HHsearch alignment for GI: 254780739 and conserved domain: pfam08271
>pfam08271 TF_Zn_Ribbon TFIIB zinc-binding. The transcription factor TFIIB contains a zinc-binding motif near the N-terminus. This domain is involved in the interaction with RNA pol II and TFIIF and plays a crucial role in selecting the transcription initiation site. The domain adopts a zinc ribbon like structure.
Probab=91.39 E-value=0.14 Score=29.93 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.1
Q ss_pred HCCCCCCCE-EEEECCCCEEECHHCCCC
Q ss_conf 116789873-689567885775210812
Q gi|254780739|r 16 LVCPLTKGN-LTLISEGTELLSKKASLA 42 (64)
Q Consensus 16 L~CP~~k~~-L~~~~~~~~Lvc~~~~~~ 42 (64)
T Consensus 1 ~~Cp~Cg~~~~~~D~~~Ge~vC~~CG~V 28 (40)
T pfam08271 1 MKCPNCGSTEIVFDYERGEYVCTECGLV 28 (40)
T ss_pred CCCCCCCCCCEEEECCCCCEECCCCCEE
T ss_conf 9388799970677277897870579719