKKNNPTLEKKP--IVLMKHEIQE-KKTLAAF 55
             E+K  NP L ++P  +V  K ++ E ++ L  F
Sbjct: 262 NKELKLYNPRLLERPQIVVANKMDLPEAEENLEEF 296


>gnl|CDD|162734 TIGR02152, D_ribokin_bact, ribokinase.  This model describes
           ribokinase, an enzyme catalyzing the first step in
           ribose catabolism. The rbsK gene encoding ribokinase
           typically is found with ribose transport genes.
           Ribokinase belongs to the carbohydrate kinase pfkB
           family (pfam00294). In the wide gulf between the current
           trusted (360 bit) and noise (100 bit) cutoffs are a
           number of sequences, few of which are clustered with
           predicted ribose transport genes but many of which are
           currently annotated as if having ribokinase activity.
           Most likely some have this function and others do not.
          Length = 293

 Score = 24.1 bits (53), Expect = 8.9
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 22  FSQDEIKKNNPTLEKKPIVLMKHEIQEKKTLAAFT 56
            + ++I      + +  IVL++ EI  +  L A  
Sbjct: 110 LTPEDIDAAEALIAESDIVLLQLEIPLETVLEAAK 144


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0740    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 930,780
Number of extensions: 41548
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 11
Length of query: 60
Length of database: 5,994,473
Length adjustment: 32
Effective length of query: 28
Effective length of database: 5,303,017
Effective search space: 148484476
Effective search space used: 148484476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.0 bits)