HHSEARCH alignment of GI: 254780739 and SCOP domain: d1pfta_

Alignment

Probab=90.42  E-value=0.084  Score=28.62  Aligned_cols=27  Identities=26%  Similarity=0.431  Sum_probs=23.6

Q ss_pred             HCCCCCCC-EEEEECCCCEEECHHCCCC
Q ss_conf             11678987-3689567885775210812
Q gi|254780739|r   16 LVCPLTKG-NLTLISEGTELLSKKASLA   42 (64)
Q Consensus        16 L~CP~~k~-~L~~~~~~~~Lvc~~~~~~   42 (64)
                      ..||.|++ .+..|.+.++++|..|++.
T Consensus         6 ~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~V   33 (50)
T d1pfta_           6 KVCPACESAELIYDPERGEIVCAKCGYV   33 (50)
T ss_dssp             CSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred             CCCCCCCCCCEEEECCCCEEECCCCCCE
T ss_conf             3484887983788878790850049869

SCOP domain information

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]