RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780739|ref|YP_003065152.1| hypothetical protein
CLIBASIA_03130 [Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)



>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthesis,
          NESG, structural genomics, PSI-2; 1.90A
          {Chromobacterium violaceum atcc 12472} SCOP: b.171.1.1
          Length = 68

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 27/56 (48%), Positives = 37/56 (66%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
          +D + LEILVCPL KG L       EL+ K   LA+PI+ G+P+ML SEAR++  +
Sbjct: 1  MDAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPE 56


>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics
          consortium, beta, PSI-2, protein structure initiative;
          NMR {Bordetella bronchiseptica RB50}
          Length = 70

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 26/56 (46%), Positives = 37/56 (66%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
          ++ +LL+ILVCP+ KG L       EL+     LA+P+R GVPIML +EAR +D +
Sbjct: 1  MESRLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEARSLDAE 56


>2pk7_A Uncharacterized protein; NESG, PLR1, putative
          tetraacyldisaccharide-1-P 4-kinase, Q4KFT4, structural
          genomics, PSI-2; 2.20A {Pseudomonas fluorescens pf-5}
          SCOP: b.171.1.1
          Length = 69

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDD 62
          +D +LL+IL CP+ KG L L ++ TEL+SK A LAYPIR G+P+ML SEAR +  
Sbjct: 1  MDTKLLDILACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVMLESEARTLTT 55


>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics,
          PSI-2, protein structure initiative; NMR
          {Corynebacterium glutamicum} SCOP: b.171.1.1
          Length = 67

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
          +DPQLLE+L CP  KG L  +     L++++ +LAY I  G+P++L+ EA +    
Sbjct: 3  LDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEATEWTPN 58


>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI,
          protein structure initiative, northeast structural
          genomics consortium; NMR {Neisseria meningitidis Z2491}
          Length = 68

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
          ++ + L+ILVCP+TKG L    +  EL S++A LAYPI+ G+P ML +EAR + ++
Sbjct: 1  MEKKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYMLENEARPLSEE 56


>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all
          beta, structural genomics, protein structure
          initiative; NMR {Streptomyces coelicolor}
          Length = 56

 Score = 76.9 bits (190), Expect = 9e-16
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVD 61
          ++  LLEIL CP     L           +   LAYP+R G+P++LV EAR+ +
Sbjct: 3  LEAGLLEILACPACHAPLEERDAELICTGQDCGLAYPVRDGIPVLLVDEARRPE 56


>2k5r_A Uncharacterized protein XF2673; solution structure, structural
          genomics, PSI-2, protein structure initiative; NMR
          {Xylella fastidiosa TEMECULA1}
          Length = 97

 Score = 64.7 bits (157), Expect = 4e-12
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 27/82 (32%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGT---------------------------ELLSKKAS 40
          +D +LL +L  P T+  L+L+                                L+++   
Sbjct: 1  MDRKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRK 60

Query: 41 LAYPIRSGVPIMLVSEARQVDD 62
            + I   +P++L  EA     
Sbjct: 61 QVFRIEDSIPVLLPEEAIATIQ 82


>2j6a_A Protein TRM112; translation termination, methyltransferase,
           transferase, ERF1, nuclear protein, protein methylation;
           1.7A {Saccharomyces cerevisiae}
          Length = 141

 Score = 26.7 bits (59), Expect = 1.3
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 26  TLISEGTELLSKKASLAYPIRSGVPIMLVSE 56
           T I+EG E+  +     Y I++G+P +L+  
Sbjct: 103 TSIAEG-EMKCRNCGHIYYIKNGIPNLLLPP 132


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.7 bits (56), Expect = 2.7
 Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 40/88 (45%)

Query: 1   MRETIFNIDPQLLE-I----------LVCPLTK------------GNLTL-ISEGTELLS 36
           +R    +I  ++++ I               T             G LT    +GT    
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT---- 523

Query: 37  KKASLAYPIRSGVPIMLVSE-ARQVDDQ 63
                      GV +++        DD 
Sbjct: 524 -----------GVRVIVAGTLDINPDDD 540


>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA
           CPG methylation, cell cycle, developmental protein, DNA
           damage; HET: 5CM; 1.41A {Mus musculus} PDB: 2zo0_B*
           2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A*
           2zkg_A 3dwh_A 3bi7_A 3clz_A*
          Length = 212

 Score = 24.9 bits (54), Expect = 4.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 20  LTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLV 54
           LT  N  L       +++K + A   R G P+ +V
Sbjct: 90  LTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVV 124


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.137    0.375 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 461,333
Number of extensions: 13871
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 11
Length of query: 64
Length of database: 5,693,230
Length adjustment: 35
Effective length of query: 29
Effective length of database: 4,844,690
Effective search space: 140496010
Effective search space used: 140496010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)