Query gi|254780739|ref|YP_003065152.1| hypothetical protein CLIBASIA_03130 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 64 No_of_seqs 110 out of 655 Neff 4.7 Searched_HMMs 13730 Date Wed Jun 1 08:20:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780739.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2jnya1 b.171.1.1 (A:1-59) Unc 99.9 3.2E-24 2.3E-28 147.3 2.8 59 6-64 1-59 (59) 2 d2hf1a1 b.171.1.1 (A:2-60) Hyp 99.9 2.5E-23 1.8E-27 142.6 1.3 55 9-63 1-55 (59) 3 d2pk7a1 b.171.1.1 (A:3-61) Unc 99.9 5.6E-23 4.1E-27 140.7 2.5 53 11-63 2-54 (59) 4 d1p91a_ c.66.1.33 (A:) rRNA me 95.4 0.0053 3.8E-07 35.0 3.1 40 16-57 2-41 (268) 5 d1dl6a_ g.41.3.1 (A:) Transcri 91.9 0.034 2.4E-06 30.7 2.0 31 12-42 8-39 (58) 6 d1pfta_ g.41.3.1 (A:) Transcri 90.4 0.084 6.1E-06 28.6 2.8 27 16-42 6-33 (50) 7 d2akla2 g.41.3.5 (A:3-40) Hypo 86.4 0.15 1.1E-05 27.3 1.9 31 16-47 4-34 (38) 8 d2jnea1 g.41.18.1 (A:1-71) Hyp 73.4 1.1 8.2E-05 22.7 2.8 29 16-46 3-31 (71) 9 d2ct7a1 g.44.1.4 (A:8-80) Ring 71.5 0.92 6.7E-05 23.1 1.9 32 15-46 18-49 (73) 10 d1g8kb_ b.33.1.1 (B:) Arsenite 48.7 9.2 0.00067 17.8 3.7 37 17-53 59-96 (133) 11 d1dgsa1 a.60.2.2 (A:401-581) N 45.2 4.8 0.00035 19.3 1.9 20 17-38 5-24 (181) 12 d2f9yb1 c.14.1.4 (B:23-285) Ac 44.7 1.1 7.9E-05 22.7 -1.5 28 17-44 4-32 (263) 13 d2k4xa1 g.41.8.8 (A:1-55) Ribo 43.6 4.2 0.00031 19.6 1.3 31 17-47 20-50 (55) 14 d1l1oc_ b.40.4.3 (C:) Replicat 41.0 7.4 0.00054 18.3 2.3 29 15-44 40-70 (178) 15 d1rfsa_ b.33.1.1 (A:) ISP subu 38.6 12 0.00084 17.3 3.0 38 16-54 53-90 (127) 16 d2dkta1 g.89.1.1 (A:8-81) RING 32.0 1.2 8.5E-05 22.6 -3.0 34 15-48 29-66 (74) 17 d1fqta_ b.33.1.1 (A:) Rieske-t 31.0 7.3 0.00053 18.3 0.9 37 16-52 41-79 (109) 18 d2e74d1 b.33.1.1 (D:46-179) IS 30.2 10 0.00073 17.6 1.5 35 17-52 62-96 (134) 19 d1neea2 g.59.1.1 (A:99-135) Zi 30.1 17 0.0012 16.4 2.7 32 16-47 2-36 (37) 20 d1jova_ b.30.5.7 (A:) Hypothet 29.2 5.6 0.00041 18.9 0.1 16 40-55 64-79 (269) 21 d1vm9a_ b.33.1.1 (A:) Toluene- 29.1 8.1 0.00059 18.1 0.9 36 16-51 42-78 (109) 22 d3c0da1 b.33.1.3 (A:4-111) NAD 28.5 14 0.001 16.9 2.0 36 17-52 43-84 (108) 23 d2jzaa1 b.33.1.3 (A:1-122) NAD 28.3 14 0.00099 16.9 1.9 36 17-52 45-86 (122) 24 d1weoa_ g.44.1.1 (A:) Cellulos 28.1 1.7 0.00012 21.7 -2.8 45 19-63 44-88 (93) 25 d1weva_ g.50.1.2 (A:) PHD fing 27.3 11 0.00078 17.5 1.2 32 15-47 16-47 (88) 26 d2jo6a1 b.33.1.3 (A:1-108) NAD 26.9 17 0.0012 16.4 2.2 37 17-53 45-87 (108) 27 d1k81a_ g.59.1.1 (A:) Zinc-bin 26.4 17 0.0012 16.4 2.1 31 17-47 2-35 (36) 28 d1rmda2 g.44.1.1 (A:1-86) V(D) 25.1 20 0.0015 16.0 2.3 20 7-26 15-34 (86) 29 d2fiya1 e.59.1.1 (A:19-308) Fd 23.2 21 0.0016 15.9 2.2 29 17-45 166-202 (290) 30 d1lv3a_ g.39.1.9 (A:) Hypothet 22.2 15 0.0011 16.6 1.3 25 16-40 7-33 (65) 31 d1odha_ d.239.1.1 (A:) Mgcm1 { 21.6 23 0.0017 15.7 2.0 13 17-29 99-111 (158) 32 d1jm7b_ g.44.1.1 (B:) bard1 RI 21.0 18 0.0013 16.3 1.4 17 10-26 17-33 (97) No 1 >d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]} Probab=99.88 E-value=3.2e-24 Score=147.32 Aligned_cols=59 Identities=37% Similarity=0.747 Sum_probs=56.9 Q ss_pred HHCCHHHHHHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECCCCC Q ss_conf 00286889651167898736895678857752108124011763405877713044589 Q gi|254780739|r 6 FNIDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQG 64 (64) Q Consensus 6 ~~~~~~LL~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~~~~ 64 (64) |+||++||+||+||.||++|+|++++++|+|++|+++|||+|||||||+||||+++.+. T Consensus 1 M~~~~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deA~~l~~~~ 59 (59) T d2jnya1 1 MSLDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEATEWTPNN 59 (59) T ss_dssp CCSCGGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSSCCEECCCCC T ss_pred CCCCHHHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCC T ss_conf 99797999871587999870796889989748648545252995021899930177899 No 2 >d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]} Probab=99.85 E-value=2.5e-23 Score=142.57 Aligned_cols=55 Identities=49% Similarity=0.861 Sum_probs=52.9 Q ss_pred CHHHHHHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECCCC Q ss_conf 8688965116789873689567885775210812401176340587771304458 Q gi|254780739|r 9 DPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63 (64) Q Consensus 9 ~~~LL~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~~~ 63 (64) |++||+|||||+|||+|+|++++++|+|++|+++|||+|||||||+++||+++++ T Consensus 1 D~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~l~YPI~dGIPvlL~~eAr~l~~~ 55 (59) T d2hf1a1 1 DAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPE 55 (59) T ss_dssp CCCCEEECBCTTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGGGCEECCHH T ss_pred CHHHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCHH T ss_conf 9667664358798986369588998963876844544189231289994318654 No 3 >d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]} Probab=99.85 E-value=5.6e-23 Score=140.74 Aligned_cols=53 Identities=57% Similarity=0.967 Sum_probs=51.3 Q ss_pred HHHHHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECCCC Q ss_conf 88965116789873689567885775210812401176340587771304458 Q gi|254780739|r 11 QLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63 (64) Q Consensus 11 ~LL~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~~~ 63 (64) +||+|||||+|||+|+|++++++|+|++|+++|||+|||||||++|||+++++ T Consensus 2 kLL~iL~CP~ck~~L~~~~~~~~Lvc~~~~laYPI~dGIPvlL~~eAr~l~~~ 54 (59) T d2pk7a1 2 KLLDILACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVMLESEARTLTTE 54 (59) T ss_dssp CGGGTCCCTTTCCCCEECTTSSEEEETTTTEEEEEETTEECCCGGGCEECCHH T ss_pred CHHHHEECCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCHH T ss_conf 34761478798986569488998964875855424089010589995207745 No 4 >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Probab=95.36 E-value=0.0053 Score=34.98 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=29.7 Q ss_pred HCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHH Q ss_conf 116789873689567885775210812401176340587771 Q gi|254780739|r 16 LVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEA 57 (64) Q Consensus 16 L~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deA 57 (64) ++||+|+++|.... +.|+|..|+.....++|+-.+++... T Consensus 2 f~CP~C~~~L~~~~--~~l~C~~~h~fd~~~~Gy~~ll~~~~ 41 (268) T d1p91a_ 2 FSCPLCHQPLSREK--NSYICPQRHQFDMAKEGYVNLLPVQH 41 (268) T ss_dssp BBCTTTCCBCEEET--TEEECTTCCEEEBCTTSCEECSCSSS T ss_pred CCCCCCCHHHHCCC--CEEECCCCCCCCCCCCCEEECCCCCC T ss_conf 64989981220579--86988999850656684576365654 No 5 >d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=91.92 E-value=0.034 Score=30.73 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.2 Q ss_pred HHHHHCCCCCCCE-EEEECCCCEEECHHCCCC Q ss_conf 8965116789873-689567885775210812 Q gi|254780739|r 12 LLEILVCPLTKGN-LTLISEGTELLSKKASLA 42 (64) Q Consensus 12 LL~iL~CP~~k~~-L~~~~~~~~Lvc~~~~~~ 42 (64) +++-+.||.|++. +.+|...++++|..|++. T Consensus 8 ~~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~V 39 (58) T d1dl6a_ 8 ALPRVTCPNHPDAILVEDYRAGDMICPECGLV 39 (58) T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECTTTCCE T ss_pred CCCCCCCCCCCCCCEEEECCCCCEECCCCCCE T ss_conf 55666897997987778878882850359989 No 6 >d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=90.42 E-value=0.084 Score=28.62 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.6 Q ss_pred HCCCCCCC-EEEEECCCCEEECHHCCCC Q ss_conf 11678987-3689567885775210812 Q gi|254780739|r 16 LVCPLTKG-NLTLISEGTELLSKKASLA 42 (64) Q Consensus 16 L~CP~~k~-~L~~~~~~~~Lvc~~~~~~ 42 (64) ..||.|++ .+..|.+.++++|..|++. T Consensus 6 ~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~V 33 (50) T d1pfta_ 6 KVCPACESAELIYDPERGEIVCAKCGYV 33 (50) T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCB T ss_pred CCCCCCCCCCEEEECCCCEEECCCCCCE T ss_conf 3484887983788878790850049869 No 7 >d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Probab=86.40 E-value=0.15 Score=27.26 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=24.8 Q ss_pred HCCCCCCCEEEEECCCCEEECHHCCCCCCCCC Q ss_conf 11678987368956788577521081240117 Q gi|254780739|r 16 LVCPLTKGNLTLISEGTELLSKKASLAYPIRS 47 (64) Q Consensus 16 L~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~d 47 (64) =.||.|.+...|... .-|||+.|+..++-.+ T Consensus 4 P~CP~C~seytYedg-~l~vCPeC~hEW~~~~ 34 (38) T d2akla2 4 PPCPQCNSEYTYEDG-ALLVCPECAHEWSPNE 34 (38) T ss_dssp CCCTTTCCCCCEECS-SSEEETTTTEEECTTT T ss_pred CCCCCCCCCCEECCC-CEEECCCCCCCCCCCC T ss_conf 868878980357379-9978975557478543 No 8 >d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} Probab=73.44 E-value=1.1 Score=22.65 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=20.2 Q ss_pred HCCCCCCCEEEEECCCCEEECHHCCCCCCCC Q ss_conf 1167898736895678857752108124011 Q gi|254780739|r 16 LVCPLTKGNLTLISEGTELLSKKASLAYPIR 46 (64) Q Consensus 16 L~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~ 46 (64) +-||.|+++|++.. +.-.|..|...|-+. T Consensus 3 ~~CP~C~~eL~~~~--~~~~C~~C~~~~~~~ 31 (71) T d2jnea1 3 LHCPQCQHVLDQDN--GHARCRSCGEFIEMK 31 (71) T ss_dssp CBCSSSCSBEEEET--TEEEETTTCCEEEEE T ss_pred CCCCCCCCCCCCCC--CCEEHHHHHHHHEEE T ss_conf 86887557310258--977614640102367 No 9 >d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Probab=71.54 E-value=0.92 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=26.6 Q ss_pred HHCCCCCCCEEEEECCCCEEECHHCCCCCCCC Q ss_conf 51167898736895678857752108124011 Q gi|254780739|r 15 ILVCPLTKGNLTLISEGTELLSKKASLAYPIR 46 (64) Q Consensus 15 iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~ 46 (64) +--||.|+..+..+.+.+.++|+.|+..|=.. T Consensus 18 ~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~ 49 (73) T d2ct7a1 18 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVR 49 (73) T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSS T ss_pred CCCCCCCCCEEEECCCCCEEECCCCCCEECCC T ss_conf 88999999976877999987869989917706 No 10 >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Probab=48.66 E-value=9.2 Score=17.82 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=31.1 Q ss_pred CCCCCCCEEEEECCCCEEECHHCCCCCCC-CCCEEECC Q ss_conf 16789873689567885775210812401-17634058 Q gi|254780739|r 17 VCPLTKGNLTLISEGTELLSKKASLAYPI-RSGVPIML 53 (64) Q Consensus 17 ~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI-~dgIPvLL 53 (64) +||.-+.+|.+..+.+.++|+-.+-.|-+ +.|-.+-- T Consensus 59 ~CpH~g~~l~~~~~~~~i~Cp~Hg~~Fd~~~~G~~~~g 96 (133) T d1g8kb_ 59 LCTHMGCPTSYDSSSKTFSCPCHFTEFDAEKAGQMICG 96 (133) T ss_dssp BCTTTCCBCEEETTTTEEECTTTCCEEEGGGTTEEEES T ss_pred HCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCEEECC T ss_conf 45778935335854398989978719836999229687 No 11 >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Probab=45.22 E-value=4.8 Score=19.29 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=15.3 Q ss_pred CCCCCCCEEEEECCCCEEECHH Q ss_conf 1678987368956788577521 Q gi|254780739|r 17 VCPLTKGNLTLISEGTELLSKK 38 (64) Q Consensus 17 ~CP~~k~~L~~~~~~~~Lvc~~ 38 (64) .||.|+++|..+ +..+.|.. T Consensus 5 ~CP~C~s~l~~e--~~~~~C~n 24 (181) T d1dgsa1 5 ACPECGHRLVKE--GKVHRCPN 24 (181) T ss_dssp BCTTTCCBCEEE--TTEEECCC T ss_pred CCCCCCCEEEEC--CCEEECCC T ss_conf 799998952622--84067899 No 12 >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Probab=44.71 E-value=1.1 Score=22.73 Aligned_cols=28 Identities=14% Similarity=0.011 Sum_probs=10.6 Q ss_pred CCCCCCCEEEEEC-CCCEEECHHCCCCCC Q ss_conf 1678987368956-788577521081240 Q gi|254780739|r 17 VCPLTKGNLTLIS-EGTELLSKKASLAYP 44 (64) Q Consensus 17 ~CP~~k~~L~~~~-~~~~Lvc~~~~~~YP 44 (64) .||.|+..+.-.+ +++--||+.|+..|+ T Consensus 4 ~C~~C~~~~~~~~l~~~~~vC~~C~~h~~ 32 (263) T d2f9yb1 4 KCDSCGQVLYRAELERNLEVCPKCDHHMR 32 (263) T ss_dssp CCTTTCCCEETTHHHHTTTBCTTTCCBCC T ss_pred CCCCCCCEEEHHHHHHHCCCCCCCCCCCC T ss_conf 17877650269999985889939989987 No 13 >d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]} Probab=43.59 E-value=4.2 Score=19.61 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=24.8 Q ss_pred CCCCCCCEEEEECCCCEEECHHCCCCCCCCC Q ss_conf 1678987368956788577521081240117 Q gi|254780739|r 17 VCPLTKGNLTLISEGTELLSKKASLAYPIRS 47 (64) Q Consensus 17 ~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~d 47 (64) .||.|+.-..+.+-.+.+.|-+|++.+=... T Consensus 20 ~CP~CG~GvFmA~H~dR~~CGKCgyTefkk~ 50 (55) T d2k4xa1 20 FCPRCGPGVFLAEHADRYSCGRCGYTEFKKA 50 (55) T ss_dssp CCTTTTTTCCCEECSSEEECTTTCCCEECCC T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCEEECC T ss_conf 4959999577412589766347756179025 No 14 >d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Probab=41.03 E-value=7.4 Score=18.32 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=21.7 Q ss_pred HHCCCC--CCCEEEEECCCCEEECHHCCCCCC Q ss_conf 511678--987368956788577521081240 Q gi|254780739|r 15 ILVCPL--TKGNLTLISEGTELLSKKASLAYP 44 (64) Q Consensus 15 iL~CP~--~k~~L~~~~~~~~Lvc~~~~~~YP 44 (64) --+||. |+.++. +...+.-.|.+|+..|| T Consensus 40 Y~aCp~~~C~KKv~-~~~~g~~~C~kC~~~~~ 70 (178) T d1l1oc_ 40 YQACPTQDCNKKVI-DQQNGLYRCEKCDTEFP 70 (178) T ss_dssp EEBCCSTTCCCBCE-EETTTEEEETTTTEEES T ss_pred ECCCCCCCCCCCCC-CCCCCCEECCCCCCCCC T ss_conf 84789732578441-07897288888888688 No 15 >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Probab=38.59 E-value=12 Score=17.28 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=31.8 Q ss_pred HCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCH Q ss_conf 116789873689567885775210812401176340587 Q gi|254780739|r 16 LVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLV 54 (64) Q Consensus 16 L~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~ 54 (64) -+||.-+.+|.+...++.++|+-.+-.|-. +|..+--| T Consensus 53 ~~C~H~g~~l~~~~~~~~~~Cp~Hg~~Fd~-~G~~~~~P 90 (127) T d1rfsa_ 53 AVCTHLGCVVPFNAAENKFICPCHGSQYNN-QGRVVRGP 90 (127) T ss_dssp CBCTTTCCBCCEETTTTEEECTTTCCEEET-TCCEEESS T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEECC-CCCCCCCC T ss_conf 999899989667556995783999929999-98998688 No 16 >d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=32.00 E-value=1.2 Score=22.55 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=25.0 Q ss_pred HHCCCCCCCEEEEEC----CCCEEECHHCCCCCCCCCC Q ss_conf 511678987368956----7885775210812401176 Q gi|254780739|r 15 ILVCPLTKGNLTLIS----EGTELLSKKASLAYPIRSG 48 (64) Q Consensus 15 iL~CP~~k~~L~~~~----~~~~Lvc~~~~~~YPI~dg 48 (64) +..||.|..+|.+.. +.+.|+|-.|+..+|+.+- T Consensus 29 ~~~C~~C~~~lt~H~~~~k~~~~l~CH~Cg~~~~~~~~ 66 (74) T d2dkta1 29 LYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQT 66 (74) T ss_dssp EESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSB T ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC T ss_conf 62189888751203435246887983567974437884 No 17 >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Probab=31.04 E-value=7.3 Score=18.34 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=25.5 Q ss_pred HCCCCCCCEEEE--ECCCCEEECHHCCCCCCCCCCEEEC Q ss_conf 116789873689--5678857752108124011763405 Q gi|254780739|r 16 LVCPLTKGNLTL--ISEGTELLSKKASLAYPIRSGVPIM 52 (64) Q Consensus 16 L~CP~~k~~L~~--~~~~~~Lvc~~~~~~YPI~dgIPvL 52 (64) -.||..+++|.. ..+.+.+.|+-.+..|-+.+|=.+- T Consensus 41 ~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~tG~~~~ 79 (109) T d1fqta_ 41 DRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKS 79 (109) T ss_dssp SBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEE T ss_pred EECCCCCCCCCCCEEECCCEEECCCCCCEEECCCCCCCC T ss_conf 544424752013405148778745548799889821705 No 18 >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Probab=30.23 E-value=10 Score=17.61 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=28.8 Q ss_pred CCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEEC Q ss_conf 167898736895678857752108124011763405 Q gi|254780739|r 17 VCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIM 52 (64) Q Consensus 17 ~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvL 52 (64) +||.-+.+|.+....+.++|+-.+..|-+ +|-.+- T Consensus 62 ~C~H~G~~l~~g~~~~~~~Cp~Hg~~Fd~-~G~~~~ 96 (134) T d2e74d1 62 VCTHLGCVVPWNAAENKFKCPCHGSQYDE-TGKVIR 96 (134) T ss_dssp BCTTTCCBCCBCTTTSCEEETTTTEEECS-SSCBCS T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCEECC-CCCEEE T ss_conf 01697778633665895598999868999-999871 No 19 >d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=30.11 E-value=17 Score=16.40 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=23.1 Q ss_pred HCCCCCCCE---EEEECCCCEEECHHCCCCCCCCC Q ss_conf 116789873---68956788577521081240117 Q gi|254780739|r 16 LVCPLTKGN---LTLISEGTELLSKKASLAYPIRS 47 (64) Q Consensus 16 L~CP~~k~~---L~~~~~~~~Lvc~~~~~~YPI~d 47 (64) ..|+.|++| |.-+..-..|.|.+|+-.-||.. T Consensus 2 V~C~~C~spDT~l~ke~R~~~l~C~aCGa~r~V~~ 36 (37) T d1neea2 2 VICHECNRPDTRIIREGRISLLKCEACGAKAPLKN 36 (37) T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSCCCCSCC T ss_pred EECCCCCCCCCEEEECCCEEEEEECCCCCCCCCCC T ss_conf 19978899888989729879998526899860366 No 20 >d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Probab=29.15 E-value=5.6 Score=18.95 Aligned_cols=16 Identities=38% Similarity=0.443 Sum_probs=13.0 Q ss_pred CCCCCCCCCEEECCHH Q ss_conf 8124011763405877 Q gi|254780739|r 40 SLAYPIRSGVPIMLVS 55 (64) Q Consensus 40 ~~~YPI~dgIPvLL~d 55 (64) ...-|||.|||++.|- T Consensus 64 ~~~~~IRGGiPi~fP~ 79 (269) T d1jova_ 64 KNGNAIRGGVPICYPW 79 (269) T ss_dssp CTTSCCSBSCCEEBSS T ss_pred CCCCCCCCCCCEECCC T ss_conf 6778634886030766 No 21 >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Probab=29.12 E-value=8.1 Score=18.12 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=26.7 Q ss_pred HCCCCCCCEEEE-ECCCCEEECHHCCCCCCCCCCEEE Q ss_conf 116789873689-567885775210812401176340 Q gi|254780739|r 16 LVCPLTKGNLTL-ISEGTELLSKKASLAYPIRSGVPI 51 (64) Q Consensus 16 L~CP~~k~~L~~-~~~~~~Lvc~~~~~~YPI~dgIPv 51 (64) -+||.-+++|.. ..+++.++|+-.+-.|-+.+|--+ T Consensus 42 ~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~F~l~~G~~~ 78 (109) T d1vm9a_ 42 AMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGI 78 (109) T ss_dssp SBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBS T ss_pred EECCCCCCCCEEEECCCCEEECCCCCCEEECCCCCCC T ss_conf 6689877532257636999975367832877996697 No 22 >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Probab=28.46 E-value=14 Score=16.87 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=25.8 Q ss_pred CCCCCCCEEE-----EE-CCCCEEECHHCCCCCCCCCCEEEC Q ss_conf 1678987368-----95-678857752108124011763405 Q gi|254780739|r 17 VCPLTKGNLT-----LI-SEGTELLSKKASLAYPIRSGVPIM 52 (64) Q Consensus 17 ~CP~~k~~L~-----~~-~~~~~Lvc~~~~~~YPI~dgIPvL 52 (64) .||..+++|. .+ .++..+.|+-.+-.|-+++|-++= T Consensus 43 ~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~ 84 (108) T d3c0da1 43 WDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLE 84 (108) T ss_dssp EETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCBBSS T ss_pred CCCCCCCCCCCCCEEEECCCCEEEECCCCCCEEECCCCCCCC T ss_conf 579778612356378852896089544466088634772546 No 23 >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Probab=28.30 E-value=14 Score=16.92 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=25.0 Q ss_pred CCCCCCCEE------EEECCCCEEECHHCCCCCCCCCCEEEC Q ss_conf 167898736------895678857752108124011763405 Q gi|254780739|r 17 VCPLTKGNL------TLISEGTELLSKKASLAYPIRSGVPIM 52 (64) Q Consensus 17 ~CP~~k~~L------~~~~~~~~Lvc~~~~~~YPI~dgIPvL 52 (64) .||..+++| ....++..+.|+-.+-.|-+++|-.+- T Consensus 45 ~CpH~g~~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~tG~~~~ 86 (122) T d2jzaa1 45 IDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLE 86 (122) T ss_dssp CCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTCCBSS T ss_pred CCCCCCCCCCCCCEEEECCCCCEEECCCCCCEEECCCCEEEE T ss_conf 897635634323236503699889799789765513324530 No 24 >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=28.07 E-value=1.7 Score=21.74 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=32.0 Q ss_pred CCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECCCC Q ss_conf 789873689567885775210812401176340587771304458 Q gi|254780739|r 19 PLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63 (64) Q Consensus 19 P~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~~~ 63 (64) |+|+.=.+|...++.-.|++|+-+|--..|-|..--|+-..--|+ T Consensus 44 PvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gDe~e~~~d~ 88 (93) T d1weoa_ 44 PACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDIDS 88 (93) T ss_dssp CCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSCC T ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC T ss_conf 645078999985167027444872455258987778710014346 No 25 >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Probab=27.29 E-value=11 Score=17.48 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=22.0 Q ss_pred HHCCCCCCCEEEEECCCCEEECHHCCCCCCCCC Q ss_conf 511678987368956788577521081240117 Q gi|254780739|r 15 ILVCPLTKGNLTLISEGTELLSKKASLAYPIRS 47 (64) Q Consensus 15 iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~d 47 (64) -++|.+|++.-. ......+.|..|+..|=..= T Consensus 16 ~~~C~iC~~~~~-~~~~~~v~Cd~C~~~~H~~C 47 (88) T d1weva_ 16 GLACVVCRQMTV-ASGNQLVECQECHNLYHQDC 47 (88) T ss_dssp CCSCSSSCCCCC-CTTCCEEECSSSCCEEETTT T ss_pred CCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCC T ss_conf 599257899067-89996888489997456112 No 26 >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Probab=26.94 E-value=17 Score=16.43 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=27.0 Q ss_pred CCCCCCCEE------EEECCCCEEECHHCCCCCCCCCCEEECC Q ss_conf 167898736------8956788577521081240117634058 Q gi|254780739|r 17 VCPLTKGNL------TLISEGTELLSKKASLAYPIRSGVPIML 53 (64) Q Consensus 17 ~CP~~k~~L------~~~~~~~~Lvc~~~~~~YPI~dgIPvLL 53 (64) .||..+++| ....++..++|+-.+-.|-+.+|-++=- T Consensus 45 ~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~F~l~tG~~~~~ 87 (108) T d2jo6a1 45 IDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMED 87 (108) T ss_dssp SCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTTEETTT T ss_pred CCCCCCCCCCCCEEEECCCCCCEEECCCCCCEEECCCCCCCCC T ss_conf 4887897502220475042478898998886487798439878 No 27 >d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=26.39 E-value=17 Score=16.44 Aligned_cols=31 Identities=26% Similarity=0.166 Sum_probs=21.5 Q ss_pred CCCCCCCEEEEEC-C--CCEEECHHCCCCCCCCC Q ss_conf 1678987368956-7--88577521081240117 Q gi|254780739|r 17 VCPLTKGNLTLIS-E--GTELLSKKASLAYPIRS 47 (64) Q Consensus 17 ~CP~~k~~L~~~~-~--~~~Lvc~~~~~~YPI~d 47 (64) .|+.|++|=.-.. + -..|.|.+|+-.-||+. T Consensus 2 ~C~~C~spDT~l~ke~R~~~l~C~aCGa~r~V~~ 35 (36) T d1k81a_ 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIRPIRM 35 (36) T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEEEECC T ss_pred CCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCC T ss_conf 9977789988989729889998536899871435 No 28 >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=25.11 E-value=20 Score=16.00 Aligned_cols=20 Identities=10% Similarity=0.404 Sum_probs=15.9 Q ss_pred HCCHHHHHHHCCCCCCCEEE Q ss_conf 02868896511678987368 Q gi|254780739|r 7 NIDPQLLEILVCPLTKGNLT 26 (64) Q Consensus 7 ~~~~~LL~iL~CP~~k~~L~ 26 (64) .+-+++.+-+.||+|...+. T Consensus 15 d~~~d~~~~l~C~IC~~~~~ 34 (86) T d1rmda2 15 DFPAHFVKSISCQICEHILA 34 (86) T ss_dssp CCCHHHHHHTBCTTTCSBCS T ss_pred CCHHHHCCCCCCCCCCCCHH T ss_conf 12243056759956784441 No 29 >d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]} Probab=23.18 E-value=21 Score=15.86 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=14.7 Q ss_pred CCCCCCCEEEEE--C------CCCEEECHHCCCCCCC Q ss_conf 167898736895--6------7885775210812401 Q gi|254780739|r 17 VCPLTKGNLTLI--S------EGTELLSKKASLAYPI 45 (64) Q Consensus 17 ~CP~~k~~L~~~--~------~~~~Lvc~~~~~~YPI 45 (64) .||+|++.=... . ..-.|+|.-|+..|.. T Consensus 166 ~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~~ 202 (290) T d2fiya1 166 LCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY 202 (290) T ss_dssp SCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC T ss_pred CCCCCCCCCHHHEEECCCCCCCCEEEECCCCCCCCCC T ss_conf 6999998021140323677788568878999885421 No 30 >d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]} Probab=22.25 E-value=15 Score=16.64 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=16.3 Q ss_pred HCCCCCCCEEEEECCCC-E-EECHHCC Q ss_conf 11678987368956788-5-7752108 Q gi|254780739|r 16 LVCPLTKGNLTLISEGT-E-LLSKKAS 40 (64) Q Consensus 16 L~CP~~k~~L~~~~~~~-~-Lvc~~~~ 40 (64) +.||.|+.+..|..+.. . .-|.+|+ T Consensus 7 v~CP~C~k~~~w~~~~~~rPFCS~RCk 33 (65) T d1lv3a_ 7 VNCPTCGKTVVWGEISPFRPFCSKRCQ 33 (65) T ss_dssp EECTTTCCEEECSSSSSCCSSSSHHHH T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 048899983445777885872547660 No 31 >d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=21.61 E-value=23 Score=15.71 Aligned_cols=13 Identities=46% Similarity=0.861 Sum_probs=10.3 Q ss_pred CCCCCCCEEEEEC Q ss_conf 1678987368956 Q gi|254780739|r 17 VCPLTKGNLTLIS 29 (64) Q Consensus 17 ~CP~~k~~L~~~~ 29 (64) .||.|+++|+... T Consensus 99 ~CpnC~g~L~~~~ 111 (158) T d1odha_ 99 SCPNCNGPLKLIP 111 (158) T ss_dssp BCSSSCCBEEEEC T ss_pred CCCCCCCCEEEEE T ss_conf 9999987456776 No 32 >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Probab=20.97 E-value=18 Score=16.28 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.2 Q ss_pred HHHHHHHCCCCCCCEEE Q ss_conf 68896511678987368 Q gi|254780739|r 10 PQLLEILVCPLTKGNLT 26 (64) Q Consensus 10 ~~LL~iL~CP~~k~~L~ 26 (64) ..+-+.|.||+|...+. T Consensus 17 ~~l~~~l~C~IC~~~~~ 33 (97) T d1jm7b_ 17 DRLEKLLRCSRCTNILR 33 (97) T ss_dssp HHHHHTTSCSSSCSCCS T ss_pred HHHHHCCCCCCCCCHHH T ss_conf 96212289925872211 Done!