RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780739|ref|YP_003065152.1| hypothetical protein
CLIBASIA_03130 [Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)



>gnl|CDD|32663 COG2835, COG2835, Uncharacterized conserved protein [Function
          unknown].
          Length = 60

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 26/55 (47%), Positives = 36/55 (65%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDD 62
          +D +LLEIL CP+ KG L    E  EL+  +  LAYPIR G+P++L  EAR + +
Sbjct: 1  MDYRLLEILACPVCKGPLVYDEEKQELICPRCKLAYPIRDGIPVLLPDEARDLSE 55


>gnl|CDD|146547 pfam03966, Trm112p, Trm112p-like protein.  The function of this
          family is uncertain. The bacterial members are about
          60-70 amino acids in length and the eukaryotic examples
          are about 120 amino acids in length. The C terminus
          contains the strongest conservation. Trm112p is
          required for tRNA methylation in S. cerevisiae and is
          found in complexes with 2 tRNA methylases (TRM9 and
          TRM11) also with putative methyltransferase YDR140W.
          The zinc-finger protein Ynr046w is plurifunctional and
          a component of the eRF1 methyltransferase in yeast. The
          crystal structure of Ynr046w has been determined to 1.7
          A resolution. It comprises a zinc-binding domain built
          from both the N- and C-terminal sequences and an
          inserted domain, absent from bacterial and archaeal
          orthologs of the protein, composed of three
          alpha-helices.
          Length = 47

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 9  DPQLLEILVCPLTKGNLTLIS-------EGTELLSKKASLAYPIRSG 48
          D  LLEIL CPL KG L L+        E  EL+  +  LAYPIR G
Sbjct: 1  DLLLLEILACPLCKGPLALVEVAGHYDIEEGELVCPECGLAYPIRDG 47


>gnl|CDD|38421 KOG3211, KOG3211, KOG3211, Predicted endoplasmic reticulum
          membrane protein Lec35/MPDU1 involved in
          monosaccharide-P-dolichol utilization [General function
          prediction only].
          Length = 230

 Score = 24.1 bits (52), Expect = 7.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 10 PQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVP 50
          PQ+++I      +G L+++S   EL+    +L+Y   SG P
Sbjct: 48 PQIMKIRAAKSARG-LSVVSLLLELVGYTVTLSYSYTSGYP 87


>gnl|CDD|36304 KOG1088, KOG1088, KOG1088, Uncharacterized conserved protein
           [Function unknown].
          Length = 124

 Score = 24.1 bits (52), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 28  ISEGTELLSKKASLAYPIRSGVPIMLVSEA 57
           + EG EL+  +    +PI  G+P ML+SE 
Sbjct: 94  VIEG-ELVCPETGRVFPISDGIPNMLLSED 122


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.137    0.375 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 666,306
Number of extensions: 23259
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 6
Length of query: 64
Length of database: 6,263,737
Length adjustment: 36
Effective length of query: 28
Effective length of database: 5,485,813
Effective search space: 153602764
Effective search space used: 153602764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)