RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780739|ref|YP_003065152.1| hypothetical protein
CLIBASIA_03130 [Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)



>2pk7_A Uncharacterized protein; NESG, PLR1, putative
          tetraacyldisaccharide-1-P 4-kinase, Q4KFT4, structural
          genomics, PSI-2; 2.20A {Pseudomonas fluorescens pf-5}
          (A:)
          Length = 69

 Score = 79.4 bits (196), Expect = 2e-16
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 9  DPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDD 62
          D +LL+IL CP+ KG L L ++ TEL+SK A LAYPIR G+P+ L SEAR +  
Sbjct: 2  DTKLLDILACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVXLESEARTLTT 55


>2js4_A UPF0434 protein BB2007; NESG, northeast structural
          genomics consortium, beta, PSI-2, protein structure
          initiative; NMR {Bordetella bronchiseptica RB50} (A:)
          Length = 70

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 26/56 (46%), Positives = 37/56 (66%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
          ++ +LL+ILVCP+ KG L       EL+     LA+P+R GVPIML +EAR +D +
Sbjct: 1  MESRLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEARSLDAE 56


>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A
          biosynthesis, NESG, structural genomics, PSI-2; 1.90A
          {Chromobacterium violaceum atcc 12472} (A:)
          Length = 68

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 26/54 (48%), Positives = 33/54 (61%)

Query: 9  DPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDD 62
          D + LEILVCPL KG L       EL+ K   LA+PI+ G+P  L SEAR++  
Sbjct: 2  DAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPXXLESEARELAP 55


>2jr6_A UPF0434 protein NMA0874; solution, structural genomics,
          PSI, protein structure initiative, northeast structural
          genomics consortium; NMR {Neisseria meningitidis Z2491}
          (A:)
          Length = 68

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
          ++ + L+ILVCP+TKG L    +  EL S++A LAYPI+ G+P ML +EAR + ++
Sbjct: 1  MEKKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYMLENEARPLSEE 56


>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural
          genomics, PSI-2, protein structure initiative; NMR
          {Corynebacterium glutamicum} (A:)
          Length = 67

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 7  NIDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
          ++DPQLLE+L CP  KG L  +     L++++ +LAY I  G+P++L+ EA +    
Sbjct: 2  SLDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEATEWTPN 58


>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG,
          all beta, structural genomics, protein structure
          initiative; NMR {Streptomyces coelicolor} (A:)
          Length = 56

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVD 61
          ++  LLEIL CP     L           +   LAYP+R G+P++LV EAR+ +
Sbjct: 3  LEAGLLEILACPACHAPLEERDAELICTGQDCGLAYPVRDGIPVLLVDEARRPE 56


>2k5r_A Uncharacterized protein XF2673; solution structure,
          structural genomics, PSI-2, protein structure
          initiative; NMR {Xylella fastidiosa TEMECULA1} (A:)
          Length = 97

 Score = 64.3 bits (156), Expect = 5e-12
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 27/82 (32%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGT---------------------------ELLSKKAS 40
          +D +LL +L  P T+  L+L+                                L+++   
Sbjct: 1  MDRKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRK 60

Query: 41 LAYPIRSGVPIMLVSEARQVDD 62
            + I   +P++L  EA     
Sbjct: 61 QVFRIEDSIPVLLPEEAIATIQ 82


>2j6a_A Protein TRM112; translation termination, methyltransferase,
           transferase, ERF1, nuclear protein, protein methylation;
           1.7A {Saccharomyces cerevisiae} (A:)
          Length = 141

 Score = 27.5 bits (61), Expect = 0.56
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 26  TLISEGTELLSKKASLAYPIRSGVPIMLVSE 56
           T I+EG  +  +     Y I++G+P +L+  
Sbjct: 103 TSIAEGE-MKCRNCGHIYYIKNGIPNLLLPP 132


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.137    0.375 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 397,916
Number of extensions: 11473
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 8
Length of query: 64
Length of database: 4,956,049
Length adjustment: 32
Effective length of query: 32
Effective length of database: 3,874,289
Effective search space: 123977248
Effective search space used: 123977248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)