HHsearch alignment for GI: 254780739 and conserved domain: pfam03966
>pfam03966 Trm112p Trm112p-like protein. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices.
Probab=99.27 E-value=9.1e-13 Score=89.08 Aligned_cols=40 Identities=55% Similarity=0.836 Sum_probs=37.4
Q ss_pred CHHHHHHHCCCCCCCEE-------EEECCCCEEECHHCCCCCCCCCC
Q ss_conf 86889651167898736-------89567885775210812401176
Q gi|254780739|r 9 DPQLLEILVCPLTKGNL-------TLISEGTELLSKKASLAYPIRSG 48 (64)
Q Consensus 9 ~~~LL~iL~CP~~k~~L-------~~~~~~~~Lvc~~~~~~YPI~dg 48 (64)
T Consensus 1 ~~~ll~iL~CP~~kgpL~l~~~~~~~~~~egeLvC~~~~~~yPI~dG 47 (47)
T pfam03966 1 DLLLLEILACPLCKGPLALVEVAGHYDIEEGELVCPECGLAYPIRDG 47 (47)
T ss_pred CCCHHEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 90321077555757834224443444611277862355602404689