HHsearch alignment of GI: 254780739 and MMDB domain: 3k1f_M_1-57

>3k1f_M (M:1-57) Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}

Probab=95.09  E-value=0.012  Score=35.17  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             CCHHHHHHHCCCCCCC---EEEEECCCCEEECHHCCCC
Q ss_conf             2868896511678987---3689567885775210812
Q gi|254780739|r    8 IDPQLLEILVCPLTKG---NLTLISEGTELLSKKASLA   42 (64)
Q Consensus         8 ~~~~LL~iL~CP~~k~---~L~~~~~~~~Lvc~~~~~~   42 (64)
                      ..+.+-+.++||.|++   .|..|.+.+++||..|++.
T Consensus        14 ~~~~~~~~~~CPeC~s~~~~lv~D~~~Ge~VC~~CGlV   51 (57)
T 3k1f_M           14 RGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLV   51 (57)
T ss_dssp             CSSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred             CCCCCEEEEECCCCCCCCCEEEEECCCCCEECCCCCEE
T ss_conf             79998644689899998988988798896797358919